Query 039539
Match_columns 484
No_of_seqs 260 out of 1477
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:43:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 3.4E-63 7.3E-68 516.6 23.7 260 4-266 150-410 (545)
2 cd02663 Peptidase_C19G A subfa 100.0 9.8E-52 2.1E-56 417.5 26.6 256 5-264 21-300 (300)
3 cd02668 Peptidase_C19L A subfa 100.0 4.9E-49 1.1E-53 401.9 25.8 247 5-264 51-324 (324)
4 cd02660 Peptidase_C19D A subfa 100.0 1.7E-48 3.8E-53 397.0 26.1 257 4-264 44-328 (328)
5 cd02661 Peptidase_C19E A subfa 100.0 9.5E-48 2.1E-52 385.5 26.6 258 4-264 43-304 (304)
6 cd02664 Peptidase_C19H A subfa 100.0 3E-47 6.6E-52 389.5 22.0 235 5-264 40-327 (327)
7 cd02667 Peptidase_C19K A subfa 100.0 1.1E-46 2.5E-51 377.0 23.6 216 26-264 31-279 (279)
8 cd02657 Peptidase_C19A A subfa 100.0 3.2E-46 7E-51 376.9 24.0 243 4-264 42-305 (305)
9 cd02671 Peptidase_C19O A subfa 100.0 8E-46 1.7E-50 379.9 26.5 216 23-264 82-332 (332)
10 cd02659 peptidase_C19C A subfa 100.0 1.1E-44 2.4E-49 369.8 24.9 251 5-268 44-334 (334)
11 cd02658 Peptidase_C19B A subfa 100.0 1.6E-44 3.5E-49 365.6 25.0 235 4-264 43-311 (311)
12 cd02669 Peptidase_C19M A subfa 100.0 1.6E-42 3.4E-47 368.1 26.2 249 5-264 162-440 (440)
13 cd02673 Peptidase_C19Q A subfa 100.0 7.6E-42 1.6E-46 336.5 20.1 225 26-264 13-245 (245)
14 COG5077 Ubiquitin carboxyl-ter 100.0 9.9E-44 2.1E-48 376.6 1.8 267 2-283 231-528 (1089)
15 cd02674 Peptidase_C19R A subfa 100.0 8.2E-41 1.8E-45 323.2 20.8 200 45-264 21-230 (230)
16 cd02662 Peptidase_C19F A subfa 100.0 6.7E-40 1.4E-44 321.5 20.9 178 45-264 33-240 (240)
17 cd02665 Peptidase_C19I A subfa 100.0 2.8E-40 6E-45 321.2 16.7 197 45-264 21-228 (228)
18 KOG1866 Ubiquitin carboxyl-ter 100.0 4.4E-42 9.6E-47 363.9 1.9 256 6-274 141-442 (944)
19 COG5560 UBP12 Ubiquitin C-term 100.0 3.6E-40 7.7E-45 345.1 12.9 259 6-267 314-823 (823)
20 COG5533 UBP5 Ubiquitin C-termi 100.0 5.9E-39 1.3E-43 313.1 17.3 248 7-266 122-414 (415)
21 KOG1868 Ubiquitin C-terminal h 100.0 1.1E-37 2.3E-42 338.2 13.4 262 6-270 349-650 (653)
22 KOG4598 Putative ubiquitin-spe 100.0 7.2E-39 1.6E-43 336.5 1.3 239 23-274 122-449 (1203)
23 KOG1867 Ubiquitin-specific pro 100.0 7.7E-37 1.7E-41 325.4 15.6 262 3-269 203-487 (492)
24 cd02257 Peptidase_C19 Peptidas 100.0 9.6E-36 2.1E-40 284.5 21.7 215 45-264 21-255 (255)
25 KOG0944 Ubiquitin-specific pro 100.0 1.3E-34 2.7E-39 305.7 15.1 244 4-266 351-762 (763)
26 PF00443 UCH: Ubiquitin carbox 100.0 4.4E-33 9.6E-38 270.5 17.6 203 5-263 49-269 (269)
27 KOG1864 Ubiquitin-specific pro 100.0 7E-33 1.5E-37 299.6 13.4 243 23-267 299-573 (587)
28 cd02666 Peptidase_C19J A subfa 100.0 6.5E-33 1.4E-37 285.2 12.4 224 6-264 65-343 (343)
29 COG5207 UBP14 Isopeptidase T [ 100.0 3.5E-32 7.6E-37 279.2 14.3 248 4-266 347-749 (749)
30 KOG1863 Ubiquitin carboxyl-ter 100.0 5.8E-32 1.3E-36 312.6 7.4 259 4-277 212-496 (1093)
31 cd02672 Peptidase_C19P A subfa 100.0 3.5E-30 7.6E-35 256.9 18.5 178 49-264 69-268 (268)
32 cd02670 Peptidase_C19N A subfa 100.0 1.1E-30 2.4E-35 255.9 14.4 175 45-264 22-241 (241)
33 KOG1873 Ubiquitin-specific pro 100.0 9.3E-32 2E-36 286.5 3.8 144 120-266 678-877 (877)
34 KOG1870 Ubiquitin C-terminal h 100.0 5.2E-30 1.1E-34 289.9 12.0 256 7-267 296-842 (842)
35 PF13423 UCH_1: Ubiquitin carb 100.0 1.3E-27 2.8E-32 241.2 19.6 238 3-245 37-295 (295)
36 KOG1871 Ubiquitin-specific pro 99.8 2.4E-21 5.2E-26 195.4 8.9 221 40-267 138-420 (420)
37 KOG1872 Ubiquitin-specific pro 99.8 5.2E-21 1.1E-25 197.4 5.0 251 5-267 151-470 (473)
38 KOG2026 Spindle pole body prot 99.8 6.4E-19 1.4E-23 177.3 13.6 241 4-266 173-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.5 1.9E-14 4.1E-19 157.3 9.2 255 4-263 536-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 97.8 3.6E-05 7.9E-10 75.3 5.8 131 78-244 120-252 (275)
41 KOG1887 Ubiquitin carboxyl-ter 94.3 0.0063 1.4E-07 68.1 -2.3 199 45-253 548-771 (806)
42 KOG3556 Familial cylindromatos 85.8 0.55 1.2E-05 50.6 2.6 31 157-187 517-549 (724)
43 PF08715 Viral_protease: Papai 85.3 28 0.00062 36.0 14.7 69 10-104 132-200 (320)
44 PF14353 CpXC: CpXC protein 67.5 9.8 0.00021 33.6 4.8 51 92-153 1-51 (128)
45 PF05408 Peptidase_C28: Foot-a 64.9 13 0.00027 35.4 5.1 42 223-270 138-179 (193)
46 COG3478 Predicted nucleic-acid 56.9 8.1 0.00018 30.4 2.0 35 139-173 3-39 (68)
47 PRK03824 hypA hydrogenase nick 31.6 1.5E+02 0.0034 26.5 6.4 50 88-149 66-116 (135)
48 KOG2906 RNA polymerase III sub 27.0 1.4E+02 0.0031 25.6 4.9 72 86-161 15-86 (105)
49 PF13002 LDB19: Arrestin_N ter 27.0 71 0.0015 30.6 3.5 66 141-214 23-88 (191)
50 PF10264 Stork_head: Winged he 25.0 2.6E+02 0.0057 23.0 6.0 54 5-62 10-63 (80)
51 cd04474 RPA1_DBD_A RPA1_DBD_A: 24.8 4E+02 0.0086 22.4 7.5 33 234-266 67-99 (104)
52 PF02099 Josephin: Josephin; 23.5 98 0.0021 28.6 3.7 34 207-248 98-131 (157)
53 PF09855 DUF2082: Nucleic-acid 22.7 55 0.0012 25.8 1.6 33 141-173 1-35 (64)
54 PF03292 Pox_P4B: Poxvirus P4B 22.6 1.4E+02 0.003 33.5 5.2 71 163-244 479-569 (666)
55 PF10748 DUF2531: Protein of u 21.9 1E+02 0.0022 27.9 3.3 34 204-245 34-67 (132)
56 PF08770 SoxZ: Sulphur oxidati 20.7 2.9E+02 0.0064 23.5 5.8 58 205-269 14-79 (100)
57 PF01473 CW_binding_1: Putativ 20.4 1.2E+02 0.0025 17.6 2.3 14 229-243 3-16 (19)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-63 Score=516.60 Aligned_cols=260 Identities=48% Similarity=0.844 Sum_probs=250.9
Q ss_pred cchHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 039539 4 LHSTFDVVSCLILNAKDGSY-PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIG 82 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~~-~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~ 82 (484)
-.|++|+|+.++.......+ +|+|..|++.|+.|+..|+.|+|+||||||+++||.|+..|+.......+..+++++|+
T Consensus 150 ~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~ 229 (545)
T KOG1865|consen 150 KFCMLCTFQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVH 229 (545)
T ss_pred CeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehh
Confidence 35889999999999888776 99999999999999999999999999999999999999999977777788889999999
Q ss_pred cceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecC
Q 039539 83 LTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEP 162 (484)
Q Consensus 83 ~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP 162 (484)
++|+|.++++++|..|+++|.++|++++|+|+|. ++.+|++||++|+++|.|+|+|+|.|++|+++++|.|+++|.++|
T Consensus 230 ~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raP 308 (545)
T KOG1865|consen 230 QIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAP 308 (545)
T ss_pred hhhccchhhceecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCC
Confidence 9999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeeccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcC
Q 039539 163 NILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDD 242 (484)
Q Consensus 163 ~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnD 242 (484)
+||+|+||||+.+.+.||++.|.||+.|||.+||..+.+.+.+|.|||||||.|++ +++|||+||||..+|.||+|||
T Consensus 309 nVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~--~~~GHY~cYvks~~g~Wy~~DD 386 (545)
T KOG1865|consen 309 NVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTS--CHSGHYFCYVKSQNGQWYKMDD 386 (545)
T ss_pred ceEEEeeehhccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEecccc--ccCCceEEEEEcCCCceEEccC
Confidence 99999999999999999999999999999999999888899999999999999964 8999999999999999999999
Q ss_pred CcceeeCcccccCCCcEEEEEEec
Q 039539 243 STVIPVKLERVLSEEAYMLLYARH 266 (484)
Q Consensus 243 s~V~~vs~~~v~s~~AYmLfY~R~ 266 (484)
+.|+.++.+.|+++.||||||.|.
T Consensus 387 S~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 387 SEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred ceeeeccccceecccceEEEEEee
Confidence 999999999999999999999998
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.8e-52 Score=417.50 Aligned_cols=256 Identities=29% Similarity=0.504 Sum_probs=228.4
Q ss_pred chHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC---------C
Q 039539 5 HSTFDVVSCLILNAKDGS---YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK---------G 72 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~---~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~---------~ 72 (484)
.+++++|+.||.+|+... .+++|..|+.+|+...+.|..++||||||||..|||.|++++....... .
T Consensus 21 ~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~ 100 (300)
T cd02663 21 ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNN 100 (300)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 367899999999998764 3699999999999999999999999999999999999999886543211 0
Q ss_pred CCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeE
Q 039539 73 KIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKA 152 (484)
Q Consensus 73 ~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a 152 (484)
......++|.++|+|++.+.++|..|+..+.+.|+|++|+|+|++ ..+|+++|+.|+.+|.++|+|+|.|++|+.++.|
T Consensus 101 ~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a 179 (300)
T cd02663 101 NAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEA 179 (300)
T ss_pred cCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeE
Confidence 112346789999999999999999999999999999999999997 4799999999999999999999999999999999
Q ss_pred EEEEEEeecCCeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEE
Q 039539 153 KKKLTVLEEPNILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVC 228 (484)
Q Consensus 153 ~k~~~i~~lP~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYva 228 (484)
.|+..|.++|+||+|||+||.++. ..|+++.|.||..|+|..+..........|+|+|||+|.| .++++|||+|
T Consensus 180 ~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G--~~~~~GHY~a 257 (300)
T cd02663 180 EKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIG--GGPNHGHYVS 257 (300)
T ss_pred EEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEec--CCCCCCceEE
Confidence 999999999999999999998763 4799999999999999887655555567999999999999 3478999999
Q ss_pred EEEcCCCcEEEEcCCcceeeCccccc--------CCCcEEEEEE
Q 039539 229 YVKNSHEEWFRIDDSTVIPVKLERVL--------SEEAYMLLYA 264 (484)
Q Consensus 229 yvk~~~~~W~~fnDs~V~~vs~~~v~--------s~~AYmLfY~ 264 (484)
|+|. +++||+|||+.|++++.++|. +.+||||||+
T Consensus 258 ~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 258 IVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 9998 899999999999999998886 5899999995
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.9e-49 Score=401.88 Aligned_cols=247 Identities=29% Similarity=0.551 Sum_probs=220.8
Q ss_pred chHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccc
Q 039539 5 HSTFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGL 83 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~ 83 (484)
.++.++|++||.+|+.+. .+++|..|+..+. |..++||||+||+.+|||.|++++..... ....++|.+
T Consensus 51 ~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----~~~~~~i~~ 120 (324)
T cd02668 51 QTIIDQLQLIFAQLQFGNRSVVDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----PDLKNIVQD 120 (324)
T ss_pred chHHHHHHHHHHHHHhCCCceEChHHHHHHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccC-----Ccccchhhh
Confidence 579999999999999875 4899999999884 77889999999999999999998754311 123478999
Q ss_pred ceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCC
Q 039539 84 TFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPN 163 (484)
Q Consensus 84 lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~ 163 (484)
+|+|++...++|..|+..+.+.|+|++|+|+|++ ..+|+++|+.|+.+|.++|+|+|.|++|+.++.|.|+..|.++|+
T Consensus 121 ~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~ 199 (324)
T cd02668 121 LFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPP 199 (324)
T ss_pred hcceEEEEEEEeCCCCCccccccccEEEEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCC
Confidence 9999999999999999999999999999999996 479999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEE
Q 039539 164 ILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWF 238 (484)
Q Consensus 164 VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~ 238 (484)
||+|||+||.++. ..|+++.|.||+.|||.+|+.........|+|+|||+|.| .++++|||+||+|+. +++||
T Consensus 200 iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G--~~~~~GHY~~~~k~~~~~~W~ 277 (324)
T cd02668 200 TLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQG--VSAYSGHYIAHIKDEQTGEWY 277 (324)
T ss_pred eEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccccCCCcEEEEEEEEEEcC--CCCCCEeeEEEEECCCCCcEE
Confidence 9999999998763 3799999999999999999876666678999999999999 357899999999986 58999
Q ss_pred EEcCCcceeeCcccc---------------------cCCCcEEEEEE
Q 039539 239 RIDDSTVIPVKLERV---------------------LSEEAYMLLYA 264 (484)
Q Consensus 239 ~fnDs~V~~vs~~~v---------------------~s~~AYmLfY~ 264 (484)
+|||+.|++++.+.+ .+..||||||+
T Consensus 278 ~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 278 KFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 999999999977654 35699999995
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-48 Score=396.96 Aligned_cols=257 Identities=32% Similarity=0.500 Sum_probs=228.6
Q ss_pred cchHHHHHHHHHHHhhCC--CCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 039539 4 LHSTFDVVSCLILNAKDG--SYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLI 81 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~--~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI 81 (484)
..|+.|+|++||.+|+.. ..++.|..|+..+....+.|.++.|||||||+.+|||.|++++..............++|
T Consensus 44 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i 123 (328)
T cd02660 44 NSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCII 123 (328)
T ss_pred cccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCcee
Confidence 468999999999999544 348999999999999888999999999999999999999998765443222223345789
Q ss_pred ccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc--------------CcHHHHHHhhhcceeecCCCeeecCCCC
Q 039539 82 GLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI--------------GTLEEALAQFTASEILVGENKYYCSRCK 147 (484)
Q Consensus 82 ~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~--------------~sLee~L~~~~~~E~Ldg~nky~C~~C~ 147 (484)
.++|+|.+.+.++|..|++.+.+.|+|++|+|+|+... .+|+++|+.|+.+|.+++.| |.|++|+
T Consensus 124 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~ 202 (328)
T cd02660 124 HQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCG 202 (328)
T ss_pred EEecccEEEeeeEcCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCC
Confidence 99999999999999999999999999999999998642 79999999999999999888 9999999
Q ss_pred ceeeEEEEEEEeecCCeEEEEEeeeccCC---ccccccEEEcCCcccCCcCcCC---------CCCCCCeEEEEEEEEEe
Q 039539 148 SYEKAKKKLTVLEEPNILTIVLKRFESGN---FGKLNKSVWFPEVLNMAPYMSR---------TGDGSPMYSLYAVVVHL 215 (484)
Q Consensus 148 ~~~~a~k~~~i~~lP~VLiI~LkRF~~~~---~~Ki~~~V~fPe~LdL~~y~~~---------~~~~~~~Y~L~aVVvH~ 215 (484)
.++.+.++..|.++|+||+|||+||.++. ..|+++.|.||+.|||.+|+.. .......|+|+|||+|.
