Query 039537
Match_columns 103
No_of_seqs 103 out of 389
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 99.8 6.8E-20 2.3E-24 150.4 1.4 94 2-101 78-173 (861)
2 4f1n_A Kpago; argonaute, RNAI, 99.4 1.8E-14 6.1E-19 120.1 -2.5 99 2-101 105-229 (1046)
3 1u04_A Argonaute, hypothetical 62.3 1.6 5.5E-05 35.8 0.0 37 17-72 51-88 (771)
4 1qbe_A Bacteriophage Q beta ca 36.6 49 0.0017 20.6 3.8 40 22-66 31-70 (132)
5 4gln_D D-RFX001; heterochiral 25.6 31 0.0011 18.7 1.3 27 3-29 27-54 (56)
6 1j8r_A PAPG adhesin, pyeloneph 23.4 52 0.0018 22.2 2.4 46 17-68 109-159 (196)
7 2agh_C Zinc finger protein HRX 23.1 13 0.00046 17.6 -0.4 11 92-102 12-22 (31)
8 2lg7_A Uncharacterized protein 23.0 56 0.0019 19.9 2.3 20 49-68 4-23 (129)
9 2yad_A Surfactant protein C br 16.9 81 0.0028 20.8 2.2 45 16-80 74-118 (171)
10 3iez_A RAS GTPase-activating-l 16.8 85 0.0029 19.5 2.2 22 54-75 58-85 (114)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=99.76 E-value=6.8e-20 Score=150.35 Aligned_cols=94 Identities=33% Similarity=0.564 Sum_probs=76.3
Q ss_pred hhHHhhhCCccccCccccccCCcceeecCccccccc--cceEEEeecCCCCccceeeeeeEEEEeecccchHHHHHHhch
Q 039537 2 KELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSK--DFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQC 79 (103)
Q Consensus 2 ~~l~~~~~~~~f~~~~~a~Dg~k~l~s~~~Lp~~~~--~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~L~~~l~g 79 (103)
++|+++|+...||+..+||||+++|||+++||+++. ++.|.++.+ +++++|+|+|+++++|++++|.+||+|
T Consensus 78 ~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~------~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 78 EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGE------GKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp HHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred HHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCC------CCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence 467778877789998899999999999999998543 344444321 357899999999999999999999999
Q ss_pred hccCCCcchheeeeehhccCCC
Q 039537 80 KSREAPHDIIQVLDVVLRESPS 101 (103)
Q Consensus 80 ~~~~~~~~aiqaLdivLR~~ps 101 (103)
+....+.++||||||||||.|+
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhhcc
Confidence 9888899999999999999875
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=99.37 E-value=1.8e-14 Score=120.09 Aligned_cols=99 Identities=11% Similarity=0.105 Sum_probs=69.0
Q ss_pred hhHHhhhC-CccccCccccccCCcceeecCccc---cccccceEEEe-----ecCC------------CCccceeeeeeE
Q 039537 2 KELLEKHG-KTHFNGCLPAYDGRKGFYTAGALP---FTSKDFNIKLI-----DRDE------------SGDIKREREFKV 60 (103)
Q Consensus 2 ~~l~~~~~-~~~f~~~~~a~Dg~k~l~s~~~Lp---~~~~~~~V~l~-----~~~~------------~~~~~~~~~f~V 60 (103)
..|+++.. ...|++ .+||||+++|||+.+|| +....+.|.+. ++++ +.+..++++|+|
T Consensus 105 ~~ll~e~~~~~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 183 (1046)
T 4f1n_A 105 EALLDEDEILYKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMVSQI 183 (1046)
T ss_dssp HHHHHSCTTTGGGTT-SEEECSSSEEEESSCGGGSTTCTTCCC-------------------------------CGGGGE
T ss_pred HHHHHhcchhhhcCC-ceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccccccccccccCceEEE
Confidence 45666521 122545 59999999999999999 44457888888 4433 123467889999
Q ss_pred EEEeecccchHHHHHHhchhccCC-----CcchheeeeehhccCCC
Q 039537 61 SVKLASRADINHLRQFLQCKSREA-----PHDIIQVLDVVLRESPS 101 (103)
Q Consensus 61 ~Ik~~~~i~l~~L~~~l~g~~~~~-----~~~aiqaLdivLR~~ps 101 (103)
+|+++++|++++|.+||.|+.... +.++||||++||+|.|.
