Query 039537
Match_columns 103
No_of_seqs 103 out of 389
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 18:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039537.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039537hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u04a1 b.34.14.1 (A:2-323) Ar 49.5 3.1 0.00023 29.0 1.5 20 14-34 48-67 (322)
2 d1y02a1 a.140.2.1 (A:71-114) R 46.8 3.8 0.00028 20.1 1.1 33 68-100 9-43 (44)
3 d1l1pa_ d.26.1.1 (A:) Trigger 40.1 11 0.00077 21.4 2.7 35 36-70 67-102 (106)
4 d1qbea_ d.85.1.1 (A:) Qbeta co 36.2 23 0.0017 20.5 3.8 41 21-66 30-70 (132)
5 d1t11a3 d.26.1.1 (A:135-247) T 34.5 11 0.00081 21.4 2.1 33 36-68 76-109 (113)
6 d1j8ra_ b.2.3.3 (A:) PapG adhe 34.2 13 0.00092 23.6 2.5 46 17-68 109-159 (196)
7 d1u0sa_ d.58.24.1 (A:) CheY-bi 30.3 21 0.0015 19.5 2.8 22 56-77 3-24 (86)
8 d1hxva_ d.26.1.1 (A:) Trigger 23.1 13 0.00095 19.9 0.9 30 36-65 54-84 (85)
9 d1kk8a1 b.34.3.1 (A:29-76) Myo 16.7 22 0.0016 17.5 0.8 11 21-31 1-11 (48)
10 d1nija2 d.237.1.1 (A:224-318) 14.1 56 0.0041 17.5 2.3 22 59-80 3-24 (95)
No 1
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=49.52 E-value=3.1 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=15.6
Q ss_pred cCccccccCCcceeecCcccc
Q 039537 14 NGCLPAYDGRKGFYTAGALPF 34 (103)
Q Consensus 14 ~~~~~a~Dg~k~l~s~~~Lp~ 34 (103)
+|...+|||.- ||++++||.
T Consensus 48 ~G~~~~fDg~~-l~~~kkL~~ 67 (322)
T d1u04a1 48 VGIVIDPENLI-IATTKELEY 67 (322)
T ss_dssp TEEEEETTTTE-EEESSCCCC
T ss_pred cCeEEecCCcE-EecccccCc
Confidence 35577889876 689999985
No 2
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.82 E-value=3.8 Score=20.14 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=23.3
Q ss_pred cchHHHHHHhchhcc--CCCcchheeeeehhccCC
Q 039537 68 ADINHLRQFLQCKSR--EAPHDIIQVLDVVLRESP 100 (103)
Q Consensus 68 i~l~~L~~~l~g~~~--~~~~~aiqaLdivLR~~p 100 (103)
+-..+|.+||.-+.- +.+.|-=.-.|.||.|.|
T Consensus 9 LkvkDLr~YL~l~~I~t~~CrEKedLV~LVl~h~p 43 (44)
T d1y02a1 9 MKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQP 43 (44)
T ss_dssp SCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHcCCChhhhhhHHHHHHHHHhcCC
Confidence 446789999987753 344555556788999988
No 3
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}
Probab=40.05 E-value=11 Score=21.38 Aligned_cols=35 Identities=6% Similarity=0.182 Sum_probs=23.2
Q ss_pred cccceEEEeecCCCC-ccceeeeeeEEEEeecccch
Q 039537 36 SKDFNIKLIDRDESG-DIKREREFKVSVKLASRADI 70 (103)
Q Consensus 36 ~~~~~V~l~~~~~~~-~~~~~~~f~V~Ik~~~~i~l 70 (103)
..+|++.++++...+ -.++.-.|+|+|+.+.+-.+
T Consensus 67 ~~~~~~~~P~d~~~~~laGK~v~f~V~v~~i~~~~l 102 (106)
T d1l1pa_ 67 EFTIDVTFPEEYHAENLKGKAAKFAINLKKVEEREL 102 (106)
T ss_dssp CEEEEECCCSSCCCTTTTTCCEEEEEEEEEEECCCC
T ss_pred eEEEEEEeCCCCCchhhCCCEEEEEEEEEEeccccC
Confidence 556777776654322 23577789999998876443
No 4
>d1qbea_ d.85.1.1 (A:) Qbeta coat protein {Bacteriophage Qbeta [TaxId: 39803]}
Probab=36.23 E-value=23 Score=20.51 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=20.4
Q ss_pred cCCcceeecCccccccccceEEEeecCCCCccceeeeeeEEEEeec
Q 039537 21 DGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLAS 66 (103)
Q Consensus 21 Dg~k~l~s~~~Lp~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~ 66 (103)
.|-..+--++..|.=++.+.|.+..+ +++.+.|+|.||...