T Consensus 203 ~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~ 282 (328)
T cd02660 203 STQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHK 282 (328)
T ss_pred CccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEee
Confidence 99999999999999999999999999765 3799999999999999999874 23456699999999999
Q ss_pred ecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 216 DVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 216 G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
| +..+|||+||+|..+++||+|||+.|+++++++|+..+||||||+
T Consensus 283 G---~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 283 G---TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred c---cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 9 356899999999877999999999999999999999999999995
No 5
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.5e-48 Score=385.49 Aligned_cols=258 Identities=46% Similarity=0.780 Sum_probs=233.5
Q ss_pred cchHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC---CCCccccc
Q 039539 4 LHSTFDVVSCLILNAKDG-SYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK---GKIAEETT 79 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~-~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~---~~~~~~~s 79 (484)
..|++|+|+.++.++... ...+.|..|...+..+.+.|..+.||||+|||.+|||.|++++....... .......+
T Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (304)
T cd02661 43 GFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETT 122 (304)
T ss_pred cchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCC
Confidence 458899999999988654 56899999999999999999999999999999999999998875543221 12233457
Q ss_pred ccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEe
Q 039539 80 LIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVL 159 (484)
Q Consensus 80 iI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~ 159 (484)
+|.++|+|++.+.++|..|+..+.+.|+|+.|+|+|++. .+|+++|+.++.+|.++++++|.|++|++++.+.++..|.
T Consensus 123 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~-~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~ 201 (304)
T cd02661 123 LVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA-DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIH 201 (304)
T ss_pred hhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC-CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEe
Confidence 899999999999999999999999999999999999964 7999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEeeeccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEE
Q 039539 160 EEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFR 239 (484)
Q Consensus 160 ~lP~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~ 239 (484)
++|++|+|||+||.++...|+++.|.||+.|+|.+|+.........|+|+|||+|.| ..+.+|||++|+|..+++||+
T Consensus 202 ~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G--~~~~~GHY~~~~~~~~~~W~~ 279 (304)
T cd02661 202 RAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSG--FSPHSGHYYCYVKSSNGKWYN 279 (304)
T ss_pred cCCcEEEEEEeccccCCccccCCeEecCCeechhhccccCCCCCceeeEEEEEEECC--CCCCCcCCEEEEECCCCCEEE
Confidence 999999999999998866899999999999999999987667778999999999999 345899999999988899999
Q ss_pred EcCCcceeeCcccccCCCcEEEEEE
Q 039539 240 IDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 240 fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
|||+.|+++++++|+++.||||||.
T Consensus 280 ~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 280 MDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred EeCCeeEECCHHHhcCCCcEEEEeC
Confidence 9999999999999999999999994
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-47 Score=389.53 Aligned_cols=235 Identities=31% Similarity=0.549 Sum_probs=207.9
Q ss_pred chHHHHHHHHHHHhhCC-CCCcCHHH-HHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 039539 5 HSTFDVVSCLILNAKDG-SYPVSPIG-ILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIG 82 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~-~~~isP~~-~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~ 82 (484)
.++.++|+.|+..|... ..++.|.. |+..+. .+.|..++|||||||+..|||.|+ ++|.
T Consensus 40 ~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~-----------------~~i~ 100 (327)
T cd02664 40 QSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWFTPGSQQDCSEYLRYLLDRLH-----------------TLIE 100 (327)
T ss_pred chHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--ccccCCCCcCCHHHHHHHHHHHHH-----------------HHHH
Confidence 46788999999988665 45777776 666543 467899999999999999999998 2488
Q ss_pred cceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecC
Q 039539 83 LTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEP 162 (484)
Q Consensus 83 ~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP 162 (484)
++|+|++.+.++|..|+.++.+.|+|.+|+|+|+ +|+++|+.|+.+|.++|+|+|.|++|+.++.|.|+..|.++|
T Consensus 101 ~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~----sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP 176 (327)
T cd02664 101 KMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP----SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAP 176 (327)
T ss_pred hhCcEEeEeEEEcCCCCCEecccccceeeecCCC----CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCC
Confidence 8999999999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCC-------------------CCCCCeEEEEEEEEEeecCC
Q 039539 163 NILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRT-------------------GDGSPMYSLYAVVVHLDVTN 219 (484)
Q Consensus 163 ~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~-------------------~~~~~~Y~L~aVVvH~G~~~ 219 (484)
+||+|||+||.++. ..|+++.|.||+.|||..++... ......|+|+|||+|.| .
T Consensus 177 ~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G--~ 254 (327)
T cd02664 177 EYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSG--Y 254 (327)
T ss_pred hhhEEEeeeeEEccccCcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEcc--C
Confidence 99999999998763 37999999999999999886311 12356999999999999 3
Q ss_pred CCCCceEEEEEEcCC---------------------CcEEEEcCCcceeeCcccccC-------CCcEEEEEE
Q 039539 220 ATFSGHYVCYVKNSH---------------------EEWFRIDDSTVIPVKLERVLS-------EEAYMLLYA 264 (484)
Q Consensus 220 ~~~sGHYvayvk~~~---------------------~~W~~fnDs~V~~vs~~~v~s-------~~AYmLfY~ 264 (484)
++++|||+||+|... ++||+|||+.|++++.++|.+ .+||||||+
T Consensus 255 ~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 255 SSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 578999999999754 789999999999999999986 899999995
No 7
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-46 Score=376.98 Aligned_cols=216 Identities=38% Similarity=0.675 Sum_probs=198.5
Q ss_pred CHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEeeE
Q 039539 26 SPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELY 105 (484)
Q Consensus 26 sP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~ 105 (484)
+|..|+..|.+..+.|..++||||+|||..|||.|+. +|.++|.|++.+.++|..|+..+.+.
T Consensus 31 ~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~-----------------~i~~~F~G~~~~~i~C~~C~~~s~~~ 93 (279)
T cd02667 31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------FIDSIFGGELTSTIMCESCGTVSLVY 93 (279)
T ss_pred CHHHHHHHHHHhhHhhcCCchhhHHHHHHHHHHHHHH-----------------hhhhhcceEEEEEEEcCCCCCEeCcc
Confidence 9999999999999999999999999999999999983 47889999999999999999999999
Q ss_pred eeeeeeeeeccC---CcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC---ccc
Q 039539 106 ERMMDLTVEIDG---DIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN---FGK 179 (484)
Q Consensus 106 E~f~~LsL~I~~---~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~---~~K 179 (484)
|+|++|+|+++. ...+|+++|+.|+.+|.|+|+|+|.|++|++ |.|+..|.++|+||+|||+||.++. ..|
T Consensus 94 E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~K 170 (279)
T cd02667 94 EPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170 (279)
T ss_pred ccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCcee
Confidence 999999999863 2458999999999999999999999999977 8999999999999999999999874 489
Q ss_pred cccEEEcCCcccCCcCcCC-----CCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC---------------------
Q 039539 180 LNKSVWFPEVLNMAPYMSR-----TGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS--------------------- 233 (484)
Q Consensus 180 i~~~V~fPe~LdL~~y~~~-----~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~--------------------- 233 (484)
+++.|.||+.|||.+|+.. .......|+|+|||+|.|. .++|||+||+|..
T Consensus 171 i~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~---~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 247 (279)
T cd02667 171 VSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGT---MRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGP 247 (279)
T ss_pred cCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCC---CCCCEeEEEEEcCccccccccccccccccccCCC
Confidence 9999999999999999875 2335679999999999993 4899999999973
Q ss_pred -CCcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 234 -HEEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 234 -~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
+++||+|||+.|++++.++|++.+||||||+
T Consensus 248 ~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 248 GSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 5799999999999999999999999999995
No 8
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-46 Score=376.87 Aligned_cols=243 Identities=24% Similarity=0.309 Sum_probs=216.1
Q ss_pred cchHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCC------CCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 039539 4 LHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLG------HGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEE 77 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~------~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~ 77 (484)
-.++.++|++|+.+|+.+..+++|..|+..|++..+.|. .++|||||||+..|||.|++++... ...
T Consensus 42 ~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~-------~~~ 114 (305)
T cd02657 42 SDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA-------GSK 114 (305)
T ss_pred hhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc-------CCC
Confidence 467899999999999998889999999999999988884 4599999999999999999976431 123
Q ss_pred ccccccceeEEEEEEEEECCCC-CeEeeEeeeeeeeeeccCC--cCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEE
Q 039539 78 TTLIGLTFGGYLRSKIKCLKCL-GKSELYERMMDLTVEIDGD--IGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKK 154 (484)
Q Consensus 78 ~siI~~lF~G~l~s~i~C~~C~-~~S~~~E~f~~LsL~I~~~--~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k 154 (484)
.++|.++|+|++.+.++|..|+ .++.+.|+|++|+|+|++. ..+|+++|+.++.++.. ..|+.|+....+.|
T Consensus 115 ~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k 189 (305)
T cd02657 115 GSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTK 189 (305)
T ss_pred CcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEE
Confidence 4679999999999999999999 7999999999999999975 46899999999987754 46999999889999
Q ss_pred EEEEeecCCeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEE
Q 039539 155 KLTVLEEPNILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYV 230 (484)
Q Consensus 155 ~~~i~~lP~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayv 230 (484)
+..|.++|+||+|||+||.++. ..|+++.|.||+.|||.+|+. .+.+|+|+|||+|.| .++.+|||+||+
T Consensus 190 ~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~----~~~~Y~L~~vI~H~G--~~~~~GHY~~~~ 263 (305)
T cd02657 190 TSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT----PSGYYELVAVITHQG--RSADSGHYVAWV 263 (305)
T ss_pred EEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC----CCCcEEEEEEEEecC--CCCCCcEEEEEE
Confidence 9999999999999999998753 369999999999999999986 456899999999999 357899999999
Q ss_pred EcCC-CcEEEEcCCcceeeCcccccC-------CCcEEEEEE
Q 039539 231 KNSH-EEWFRIDDSTVIPVKLERVLS-------EEAYMLLYA 264 (484)
Q Consensus 231 k~~~-~~W~~fnDs~V~~vs~~~v~s-------~~AYmLfY~ 264 (484)
|... ++||+|||+.|++++.++|.. ..||||||+
T Consensus 264 ~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 264 RRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9865 899999999999999999974 699999996
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8e-46 Score=379.88 Aligned_cols=216 Identities=31% Similarity=0.582 Sum_probs=196.8
Q ss_pred CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeE
Q 039539 23 YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKS 102 (484)
Q Consensus 23 ~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S 102 (484)
..++|..|+..+++.++.|..+.||||||||..|||.|+. +|.++|+|++.+.++|..|+..+
T Consensus 82 ~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~-----------------~i~~~F~g~~~~~~~C~~C~~~s 144 (332)
T cd02671 82 ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE-----------------LVEKDFQGQLVLRTRCLECETFT 144 (332)
T ss_pred cccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH-----------------HHHhhhceEEEEEEEeCCCCCee
Confidence 3567999999999999999999999999999999999984 37789999999999999999999
Q ss_pred eeEeeeeeeeeeccCCc------------------CcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCe
Q 039539 103 ELYERMMDLTVEIDGDI------------------GTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNI 164 (484)
Q Consensus 103 ~~~E~f~~LsL~I~~~~------------------~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~V 164 (484)
.+.|+|++|+|+|++.. .+|+++|+.|+++|.|+|+|+|.|++|+.++.|.|+..|.++|+|
T Consensus 145 ~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~v 224 (332)
T cd02671 145 ERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEV 224 (332)
T ss_pred ceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCE
Confidence 99999999999998642 589999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeccC--------CccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCc
Q 039539 165 LTIVLKRFESG--------NFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEE 236 (484)
Q Consensus 165 LiI~LkRF~~~--------~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~ 236 (484)
|+|||+||.++ ...|+++.|.||..|+|.++... .....|+|+|||+|.| +++++|||+||||
T Consensus 225 L~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~--~~~~~Y~L~~VI~H~G--~~~~~GHY~a~vr----- 295 (332)
T cd02671 225 ITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK--PKNDVYRLFAVVMHSG--ATISSGHYTAYVR----- 295 (332)
T ss_pred EEEEeeeeccccccccccCCceecCccccCccccccccccCC--CCCCeEEEEEEEEEcC--CCCCCCeEEEEEE-----
Confidence 99999999954 35799999999999999877543 3457999999999999 4578999999999
Q ss_pred EEEEcCCcceeeCccccc---------CCCcEEEEEE
Q 039539 237 WFRIDDSTVIPVKLERVL---------SEEAYMLLYA 264 (484)
Q Consensus 237 W~~fnDs~V~~vs~~~v~---------s~~AYmLfY~ 264 (484)
||+|||+.|++++++++. ..+||||||+
T Consensus 296 W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 296 WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999999999999887764 3699999995
No 10
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-44 Score=369.82 Aligned_cols=251 Identities=31% Similarity=0.498 Sum_probs=216.1
Q ss_pred chHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhh-cCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 039539 5 HSTFDVVSCLILNAKDGSY-PVSPIGILSKIQKI-GSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIG 82 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~~-~isP~~~~~~L~~~-~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~ 82 (484)
.++.++|+.||.+|+.+.. .+.|..+. .+... +..|..++||||+||+..||+.|+.++... ...++|.
