BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039538
MSTSAYIRHTCPLASFACIPRSKAFSFQLRVSTHPPLHSSHCKLHRRRPPPMSSDHAGTN
FPANKLEPIQLNDESDFYQITSPDGLISISGFGSLLSENSARSTFPNLINFRVAKLHGFR
RVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFEIKKIRGIKLEELCTMIPA
FIKREHEFRFLAVSPETLDGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYFHHYGRYNID
KIWRDDILPCRVYLRHCVLAAKNLGDEAYNNFLDHTSLGDCKTTIREYLATTGAGIMEEE
PPESLKTRYGG

High Scoring Gene Products

Symbol, full name Information P value
AT4G16060 protein from Arabidopsis thaliana 2.1e-91

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039538
        (311 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129985 - symbol:AT4G16060 "AT4G16060" species...   911  2.1e-91   1


>TAIR|locus:2129985 [details] [associations]
            symbol:AT4G16060 "AT4G16060" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829 GO:GO:0009570
            EMBL:CP002687 IPI:IPI00530248 RefSeq:NP_193341.3 UniGene:At.33115
            ProteinModelPortal:F4JKZ9 PRIDE:F4JKZ9 EnsemblPlants:AT4G16060.1
            GeneID:827291 KEGG:ath:AT4G16060 OMA:RHCVLAA Uniprot:F4JKZ9
        Length = 289

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 177/243 (72%), Positives = 198/243 (81%)

Query:    69 IQLNDESDFYQITSPDXXXXXXXXXXXXXENSARSTFPNLINFRVAKLHGFRRVFAHVAP 128
             ++L DESDF ++ S D             E SARSTFP+L NFR+AKL GFRRVFAH AP
Sbjct:    57 MELEDESDFEKLLSSDNRISITGFGSLLSERSARSTFPDLENFRIAKLQGFRRVFAHSAP 116

Query:   129 IFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFEIKKIRGIKLEELCTMIPAFIKREHEF 188
             IFFERGIA P+TKEISSLSVEPCEG++L+VTVFEIK           + IPAFI RE EF
Sbjct:   117 IFFERGIANPETKEISSLSVEPCEGESLVVTVFEIKS----------SEIPAFIGRELEF 166

Query:   189 RFLAVSPETLDGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYFHHYGRYNIDKIWRDDIL 248
             RFLAV PETL+GKP+TN AVLC R SDEEFFQIRCKG+K IYF HYGR+ IDKIWRDDIL
Sbjct:   167 RFLAVVPETLEGKPYTNSAVLCGRYSDEEFFQIRCKGNKGIYFQHYGRFKIDKIWRDDIL 226

Query:   249 PCRVYLRHCVLAAKNLGDEAYNNFLDHTSLGDCKTTIREYLATTGAGIMEEEPPESLKTR 308
             PCR+YLRHCVLAAKNLGDEAYNNFLDHT LGD KTTIREYL++TG+GIMEEEPPE+LK+R
Sbjct:   227 PCRLYLRHCVLAAKNLGDEAYNNFLDHTFLGDRKTTIREYLSSTGSGIMEEEPPEALKSR 286

Query:   309 YGG 311
             YGG
Sbjct:   287 YGG 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       298   0.00094  115 3  11 22  0.49    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  220 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.43u 0.19s 24.62t   Elapsed:  00:00:01
  Total cpu time:  24.43u 0.19s 24.62t   Elapsed:  00:00:01
  Start:  Sat May 11 06:11:27 2013   End:  Sat May 11 06:11:28 2013

Back to top