BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039537
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
          Length = 861

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 3   ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
           E + +H KT  F    P +DGRK  YTA  LP       +++    E  D    R FKVS
Sbjct: 78  EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD----RIFKVS 133

Query: 62  VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct: 134 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 175


>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
 pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
          Length = 859

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 3   ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
           E + +H KT  F    P +DGRK  YTA  LP       +++    E  D    R FKVS
Sbjct: 76  EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD----RIFKVS 131

Query: 62  VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct: 132 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 173


>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
 pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
 pdb|1MCX|A Chain A, Structure Of Full-Length Annexin A1 In The Presence Of
           Calcium
          Length = 346

 Score = 28.9 bits (63), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 48  ESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLR 97
           E+G+ ++  +  V + + +     HLR+  Q  S+ + HD+ +VLD+ L+
Sbjct: 208 EAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLELK 257


>pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
           Mesorhizobium Loti
 pdb|2OZ8|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
           Mesorhizobium Loti
          Length = 389

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 26  FYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKS---- 81
           F  A ++ +++  F IK+  RD   D++R    K  V   S+  I+    +   ++    
Sbjct: 153 FSHAASIGYSA--FKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKL 210

Query: 82  ---REAPHDIIQVLDVVLR 97
              REA HD++ V D +LR
Sbjct: 211 VAIREAGHDLLWVEDPILR 229


>pdb|1C5D|L Chain L, The Crystal Structure Of The Fab Fragment Of A Rat
           Monoclonal Antibody Against The Main Immunogenic Region
           Of The Human Muscle Acetylcholine Receptor
 pdb|1C5D|A Chain A, The Crystal Structure Of The Fab Fragment Of A Rat
           Monoclonal Antibody Against The Main Immunogenic Region
           Of The Human Muscle Acetylcholine Receptor
          Length = 213

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 59  KVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSK 102
           KV++   +  DIN    + Q K  +AP  +I+   +++  +PS+
Sbjct: 18  KVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSR 61


>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
          Gondii (Tgadf)
          Length = 139

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 2  KELLEKHGKTH---FNGCLPAYDGRKGFYTAG 30
          K ++EK GK +   F G LPA D R G Y  G
Sbjct: 56 KIVVEKDGKGNADEFRGALPANDCRFGVYDCG 87


>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
          From Thermosynechococcus Elongatus
 pdb|2J86|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
          Of Thermosynechococcus Elongatus
 pdb|2J86|B Chain B, Structural Analysis Of The Pp2c Family Phosphatase Tppha
          Of Thermosynechococcus Elongatus
          Length = 240

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 65 ASRADINHLRQFLQCKSREAPHDIIQVL 92
          ASR  ++H+RQ+L+    +  HD + +L
Sbjct: 45 ASRLAVDHIRQYLETHLEDLQHDPVTLL 72


>pdb|2Y09|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
          Three Metals In The Catalytic Center For Efficient
          Catalysis
          Length = 240

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 65 ASRADINHLRQFLQCKSREAPHDIIQVL 92
          ASR  ++H+RQ+L+    +  HD + +L
Sbjct: 45 ASRLAVDHIRQYLETHLEDLQHDPVTLL 72


>pdb|2XZV|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
          Three Metals In The Catalytic Center For Efficient
          Catalysis
          Length = 240

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 65 ASRADINHLRQFLQCKSREAPHDIIQVL 92
          ASR  ++H+RQ+L+    +  HD + +L
Sbjct: 45 ASRLAVDHIRQYLETHLEDLQHDPVTLL 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,085,065
Number of Sequences: 62578
Number of extensions: 110536
Number of successful extensions: 171
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)