Query 039538
Match_columns 311
No_of_seqs 35 out of 37
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 10:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06661 GGCT_like GGCT-like do 98.9 7.5E-09 1.6E-13 78.3 6.7 87 89-201 1-90 (99)
2 PF04752 ChaC: ChaC-like prote 98.7 5.4E-08 1.2E-12 86.1 8.2 151 88-269 2-164 (178)
3 PHA03014 hypothetical protein; 97.9 9.2E-05 2E-09 65.3 9.8 132 88-265 4-142 (163)
4 COG3703 ChaC Uncharacterized p 97.6 0.00014 3.1E-09 66.2 6.3 86 83-187 9-94 (190)
5 KOG3182 Predicted cation trans 97.3 0.00066 1.4E-08 62.8 7.0 168 80-273 3-175 (212)
6 KOG4059 Uncharacterized conser 96.6 0.0015 3.1E-08 59.3 3.1 97 87-205 24-125 (193)
7 PF06094 AIG2: AIG2-like famil 95.7 0.019 4.2E-07 44.2 4.8 85 89-201 1-92 (102)
8 PF13772 AIG2_2: AIG2-like fam 92.9 0.26 5.6E-06 38.1 5.2 69 156-265 2-74 (83)
9 COG2105 Uncharacterized conser 70.5 12 0.00025 32.4 5.6 36 149-195 48-85 (120)
10 COG0059 IlvC Ketol-acid reduct 32.2 26 0.00057 35.1 1.6 23 71-95 7-29 (338)
11 COG0776 HimA Bacterial nucleoi 30.7 24 0.00052 29.2 0.9 22 83-104 39-61 (94)
12 cd00595 NDPk Nucleoside diphos 26.1 36 0.00078 28.5 1.2 28 283-310 81-108 (133)
13 PRK13403 ketol-acid reductoiso 24.1 47 0.001 33.2 1.8 25 71-97 5-29 (335)
14 KOG4450 Uncharacterized conser 23.3 52 0.0011 30.2 1.8 63 146-213 58-120 (168)
15 KOG2425 Nuclear protein involv 22.9 96 0.0021 33.2 3.8 62 238-299 240-301 (599)
16 PF07991 IlvN: Acetohydroxy ac 20.9 52 0.0011 29.9 1.3 13 83-95 3-15 (165)
17 cd04416 NDPk_TX NDP kinase dom 20.5 38 0.00083 28.4 0.3 27 284-310 81-107 (132)
18 cd04414 NDPk6 Nucleoside dipho 20.1 44 0.00096 28.4 0.7 29 282-310 81-109 (135)
No 1
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=98.85 E-value=7.5e-09 Score=78.25 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=74.5
Q ss_pred EEeeccccChhcccccCCCccceeEEEEcCceeeccccchhhhhcCCCCCCcccccccceeecCCeeEEEEEEEEecccc
Q 039538 89 ISGFGSLLSENSARSTFPNLINFRVAKLHGFRRVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFEIKKIRG 168 (311)
Q Consensus 89 I~GyGSLLse~SARsTFP~l~nFR~a~l~G~RRVF~h~a~iff~RGIa~~~T~e~AsLsvEp~~g~~~vvsvFEI~~~~G 168 (311)
||+||||++........+.....++|.+.||++.|+... +-.++.|.++..+.|.|++|+.+
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~----------------~~p~~~~~~~~~v~G~v~~i~~~-- 62 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS----------------GYPGLVPGPGARVWGELYEVDPE-- 62 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC----------------ccCEEEeCCCCEEEEEEEEECHH--
Confidence 699999999999988877788999999999999999322 23467788888999999999977
Q ss_pred chhhhhhcchhhhhhhcc---ceeeeeecccccCCC
Q 039538 169 IKLEELCTMIPAFIKREH---EFRFLAVSPETLDGK 201 (311)
Q Consensus 169 l~~eel~~~lpafieRE~---eY~~~~V~~~~Ldg~ 201 (311)
++..|+++|- .|.+..|.....+|.