T Consensus 184 ~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~ 229 (1046)
T 4f1n_A 184 TLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFM 229 (1046)
T ss_dssp EEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhh
Confidence 999999999999999999987653 27899999999998774
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=62.34 E-value=1.6 Score=35.78 Aligned_cols=37 Identities=11% Similarity=-0.097 Sum_probs=27.1
Q ss_pred cccccCCcc-eeecCccccccccceEEEeecCCCCccceeeeeeEEEEeecccchHH
Q 039537 17 LPAYDGRKG-FYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINH 72 (103)
Q Consensus 17 ~~a~Dg~k~-l~s~~~Lp~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~ 72 (103)
..+|||..- ||++++|+. + ...+.|+++.++.++++.
T Consensus 51 ~~~fdg~~~~l~~~~~l~~----------~---------~~~~~~~~~~~~~~~~~~ 88 (771)
T 1u04_A 51 GIVIDPENLIIATTKELEY----------E---------GEFIPEGEISFSELRNDY 88 (771)
T ss_dssp EEEEETTTTEEEESSCCCC----------S---------SCCEEEEEECGGGSCHHH
T ss_pred cEEecCcceeeeccceecc----------C---------CCeEEEEEEEcceecHHH
Confidence 679999663 899999871 1 123888899999888443
No 4
>1qbe_A Bacteriophage Q beta capsid; coat protein, RNA binding, icosahedral virus; 3.50A {Enterobacteria phage qbeta} SCOP: d.85.1.1
Probab=36.62 E-value=49 Score=20.56 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=19.8
Q ss_pred CCcceeecCccccccccceEEEeecCCCCccceeeeeeEEEEeec
Q 039537 22 GRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLAS 66 (103)
Q Consensus 22 g~k~l~s~~~Lp~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~ 66 (103)
|-..+--++..|.=++.+.|.+..+ +++.+.|+|.||...
T Consensus 31 GVa~lseagavpalekrvtvsv~qp-----srnrknykvqvk~qn 70 (132)
T 1qbe_A 31 GVASLSQAGAVPALEKRVTVSVSQP-----SRNRKNYKVQVKIQN 70 (132)
T ss_dssp TEEEEEETTCCGGGCCEEEEEEECC----------CEEEEEEEEE
T ss_pred chhhhhhccCchhhhheEEEEeccc-----ccCccceeEEEEecC
Confidence 3344444555554344555555433 466778999988764
No 5
>4gln_D D-RFX001; heterochiral protein-protein complex, D-protein antagonist, factor-inihibitor complex; HET: DTY DSG DTH DVA DPN DTR DGL DIL DAS; 1.60A {Synthetic} PDB: 4gls_D* 4gls_C*
Probab=25.63 E-value=31 Score=18.70 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=18.2
Q ss_pred hHHhhhCCccccC-ccccccCCcceeec
Q 039537 3 ELLEKHGKTHFNG-CLPAYDGRKGFYTA 29 (103)
Q Consensus 3 ~l~~~~~~~~f~~-~~~a~Dg~k~l~s~ 29 (103)
+.+.+|..+.+.. ..|.||....-|+.