T Consensus 44 ~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~--------~~~~~i~ 114 (334)
T cd02659 44 KSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT--------GQEGLIK 114 (334)
T ss_pred ccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccC--------cccchhh
Confidence 4688999999999987754 45555544 22222 356889999999999999999999876431 1235799
Q ss_pred cceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecC
Q 039539 83 LTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEP 162 (484)
Q Consensus 83 ~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP 162 (484)
++|+|++...++|..|+..+.+.++|+.|+|++++ ..+|+++|+.|+.+|.++|.|+|.|++|+.++.+.++..|.++|
T Consensus 115 ~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP 193 (334)
T cd02659 115 NLFGGKLVNYIICKECPHESEREEYFLDLQVAVKG-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLP 193 (334)
T ss_pred hhCceEEEeEEEecCCCceecccccceEEEEEcCC-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCC
Confidence 99999999999999999999999999999999996 47999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeeccC----CccccccEEEcCCcccCCcCcCCC-----------CCCCCeEEEEEEEEEeecCCCCCCceEE
Q 039539 163 NILTIVLKRFESG----NFGKLNKSVWFPEVLNMAPYMSRT-----------GDGSPMYSLYAVVVHLDVTNATFSGHYV 227 (484)
Q Consensus 163 ~VLiI~LkRF~~~----~~~Ki~~~V~fPe~LdL~~y~~~~-----------~~~~~~Y~L~aVVvH~G~~~~~~sGHYv 227 (484)
+||+|||+||.++ ...|+++.|.||..|||.+|+... ......|+|+|||+|.| +.++|||+
T Consensus 194 ~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G---~~~~GHY~ 270 (334)
T cd02659 194 PVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG---DAHGGHYY 270 (334)
T ss_pred CEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecC---CCCCCCeE
Confidence 9999999999865 237999999999999999998653 23456899999999999 36789999
Q ss_pred EEEEcC-CCcEEEEcCCcceeeCccccc----------------------CCCcEEEEEEecCC
Q 039539 228 CYVKNS-HEEWFRIDDSTVIPVKLERVL----------------------SEEAYMLLYARHSP 268 (484)
Q Consensus 228 ayvk~~-~~~W~~fnDs~V~~vs~~~v~----------------------s~~AYmLfY~R~~~ 268 (484)
||+|.. +++|++|||+.|++++.++|+ +..||||||+|+++
T Consensus 271 ~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 271 SYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred EEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeCC
Confidence 999975 689999999999999998885 34799999999874
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-44 Score=365.64 Aligned_cols=235 Identities=25% Similarity=0.344 Sum_probs=208.6
Q ss_pred cchHHHHHHHHHHHhhCC---------------CCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhc
Q 039539 4 LHSTFDVVSCLILNAKDG---------------SYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEF 68 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~---------------~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~ 68 (484)
..++.++|++|+..|+.+ ..+++|..|+..++...+.|..+.|||||||+++|||.|++++.+..
T Consensus 43 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~ 122 (311)
T cd02658 43 ANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNL 122 (311)
T ss_pred cccHHHHHHHHHHHhcCCCcCCCccccccccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccc
Confidence 357899999999998764 23699999999999999999999999999999999999998764211
Q ss_pred CCCCCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc-------------CcHHHHHHhhhcceee
Q 039539 69 GAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI-------------GTLEEALAQFTASEIL 135 (484)
Q Consensus 69 ~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~-------------~sLee~L~~~~~~E~L 135 (484)
...+.++|+|.+.+.++|..|+..+.+.|+|.+|+|+|+... .+|+++|+.|+.+|.+
T Consensus 123 ---------~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i 193 (311)
T cd02658 123 ---------GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETI 193 (311)
T ss_pred ---------cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccc
Confidence 234788999999999999999999999999999999998532 3899999999999999
Q ss_pred cCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC---ccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEE
Q 039539 136 VGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN---FGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVV 212 (484)
Q Consensus 136 dg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~---~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVV 212 (484)
+ +.|++|+.++.|.|+..|.++|+||+|||+||.++. ..|++..|.||..| ....|+|+|||
T Consensus 194 ~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI 258 (311)
T cd02658 194 E----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFI 258 (311)
T ss_pred c----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC-----------CCCcEEEEEEE
Confidence 7 579999999999999999999999999999998842 37999999999877 24579999999
Q ss_pred EEeecCCCCCCceEEEEEEcC---CCcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 213 VHLDVTNATFSGHYVCYVKNS---HEEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 213 vH~G~~~~~~sGHYvayvk~~---~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
+|.| .++++|||++|+|.. .++||+|||+.|++++..+|++++||||||+
T Consensus 259 ~H~G--~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 259 SHKG--TSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EccC--CCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9999 357899999999975 2899999999999999999999999999995
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-42 Score=368.08 Aligned_cols=249 Identities=21% Similarity=0.276 Sum_probs=206.8
Q ss_pred chHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhhc-CCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 039539 5 HSTFDVVSCLILNAKDGS---YPVSPIGILSKIQKIG-SHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTL 80 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~---~~isP~~~~~~L~~~~-~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~si 80 (484)
.+|.++|+.|+.++|... .+++|..|+..+.... ..|..++||||||||.+|||.|++++.... ....++
T Consensus 162 ~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~------~~~~~i 235 (440)
T cd02669 162 SELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK------KPNSSI 235 (440)
T ss_pred cHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC------CCCCCc
Confidence 578999999999999763 5899999999998865 468899999999999999999999874321 234588
Q ss_pred cccceeEEEEEEEEECCCC---------------CeEeeEeeeeeeeeeccCCcC----cHHHHHHhhhcceeecCCCee
Q 039539 81 IGLTFGGYLRSKIKCLKCL---------------GKSELYERMMDLTVEIDGDIG----TLEEALAQFTASEILVGENKY 141 (484)
Q Consensus 81 I~~lF~G~l~s~i~C~~C~---------------~~S~~~E~f~~LsL~I~~~~~----sLee~L~~~~~~E~Ldg~nky 141 (484)
|.++|+|++.+.++|..|. ..+.+.++|++|+|+|+.... +...+|..+...|.|+ +|
T Consensus 236 i~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky 312 (440)
T cd02669 236 IHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KY 312 (440)
T ss_pred ceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hc
Confidence 9999999999999987654 246778999999999986411 1122233333334443 38
Q ss_pred ecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcCCc-ccCCcCcCCC---CCCCCeEEEEEEEEEe
Q 039539 142 YCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFPEV-LNMAPYMSRT---GDGSPMYSLYAVVVHL 215 (484)
Q Consensus 142 ~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fPe~-LdL~~y~~~~---~~~~~~Y~L~aVVvH~ 215 (484)
.|+.|.....+.|+..|.+||+||+||||||.++. ..|+++.|.||.. |||.+|+... ......|+|+|||+|.
T Consensus 313 ~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~ 392 (440)
T cd02669 313 DGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHE 392 (440)
T ss_pred CCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEe
Confidence 89999998999999999999999999999999764 3799999999986 8999998632 3456799999999999
Q ss_pred ecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 216 DVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 216 G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
|+ .+++|||+||+|+. +|+||+|||+.|+++++++|+..+||||||+
T Consensus 393 G~--~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 393 GT--PQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred cc--CCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 94 33799999999974 7899999999999999999999999999995
No 13
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.6e-42 Score=336.46 Aligned_cols=225 Identities=24% Similarity=0.353 Sum_probs=181.3
Q ss_pred CHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCC--CcccccccccceeEEEEEEEEECCCCCeEe
Q 039539 26 SPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGK--IAEETTLIGLTFGGYLRSKIKCLKCLGKSE 103 (484)
Q Consensus 26 sP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~--~~~~~siI~~lF~G~l~s~i~C~~C~~~S~ 103 (484)
+....+..|+++.+.|.+++||||||||++|||.|++++......... .........++|+|++.+.++|..|++++.
T Consensus 13 ~~~~~~~~i~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~ 92 (245)
T cd02673 13 STMQALSSIGKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEEN 92 (245)
T ss_pred hHHHHHHHHhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeee
Confidence 455678889999999999999999999999999999877543222110 011111235789999999999999999999
Q ss_pred eEeeeeeeeeeccCC-cCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCcccccc
Q 039539 104 LYERMMDLTVEIDGD-IGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNK 182 (484)
Q Consensus 104 ~~E~f~~LsL~I~~~-~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~~Ki~~ 182 (484)
+.|+|++|+|+|+.. ...|++++..|...+.++ |.|++|+.+ .+.|+..|.++|+||+|||+||.+.. ++..
T Consensus 93 ~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~ 165 (245)
T cd02673 93 VSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSD 165 (245)
T ss_pred eccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccc
Confidence 999999999999864 456788888888877764 899999875 78888999999999999999997543 2222
Q ss_pred EEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC--CCcEEEEcCCcceeeCccccc---CCC
Q 039539 183 SVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS--HEEWFRIDDSTVIPVKLERVL---SEE 257 (484)
Q Consensus 183 ~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~--~~~W~~fnDs~V~~vs~~~v~---s~~ 257 (484)
.+.. ..++|.+|+. ....|+|+|||+|.| +++++|||+||+|.. +++||+|||+.|+++++++|+ +++
T Consensus 166 ~~~~-~~~~~~~~~~----~~~~Y~L~~VV~H~G--~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~ 238 (245)
T cd02673 166 YLKK-NEEIMKKYCG----TDAKYSLVAVICHLG--ESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSS 238 (245)
T ss_pred cccc-cccccccccC----CCceEEEEEEEEECC--CCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCc
Confidence 2222 2456777754 456899999999999 457899999999975 589999999999999999998 579
Q ss_pred cEEEEEE
Q 039539 258 AYMLLYA 264 (484)
Q Consensus 258 AYmLfY~ 264 (484)
||||||+
T Consensus 239 aYiLFY~ 245 (245)
T cd02673 239 GYLIFYD 245 (245)
T ss_pred eEEEEEC
Confidence 9999995
No 14
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-44 Score=376.62 Aligned_cols=267 Identities=26% Similarity=0.405 Sum_probs=234.5
Q ss_pred CCcchHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q 039539 2 PGLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLI 81 (484)
Q Consensus 2 ~gl~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI 81 (484)
+|-.++..+|+++|.+|+.+..|++..+|...+. +..+....|||+|||.+.|.|.|+..+ +.+... ..+
T Consensus 231 ~grdSValaLQr~Fynlq~~~~PvdTteltrsfg--Wds~dsf~QHDiqEfnrVl~DnLEksm-rgt~VE-------nal 300 (1089)
T COG5077 231 RGRDSVALALQRLFYNLQTGEEPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQDNLEKSM-RGTVVE-------NAL 300 (1089)
T ss_pred CccchHHHHHHHHHHHHhccCCCcchHHhhhhcC--cccchHHHHHhHHHHHHHHHHHHHHhh-cCChhh-------hHH
Confidence 3677899999999999999999999999998775 667888899999999999999999833 322222 447
Q ss_pred ccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeec
Q 039539 82 GLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEE 161 (484)
Q Consensus 82 ~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~l 161 (484)
..+|-|+|.++++|.+..++|.+.|.||+|+|++++ ..+|+++++.|.+.|+|+|+|+|.|+..| .++|.|...|.++
T Consensus 301 n~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~-~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSl 378 (1089)
T COG5077 301 NGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESL 378 (1089)
T ss_pred hHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc-hhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccC
Confidence 889999999999999999999999999999999997 58999999999999999999999999985 5999999999999
Q ss_pred CCeEEEEEeeeccC----CccccccEEEcCCcccCCcCcCCC----CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC
Q 039539 162 PNILTIVLKRFESG----NFGKLNKSVWFPEVLNMAPYMSRT----GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS 233 (484)
Q Consensus 162 P~VLiI~LkRF~~~----~~~Ki~~~V~fPe~LdL~~y~~~~----~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~ 233 (484)
||||.||||||+++ .+.|||++.+||+++||.+|++.. +.....|.|+||+||.| +.+.|||+|++|..
T Consensus 379 PpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsG---Dl~~GHyYallKpe 455 (1089)
T COG5077 379 PPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSG---DLHEGHYYALLKPE 455 (1089)
T ss_pred chHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEecc---ccCCceEEEEeccc
Confidence 99999999999864 568999999999999999999754 33447999999999998 78899999999965
Q ss_pred -CCcEEEEcCCcceeeCcccccC----------------------CCcEEEEEEecCCCCCccccCCCccccc
Q 039539 234 -HEEWFRIDDSTVIPVKLERVLS----------------------EEAYMLLYARHSPRPPALIRNNVSHGVK 283 (484)
Q Consensus 234 -~~~W~~fnDs~V~~vs~~~v~s----------------------~~AYmLfY~R~~~~~~~~~~~~~~~~~~ 283 (484)
+|+||+|||+.|+++...+|+. .+||||+|-|++.....+.++....+++
T Consensus 456 ~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddLlnPV~a~diP~ 528 (1089)
T COG5077 456 KDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDIPP 528 (1089)
T ss_pred cCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhhhCchhhhhCCH
Confidence 8999999999999999998863 2899999999998766665555444443
No 15
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-41 Score=323.23 Aligned_cols=200 Identities=40% Similarity=0.667 Sum_probs=182.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc-----
Q 039539 45 REEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI----- 119 (484)
Q Consensus 45 ~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~----- 119 (484)
.||||+||+++||+.|+ ++|.++|+|++...++|..|+..+.+.|+|+.|+|+|+...
T Consensus 21 ~QqDa~Ef~~~ll~~l~-----------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~ 83 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH-----------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPK 83 (230)
T ss_pred hhhhHHHHHHHHHHHHh-----------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCC
Confidence 89999999999999998 23788999999999999999999999999999999998643
Q ss_pred CcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcC-CcccCCcCc
Q 039539 120 GTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFP-EVLNMAPYM 196 (484)
Q Consensus 120 ~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fP-e~LdL~~y~ 196 (484)
.+|+++|+.|+.+|.++|.+++.|++|+.++.+.++..|.++|++|+|+|+||.++. ..|+++.|.|| +.|+|.+|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 499999999999999999999999999999999999999999999999999999864 58999999999 569999885
Q ss_pred C-CCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCC-CcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 197 S-RTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSH-EEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 197 ~-~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~-~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
. .......+|+|+|||+|.|. ..+|||+||+|... ++|++|||+.|++++.+++....||||||+
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGS---LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCC---CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 3 23445679999999999993 37999999999864 899999999999999999989999999995
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-40 Score=321.50 Aligned_cols=178 Identities=38% Similarity=0.658 Sum_probs=162.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEe-eEeeeeeeeeeccCC----c
Q 039539 45 REEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSE-LYERMMDLTVEIDGD----I 119 (484)
Q Consensus 45 ~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~-~~E~f~~LsL~I~~~----~ 119 (484)
+||||||||..||+.|+. .+.++|.|++.+.++|..|+..+. +.|+|++|+|+|+.. .
T Consensus 33 ~QqDa~EFl~~ll~~l~~-----------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~ 95 (240)
T cd02662 33 EQQDAHELFQVLLETLEQ-----------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSG 95 (240)
T ss_pred hhcCHHHHHHHHHHHHHH-----------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCC
Confidence 999999999999999983 267899999999999999999976 599999999999975 4
Q ss_pred CcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC---ccccccEEEcCCcccCCcCc
Q 039539 120 GTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN---FGKLNKSVWFPEVLNMAPYM 196 (484)
Q Consensus 120 ~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~---~~Ki~~~V~fPe~LdL~~y~ 196 (484)
.+|+++|+.|+.+|.++| |.|++| +..|.++|+||+|||+||.++. ..|+++.|.||+.|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l------ 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------ 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc------
Confidence 699999999999999998 999999 5689999999999999998764 47999999999988
Q ss_pred CCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC---------------------CCcEEEEcCCcceeeCcccc-c
Q 039539 197 SRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS---------------------HEEWFRIDDSTVIPVKLERV-L 254 (484)
Q Consensus 197 ~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~---------------------~~~W~~fnDs~V~~vs~~~v-~ 254 (484)
....|+|+|||+|.| +.++|||+||+|.. .++||+|||+.|+++++++| .