T Consensus 63 --------~l~~LD~~E~~~~~Y~r~~v~v~~~~~~ 90 (99)
T cd06661 63 --------DLARLDAFEGVPGGYRREEVEVELEDGE 90 (99)
T ss_pred --------HHHhhhhhcCCCCCeEEEEEEEEeCCCC
Confidence 9999999999 799999888666554
No 2
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=98.70 E-value=5.4e-08 Score=86.09 Aligned_cols=151 Identities=21% Similarity=0.320 Sum_probs=101.5
Q ss_pred EEEeeccccChhcccccCCCccceeEEEEcCceeeccccchhhhhcCCCCCCcccccccceeecCCeeEEEEEEEEeccc
Q 039538 88 SISGFGSLLSENSARSTFPNLINFRVAKLHGFRRVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFEIKKIR 167 (311)
Q Consensus 88 sI~GyGSLLse~SARsTFP~l~nFR~a~l~G~RRVF~h~a~iff~RGIa~~~T~e~AsLsvEp~~g~~~vvsvFEI~~~~ 167 (311)
=||||||||-. ..|+ ..+-++|.++||+|.|..-... .||-+..... .|++++.++..+.+.+|+|+.+
T Consensus 2 WVFGYGSLiW~----p~f~-~~e~~~a~i~Gy~R~F~~~s~~--hRGTpe~PGr---vltL~~~~~~~c~Gvayrv~~~- 70 (178)
T PF04752_consen 2 WVFGYGSLIWN----PGFP-YAERRPAYIKGYHRRFCQGSTD--HRGTPEQPGR---VLTLDPGEEGSCWGVAYRVPEE- 70 (178)
T ss_pred EEEEeccceeC----CCCC-ccceEEEEecCcccceEeeccc--cCCCcCCCcc---eeeeeeCCCCEEEEEEEEecCc-
Confidence 48999999974 3343 5677799999999999976555 7886665544 8899999999999999999987
Q ss_pred cchhhhhhcchhhhhhhcc--ceeeeeecc---cccCCCCCCCceeEEecCC-hHHHHHHHhcCChhhhhhhccccCccc
Q 039538 168 GIKLEELCTMIPAFIKREH--EFRFLAVSP---ETLDGKPFTNRAVLCARSS-DEEFFQIRCKGSKEIYFHHYGRYNIDK 241 (311)
Q Consensus 168 Gl~~eel~~~lpafieRE~--eY~~~~V~~---~~Ldg~p~~~~AvlCar~S-De~y~~~rC~~~~e~y~~~~gr~~i~~ 241 (311)
.++| .+..|.+||. +|....|.. .+.++.+....|+...-.. ...|. |..-.+.
T Consensus 71 --~~~~---~l~~L~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~~~n~~y~---------------g~~~~~~ 130 (178)
T PF04752_consen 71 --DAEE---VLEYLDEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVADPDNPQYL---------------GPLPLEE 130 (178)
T ss_pred --CHHH---HHHHHhhcccccccceEEEEEEEeccCCCCceEEEEEEEEecCCCcccc---------------CCCCHHH
Confidence 3344 8999999999 688766655 2223333223455444221 12221 2222222
Q ss_pred cc------cCCccccHhHHHHHHHHHHHhcHHHH
Q 039538 242 IW------RDDILPCRVYLRHCVLAAKNLGDEAY 269 (311)
Q Consensus 242 IW------~~dIlPcr~YLrhCvlAAk~lG~ea~ 269 (311)
+= ....=||+=||..=..+-..+|+..-
T Consensus 131 ~A~~Ia~a~G~~G~N~eYL~~l~~~L~~~gp~i~ 164 (178)
T PF04752_consen 131 IARIIATASGPSGSNREYLFNLAEALRELGPGIR 164 (178)
T ss_pred HHHHHhheECcCcCCHHHHHHHHHHHHHhCCCCC
Confidence 21 34555888898887777777775433
No 3
>PHA03014 hypothetical protein; Provisional
Probab=97.90 E-value=9.2e-05 Score=65.31 Aligned_cols=132 Identities=11% Similarity=0.193 Sum_probs=94.3