T Consensus 27 kvfkqya~~n~~d~geWtYddaTKTFTV 54 (56)
T 4gln_D 27 DVFFVYAASXFSDFDDWTYDDATKTFTV 54 (56)
T ss_pred HHHHHHHHhcCCcCCeeEecCcceeEEe
Confidence 5677886555554 58899887666654
No 6
>1j8r_A PAPG adhesin, pyelonephritic adhesin; PAG adhesin, GBO4, structural genomics, PSI, protein structure initiative; HET: NGA GLA GAL BGC; 1.80A {Escherichia coli} SCOP: b.2.3.3 PDB: 1j8s_A
Probab=23.36 E-value=52 Score=22.18 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=33.5
Q ss_pred cccccCCcceeecCccc-----cccccceEEEeecCCCCccceeeeeeEEEEeeccc
Q 039537 17 LPAYDGRKGFYTAGALP-----FTSKDFNIKLIDRDESGDIKREREFKVSVKLASRA 68 (103)
Q Consensus 17 ~~a~Dg~k~l~s~~~Lp-----~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i 68 (103)
.+++||.+.|+-++... |++..|.+-|+.+ -....|.|-|++.+-|
T Consensus 109 ~~~~~~grvC~~~G~~k~L~~kF~dl~f~~~LP~D------LPkG~Y~~pv~yirGi 159 (196)
T 1j8r_A 109 ERAFDAGNLCQKPGEITRLTEKFDDIIFKVALPAD------LPLGDYSVKIPYTSGM 159 (196)
T ss_dssp EEECCCEESSCCTTCEEEECCCCCCEEEEEECCTT------CCSEEEEEEEEEEEEE
T ss_pred eeecCCccEecCcchhhhhhhhhCcEEEEEEcccc------CCCCccccccchhhcc
Confidence 57889999999887763 3567788888665 2235699999888644
No 7
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=23.13 E-value=13 Score=17.56 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=7.7
Q ss_pred eeehhccCCCC
Q 039537 92 LDVVLRESPSK 102 (103)
Q Consensus 92 LdivLR~~ps~ 102 (103)
||.||+..||+
T Consensus 12 mdfvlkntpsm 22 (31)
T 2agh_C 12 MDFVLKNTPSM 22 (31)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHhCChhH
Confidence 56677777775
No 8
>2lg7_A Uncharacterized protein; APSY spectroscopy, structural genomics, joint center for STR genomics, JCSG, calcium-binding protein; NMR {Parabacteroides distasonis} PDB: 2lge_A
Probab=22.98 E-value=56 Score=19.92 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=15.2
Q ss_pred CCccceeeeeeEEEEeeccc
Q 039537 49 SGDIKREREFKVSVKLASRA 68 (103)
Q Consensus 49 ~~~~~~~~~f~V~Ik~~~~i 68 (103)
++|+++...|.|+|...+..
T Consensus 4 depggkgamyevtieqsgdf 23 (129)
T 2lg7_A 4 DEPGGKGAMYEVTIEQSGDF 23 (129)
T ss_dssp CCCSCCCCCEEEEEEEEESC
T ss_pred CCCCCcceeEEEEEeccCCh
Confidence 34567888999999988743
No 9
>2yad_A Surfactant protein C brichos domain; pulmonary surfactant system, interstitial LUNG disease, AMYL chaperone; HET: MSE; 2.20A {Homo sapiens}
Probab=16.87 E-value=81 Score=20.79 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=29.7
Q ss_pred ccccccCCcceeecCccccccccceEEEeecCCCCccceeeeeeEEEEeecccchHHHHHHhchh
Q 039537 16 CLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCK 80 (103)
Q Consensus 16 ~~~a~Dg~k~l~s~~~Lp~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~L~~~l~g~ 80 (103)
..++||.+..++..+++|-. -=|..++...+.-+|..|..++...
T Consensus 74 gtvVyDYqhllIAyrpapg~--------------------aCYImKMdpesIPsLe~L~Rk~~n~ 118 (171)
T 2yad_A 74 GLVVYDYQQLLIAYKPAPGT--------------------CCYIMKIAPESIPSLEALTRKVHNF 118 (171)
T ss_dssp EEEEEETTTTEEEEESSTTS--------------------CEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred ccEEEEecceeEEeccCCCc--------------------eEEEEeeChhhCcCHHHHHHHHHHh
Confidence 36788988888888777631 2355555555666777777766443
No 10
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics consortium, SGC, alternative splicing, calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens} PDB: 4eza_A
Probab=16.77 E-value=85 Score=19.46 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=14.8
Q ss_pred eeeeeeEEEEeec------ccchHHHHH
Q 039537 54 REREFKVSVKLAS------RADINHLRQ 75 (103)
Q Consensus 54 ~~~~f~V~Ik~~~------~i~l~~L~~ 75 (103)
.+..|.|.+++.+ .+.+++|.+
T Consensus 58 e~GvF~Ie~~~~gi~~~~~~l~ldDLLq 85 (114)
T 3iez_A 58 DVGIFDVRSKFLGVEMEKVQLNIQDLLQ 85 (114)
T ss_dssp STTEEEEEEEETTEEEEEEEEEHHHHHH
T ss_pred CCeEEEEEEEECCcceeEEEeeHHHHHH
Confidence 4567888877643 577777765
Done!