T Consensus 159 -----~~~~Y~L~avi~H~G---~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~ 230 (240)
T cd02662 159 -----PKVLYRLRAVVVHYG---SHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLE 230 (240)
T ss_pred -----CCceEEEEEEEEEec---cCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhh
Confidence 356899999999999 34799999999975 38999999999999999999 8
Q ss_pred CCCcEEEEEE
Q 039539 255 SEEAYMLLYA 264 (484)
Q Consensus 255 s~~AYmLfY~ 264 (484)
+.+||||||+
T Consensus 231 ~~~aY~LfYe 240 (240)
T cd02662 231 QKSAYMLFYE 240 (240)
T ss_pred CCCEEEEEeC
Confidence 8999999995
No 17
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-40 Score=321.17 Aligned_cols=197 Identities=23% Similarity=0.279 Sum_probs=166.2
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHH
Q 039539 45 REEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEE 124 (484)
Q Consensus 45 ~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee 124 (484)
.|||||||+..|||.|++++..............++|.++|+|++.+.+.| |+..+.+.|+|++|+|+|.+. .+|++
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~-~~L~e 97 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGY-GNLHE 97 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCC-CCHHH
Confidence 899999999999999999875432211122245578999999999987777 788899999999999999974 89999
Q ss_pred HHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcCCcccCCcCcCCCCCC
Q 039539 125 ALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFPEVLNMAPYMSRTGDG 202 (484)
Q Consensus 125 ~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fPe~LdL~~y~~~~~~~ 202 (484)
||+.|+.+|.+++++. .. ...+.++..|.++|+||+|||+||.++. ..|+++.|+||..| .
T Consensus 98 ~L~~~~~ee~l~~~~~---~~---~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l-----------~ 160 (228)
T cd02665 98 CLEAAMFEGEVELLPS---DH---SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII-----------Q 160 (228)
T ss_pred HHHHhhhhcccccccc---cc---hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc-----------C
Confidence 9999999999988543 22 2456677789999999999999999854 58999999999887 2
Q ss_pred CCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccC--------CCcEEEEEE
Q 039539 203 SPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLS--------EEAYMLLYA 264 (484)
Q Consensus 203 ~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s--------~~AYmLfY~ 264 (484)
...|+|+|||+|.| .+++|||++|+|+. +++||+|||+.|++++.++|.. .+||||||+
T Consensus 161 ~~~Y~L~aVi~H~G---~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 161 QVPYELHAVLVHEG---QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred CceeEEEEEEEecC---CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 35899999999999 37899999999865 7899999999999999999864 489999995
No 18
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-42 Score=363.86 Aligned_cols=256 Identities=28% Similarity=0.474 Sum_probs=228.1
Q ss_pred hHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccc
Q 039539 6 STFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLT 84 (484)
Q Consensus 6 sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~l 84 (484)
.++++++.+|-.+-.++ .++.|..|-..++-.+..++..+||||-||+..|||.|.+.+++... ..++...
T Consensus 141 ~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~--------p~lf~n~ 212 (944)
T KOG1866|consen 141 KVLRHLQVIFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGH--------PQLFSNT 212 (944)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCC--------cHHHHHH
Confidence 38899999999987775 58999999999999998999999999999999999999987755432 2568889
Q ss_pred eeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCe
Q 039539 85 FGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNI 164 (484)
Q Consensus 85 F~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~V 164 (484)
|+|....+-.|..|-+.-+..|+|+.|+|.|.+ .+|+++|++|++.|.|+|.|+|+|++|++++...|++.|.+||+|
T Consensus 213 f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~~--~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsv 290 (944)
T KOG1866|consen 213 FGGSYSDQKICQGCPHRYECEESFTTLNLDIRH--QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSV 290 (944)
T ss_pred hcCccchhhhhccCCcccCccccceeeeeeccc--chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChh
Confidence 999999999999999999999999999999995 699999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeccC----CccccccEEEcCCcccCCcCcCCC-----------------CCCCCeEEEEEEEEEeecCCCCCC
Q 039539 165 LTIVLKRFESG----NFGKLNKSVWFPEVLNMAPYMSRT-----------------GDGSPMYSLYAVVVHLDVTNATFS 223 (484)
Q Consensus 165 LiI~LkRF~~~----~~~Ki~~~V~fPe~LdL~~y~~~~-----------------~~~~~~Y~L~aVVvH~G~~~~~~s 223 (484)
|.||||||.++ ...|-|+.++||-+|||.||+..+ ...+.+|+|+|||+|+| -+++
T Consensus 291 l~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG---qAsa 367 (944)
T KOG1866|consen 291 LAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG---QASA 367 (944)
T ss_pred heehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc---cccC
Confidence 99999999986 237999999999999999997532 23456999999999998 5889
Q ss_pred ceEEEEEEcC----CCcEEEEcCCcceeeCcccccC--------------------CCcEEEEEEecCCCCCccc
Q 039539 224 GHYVCYVKNS----HEEWFRIDDSTVIPVKLERVLS--------------------EEAYMLLYARHSPRPPALI 274 (484)
Q Consensus 224 GHYvayvk~~----~~~W~~fnDs~V~~vs~~~v~s--------------------~~AYmLfY~R~~~~~~~~~ 274 (484)
|||++||+.. .++||+|||..|++++..++.. -+||||||+|.+..+....
T Consensus 368 GHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~ 442 (944)
T KOG1866|consen 368 GHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDE 442 (944)
T ss_pred cchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCcccc
Confidence 9999999874 5799999999999998876532 1999999999998766543
No 19
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=345.05 Aligned_cols=259 Identities=28% Similarity=0.468 Sum_probs=228.1
Q ss_pred hHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCC------------
Q 039539 6 STFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKG------------ 72 (484)
Q Consensus 6 sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~------------ 72 (484)
.+.-+|+.|++++..++ ..+.|..|+..|++++..|.++.|||.|||+.+|||.||++++.......
T Consensus 314 ~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~ 393 (823)
T COG5560 314 SVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDV 393 (823)
T ss_pred hHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchH
Confidence 46689999999999876 48999999999999999999999999999999999999999873221110
Q ss_pred ------------CCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeecc------------------------
Q 039539 73 ------------KIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEID------------------------ 116 (484)
Q Consensus 73 ------------~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~------------------------ 116 (484)
....+.++|.++|.|-++++..|+.|+.+|.+++||++|+||+|
T Consensus 394 ~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~ie 473 (823)
T COG5560 394 VVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIE 473 (823)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEE
Confidence 11225789999999999999999999999999999999999870
Q ss_pred --------------------------------------------------------------------------------
Q 039539 117 -------------------------------------------------------------------------------- 116 (484)
Q Consensus 117 -------------------------------------------------------------------------------- 116 (484)
T Consensus 474 l~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gY 553 (823)
T COG5560 474 LDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGY 553 (823)
T ss_pred EeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 039539 117 -------------------------------------------------------------------------------- 116 (484)
Q Consensus 117 -------------------------------------------------------------------------------- 116 (484)
T Consensus 554 ks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE 633 (823)
T COG5560 554 KSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEE 633 (823)
T ss_pred cchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhh
Confidence
Q ss_pred -----C---------------------------------CcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEE
Q 039539 117 -----G---------------------------------DIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTV 158 (484)
Q Consensus 117 -----~---------------------------------~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i 158 (484)
+ ...+|++||..|.++|.|.-...++|+.|+.+..|+|++.|
T Consensus 634 ~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmel 713 (823)
T COG5560 634 GQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMEL 713 (823)
T ss_pred hccCCCcceEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhh
Confidence 0 02489999999999999999999999999999999999999
Q ss_pred eecCCeEEEEEeeeccCCc--cccccEEEcC-CcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-C
Q 039539 159 LEEPNILTIVLKRFESGNF--GKLNKSVWFP-EVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-H 234 (484)
Q Consensus 159 ~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fP-e~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~ 234 (484)
+++|.||+||||||+..+. .||.+-|+|| ..|||+.+...-.+....|.||||=+|+|. ..+|||+||+|+. +
T Consensus 714 wrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygg---lsgGHYtAyarn~~n 790 (823)
T COG5560 714 WRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGG---LSGGHYTAYARNFAN 790 (823)
T ss_pred hcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccc---cCCcceeeeeecccC
Confidence 9999999999999997643 8999999999 679998876544444579999999999994 5589999999986 6
Q ss_pred CcEEEEcCCcceeeCcccccCCCcEEEEEEecC
Q 039539 235 EEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS 267 (484)
Q Consensus 235 ~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~ 267 (484)
++||+|||+.|+++.+++.....||+|||+|++
T Consensus 791 ~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 791 NGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred CceEEecCccccccCccccccceeEEEEEEecC
Confidence 799999999999999999999999999999974
No 20
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=313.11 Aligned_cols=248 Identities=24% Similarity=0.334 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHh-hCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC--CCC---------
Q 039539 7 TFDVVSCLILNA-KDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK--GKI--------- 74 (484)
Q Consensus 7 L~~~l~~L~~~~-~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~--~~~--------- 74 (484)
++..|..|...+ ..+...|+|..|++.++.+++.|....|||+|||+.++||.||++++...... .+.
T Consensus 122 ~~k~F~~l~~~~~~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Re 201 (415)
T COG5533 122 AFKQFIALYETPGCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVRE 201 (415)
T ss_pred HHHHHHHHHhccccCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHh
Confidence 445566666655 45566899999999999999999999999999999999999999885433221 011
Q ss_pred ----------------cccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC-cCcHHHHHHhhhcceeecC
Q 039539 75 ----------------AEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD-IGTLEEALAQFTASEILVG 137 (484)
Q Consensus 75 ----------------~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~-~~sLee~L~~~~~~E~Ldg 137 (484)
..+.++|.+.|.|+..+.++|..|++.|.+..+|..|.++++.- ...|+|||++|.++|.|+|
T Consensus 202 el~l~~~S~~EWn~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g 281 (415)
T COG5533 202 ELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEG 281 (415)
T ss_pred hcCcchhhhhhhHHhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcC
Confidence 11357889999999999999999999999999999999999842 2369999999999999999
Q ss_pred CCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCccccccEEEcCCcccCCcCcC---------------CCCCC
Q 039539 138 ENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMS---------------RTGDG 202 (484)
Q Consensus 138 ~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~---------------~~~~~ 202 (484)
+.+|.|++|+.++.++|++.|..+|++||||++||. -.|..|..||+.++.. +.+-.
T Consensus 282 ~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~--------i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~ 353 (415)
T COG5533 282 KDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFH--------ISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYI 353 (415)
T ss_pred cccccCchhcccccchheEEEEecCceEEEEeeeee--------EEeecccccCCCcchhccCCceecccccccCCCCCC
Confidence 999999999999999999999999999999999997 2333444444444322 22334
Q ss_pred CCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCccccc-CCCcEEEEEEec
Q 039539 203 SPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVL-SEEAYMLLYARH 266 (484)
Q Consensus 203 ~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~-s~~AYmLfY~R~ 266 (484)
+.+|.|+|||||.| ...+|||+++|+. ++.|+.|||+.|++++...-. ..++|||||+|.
T Consensus 354 P~~Y~L~gv~Ch~G---~L~gGHY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 354 PRKYSLLGVVCHNG---TLNGGHYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ccceeEEEEEeecc---eecCceeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 56999999999999 4669999999996 799999999999999865433 458999999985
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=338.24 Aligned_cols=262 Identities=34% Similarity=0.538 Sum_probs=224.8
Q ss_pred hHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCC-------------
Q 039539 6 STFDVVSCLILNAKDGS--YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGA------------- 70 (484)
Q Consensus 6 sL~~~l~~L~~~~~~~~--~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~------------- 70 (484)
.+..++.+++.+++.+. ..+.|..|+..+++..+.|.+..|||+|||+.+++|.||+++......
T Consensus 349 ~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~ 428 (653)
T KOG1868|consen 349 ELESACAKLLQKLWHGHGQFSVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLS 428 (653)
T ss_pred hHHHHHHHhhhhhccCCCceecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccc
Confidence 45667788888877764 488999999999999999999999999999999999999999764321
Q ss_pred ----CC----------CCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc-----CcHHHHHHhhhc
Q 039539 71 ----KG----------KIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI-----GTLEEALAQFTA 131 (484)
Q Consensus 71 ----~~----------~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~-----~sLee~L~~~~~ 131 (484)
.. ........|..+|.|++.+.++|..|++.+.++++|++++|+|+... .+|++|+..|++
T Consensus 429 ~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~ 508 (653)
T KOG1868|consen 429 ELELSDSKKSLAEWLRYLEEEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTK 508 (653)
T ss_pred cccccccchhHHHHHhhccccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccc
Confidence 00 00112334899999999999999999999999999999999998532 349999999999
Q ss_pred ceeecCCCeeecCCCCceeeEE--EEEEEeecCCeEEEEEeeeccC--CccccccEEEcCC-cccCCcCcCCCCCCCCeE
Q 039539 132 SEILVGENKYYCSRCKSYEKAK--KKLTVLEEPNILTIVLKRFESG--NFGKLNKSVWFPE-VLNMAPYMSRTGDGSPMY 206 (484)
Q Consensus 132 ~E~Ldg~nky~C~~C~~~~~a~--k~~~i~~lP~VLiI~LkRF~~~--~~~Ki~~~V~fPe-~LdL~~y~~~~~~~~~~Y 206 (484)
.|.++|+++|.|++|+.+.... |+..|.+||+||+|||+||..+ ...|....|.||. .+++.++.....+....|
T Consensus 509 ~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y 588 (653)
T KOG1868|consen 509 EEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSY 588 (653)
T ss_pred hhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccce
Confidence 9999999999999999999886 9999999999999999999987 4588888899995 566666766666777789
Q ss_pred EEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCCC
Q 039539 207 SLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRP 270 (484)
Q Consensus 207 ~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~~ 270 (484)
+|+|||+|.| ...+|||+|||+.. .+.|+.|||+.|+++....+.+..||||||.|..+..