Q ss_pred EEEeeccccChhcccccCC---CccceeEEEEcCceeeccccchhhhhcCCCCCCcccccccceeecCCeeEEEEEEEEe
Q 039538 88 SISGFGSLLSENSARSTFP---NLINFRVAKLHGFRRVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFEIK 164 (311)
Q Consensus 88 sI~GyGSLLse~SARsTFP---~l~nFR~a~l~G~RRVF~h~a~iff~RGIa~~~T~e~AsLsvEp~~g~~~vvsvFEI~ 164 (311)
-+|+|||=||....+..-| .-....+|++.||+=.|..... |.. +-.+++|..|..+-|+|.||+
T Consensus 4 ~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~~~--~~G----------a~ATIvp~~g~~V~Gvlw~i~ 71 (163)
T PHA03014 4 YYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYSKE--IDS----------VIASIKKDDNGIVFGILYEFN 71 (163)
T ss_pred EEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEeccCC--cCC----------ceEEEEECCCCEEEEEEEEeC
Confidence 4799999999999999999 8888889999966443431111 111 357999999999999999999
Q ss_pred ccccchhhhhhcchhhhhhhcc---c-eeeeeecccccCCCCCCCceeEEecCChHHHHHHHhcCChhhhhhhccccCcc
Q 039538 165 KIRGIKLEELCTMIPAFIKREH---E-FRFLAVSPETLDGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYFHHYGRYNID 240 (311)
Q Consensus 165 ~~~Gl~~eel~~~lpafieRE~---e-Y~~~~V~~~~Ldg~p~~~~AvlCar~SDe~y~~~rC~~~~e~y~~~~gr~~i~ 240 (311)
.+ ++.+|+..|- + |+.+.|.-..+++ ..-+.|- .|.++.=+..+
T Consensus 72 ~~----------dl~~LD~~EGvp~~~Y~~~~v~V~~~~~----~~~~~a~-----~Y~~~~~~~~~------------- 119 (163)
T PHA03014 72 ES----------IMKKFDKQEFIDKNIYKLAKMNVLDLED----EKIIEAQ-----AYKAILDDDNN------------- 119 (163)
T ss_pred HH----------HHHHHhhhcCCCcCceEEEEEEEEeCCC----CcEEEEE-----EEehhcCCCcc-------------
Confidence 99 9999999996 3 8887777754542 1123444 33111001001
Q ss_pred ccccCCccccHhHHHHHHHHHHHhc
Q 039538 241 KIWRDDILPCRVYLRHCVLAAKNLG 265 (311)
Q Consensus 241 ~IW~~dIlPcr~YLrhCvlAAk~lG 265 (311)
+- .+..|-..||+.++.||+.-|
T Consensus 120 -~~-~~~~Ps~~Yl~~I~~Ga~e~G 142 (163)
T PHA03014 120 -MF-YDAPNFNIYKDIIIDALIENN 142 (163)
T ss_pred -cc-cCCCChHHHHHHHHHHHHHhC
Confidence 00 345899999999999999877
No 4
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00014 Score=66.20 Aligned_cols=86 Identities=27% Similarity=0.423 Sum_probs=62.3
Q ss_pred CCCeEEEEeeccccChhcccccCCCccceeEEEEcCceeeccccchhhhhcCCCCCCcccccccceeecCCeeEEEEEEE
Q 039538 83 PDGLISISGFGSLLSENSARSTFPNLINFRVAKLHGFRRVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFE 162 (311)
Q Consensus 83 ~d~~IsI~GyGSLLse~SARsTFP~l~nFR~a~l~G~RRVF~h~a~iff~RGIa~~~T~e~AsLsvEp~~g~~~vvsvFE 162 (311)
+++ +-||||||||=.--- ...+-++|.++||+|-|=-.. ..-||-++.+.. |..|- .|-+.++.+|.