T Consensus 30 NGVaslseagavpalekrvtvsv~qp-----srnrknykvqvk~qn 70 (132)
T d1qbea_ 30 NGVASLSQAGAVPALEKRVTVSVSQP-----SRNRKNYKVQVKIQN 70 (132)
T ss_dssp TTEEEEEETTCCGGGCCEEEEEEECC----------CEEEEEEEEE
T ss_pred cchhhhhhccCchhhhheEEEEeccc-----ccCccceeEEEEecC
Confidence 34444444555554344555555433 466678999888764
No 5
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}
Probab=34.46 E-value=11 Score=21.45 Aligned_cols=33 Identities=6% Similarity=0.075 Sum_probs=21.8
Q ss_pred cccceEEEeecCCCC-ccceeeeeeEEEEeeccc
Q 039537 36 SKDFNIKLIDRDESG-DIKREREFKVSVKLASRA 68 (103)
Q Consensus 36 ~~~~~V~l~~~~~~~-~~~~~~~f~V~Ik~~~~i 68 (103)
..+|+++++++...+ -.++.-.|+|+|+.+.+-
T Consensus 76 ~~~~~~~~Ped~~~~~laGk~~~f~v~v~~Ik~~ 109 (113)
T d1t11a3 76 EFVIDVTFPEDYHAENLKGKAAKFAIKVNKVEAR 109 (113)
T ss_dssp CCCEEEECCTTCSCTTTSSCEEEECCCEEEEEEE
T ss_pred EEEEEEeCCCcCCccccCCCeEEEEEEEEEEEec
Confidence 567788876653322 235677899999887654
No 6
>d1j8ra_ b.2.3.3 (A:) PapG adhesin receptor-binding domain {Escherichia coli [TaxId: 562]}
Probab=34.22 E-value=13 Score=23.63 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=33.8
Q ss_pred cccccCCcceeecCcc-----ccccccceEEEeecCCCCccceeeeeeEEEEeeccc
Q 039537 17 LPAYDGRKGFYTAGAL-----PFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRA 68 (103)
Q Consensus 17 ~~a~Dg~k~l~s~~~L-----p~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i 68 (103)
.++.||.+.|+-++.. +|++..|.+-|+.+ -....|.|-|++.+-|
T Consensus 109 ~~~~~~grvC~~~G~~~~L~~~F~dl~f~~~LPvD------LPkG~Y~~pi~yirGi 159 (196)
T d1j8ra_ 109 ERAFDAGNLCQKPGEITRLTEKFDDIIFKVALPAD------LPLGDYSVKIPYTSGM 159 (196)
T ss_dssp EEECCCEESSCCTTCEEEECCCCCCEEEEEECCTT------CCSEEEEEEEEEEEEE
T ss_pred eeecCCccEecCcchhhhhhcccCcEEEEEEcccc------CCCCcccccchhhhhh
Confidence 5788999999988776 34677888888665 2335699999888644
No 7
>d1u0sa_ d.58.24.1 (A:) CheY-binding domain of CheA {Thermotoga maritima [TaxId: 2336]}
Probab=30.32 E-value=21 Score=19.51 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.8
Q ss_pred eeeeEEEEeecccchHHHHHHh
Q 039537 56 REFKVSVKLASRADINHLRQFL 77 (103)
Q Consensus 56 ~~f~V~Ik~~~~i~l~~L~~~l 77 (103)
+.|.|+|.+....-|.+.+.||
T Consensus 3 ~~y~i~V~l~~dc~lK~vRa~m 24 (86)
T d1u0sa_ 3 KTFYIKVILKEGTQLKSARIYL 24 (86)
T ss_dssp EEEEEEEECCTTCSSHHHHHHH
T ss_pred eEEEEEEEECCCCccHHHHHHH
Confidence 5799999999999999999887
No 8
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}
Probab=23.07 E-value=13 Score=19.93 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=18.8
Q ss_pred cccceEEEeecCCCC-ccceeeeeeEEEEee
Q 039537 36 SKDFNIKLIDRDESG-DIKREREFKVSVKLA 65 (103)
Q Consensus 36 ~~~~~V~l~~~~~~~-~~~~~~~f~V~Ik~~ 65 (103)
..+|.|+++.....+ ..++.-.|.|+|+.+
T Consensus 54 ~~~~~i~~p~~y~~~~laGk~~~f~V~v~~V 84 (85)
T d1hxva_ 54 KKTLALTFPSDYHVKELQSKPVTFEVVLKAI 84 (85)
T ss_dssp EEEECCCCCTTSSSSGGGSCCCEEEEEECCB
T ss_pred eEEEEEEChhhcCcccCCCCcEEEEEEEEEe
Confidence 456777776654432 235556888888754
No 9
>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=16.72 E-value=22 Score=17.54 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=8.9
Q ss_pred cCCcceeecCc
Q 039537 21 DGRKGFYTAGA 31 (103)
Q Consensus 21 Dg~k~l~s~~~ 31 (103)
|++|++|-|.+
T Consensus 1 D~KK~vWVPD~ 11 (48)
T d1kk8a1 1 DGKKNCWVPDE 11 (48)
T ss_dssp CTTTEEEEEET
T ss_pred CCcceEEecCC
Confidence 78899998865
No 10
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.14 E-value=56 Score=17.49 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.8
Q ss_pred eEEEEeecccchHHHHHHhchh
Q 039537 59 KVSVKLASRADINHLRQFLQCK 80 (103)
Q Consensus 59 ~V~Ik~~~~i~l~~L~~~l~g~ 80 (103)
++++...+.++...+..||...
T Consensus 3 S~~~~~~~P~d~~~f~~~l~~l 24 (95)
T d1nija2 3 SIVVELDYPVDISEVSRVMENL 24 (95)
T ss_dssp EEEEEESSCBCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4677788889999999998764
Done!