T Consensus 589 ~L~aVv~H~G---tl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 589 RLYAVVNHSG---TLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred eeEEEEeccC---cccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 9999999999 46699999999765 6889999999999999999989999999999987643
No 22
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-39 Score=336.49 Aligned_cols=239 Identities=30% Similarity=0.516 Sum_probs=205.6
Q ss_pred CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeE
Q 039539 23 YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKS 102 (484)
Q Consensus 23 ~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S 102 (484)
..+..+.|.+.++ +..-..++|||+||+++.++|+|+-..+. ++...+|..++.|+|...+.|.+|+.++
T Consensus 122 ~~~et~dlt~sfg--w~s~ea~~qhdiqelcr~mfdalehk~k~--------t~~~~li~~ly~g~m~d~v~cl~c~~e~ 191 (1203)
T KOG4598|consen 122 DSLETKDLTQSFG--WTSNEAYDQHDVQELCRLMFDALEHKWKG--------TEHEKLIQDLYRGTMEDFVACLKCGRES 191 (1203)
T ss_pred ccccchhhHhhcC--CCcchhhhhhhHHHHHHHHHHHHHhhhcC--------chHHHHHHHHhcchHHHHHHHHHcCccc
Confidence 3677777777664 22233568999999999999999875532 2344789999999999999999999999
Q ss_pred eeEeeeeeeeeeccC-----CcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC-
Q 039539 103 ELYERMMDLTVEIDG-----DIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN- 176 (484)
Q Consensus 103 ~~~E~f~~LsL~I~~-----~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~- 176 (484)
.+.+.|++|.|+|+. ...+++++|..|..||.|+|.|+|-|++|+++++|.|.+.|+.+|-+|+||||||.++-
T Consensus 192 ~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~ 271 (1203)
T KOG4598|consen 192 VKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYN 271 (1203)
T ss_pred cccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccch
Confidence 999999999999973 13589999999999999999999999999999999999999999999999999998762
Q ss_pred ---ccccccEEEcCCcccCCcCcCCC------------------------------------------------------
Q 039539 177 ---FGKLNKSVWFPEVLNMAPYMSRT------------------------------------------------------ 199 (484)
Q Consensus 177 ---~~Ki~~~V~fPe~LdL~~y~~~~------------------------------------------------------ 199 (484)
..|+|+++.||..|||..|+...
T Consensus 272 tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~ 351 (1203)
T KOG4598|consen 272 TMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQ 351 (1203)
T ss_pred heeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCC
Confidence 37999999999999999987532
Q ss_pred ------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCccccc------------
Q 039539 200 ------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVL------------ 254 (484)
Q Consensus 200 ------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~------------ 254 (484)
..++..|+|.||.+|.| ++.+|||++|||+. ++.||.|||..|+.++.+++.
T Consensus 352 ~~~~~~~~~~~~~sg~~~yelf~imihsg---~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~ 428 (1203)
T KOG4598|consen 352 PIDHAAVDDIVKTSGDNVYELFSVMVHSG---NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQ 428 (1203)
T ss_pred cCchhhhhhHhhcCCccHHHhhhhheecC---CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccc
Confidence 23456899999999998 68899999999986 789999999999999988874
Q ss_pred -CCCcEEEEEEecCCCCCccc
Q 039539 255 -SEEAYMLLYARHSPRPPALI 274 (484)
Q Consensus 255 -s~~AYmLfY~R~~~~~~~~~ 274 (484)
+.+||||+|+|.+++...+.
T Consensus 429 s~tnaymlmyr~id~krn~~~ 449 (1203)
T KOG4598|consen 429 SNTNAYMLMYRRIDPKRNARF 449 (1203)
T ss_pred cCcchhhhhhhhcCcccccce
Confidence 36999999999998766543
No 23
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-37 Score=325.44 Aligned_cols=262 Identities=35% Similarity=0.567 Sum_probs=231.2
Q ss_pred CcchHHHHHHHHHHHhhCCC-C-CcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCC----CCCCcc
Q 039539 3 GLHSTFDVVSCLILNAKDGS-Y-PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGA----KGKIAE 76 (484)
Q Consensus 3 gl~sL~~~l~~L~~~~~~~~-~-~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~----~~~~~~ 76 (484)
+..|+.|++.++++.++++. . +++|..++..+++..+.+.+++|||||||+..++|.++.+. +..+. ......
T Consensus 203 ~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~-~~~~k~~~~~~~~~~ 281 (492)
T KOG1867|consen 203 GSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREK-DDCGKSLIASQSNKQ 281 (492)
T ss_pred CCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHHhCcccccccccchHHHHHHhcccccccc-cccccccccccCCcc
Confidence 46789999999999999997 4 99999999999999999999999999999999999999876 11111 111114
Q ss_pred cccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc---------CcHHHHHHhhhcceeecCCCeeecCCCC
Q 039539 77 ETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI---------GTLEEALAQFTASEILVGENKYYCSRCK 147 (484)
Q Consensus 77 ~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~---------~sLee~L~~~~~~E~Ldg~nky~C~~C~ 147 (484)
..+++...|.|.+.+.++|..|+..+...++|++|+|+|+... .++.++++.+...|.+....++.|..|+
T Consensus 282 c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~ 361 (492)
T KOG1867|consen 282 CPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCK 361 (492)
T ss_pred cccccceeecceeccceeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcc
Confidence 4689999999999999999999999999999999999998432 4699999999999998888899999999
Q ss_pred ceeeEEEEEEEeecCCeEEEEEeeeccC---CccccccEEEcCCcccCCcCcCCC-----CCCCCeEEEEEEEEEeecCC
Q 039539 148 SYEKAKKKLTVLEEPNILTIVLKRFESG---NFGKLNKSVWFPEVLNMAPYMSRT-----GDGSPMYSLYAVVVHLDVTN 219 (484)
Q Consensus 148 ~~~~a~k~~~i~~lP~VLiI~LkRF~~~---~~~Ki~~~V~fPe~LdL~~y~~~~-----~~~~~~Y~L~aVVvH~G~~~ 219 (484)
.++.+.|+..|.++|.+|.+||+||.+. ...|+.+.|.||..|+|.+|+..+ +..+..|+|.|||+|+|+
T Consensus 362 ~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-- 439 (492)
T KOG1867|consen 362 SKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-- 439 (492)
T ss_pred cccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC--
Confidence 9999999999999999999999999864 224999999999999999998742 234679999999999993
Q ss_pred CCCCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCC
Q 039539 220 ATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPR 269 (484)
Q Consensus 220 ~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~ 269 (484)
.++|||+||.|. .+.|++|||+.|+.+++++|++..||+|||.+....
T Consensus 440 -~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 440 -VGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred -CCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 679999999997 788999999999999999999999999999987643
No 24
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.6e-36 Score=284.48 Aligned_cols=215 Identities=38% Similarity=0.594 Sum_probs=184.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC---cCc
Q 039539 45 REEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD---IGT 121 (484)
Q Consensus 45 ~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~---~~s 121 (484)
.||||+|||..+|+.|+.++..............+++.++|.|.+...+.|..|+..+.....+..+.|+++.. ..+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~ 100 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVS 100 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCc
Confidence 99999999999999999987654332122223446799999999999999999998888877888888888765 479
Q ss_pred HHHHHHhhhcceeecCCCeeecCCCC--ceeeEEEEEEEeecCCeEEEEEeeeccCC---ccccccEEEcCCcccCCcCc
Q 039539 122 LEEALAQFTASEILVGENKYYCSRCK--SYEKAKKKLTVLEEPNILTIVLKRFESGN---FGKLNKSVWFPEVLNMAPYM 196 (484)
Q Consensus 122 Lee~L~~~~~~E~Ldg~nky~C~~C~--~~~~a~k~~~i~~lP~VLiI~LkRF~~~~---~~Ki~~~V~fPe~LdL~~y~ 196 (484)
|+++|+.++..|.+++ +.|..|+ ..+.+.++..|.++|++|+|+|+||..+. ..|++..|.||+.|++..++
T Consensus 101 l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~ 177 (255)
T cd02257 101 LEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYL 177 (255)
T ss_pred HHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCcccc
Confidence 9999999999999988 7788887 68889999999999999999999998754 68999999999999998886
Q ss_pred CC------CCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCC-CcEEEEcCCcceeeCcccc-----cCCCcEEEEEE
Q 039539 197 SR------TGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSH-EEWFRIDDSTVIPVKLERV-----LSEEAYMLLYA 264 (484)
Q Consensus 197 ~~------~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~-~~W~~fnDs~V~~vs~~~v-----~s~~AYmLfY~ 264 (484)
.. .......|+|+|||+|.| ....+|||+||+|... ++||+|||..|++++.+++ ....||||||+
T Consensus 178 ~~~~~~~~~~~~~~~Y~L~~vi~h~G--~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 178 SEGEKDSDSDNGSYKYELVAVVVHSG--TSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred ccccccccccCCCccEEEEEEEEEec--CCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 42 344567999999999999 3458999999999875 9999999999999999998 56899999995
No 25
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=305.74 Aligned_cols=244 Identities=23% Similarity=0.386 Sum_probs=211.5
Q ss_pred cchHHHHHHHHHHHhhCCC-----------CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCC
Q 039539 4 LHSTFDVVSCLILNAKDGS-----------YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKG 72 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~-----------~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~ 72 (484)
..++.|+|.+|...|.+++ ..|+|..|+..+++..+.|.+.+||||+|||.+||+.|++-....
T Consensus 351 ~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~----- 425 (763)
T KOG0944|consen 351 TNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS----- 425 (763)
T ss_pred chhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-----
Confidence 3578899999999998773 258999999999999999999999999999999999998732111
Q ss_pred CCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccC-----CcCcHHHHHHhhhcceeecCCCeeecCCCC
Q 039539 73 KIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDG-----DIGTLEEALAQFTASEILVGENKYYCSRCK 147 (484)
Q Consensus 73 ~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~-----~~~sLee~L~~~~~~E~Ldg~nky~C~~C~ 147 (484)
.+.+..+|...+..++.|..|..++...++.+.|+|+|+. ....+.+||+.|+.| .++. |.|..|+
T Consensus 426 -----~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~ 496 (763)
T KOG0944|consen 426 -----LPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACG 496 (763)
T ss_pred -----CCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhc
Confidence 0347889999999999999999999999999999999985 124899999999999 4444 9999999
Q ss_pred ceeeEEEEEEEeecCCeEEEEEeeeccCCc--cccccEEEcCCcccCCcCcCCC--------------------------
Q 039539 148 SYEKAKKKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFPEVLNMAPYMSRT-------------------------- 199 (484)
Q Consensus 148 ~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fPe~LdL~~y~~~~-------------------------- 199 (484)
.+..|+|+..|.++|++|+||++||.+..+ +|+...|++|+.|||+.|+..+
T Consensus 497 ~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~ 576 (763)
T KOG0944|consen 497 EKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVIS 576 (763)
T ss_pred CccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHH
Confidence 999999999999999999999999998765 8999999999999999886532
Q ss_pred --------------------------------------------------------------------------------
Q 039539 200 -------------------------------------------------------------------------------- 199 (484)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (484)
T Consensus 577 qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL 656 (763)
T KOG0944|consen 577 QLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKAL 656 (763)
T ss_pred HHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHH
Confidence
Q ss_pred --------------------------------------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCC
Q 039539 200 --------------------------------------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHE 235 (484)
Q Consensus 200 --------------------------------------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~ 235 (484)
.+.+.+|.|.|+|.|.| .++++|||||++|. .|
T Consensus 657 ~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmG--ts~~sGHYV~hirK-eg 733 (763)
T KOG0944|consen 657 KATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMG--TSAHSGHYVCHIRK-EG 733 (763)
T ss_pred HhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCC--CCCCCcceEEEEee-cC
Confidence 23456999999999999 47999999999997 69
Q ss_pred cEEEEcCCcceeeCcccccCCCcEEEEEEec
Q 039539 236 EWFRIDDSTVIPVKLERVLSEEAYMLLYARH 266 (484)
Q Consensus 236 ~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~ 266 (484)
+|+.|||++|- .+. +-.++.+||.||+|.
T Consensus 734 kWVlfNDeKv~-~S~-~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 734 KWVLFNDEKVA-ASQ-EPPKDLGYVYLYTRI 762 (763)
T ss_pred cEEEEcchhhh-hcc-CChhhcceEEEEEec
Confidence 99999999998 333 334689999999995
No 26
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=4.4e-33 Score=270.48 Aligned_cols=203 Identities=34% Similarity=0.597 Sum_probs=168.9
Q ss_pred chHHHHHHHHHHHhhCC---CCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcC---CCCCCcccc
Q 039539 5 HSTFDVVSCLILNAKDG---SYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFG---AKGKIAEET 78 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~---~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~---~~~~~~~~~ 78 (484)
.++.++|+.|+..|+.. ...+.|..|+..|..+.+.|..+.||||+|||..||+.|++++..... .........
T Consensus 49 ~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 128 (269)
T PF00443_consen 49 KEFLQQLQNLFRSLWSSNSSDSSISPSDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSED 128 (269)
T ss_dssp CHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEE
T ss_pred cchhhhhhhhhhhhhhhcccccceeeccccccccccccccccccccchhhhhcccccccchhhccccccccccccccccc
Confidence 46899999999999987 458999999999999999999999999999999999999998755322 011112345
Q ss_pred cccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEE
Q 039539 79 TLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTV 158 (484)
Q Consensus 79 siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i 158 (484)
+++.++|++.+...+.|..|+.. ...|
T Consensus 129 ~~~~~~f~~~~~~~~~c~~c~~~-----------------------------------------------------~~~~ 155 (269)
T PF00443_consen 129 SLISDLFGGQFESSIKCSSCKNS-----------------------------------------------------QSSI 155 (269)
T ss_dssp SHHHHHH-EEEEEEEEETTTTCE-----------------------------------------------------EEEE
T ss_pred ccccccccccccccccccccccc-----------------------------------------------------cccc
Confidence 77899999999999999999887 5688
Q ss_pred eecCCeEEEEEeeeccC----CccccccEEEcC-CcccCCcCcCCCCC---CCCeEEEEEEEEEeecCCCCCCceEEEEE
Q 039539 159 LEEPNILTIVLKRFESG----NFGKLNKSVWFP-EVLNMAPYMSRTGD---GSPMYSLYAVVVHLDVTNATFSGHYVCYV 230 (484)
Q Consensus 159 ~~lP~VLiI~LkRF~~~----~~~Ki~~~V~fP-e~LdL~~y~~~~~~---~~~~Y~L~aVVvH~G~~~~~~sGHYvayv 230 (484)
.++|++|+|+|+||.++ ...|+.+.|.|| +.|||.+++..+.. ....|+|+|||+|.| ...+|||+|||
T Consensus 156 ~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G---~~~~GHY~a~v 232 (269)
T PF00443_consen 156 SSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG---SADSGHYVAYV 232 (269)
T ss_dssp EEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES---STTSEEEEEEE
T ss_pred ccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc---ccccceEEEee
Confidence 99999999999999443 248999999999 79999999876543 357999999999999 46799999999
Q ss_pred EcCC-CcEEEEcCCcceeeCcccccC---CCcEEEEE
Q 039539 231 KNSH-EEWFRIDDSTVIPVKLERVLS---EEAYMLLY 263 (484)
Q Consensus 231 k~~~-~~W~~fnDs~V~~vs~~~v~s---~~AYmLfY 263 (484)
|+.+ ++|++|||+.|++++.++|.. .+||||||
T Consensus 233 ~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 233 RDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 8764 569999999999999999988 89999999
No 27
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-33 Score=299.62 Aligned_cols=243 Identities=30% Similarity=0.516 Sum_probs=211.8
Q ss_pred CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC----------C--C------------Ccccc
Q 039539 23 YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK----------G--K------------IAEET 78 (484)
Q Consensus 23 ~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~----------~--~------------~~~~~ 78 (484)
+.+.|..++..+++....|..+.|||||||+.++++.+.+......... + . .....
T Consensus 299 ~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~ 378 (587)
T KOG1864|consen 299 GRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRE 378 (587)
T ss_pred cccCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccch
Confidence 4799999999999999999999999999999999999987664432100 0 0 02246
Q ss_pred cccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccC-CcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEE
Q 039539 79 TLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDG-DIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLT 157 (484)
Q Consensus 79 siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~-~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~ 157 (484)
+++..+|.|++..++.|..|..++.+.+.|.+++++++. ...++..+|..|..+|.+.|+|+|.|++|...++|.+++.