T Consensus 9 ~~~-~WVFgYGSLmW~P~f-----~~~e~~~a~~~G~~Rsfc~~s--~~~RGT~~~PGl-vl~L~----~GGsc~GvafR 75 (190)
T COG3703 9 PDE-LWVFGYGSLMWNPGF-----EFTEVRRATLHGYHRSFCLRS--TDHRGTAEQPGL-VLGLD----RGGSCEGVAYR 75 (190)
T ss_pred CCC-eEEEEecceeecCCc-----cccceeEEEEecceeEEEEEE--eeecCCcCCCce-EEEee----CCCcEEEEEEE
Confidence 344 999999999964321 256788999999999986433 347886655544 33332 88899999999
Q ss_pred Eeccccchhhhhhcchhhhhhhccc
Q 039538 163 IKKIRGIKLEELCTMIPAFIKREHE 187 (311)
Q Consensus 163 I~~~~Gl~~eel~~~lpafieRE~e 187 (311)
||.+ ..++ .+--|.+||--
T Consensus 76 ip~~---~~~~---v~~yL~~RE~~ 94 (190)
T COG3703 76 IPEA---HAEE---VLEYLREREMN 94 (190)
T ss_pred cCch---hhHH---HHHHHHHhhcc
Confidence 9966 2333 78899999984
No 5
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00066 Score=62.75 Aligned_cols=168 Identities=19% Similarity=0.210 Sum_probs=101.7
Q ss_pred ccCCCCeEEEEeeccccChhcccccCCCccceeEEEEcCceeeccccchhhhhcCCCCCCcccccccceeecCCeeEEEE
Q 039538 80 ITSPDGLISISGFGSLLSENSARSTFPNLINFRVAKLHGFRRVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVT 159 (311)
Q Consensus 80 ~~~~d~~IsI~GyGSLLse~SARsTFP~l~nFR~a~l~G~RRVF~h~a~iff~RGIa~~~T~e~AsLsvEp~~g~~~vvs 159 (311)
-+|+++.+=|||||||+=.- .| ....=+++-++||+|+|-. +++ .-||.+..... .+..+|.+...--++
T Consensus 3 ~~s~~~~lWVFGYGSLiW~P----gf-~y~~~~~gfI~Gy~RrF~q-~s~-dHRGtp~~PGR---v~TLi~~~e~~~wGv 72 (212)
T KOG3182|consen 3 TTSDPMALWVFGYGSLIWKP----GF-HYDESIPGFIKGYKRRFWQ-GST-DHRGTPEHPGR---VATLIPYEEAITWGV 72 (212)
T ss_pred CCCCCceEEEEeecceeecC----CC-Cccccchhhheehhhheec-ccc-ccCCCCCCCce---eEEeecCCcceEeeE
Confidence 45678899999999998532 22 2455568889999999964 233 47998777655 667778777777899
Q ss_pred EEEEeccccchhhhhhcchhhhhhhcc-ceeeeeeccccc--CCCCCCCceeEEecCChHHHHHHHhcCChhhhhhhccc
Q 039538 160 VFEIKKIRGIKLEELCTMIPAFIKREH-EFRFLAVSPETL--DGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYFHHYGR 236 (311)
Q Consensus 160 vFEI~~~~Gl~~eel~~~lpafieRE~-eY~~~~V~~~~L--dg~p~~~~AvlCar~SDe~y~~~rC~~~~e~y~~~~gr 236 (311)
+|.|+.. -.- +-+.-+.-||- ||.+..|..-.- ...|.-..+++|..-.|.+|.. -+..-|. -.+
T Consensus 73 ay~V~g~---~~~---~~l~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp~N~~yl--Gp~ple~----iAr 140 (212)
T KOG3182|consen 73 AYRVRGK---QAS---EVLEYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATPDNEYYL--GPAPLEE----IAR 140 (212)
T ss_pred EEEecch---hHH---HHHHHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecCCCcccc--CCccHHH----HHH
Confidence 9999764 111 13445666776 787777766322 2224334456666444433322 0100000 000
Q ss_pred cCccccc--cCCccccHhHHHHHHHHHHHhcHHHHHhhh
