BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039538
         (311 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q924T7|RNF31_MOUSE E3 ubiquitin-protein ligase RNF31 OS=Mus musculus GN=Rnf31 PE=1
           SV=2
          Length = 1066

 Score = 33.5 bits (75), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 31  VSTHPPLHSSHCKLHRRRPPPMSSDHAGTNFPANKLEP 68
           + T P L S    L + RP P SS H G++ PA+  +P
Sbjct: 433 IPTQPALQSYPSSLEKGRPKPGSSQHLGSSLPASCGDP 470


>sp|P25092|GUC2C_HUMAN Heat-stable enterotoxin receptor OS=Homo sapiens GN=GUCY2C PE=1
           SV=2
          Length = 1073

 Score = 32.7 bits (73), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 71  LNDESDFYQITSPDGL-----ISISGFGSLLSENSARSTFPNLINFRVAKLHGFRRVFAH 125
            ND+     +T+PD +     +++S   SLL+ + +R+  P   +F +A L+G   +F H
Sbjct: 276 FNDQYFEDNVTAPDYMKNVLVLTLSPGNSLLNSSFSRNLSPTKRDFALAYLNGI-LLFGH 334

Query: 126 VAPIFFERG--IAKPK 139
           +  IF E G  I  PK
Sbjct: 335 MLKIFLENGENITTPK 350


>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) GN=1a
            PE=1 SV=1
          Length = 4471

 Score = 32.3 bits (72), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 234  YGRYNIDKIWRDDILPCRVYLRHCVLAAKNLGDEAYNNFLDHTSLGD 280
            YG   ++ +W DD + C    RH + ++ N+ +  Y+  L   +LGD
Sbjct: 3356 YGSMTLNGLWLDDKVYCP---RHVICSSSNMNEPDYSALLCRVTLGD 3399


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1)
            GN=rep PE=3 SV=1
          Length = 7182

 Score = 32.3 bits (72), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 234  YGRYNIDKIWRDDILPCRVYLRHCVLAAKNLGDEAYNNFLDHTSLGD 280
            YG   ++ +W DD + C    RH + ++ N+ +  Y+  L   +LGD
Sbjct: 3356 YGSMTLNGLWLDDKVYCP---RHVICSSSNMNEPDYSALLCRVTLGD 3399


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,975,747
Number of Sequences: 539616
Number of extensions: 4984176
Number of successful extensions: 9994
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9993
Number of HSP's gapped (non-prelim): 6
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)