T Consensus 379 ~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~ 458 (587)
T KOG1864|consen 379 NWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLK 458 (587)
T ss_pred hHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhcc
Confidence 789999999999999999999999999999999999994 3479999999999999999999999999999999999999
Q ss_pred EeecCCeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC
Q 039539 158 VLEEPNILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS 233 (484)
Q Consensus 158 i~~lP~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~ 233 (484)
+.++|.+|+||||||.++. ..|+...|.+|..|.+...+.........|.|+|||||.| .+.+.|||+||+|..
T Consensus 459 ~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G--~~p~~GHYia~~r~~ 536 (587)
T KOG1864|consen 459 IKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLG--STPNRGHYVAYVKSL 536 (587)
T ss_pred ccCCcceeeeehhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEecc--CCCCCcceEEEEeeC
Confidence 9999999999999999763 3789999999999999877665544457999999999999 679999999999985
Q ss_pred CCcEEEEcCCcceeeCcccccC---CCcEEEEEEecC
Q 039539 234 HEEWFRIDDSTVIPVKLERVLS---EEAYMLLYARHS 267 (484)
Q Consensus 234 ~~~W~~fnDs~V~~vs~~~v~s---~~AYmLfY~R~~ 267 (484)
.-.|+.|||..|..++.+.|.. ...|+++|...-
T Consensus 537 ~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 537 DFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred CCCceecccccccccCcchhhhccCCCccceeeeEEe
Confidence 5559999999999999988864 578888887765
No 28
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-33 Score=285.16 Aligned_cols=224 Identities=20% Similarity=0.232 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCC-----CCCCccccc
Q 039539 6 STFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGA-----KGKIAEETT 79 (484)
Q Consensus 6 sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~-----~~~~~~~~s 79 (484)
++..+|+.||..|+.+. .++.|..++..+. | .||||+||+..||+.|+.++...... ........+
T Consensus 65 ~~~~~L~~LF~~l~~s~~~~v~P~~~l~~l~-----~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~ 136 (343)
T cd02666 65 QFVYELRSLFNDLIHSNTRSVTPSKELAYLA-----L---RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSD 136 (343)
T ss_pred HHHHHHHHHHHHHHhCCCCccCcHHHHHhcc-----c---cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhh
Confidence 68899999999998876 6899999998765 2 99999999999999999987543211 011224467
Q ss_pred ccccceeEEEEEEEEECCCC---CeEeeEeeeeeeeeeccC---------CcCcHHHHHHhhhcceeecCCCeeecCCCC
Q 039539 80 LIGLTFGGYLRSKIKCLKCL---GKSELYERMMDLTVEIDG---------DIGTLEEALAQFTASEILVGENKYYCSRCK 147 (484)
Q Consensus 80 iI~~lF~G~l~s~i~C~~C~---~~S~~~E~f~~LsL~I~~---------~~~sLee~L~~~~~~E~Ldg~nky~C~~C~ 147 (484)
+|.++|.|++.+.++|..|+ ..+.+.|+|++|+|+|+. ...+|.++|+.|+..|.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~------------- 203 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS------------- 203 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-------------
Confidence 89999999999999999997 789999999999999986 56899999999998885
Q ss_pred ceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcCCcccCCcCcCCC--------------------------
Q 039539 148 SYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFPEVLNMAPYMSRT-------------------------- 199 (484)
Q Consensus 148 ~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fPe~LdL~~y~~~~-------------------------- 199 (484)
|.++|+||.|||+ +.+.. ..+.++++++|...++.+++...
T Consensus 204 ----------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (343)
T cd02666 204 ----------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQ 272 (343)
T ss_pred ----------hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999 43322 25777777888766665554321
Q ss_pred --CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccC------CCcEEEEEE
Q 039539 200 --GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLS------EEAYMLLYA 264 (484)
Q Consensus 200 --~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s------~~AYmLfY~ 264 (484)
......|+|+|||+|.| .+++|||++|+|+. ++.||+|||..|++++..+|+. .+||||+|+
T Consensus 273 ~~~~~~~~Y~L~avv~H~G---~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 273 FDDLKSYGYRLHAVFIHRG---EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred hcccCCCceEEEEEEEeec---CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 12567899999999999 45799999999976 5899999999999999988875 599999995
No 29
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.5e-32 Score=279.19 Aligned_cols=248 Identities=22% Similarity=0.411 Sum_probs=215.4
Q ss_pred cchHHHHHHHHHHHhhCCC-----CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 039539 4 LHSTFDVVSCLILNAKDGS-----YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEET 78 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~-----~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~ 78 (484)
+.||+|++.+|+..|+... ..|.|..|+..++.-.+.|+..+||||+|||.+||+.|..... +-..
T Consensus 347 ~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~---------S~~~ 417 (749)
T COG5207 347 LECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGER---------SYLI 417 (749)
T ss_pred chhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccc---------hhcC
Confidence 5789999999999998774 3699999999999999999999999999999999999986321 1223
Q ss_pred cccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC--cCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEE
Q 039539 79 TLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD--IGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKL 156 (484)
Q Consensus 79 siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~--~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~ 156 (484)
+.|..+|...+..++.|..|+.++...++...+.+++.++ ..++.++++.|+.+.+++ |.|++|+.+..|.++.
T Consensus 418 ~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~ 493 (749)
T COG5207 418 PPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKP 493 (749)
T ss_pred CCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccc
Confidence 5688999999999999999999999999999999999864 358999999999999998 9999999999999999
Q ss_pred EEeecCCeEEEEEeeeccCCc--cccccEEEcC--CcccCCcCcCCC---------------------------------
Q 039539 157 TVLEEPNILTIVLKRFESGNF--GKLNKSVWFP--EVLNMAPYMSRT--------------------------------- 199 (484)
Q Consensus 157 ~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fP--e~LdL~~y~~~~--------------------------------- 199 (484)
-|++||++|||+..||...++ .|+..++.+- ..+++..||+..
T Consensus 494 ~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~ 573 (749)
T COG5207 494 FIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEE 573 (749)
T ss_pred hhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHH
Confidence 999999999999999987765 6777777765 457888777641
Q ss_pred --------------------------------------------------------------------------------
Q 039539 200 -------------------------------------------------------------------------------- 199 (484)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (484)
T Consensus 574 ~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V 653 (749)
T COG5207 574 DAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRV 653 (749)
T ss_pred HHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheE
Confidence
Q ss_pred ----------------------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC---CCcEEEEcCCcceee
Q 039539 200 ----------------------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS---HEEWFRIDDSTVIPV 248 (484)
Q Consensus 200 ----------------------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~---~~~W~~fnDs~V~~v 248 (484)
......|.|.|||+|.| +++++||||+|||.. .-+|+.|||+++..+
T Consensus 654 ~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG--~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~ 731 (749)
T COG5207 654 VWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKG--DSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLN 731 (749)
T ss_pred EEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccC--CcccccceEEEEecccCcceeEEEEccchheeh
Confidence 01123599999999999 789999999999974 346999999999999
Q ss_pred CcccccCCCcEEEEEEec
Q 039539 249 KLERVLSEEAYMLLYARH 266 (484)
Q Consensus 249 s~~~v~s~~AYmLfY~R~ 266 (484)
+.-+++.++.||.||+|.
T Consensus 732 ~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 732 SSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred hhHHHHhhCCeEEEEecC
Confidence 988889999999999983
No 30
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-32 Score=312.62 Aligned_cols=259 Identities=29% Similarity=0.426 Sum_probs=225.9
Q ss_pred cchHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 039539 4 LHSTFDVVSCLILNAKDGSY-PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIG 82 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~~-~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~ 82 (484)
-.++..+|++||..|+.++. ++.|..+...+.... ....+|||+|||++.|+|.|+..+.... ....|.
T Consensus 212 ~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~--------~~~~l~ 281 (1093)
T KOG1863|consen 212 RRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK--------VENTLQ 281 (1093)
T ss_pred cchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh--------hhhhhh
Confidence 45678899999999999976 999999999998665 5567999999999999999998654333 135689
Q ss_pred cceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecC
Q 039539 83 LTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEP 162 (484)
Q Consensus 83 ~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP 162 (484)
.+|.|++.+.+.|..|...+.+.|.|+++.|++.+ ..+|.++|..|+..|+++|+|+ .|..|...+.|.+...+.+||
T Consensus 282 ~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g-~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lP 359 (1093)
T KOG1863|consen 282 DLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKG-VKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLP 359 (1093)
T ss_pred hhhcCCcceEEEEEeeeeeccccccccCccccccc-hhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCC
Confidence 99999999999999999999999999999999997 5789999999999999999999 899999999999999999999
Q ss_pred CeEEEEEeeeccC----CccccccEEEcCCcccCCcCcCC--C--CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-
Q 039539 163 NILTIVLKRFESG----NFGKLNKSVWFPEVLNMAPYMSR--T--GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS- 233 (484)
Q Consensus 163 ~VLiI~LkRF~~~----~~~Ki~~~V~fPe~LdL~~y~~~--~--~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~- 233 (484)
+||.|+|+||.++ ...|+++.++||..|+|.+|+.. . ......|.|+||++|.| .+++|||++|++..
T Consensus 360 pvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g---~~~~ghy~~~i~~~~ 436 (1093)
T KOG1863|consen 360 PVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSG---DAHSGHYVAYINPKL 436 (1093)
T ss_pred chhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhcccc---cccCccceeeecchh
Confidence 9999999999975 34899999999999999999873 1 12225999999999965 78999999999965
Q ss_pred CCcEEEEcCCcceeeCcccccC----------------CCcEEEEEEecCCCCCccccCC
Q 039539 234 HEEWFRIDDSTVIPVKLERVLS----------------EEAYMLLYARHSPRPPALIRNN 277 (484)
Q Consensus 234 ~~~W~~fnDs~V~~vs~~~v~s----------------~~AYmLfY~R~~~~~~~~~~~~ 277 (484)
.++|++|||..|..++..+|+. ..||||+|.|.+.....+....
T Consensus 437 ~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~~~~v~ 496 (1093)
T KOG1863|consen 437 DGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKILKDIS 496 (1093)
T ss_pred hccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhhhcccc
Confidence 7999999999999998777652 1389999999998765554433
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.5e-30 Score=256.85 Aligned_cols=178 Identities=21% Similarity=0.305 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC----cCcHHH
Q 039539 49 AHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD----IGTLEE 124 (484)
Q Consensus 49 A~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~----~~sLee 124 (484)
.+-|.++|++.+..+... .+ ..|+.++.+.++|++|+|+++.. ..+|++
T Consensus 69 iq~F~~fll~~i~~~~~~-----------------~~----------~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~ 121 (268)
T cd02672 69 IQNFTRFLLETISQDQLG-----------------TP----------FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQ 121 (268)
T ss_pred HHHHHHHHHHHHHHHhcc-----------------cC----------CCCCceeeccccceeeeeecCccccccCCCHHH
Confidence 467888999998764311 00 67999999999999999999853 359999
Q ss_pred HHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCC----eEEEEEeeeccCC---------ccccccEEEcCCccc
Q 039539 125 ALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPN----ILTIVLKRFESGN---------FGKLNKSVWFPEVLN 191 (484)
Q Consensus 125 ~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~----VLiI~LkRF~~~~---------~~Ki~~~V~fPe~Ld 191 (484)
+|+.++..|.. +++.|++|+.++.|.|+..|.++|+ ||+|||+||.... ..|++..|.||..++
T Consensus 122 cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~ 198 (268)
T cd02672 122 LLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDH 198 (268)
T ss_pred HHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeeccccccc
Confidence 99999999864 4599999999999999999999999 9999999998532 257888999999887
Q ss_pred CCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-----CCcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 192 MAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-----HEEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 192 L~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-----~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
+..+.........+|+|+|||+|.|. ...+|||+||||.. .++||+|||..|+++++ .||||||+
T Consensus 199 ~~~~~~~~~~~~~~Y~L~gvV~hig~--~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 199 DKLVKNRGQESIYKYELVGYVCEIND--SSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred chhhhccCCCCCceEEEEEEEEEecC--CCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 77666655556679999999999994 24799999999974 57899999999999998 99999994
No 32
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.1e-30 Score=255.91 Aligned_cols=175 Identities=25% Similarity=0.372 Sum_probs=136.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeE-EEEEEEEECCCCCeEeeEeeeeeeeeeccC--CcCc
Q 039539 45 REEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGG-YLRSKIKCLKCLGKSELYERMMDLTVEIDG--DIGT 121 (484)
Q Consensus 45 ~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G-~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~--~~~s 121 (484)
+|||+.||+.+|++.|+.-+. ++.-++|.| +...... +...|.++.|.++.+. ...+
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~-------------~~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~~~~~t 81 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL-------------EPKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDDGGGIT 81 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh-------------hHHHHHHhcCccccccc-------cccccceEEeecccCCCCCcCC
Confidence 999999999999999986332 223345533 2221111 2334667777777653 3569
Q ss_pred HHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcCCcccCCcCcCCC
Q 039539 122 LEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFPEVLNMAPYMSRT 199 (484)
Q Consensus 122 Lee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fPe~LdL~~y~~~~ 199 (484)
|++||+.|++.|. |.++|+||+||||||.++. ..|+++.|.||+.|||.+|+...
T Consensus 82 LedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~~~~~ 138 (241)
T cd02670 82 LEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADD 138 (241)
T ss_pred HHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhhcccc
Confidence 9999999999985 8899999999999999864 47999999999999999998643
Q ss_pred ----------------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCC------------CcEEEEcCCcc
Q 039539 200 ----------------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSH------------EEWFRIDDSTV 245 (484)
Q Consensus 200 ----------------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~------------~~W~~fnDs~V 245 (484)
.....+|+|+|||+|.| .++.+|||+||+|... +.|++|||..|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G--~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v 216 (241)
T cd02670 139 PRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRG--TSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMAD 216 (241)
T ss_pred cccccccccccccccccccccCCCCCeEEEEEEEEEeCC--CCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccc
Confidence 12345899999999999 4578999999999864 79999999998
Q ss_pred eeeCcc------cccCCCcEEEEEE
Q 039539 246 IPVKLE------RVLSEEAYMLLYA 264 (484)
Q Consensus 246 ~~vs~~------~v~s~~AYmLfY~ 264 (484)
+.+... .+.+++||||||+
T Consensus 217 ~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 217 RDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccchhcccCCceEEEeC
Confidence 876532 4678999999995
No 33
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-32 Score=286.46 Aligned_cols=144 Identities=41% Similarity=0.644 Sum_probs=124.7
Q ss_pred CcHHHHHHhhhcceeecCCCeeecCCCCce---------------------------eeEEEEEEEeecCCeEEEEEeee
Q 039539 120 GTLEEALAQFTASEILVGENKYYCSRCKSY---------------------------EKAKKKLTVLEEPNILTIVLKRF 172 (484)
Q Consensus 120 ~sLee~L~~~~~~E~Ldg~nky~C~~C~~~---------------------------~~a~k~~~i~~lP~VLiI~LkRF 172 (484)
.+++.||.+|++.|+|.|+|++.|++|.+. .-|+|++.|..+||||+|||+||
T Consensus 678 ~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf 757 (877)
T KOG1873|consen 678 CSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRF 757 (877)
T ss_pred ccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhh
Confidence 379999999999999999999999999541 12567888999999999999999
Q ss_pred ccC---CccccccEEEcCCcccCCcCcCCC-----CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEc------------
Q 039539 173 ESG---NFGKLNKSVWFPEVLNMAPYMSRT-----GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKN------------ 232 (484)
Q Consensus 173 ~~~---~~~Ki~~~V~fPe~LdL~~y~~~~-----~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~------------ 232 (484)
..+ +..|.++.+.|++.+||.+||..- ......|+|.|||.|.|+| ..||||+|+|.