Q 039538 237 YNIDKIW--RDDILPCRVYLRHCVLAAKNLGDEAYNNFL 273 (311)
Q Consensus 237 ~~i~~IW--~~dIlPcr~YLrhCvlAAk~lG~ea~~~FL 273 (311)
+|- +..==||+-||.-=-.|-..++..+-|..|
T Consensus 141 ----qI~t~~GpsG~N~eYLf~La~am~~l~p~~~D~hl 175 (212)
T KOG3182|consen 141 ----QIVTARGPSGPNREYLFNLAKAMRQLFPGAEDEHL 175 (212)
T ss_pred ----HHHhccCCCCCcHHHHHHHHHHHHHcCCCchhHHH
Confidence 122 455568999998766666667665555433
No 6
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.0015 Score=59.28 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=77.3
Q ss_pred EEEEeeccccChhcccccCCCccceeEEEEcCceeeccc-cchhhhhcCCCCCCcccccccceeecCCeeEEEEEEEEec
Q 039538 87 ISISGFGSLLSENSARSTFPNLINFRVAKLHGFRRVFAH-VAPIFFERGIAKPKTKEISSLSVEPCEGQTLIVTVFEIKK 165 (311)
Q Consensus 87 IsI~GyGSLLse~SARsTFP~l~nFR~a~l~G~RRVF~h-~a~iff~RGIa~~~T~e~AsLsvEp~~g~~~vvsvFEI~~ 165 (311)
..+|+|||=|=.+--+-.=|.-.-|=+|++.+||=-|+. .+.| +=+.-.+.|.+|..+-++|.++++
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W------------~G~vATI~~t~GdeVWG~vWKm~~ 91 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGW------------SGSVATIVPTQGDEVWGTVWKMDL 91 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeecccccccc------------ccceeEEecCCCCeEEEEEEEccc
Confidence 689999997666656666666677778999999999985 2222 224567899999999999999999
Q ss_pred cccchhhhhhcchhhhhhhc---cc-eeeeeecccccCCCCCCC
Q 039538 166 IRGIKLEELCTMIPAFIKRE---HE-FRFLAVSPETLDGKPFTN 205 (311)
Q Consensus 166 ~~Gl~~eel~~~lpafieRE---~e-Y~~~~V~~~~Ldg~p~~~ 205 (311)
+ ++|.++|.| .| |..+.|....-.|+..++
T Consensus 92 s----------nl~slDeQEgv~~G~Y~~~~V~V~t~eg~~itc 125 (193)
T KOG4059|consen 92 S----------NLPSLDEQEGVSQGIYEPRTVYVKTHEGESITC 125 (193)
T ss_pred c----------cCccchhhhcccccceEEEEEEEecCCCceeeh
Confidence 9 999999999 78 999999887777765443
No 7
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=95.73 E-value=0.019 Score=44.18 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=54.5
Q ss_pred EEeeccccChhcccccCCCc---cceeEEEEcCceeeccccchhhhhcCCCCCCcccccccceeecCCe-eEEEEEEEEe
Q 039538 89 ISGFGSLLSENSARSTFPNL---INFRVAKLHGFRRVFAHVAPIFFERGIAKPKTKEISSLSVEPCEGQ-TLIVTVFEIK 164 (311)
Q Consensus 89 I~GyGSLLse~SARsTFP~l---~nFR~a~l~G~RRVF~h~a~iff~RGIa~~~T~e~AsLsvEp~~g~-~~vvsvFEI~ 164 (311)
||-||||++.......++.. ...+.+.+. .+.+. .+...| .+.|+++. .+.|.||+|+
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~yP--------~l~~~~~~~~V~G~l~~v~ 62 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLG--GRYLY--------GGGGYP--------ALVPGEGSGRVEGELYEVD 62 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEE--EEEEE--------TTSSCE--------EEESCTTSSEEEEEEEEE-
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEE--eEEEe--------CCCCCC--------EEEEcCCCCEEEEEEEEEC
Confidence 68999999998887776531 122233333 12211 111222 45566666 8999999998
Q ss_pred ccccchhhhhhcchhhhhhhc---cceeeeeecccccCCC
Q 039538 165 KIRGIKLEELCTMIPAFIKRE---HEFRFLAVSPETLDGK 201 (311)
Q Consensus 165 ~~~Gl~~eel~~~lpafieRE---~eY~~~~V~~~~Ldg~ 201 (311)
.+ +|..|++-| ..|++..|....-+|+
T Consensus 63 ~~----------~l~~LD~~E~~~~~Y~R~~v~v~~~~g~ 92 (102)
T PF06094_consen 63 DE----------ELARLDEYEGEGSLYRRVRVPVELGDGE 92 (102)
T ss_dssp HH----------HHHHHHHHTTTTTSEEEEEEEEECCTSS
T ss_pred HH----------HHHhhHhhcCCCCceEEEEEEEEeCCCC
Confidence 88 788888886 3899988877655553
No 8
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=92.86 E-value=0.26 Score=38.09 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEEEEEEEeccccchhhhhhcchhhhhhhcc----ceeeeeecccccCCCCCCCceeEEecCChHHHHHHHhcCChhhhh
Q 039538 156 LIVTVFEIKKIRGIKLEELCTMIPAFIKREH----EFRFLAVSPETLDGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYF 231 (311)
Q Consensus 156 ~vvsvFEI~~~~Gl~~eel~~~lpafieRE~----eY~~~~V~~~~Ldg~p~~~~AvlCar~SDe~y~~~rC~~~~e~y~ 231 (311)
+.|.|+||+.+ +++.|+.+|- .|+...|.-..-||++ +.|. .|++ .+
T Consensus 2 V~Gvly~l~~~----------d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~~-----~~a~-----tY~~-----~~---- 52 (83)
T PF13772_consen 2 VWGVLYELSEE----------DLESLDRYEGVPIGAYRRIEVTVSTADGKP-----VEAF-----TYVA-----NP---- 52 (83)
T ss_dssp EEEEEEEEEGG----------GHHHHHHHTTTTTTSEEEEEEEEEETTCEE-----EEEE-----EEEE-----SS----
T ss_pred EEEEEEEECHH----------HHHHHHHhcCCCCCCEEEEEEEEEcCCCCE-----EEEE-----EEEc-----CC----
Confidence 57899999999 9999999997 5999988886656543 3343 2222 11
Q ss_pred hhccccCccccccCCccccHhHHHHHHHHHHHhc
Q 039538 232 HHYGRYNIDKIWRDDILPCRVYLRHCVLAAKNLG 265 (311)
Q Consensus 232 ~~~gr~~i~~IW~~dIlPcr~YLrhCvlAAk~lG 265 (311)
+.+ ..|..-||.+++.||+..|
T Consensus 53 -----------~~~-~~Ps~~Yl~~i~~GA~e~g 74 (83)
T PF13772_consen 53 -----------KPE-GPPSDRYLDLILRGAREHG 74 (83)
T ss_dssp -----------EEE-----HHHHHHHHHHHHHCT
T ss_pred -----------CCC-CCCCHHHHHHHHHHHHHcC
Confidence 112 6699999999999998655
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=70.53 E-value=12 Score=32.41 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=28.2
Q ss_pred eecCCeeEEEEEEEEeccccchhhhhhcchhhhhhhcc--ceeeeeecc
Q 039538 149 EPCEGQTLIVTVFEIKKIRGIKLEELCTMIPAFIKREH--EFRFLAVSP 195 (311)
Q Consensus 149 Ep~~g~~~vvsvFEI~~~~Gl~~eel~~~lpafieRE~--eY~~~~V~~ 195 (311)
-|.++ .+.+-|++|+++ .|++|++=|. .|+++.|..