T Consensus 758 ~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm---~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 758 FQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTM---SYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccc---cCCcchhhhhccchhhccCcccc
Confidence 743 468999999999999999998521 1234599999999999965 48999999985
Q ss_pred ---------CCCcEEEEcCCcceeeCcccccCCCcEEEEEEec
Q 039539 233 ---------SHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARH 266 (484)
Q Consensus 233 ---------~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~ 266 (484)
+.|+||.+.|+.|.++++++|+..+||||||+|.
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2478999999999999999999999999999984
No 34
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-30 Score=289.92 Aligned_cols=256 Identities=27% Similarity=0.469 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC--------------
Q 039539 7 TFDVVSCLILNAKDGSY-PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK-------------- 71 (484)
Q Consensus 7 L~~~l~~L~~~~~~~~~-~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~-------------- 71 (484)
+.-.+..|+..+|.+.. .++|..+...+....+.|.+..|||.+||+.+|+|.||+.++......
T Consensus 296 ~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~ 375 (842)
T KOG1870|consen 296 VASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQE 375 (842)
T ss_pred echhhhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhh
Confidence 34678889999999976 799999999999999999999999999999999999999887544330
Q ss_pred -------CCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeec-----------------------------
Q 039539 72 -------GKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEI----------------------------- 115 (484)
Q Consensus 72 -------~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I----------------------------- 115 (484)
.......++|..+|.|.+.+...|..|+.++.++++|..|+|++
T Consensus 376 ~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 455 (842)
T KOG1870|consen 376 VAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVA 455 (842)
T ss_pred hhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeecc
Confidence 01122467899999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 039539 116 -------------------------------------------------------------------------------- 115 (484)
Q Consensus 116 -------------------------------------------------------------------------------- 115 (484)
T Consensus 456 ~~~~~~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 535 (842)
T KOG1870|consen 456 KNGRIRDLLEYLSRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLP 535 (842)
T ss_pred ccchHHHHHHHHHHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccc
Confidence
Q ss_pred ----------------------------------------------c-----------------C---------------
Q 039539 116 ----------------------------------------------D-----------------G--------------- 117 (484)
Q Consensus 116 ----------------------------------------------~-----------------~--------------- 117 (484)
. .
T Consensus 536 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~ 615 (842)
T KOG1870|consen 536 RSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPS 615 (842)
T ss_pred cccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCCh
Confidence 0 0
Q ss_pred ------------------------------------------------------------------------------Cc
Q 039539 118 ------------------------------------------------------------------------------DI 119 (484)
Q Consensus 118 ------------------------------------------------------------------------------~~ 119 (484)
..
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (842)
T KOG1870|consen 616 EDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAP 695 (842)
T ss_pred hHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCc
Confidence 01
Q ss_pred CcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCc--cccccEEEcC-CcccCCcCc
Q 039539 120 GTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFP-EVLNMAPYM 196 (484)
Q Consensus 120 ~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fP-e~LdL~~y~ 196 (484)
.+|++||+.|+.+|.|.-+++++|+.|+.++.|.|++.+++||+|||||||||++.+. .|+.+.|+|| ..||+++|+
T Consensus 696 ~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~ 775 (842)
T KOG1870|consen 696 NSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFV 775 (842)
T ss_pred ccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhh
Confidence 3799999999999999999999999999999999999999999999999999998754 8999999999 579999998
Q ss_pred CCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEecC
Q 039539 197 SRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS 267 (484)
Q Consensus 197 ~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~ 267 (484)
...+. ..|+|+||++|+|. ..+|||+||+|+. +++||.|||+.|.+++++++.++.||+|||+|++
T Consensus 776 ~~~~~--~~Y~l~av~nHyG~---l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 776 VNKEQ--VLYDLYAVGNHYGQ---LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred ccCcc--ceeeeeeeecccCC---cCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 76544 89999999999993 6699999999994 8999999999999999999999999999999974
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.95 E-value=1.3e-27 Score=241.15 Aligned_cols=238 Identities=19% Similarity=0.322 Sum_probs=201.9
Q ss_pred CcchHHHHHHHHHHHhh-CCCC-CcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCC-----CCCCc
Q 039539 3 GLHSTFDVVSCLILNAK-DGSY-PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGA-----KGKIA 75 (484)
Q Consensus 3 gl~sL~~~l~~L~~~~~-~~~~-~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~-----~~~~~ 75 (484)
--.||.|+|+.||++|. .+++ ++.+.+|+++|+.+...-..+.|+|+++|+++||+.|+.++...... .....
T Consensus 37 ~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~ 116 (295)
T PF13423_consen 37 KEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSS 116 (295)
T ss_pred ccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccC
Confidence 35799999999999999 6654 89999999999988766667779999999999999999988665431 11223
Q ss_pred ccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccC--CcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEE
Q 039539 76 EETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDG--DIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAK 153 (484)
Q Consensus 76 ~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~--~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~ 153 (484)
...+.|.++|+......++|..|+..+.+.+....+.|..+. ...++.+.|+.++..|.... ..|++|++++..+
T Consensus 117 ~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~ 193 (295)
T PF13423_consen 117 SPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTE 193 (295)
T ss_pred CCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---cccccccccccee
Confidence 345679999999999999999999999999998888887775 34699999999999998876 8999999999999
Q ss_pred EEEEEeecCCeEEEEEeeeccCCc--cccccEEEcCCcccCCcCcCCC-------CCCCCeEEEEEEEEEeecCCCCCCc
Q 039539 154 KKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFPEVLNMAPYMSRT-------GDGSPMYSLYAVVVHLDVTNATFSG 224 (484)
Q Consensus 154 k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fPe~LdL~~y~~~~-------~~~~~~Y~L~aVVvH~G~~~~~~sG 224 (484)
.+..|.++|+||.|.++|...+.+ .|....+.+|..+++..++... .....+|+|.|+|+|.| ++..+|
T Consensus 194 ~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~--~~~~~~ 271 (295)
T PF13423_consen 194 QRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIG--DSIESG 271 (295)
T ss_pred eeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEec--CCCCCC
Confidence 999999999999999999886632 6777889999999998887543 33556999999999999 467899
Q ss_pred eEEEEEEcC---CCcEEEEcCCcc
Q 039539 225 HYVCYVKNS---HEEWFRIDDSTV 245 (484)
Q Consensus 225 HYvayvk~~---~~~W~~fnDs~V 245 (484)
|||+|||.. +.+||+|||..|
T Consensus 272 HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 272 HLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ceEEEEEcCCCCCCcEEEECcEeC
Confidence 999999975 369999999766
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-21 Score=195.40 Aligned_cols=221 Identities=28% Similarity=0.345 Sum_probs=178.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhhcCC--------------------CCC--------------------------
Q 039539 40 HLGHGREEDAHEFLRCAVDTMQSVCLKEFGA--------------------KGK-------------------------- 73 (484)
Q Consensus 40 ~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~--------------------~~~-------------------------- 73 (484)
....|.|+||.|||..+||.|++++.+.... ...
T Consensus 138 ~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r 217 (420)
T KOG1871|consen 138 SLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPR 217 (420)
T ss_pred hccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCC
Confidence 3457999999999999999999987542100 000
Q ss_pred -CcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccC-CcCcHHHHHHhhhcceeecCCCeeecCCCCceee
Q 039539 74 -IAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDG-DIGTLEEALAQFTASEILVGENKYYCSRCKSYEK 151 (484)
Q Consensus 74 -~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~-~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~ 151 (484)
..-..++|.++|+|.+++...-.. .+++...+||..|+|+|.. +..+++++|+.+...|.+.+ |.-. -+.-+.
T Consensus 218 ~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~ 292 (420)
T KOG1871|consen 218 ADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVE 292 (420)
T ss_pred CCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeec
Confidence 001246899999999999888654 6678999999999999953 46799999999999999987 5544 666788
Q ss_pred EEEEEEEeecCCeEEEEEeeeccC---CccccccEEEcCCcccCCcCcCC------CCCCCCeEEEEEEEEEeecCCCCC
Q 039539 152 AKKKLTVLEEPNILTIVLKRFESG---NFGKLNKSVWFPEVLNMAPYMSR------TGDGSPMYSLYAVVVHLDVTNATF 222 (484)
Q Consensus 152 a~k~~~i~~lP~VLiI~LkRF~~~---~~~Ki~~~V~fPe~LdL~~y~~~------~~~~~~~Y~L~aVVvH~G~~~~~~ 222 (484)
+.+++.+.++|++|++||+||.+. ...|+.+.+++|-.|.+..-+-. .......|.|.|||.|.|+ ++.
T Consensus 293 ~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgt--sat 370 (420)
T KOG1871|consen 293 ASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGT--SAT 370 (420)
T ss_pred hhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEeccc--ccc
Confidence 999999999999999999999864 55899999999988777654321 1233458999999999994 688
Q ss_pred CceEEEEEEcC-CCcEEEEcCCcceeeCcccccC----CCcEEEEEEecC
Q 039539 223 SGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLS----EEAYMLLYARHS 267 (484)
Q Consensus 223 sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s----~~AYmLfY~R~~ 267 (484)
.|||..-+-+. .+.|+.+||..|.++..++|++ .+||+|.|++.+
T Consensus 371 vghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 371 VGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred cCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 99999999865 5789999999999999999875 589999999853
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.2e-21 Score=197.38 Aligned_cols=251 Identities=22% Similarity=0.222 Sum_probs=195.0
Q ss_pred chHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCC------CCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 039539 5 HSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGH------GREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEET 78 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~------~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~ 78 (484)
..+..++..+|..|..+ .++.|..+++.+.+..|+|.. ..||||.|+...++-.++..+....... ...
T Consensus 151 ~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~----~~~ 225 (473)
T KOG1872|consen 151 RRISIETRTCFRPLCEK-GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP----CLE 225 (473)
T ss_pred hhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc----chh
Confidence 34667888999999888 899999999999999998876 7899999999999999987542221111 334
Q ss_pred cccccceeEEEEEEEEECCCCCeEee--EeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEE
Q 039539 79 TLIGLTFGGYLRSKIKCLKCLGKSEL--YERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKL 156 (484)
Q Consensus 79 siI~~lF~G~l~s~i~C~~C~~~S~~--~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~ 156 (484)
..+..+|++.+..+..|.+-...... .|.|+.|..-|......+...|+.-+..+.-.- -+.-+....-.|..
T Consensus 226 ~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K~-----s~~lgr~a~y~k~~ 300 (473)
T KOG1872|consen 226 AEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQKI-----SSILGRPAAYQKVM 300 (473)
T ss_pred HHHHHhhccccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhcc-----CcccCCChHHHHHh
Confidence 56788999999999999987666443 789999999998777777777766554333211 11111222334666
Q ss_pred EEeecCCeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCC---------------------------------
Q 039539 157 TVLEEPNILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRT--------------------------------- 199 (484)
Q Consensus 157 ~i~~lP~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~--------------------------------- 199 (484)
.|.+||.+|+|+..||.+.. ..||-+.|.||..||....+...
T Consensus 301 ~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~ 380 (473)
T KOG1872|consen 301 YISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQE 380 (473)
T ss_pred HhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCc
Confidence 89999999999999998753 36888899999999987776532
Q ss_pred -----------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCcccccC-------
Q 039539 200 -----------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLS------- 255 (484)
Q Consensus 200 -----------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s------- 255 (484)
......|+|.|||.|.| .+..+|||++++|...++|++|||+.|+.+..+.+++
T Consensus 381 ~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkg--rss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~ 458 (473)
T KOG1872|consen 381 RLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKG--RSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDW 458 (473)
T ss_pred ccccccccchhccccccccccceeeeeEeeeccc--cccCCCcceEEEeccCCceeeccccccccccccceeeecCCCcc
Confidence 11145899999999999 5788999999999988899999999999999998875
Q ss_pred CCcEEEEEEecC
Q 039539 256 EEAYMLLYARHS 267 (484)
Q Consensus 256 ~~AYmLfY~R~~ 267 (484)
..||||+|+-+.
T Consensus 459 ~~ayvllyk~~~ 470 (473)
T KOG1872|consen 459 HSAYVLLYKARV 470 (473)
T ss_pred chhhheeecccc
Confidence 589999998543
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.79 E-value=6.4e-19 Score=177.33 Aligned_cols=241 Identities=20% Similarity=0.287 Sum_probs=187.3
Q ss_pred cchHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhhcC-CCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 039539 4 LHSTFDVVSCLILNAKDGS---YPVSPIGILSKIQKIGS-HLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETT 79 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~---~~isP~~~~~~L~~~~~-~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~s 79 (484)
+..|..-|+.|+.++|..+ +.++|.++++++-.... .|.-++|-|+.|||.+||+.||.++.... +..+
T Consensus 173 ~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k-------~~~S 245 (442)
T KOG2026|consen 173 LTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK-------KASS 245 (442)
T ss_pred hHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC-------Cchh
Confidence 5567889999999999985 58999999999977654 68899999999999999999999763322 4458
Q ss_pred ccccceeEEEEEEEEECC----CCCeEeeEeeeeeeeeeccCCc-------------CcHHHHHHhhhcceeecCCCeee
Q 039539 80 LIGLTFGGYLRSKIKCLK----CLGKSELYERMMDLTVEIDGDI-------------GTLEEALAQFTASEILVGENKYY 142 (484)
Q Consensus 80 iI~~lF~G~l~s~i~C~~----C~~~S~~~E~f~~LsL~I~~~~-------------~sLee~L~~~~~~E~Ldg~nky~ 142 (484)
||+..|.|.++....=.. --......-+|+.|+|++|... ..|.+.|..|...-.-+- .
T Consensus 246 Ii~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~----~ 321 (442)
T KOG2026|consen 246 IIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEV----V 321 (442)
T ss_pred HhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeee----c
Confidence 999999999987655432 1122446679999999997531 267788888765433221 0
Q ss_pred cCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCc--cccccEEEcC-CcccCCcCcC---CCCCCCCeEEEEEEEEEee
Q 039539 143 CSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFP-EVLNMAPYMS---RTGDGSPMYSLYAVVVHLD 216 (484)
Q Consensus 143 C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fP-e~LdL~~y~~---~~~~~~~~Y~L~aVVvH~G 216 (484)
....+ ++..+.++|++||+|++||.-+++ +|..+-++|| ..+++.+... ........|.|.|-++|.
T Consensus 322 -----~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~- 394 (442)
T KOG2026|consen 322 -----TPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE- 394 (442)
T ss_pred -----chhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC-
Confidence 11223 888999999999999999998776 7899999999 5555544432 223334689999999995
Q ss_pred cCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEec
Q 039539 217 VTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARH 266 (484)
Q Consensus 217 ~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~ 266 (484)
..-|||...+++. .++||.++|-.|++...+.+.-..+||-+|++.