T Consensus 48 ~~g~~-~V~Gevy~~d~~----------~l~~LDelE~~~~y~r~~v~v 85 (120)
T COG2105 48 VPGEG-KVHGEVYRIDEE----------TLEALDELEDYGGYYRREVEV 85 (120)
T ss_pred cCCCC-EEEEEEEEECHH----------HHhhhhhhhccCceEEEEEEE
Confidence 34455 899999999988 8888888887 458887733
No 10
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.21 E-value=26 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=17.6
Q ss_pred cCCCCCcccccCCCCeEEEEeeccc
Q 039538 71 LNDESDFYQITSPDGLISISGFGSL 95 (311)
Q Consensus 71 ~~~~~df~~~~~~d~~IsI~GyGSL 95 (311)
+..+.|++-| .++.|.|+||||=
T Consensus 7 yd~da~l~~L--kgK~iaIIGYGsQ 29 (338)
T COG0059 7 YDEDADLDLL--KGKKVAIIGYGSQ 29 (338)
T ss_pred ecccCChhHh--cCCeEEEEecChH
Confidence 4566777744 4789999999994
No 11
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=30.68 E-value=24 Score=29.21 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=18.0
Q ss_pred CCCeEEEEeeccc-cChhccccc
Q 039538 83 PDGLISISGFGSL-LSENSARST 104 (311)
Q Consensus 83 ~d~~IsI~GyGSL-Lse~SARsT 104 (311)
.++.|.|.|||++ +.++.||..
T Consensus 39 ~G~~V~l~gFG~F~v~~R~aR~G 61 (94)
T COG0776 39 KGERVELRGFGTFEVRERAARTG 61 (94)
T ss_pred cCCeEEEeeeeeeEeeccCCCCC
Confidence 6889999999997 566777766
No 12
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=26.09 E-value=36 Score=28.45 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=21.5
Q ss_pred chHHHHHhhcCCCCCCCCCCchhhhhcC
Q 039538 283 TTIREYLATTGAGIMEEEPPESLKTRYG 310 (311)
Q Consensus 283 TTireyL~~~~~~Im~e~PP~~L~~RY~ 310 (311)
..+|+.+--++|.+..+..|.+|+.+||
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g 108 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFG 108 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhc
Confidence 3456666556777777889999999998
No 13
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=24.06 E-value=47 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=19.8
Q ss_pred cCCCCCcccccCCCCeEEEEeeccccC
Q 039538 71 LNDESDFYQITSPDGLISISGFGSLLS 97 (311)
Q Consensus 71 ~~~~~df~~~~~~d~~IsI~GyGSLLs 97 (311)
+..+.|+..|. ++.|.|+||||.=.
T Consensus 5 ~~~d~~~~~Lk--gKtVGIIG~GsIG~ 29 (335)
T PRK13403 5 YEKDANVELLQ--GKTVAVIGYGSQGH 29 (335)
T ss_pred ccccCChhhhC--cCEEEEEeEcHHHH
Confidence 34677888887 88899999998633
No 14
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=52 Score=30.18 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=42.0
Q ss_pred cceeecCCeeEEEEEEEEeccccchhhhhhcchhhhhhhccceeeeeecccccCCCCCCCceeEEecC
Q 039538 146 LSVEPCEGQTLIVTVFEIKKIRGIKLEELCTMIPAFIKREHEFRFLAVSPETLDGKPFTNRAVLCARS 213 (311)
Q Consensus 146 LsvEp~~g~~~vvsvFEI~~~~Gl~~eel~~~lpafieRE~eY~~~~V~~~~Ldg~p~~~~AvlCar~ 213 (311)
|=-.|..|+-+.+-|.||++. ||...|--++.|+..+||- +.|.-++-.+...+..+|+|+=|
T Consensus 58 LLnkpGsG~~V~GElY~Vd~r-mL~~LD~lE~~~~~Y~R~~----i~v~~~ede~eg~g~~~v~c~~Y 120 (168)
T KOG4450|consen 58 LLNKPGSGYHVEGELYEVDER-MLSRLDELEGCPNHYEREP----IRVIEEEDEEEGEGGVTVQCAVY 120 (168)
T ss_pred EEcCCCCcceeeeEEEEeCHH-HHhhhHhhcccHHHhhhhh----hHHHHhhhhcccCCCceeeehhH
Confidence 334577899999999999985 8888887777788888873 11222222222223468999844
No 15
>KOG2425 consensus Nuclear protein involved in cell morphogenesis and cell surface growth [General function prediction only]
Probab=22.95 E-value=96 Score=33.17 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=41.2
Q ss_pred CccccccCCccccHhHHHHHHHHHHHhcHHHHHhhhhcccccCCcchHHHHHhhcCCCCCCC
Q 039538 238 NIDKIWRDDILPCRVYLRHCVLAAKNLGDEAYNNFLDHTSLGDCKTTIREYLATTGAGIMEE 299 (311)
Q Consensus 238 ~i~~IW~~dIlPcr~YLrhCvlAAk~lG~ea~~~FLdtTyLaDr~TTireyL~~~~~~Im~e 299 (311)
++-|||++-|--...-+.-=+.-+-.-=+.++++|+||-++.-----+|.|+.+..++|||-
T Consensus 240 ~~~k~~~sli~~~e~~~aEL~~v~~E~l~~~ldSf~dd~~~~~~~edlr~~qeewk~~~~e~ 301 (599)
T KOG2425|consen 240 KAIKAWNSLIPRVECVLAELVGVTCENLEAVLDSFLDDGFLVPTFEDLRALQEEWKDGQTEV 301 (599)
T ss_pred hHHHHhhchhhhhHHHHHHHHHHHHHhhhhhhhhhhccccccccHHHHHHHHHHhcccchhc
Confidence 56788876554333222222222222336789999999998765567999999999999974
No 16
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=20.90 E-value=52 Score=29.93 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.6
Q ss_pred CCCeEEEEeeccc
Q 039538 83 PDGLISISGFGSL 95 (311)
Q Consensus 83 ~d~~IsI~GyGSL 95 (311)
.++.|.|+||||.
T Consensus 3 ~~k~IAViGyGsQ 15 (165)
T PF07991_consen 3 KGKTIAVIGYGSQ 15 (165)
T ss_dssp CTSEEEEES-SHH
T ss_pred CCCEEEEECCChH
Confidence 4789999999997
No 17
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=20.47 E-value=38 Score=28.39 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=19.8
Q ss_pred hHHHHHhhcCCCCCCCCCCchhhhhcC
Q 039538 284 TIREYLATTGAGIMEEEPPESLKTRYG 310 (311)
Q Consensus 284 TireyL~~~~~~Im~e~PP~~L~~RY~ 310 (311)
..|+.+-.++|.+.....|.+|+.+||
T Consensus 81 ~~r~l~Gp~~p~~A~~~~p~slR~~fg 107 (132)
T cd04416 81 EWRELMGPTDPEEAKEEKPDSLRAQFA 107 (132)
T ss_pred HHHHHhCCCChHHhhccCCCChHHHhc
Confidence 345555455677777778999999998
No 18
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=20.14 E-value=44 Score=28.37 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.6
Q ss_pred cchHHHHHhhcCCCCCCCCCCchhhhhcC
Q 039538 282 KTTIREYLATTGAGIMEEEPPESLKTRYG 310 (311)
Q Consensus 282 ~TTireyL~~~~~~Im~e~PP~~L~~RY~ 310 (311)
....|+.+-.++|....+..|.+|+.+||
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg 109 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYG 109 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhc
Confidence 34556666556788888889999999997
Done!