T Consensus 395 ----~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 395 ----DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred ----cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 3479999999876 799999999999999999988889999888874
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.53 E-value=1.9e-14 Score=157.33 Aligned_cols=255 Identities=16% Similarity=0.241 Sum_probs=173.5
Q ss_pred cchHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCC---C-------------cchHHHHHHHHHHHHHH--HH
Q 039539 4 LHSTFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHG---R-------------EEDAHEFLRCAVDTMQS--VC 64 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~---~-------------QqDA~EFl~~LLd~L~~--e~ 64 (484)
-.||.|+|+.||.+|..+. .++...+|+.+++.+...-..| . -|||.-|.....++... +|
T Consensus 536 e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~ 615 (1118)
T KOG1275|consen 536 EFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDC 615 (1118)
T ss_pred hHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHh
Confidence 3689999999999997764 4999999999998765422111 1 13333333322222111 00
Q ss_pred h---hhcCCCCC--CcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC--------cCcHHHHHHhhhc
Q 039539 65 L---KEFGAKGK--IAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD--------IGTLEEALAQFTA 131 (484)
Q Consensus 65 ~---~~~~~~~~--~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~--------~~sLee~L~~~~~ 131 (484)
. ......+. .....+.+.+.|+.++.....|..|+..+.+.-....+.+..++. .....+.|++...
T Consensus 616 ~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~ 695 (1118)
T KOG1275|consen 616 RGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS 695 (1118)
T ss_pred hhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh
Confidence 0 00011110 011235789999999999999999999977666666666655532 1234444544333
Q ss_pred ceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC------ccccccEEEcCCcccCCcCcCCC------
Q 039539 132 SEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN------FGKLNKSVWFPEVLNMAPYMSRT------ 199 (484)
Q Consensus 132 ~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~------~~Ki~~~V~fPe~LdL~~y~~~~------ 199 (484)
.+. ..+..|+.|.+.++...+..+..+|.+|.|...-+...- ..|....|.+|+++.|..--...
T Consensus 696 l~k---n~~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~ 772 (1118)
T KOG1275|consen 696 LFK---NKQAWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTI 772 (1118)
T ss_pred ccc---ccccccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeee
Confidence 222 223789999999999999999999999999888765431 14666778899887765431110
Q ss_pred ------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC---------CCcEEEEcCCcceeeCcccccC---
Q 039539 200 ------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS---------HEEWFRIDDSTVIPVKLERVLS--- 255 (484)
Q Consensus 200 ------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~---------~~~W~~fnDs~V~~vs~~~v~s--- 255 (484)
...-.+|+|.|+|+|.| ++.+.+|.|++||.. +.+||.|||..|+++++++++.
T Consensus 773 s~~~~~~~~~~d~~~~~vYeL~a~V~~I~--d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~ 850 (1118)
T KOG1275|consen 773 SDLDVSPLPDYDEPSAVVYELDAMVHAIG--DNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDG 850 (1118)
T ss_pred ccccCCCCccccCCceEEEEeeeEEEEec--cCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEecc
Confidence 11225999999999999 456789999999852 3589999999999999999875
Q ss_pred --CCcEEEEE
Q 039539 256 --EEAYMLLY 263 (484)
Q Consensus 256 --~~AYmLfY 263 (484)
+.|-||+|
T Consensus 851 ~WKvP~Il~Y 860 (1118)
T KOG1275|consen 851 PWKVPAILYY 860 (1118)
T ss_pred CccCcEEEEE
Confidence 68999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.77 E-value=3.6e-05 Score=75.31 Aligned_cols=131 Identities=18% Similarity=0.321 Sum_probs=85.7
Q ss_pred ccccccceeEEEEEEEEECCCCCeEe-eEee-eeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEE
Q 039539 78 TTLIGLTFGGYLRSKIKCLKCLGKSE-LYER-MMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKK 155 (484)
Q Consensus 78 ~siI~~lF~G~l~s~i~C~~C~~~S~-~~E~-f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~ 155 (484)
.+.|..+|.-...=...|..||+... |... .-.++--|+.. . .|....-..|.+|+.+. ..++
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pdw-h-------------PLnA~h~~pCn~C~~ks-Q~rk 184 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPDW-H-------------PLNAVHFGPCNSCNSKS-QRRK 184 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCCC-C-------------cccccccCCCcccCChH-HhHh
Confidence 46678999999999999999999843 1111 11111122211 1 11111225699997643 4567
Q ss_pred EEEeecCCeEEEEEeeeccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCC
Q 039539 156 LTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHE 235 (484)
Q Consensus 156 ~~i~~lP~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~ 235 (484)
+.+.++|+|+++|+- .| +|.. ||..|.- .-....|++.+||-+.- +--|+++++++.+|
T Consensus 185 Mvlekv~~vfmLHFV---eG----------LP~n-dl~~ysF--~feg~~Y~Vt~VIQY~~-----~~~HFvtWi~~~dG 243 (275)
T PF15499_consen 185 MVLEKVPPVFMLHFV---EG----------LPHN-DLQHYSF--HFEGCLYQVTSVIQYQA-----NLNHFVTWIRDSDG 243 (275)
T ss_pred hhhhcCchhhhhhhh---cc----------CCcc-CCCccce--eecCeeEEEEEEEEEec-----cCceeEEEEEcCCC
Confidence 789999999999865 21 2322 3333311 11345899999999863 35799999999999
Q ss_pred cEEEEcCCc
Q 039539 236 EWFRIDDST 244 (484)
Q Consensus 236 ~W~~fnDs~ 244 (484)
.|.++||=+
T Consensus 244 sWLecDDLk 252 (275)
T PF15499_consen 244 SWLECDDLK 252 (275)
T ss_pred CeEeeccCC
Confidence 999999953
No 41
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.0063 Score=68.14 Aligned_cols=199 Identities=20% Similarity=0.277 Sum_probs=112.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCC------------CCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeee
Q 039539 45 REEDAHEFLRCAVDTMQSVCLKEFGAK------------GKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLT 112 (484)
Q Consensus 45 ~QqDA~EFl~~LLd~L~~e~~~~~~~~------------~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~Ls 112 (484)
..-++.++|..++..|+.......... -...+..+++.++|+....-...|..|...+.-. ....+-
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~p-eqsS~~ 626 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYP-EQSSYG 626 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCc-chhhhh
Confidence 445788899999999987664321110 0112334678889999999999999998885432 111122
Q ss_pred eeccCC-cCcHHHHHHhhhcceeec---CCCeeecCC----CCceeeEEEEEEEeecCCeEEEEEeeeccCCccccc--c
Q 039539 113 VEIDGD-IGTLEEALAQFTASEILV---GENKYYCSR----CKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLN--K 182 (484)
Q Consensus 113 L~I~~~-~~sLee~L~~~~~~E~Ld---g~nky~C~~----C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~~Ki~--~ 182 (484)
+.+..+ ...+.-++.+....+.|. -+.+..|+. |+. ..-....|.+.|+|++|.|..=. ...+|-. +
T Consensus 627 ~~~~a~slr~~k~a~~n~~f~~ilk~i~m~~~m~cD~~~gGCgk--~n~v~h~is~~P~vftIvlewEk-~ETe~eI~~T 703 (806)
T KOG1887|consen 627 IVIAADSLRQLKCAFQNITFEDILKNIRMNDKMLCDKETGGCGK--ANLVHHILSPCPPVFTIVLEWEK-SETEKEISET 703 (806)
T ss_pred hhccchhhhhHHHHhhhhhHHHHHHHhhhhhhhcccccCCCCcc--hhhhhhhcCCCCCeeEeeeehhc-ccchHHHHHH
Confidence 222211 112222222211111111 111244543 543 23344578889999999766422 2111110 1
Q ss_pred EEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEE--EEcCCcceee-Ccccc
Q 039539 183 SVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWF--RIDDSTVIPV-KLERV 253 (484)
Q Consensus 183 ~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~--~fnDs~V~~v-s~~~v 253 (484)
...+..++|++.-...+.....+|+|+++|.-.. + .++|.|+... .+.|+ ..+|..+..+ ++.+|
T Consensus 704 ~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e--~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dv 771 (806)
T KOG1887|consen 704 TKALATEIDISRLYREGLEPNTKYRLVSMVGNHE--E---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDV 771 (806)
T ss_pred HHHHHhhhhHHHHhhhccCcCceeEEEEEeeecc--c---cceEEEeecc-CCcchhhHHHHHHhhhccchHHH
Confidence 1122345565544433445567999999998763 1 6899999996 67788 8999887776 34444
No 42
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=85.75 E-value=0.55 Score=50.60 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEeecCCeEEEEEeeeccCC--ccccccEEEcC
Q 039539 157 TVLEEPNILTIVLKRFESGN--FGKLNKSVWFP 187 (484)
Q Consensus 157 ~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fP 187 (484)
++.+.|..+||++.||..+. +.+|-..+.+|
T Consensus 517 k~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~ 549 (724)
T KOG3556|consen 517 KSTETPSCQIIQMPRFGKSQKMPAAIGPSISLP 549 (724)
T ss_pred ccccCcchhheeccccCcccccchhcCCceEee
Confidence 56788999999999996432 24444444444
No 43
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=85.30 E-value=28 Score=36.00 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEE
Q 039539 10 VVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYL 89 (484)
Q Consensus 10 ~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l 89 (484)
.++.+..++..| +|..|...+-.+ .....|+.-||+++|..||..+..+ ....+
T Consensus 132 ~l~~aw~~f~~G----~~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~~---------------------~~~~~ 185 (320)
T PF08715_consen 132 GLDEAWNEFKAG----DPAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADLD---------------------YSVTM 185 (320)
T ss_dssp HHHHHHHHHHTT------HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-TT---------------------T-EEE
T ss_pred HHHHHHHHHhCC----ChHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhcccc---------------------ceEEE
Confidence 455666666666 688999888765 4456889999999999998776542 12334
Q ss_pred EEEEEECCCCCeEee
Q 039539 90 RSKIKCLKCLGKSEL 104 (484)
Q Consensus 90 ~s~i~C~~C~~~S~~ 104 (484)
.....|..||.....
T Consensus 186 ~~~~~~c~CG~k~~~ 200 (320)
T PF08715_consen 186 TKLEVCCGCGVKQEE 200 (320)
T ss_dssp EEEEEECTTEEEEEE
T ss_pred EEeeeeccCCcceee
Confidence 444677789876543
No 44
>PF14353 CpXC: CpXC protein
Probab=67.51 E-value=9.8 Score=33.57 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=27.8
Q ss_pred EEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEE
Q 039539 92 KIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAK 153 (484)
Q Consensus 92 ~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~ 153 (484)
+++|+.|++..... -+ -.++...+ ..|.+.|. ..+ + +.+.|++|+......
T Consensus 1 ~itCP~C~~~~~~~-v~--~~I~~~~~-p~l~e~il---~g~-l---~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-VW--TSINADED-PELKEKIL---DGS-L---FSFTCPSCGHKFRLE 51 (128)
T ss_pred CcCCCCCCCeeEEE-EE--eEEcCcCC-HHHHHHHH---cCC-c---CEEECCCCCCceecC
Confidence 37899999986533 11 22222221 23444442 222 2 359999999865443
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=64.94 E-value=13 Score=35.38 Aligned_cols=42 Identities=21% Similarity=0.433 Sum_probs=29.0
Q ss_pred CceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCCC
Q 039539 223 SGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRP 270 (484)
Q Consensus 223 sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~~ 270 (484)
.||.+.+.+. .+.||.|||+.+.+..+.-. -+|+|..-+.++
T Consensus 138 ~~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~Ep 179 (193)
T PF05408_consen 138 QEHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEP 179 (193)
T ss_dssp TTEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESSSS-
T ss_pred CcceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccCccc
Confidence 6999999995 77899999999998865442 246777666443
No 46
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=56.95 E-value=8.1 Score=30.35 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=27.0
Q ss_pred CeeecCCCCceeeEEEEEEEe--ecCCeEEEEEeeec
Q 039539 139 NKYYCSRCKSYEKAKKKLTVL--EEPNILTIVLKRFE 173 (484)
Q Consensus 139 nky~C~~C~~~~~a~k~~~i~--~lP~VLiI~LkRF~ 173 (484)
|++.|++|+...-.+|.+... .+.+++-||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 457799998876666665543 68899999999984
No 47
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.60 E-value=1.5e+02 Score=26.54 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=26.0
Q ss_pred EEEEEEEECCCCCeEeeEe-eeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCce
Q 039539 88 YLRSKIKCLKCLGKSELYE-RMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSY 149 (484)
Q Consensus 88 ~l~s~i~C~~C~~~S~~~E-~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~ 149 (484)
...-...|..||+.....+ ++. +.+ .+...+ .+.||.+.. -+.|+.|+..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~-----~~~---~~~~~~--~~~~~~~~~--~~~CP~Cgs~ 116 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKES-----LDE---EIREAI--HFIPEVVHA--FLKCPKCGSR 116 (135)
T ss_pred ecceEEECCCCCCEEeccccccc-----ccc---cccccc--ccccccccc--CcCCcCCCCC
Confidence 3445689999997754321 111 111 222222 334554432 2679999874
No 48
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=26.99 E-value=1.4e+02 Score=25.56 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=37.9
Q ss_pred eEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeec
Q 039539 86 GGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEE 161 (484)
Q Consensus 86 ~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~l 161 (484)
.|...+...|..|.++.........=..+. .+.+++.|..=-..+..+. ..-.|+.|+.....-.++.+.++
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~~~~---~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRKYPK---LKEVDDVLGGDEAWENVDQ-TEATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeeccccCc---hhhhhhhcCCcccccchhh-ccCcCCCCCCCceEEEEeeeccC
Confidence 455578999999999976432222211111 1345554433111122211 12579999886655555555443
No 49
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=26.96 E-value=71 Score=30.64 Aligned_cols=66 Identities=26% Similarity=0.244 Sum_probs=40.3
Q ss_pred eecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEE
Q 039539 141 YYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVH 214 (484)
Q Consensus 141 y~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH 214 (484)
-.|..|..+...-++..|.+-|-.|..-..-|-+ .+-+|-.|--+-.+..+......|+|.|.+.-
T Consensus 23 ~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPF--------S~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 23 SHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPF--------SYLIPGHLPASMDLGSTPLVSIKYELKAEATY 88 (191)
T ss_pred CcChhHhccceeeeecceecCccccCCCcccCCe--------eEECCCCCccccccCCCCcEEEEEEEEEEEEE
Confidence 5799999988888888888888766543322222 12233333222121223345569999999887
No 50
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=25.04 E-value=2.6e+02 Score=23.05 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHH
Q 039539 5 HSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQS 62 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~ 62 (484)
-.|.+.+..++..|.....++.-..|++.|.+..+.+..- .+|-+...|..|-.
T Consensus 10 iPL~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~~P----s~e~l~~~L~~Li~ 63 (80)
T PF10264_consen 10 IPLPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIAIP----SQEVLYNTLGTLIK 63 (80)
T ss_pred eeHHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998875544 45555555555533
No 51
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=24.80 E-value=4e+02 Score=22.43 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=26.7
Q ss_pred CCcEEEEcCCcceeeCcccccCCCcEEEEEEec
Q 039539 234 HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARH 266 (484)
Q Consensus 234 ~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~ 266 (484)
.|+||.+....|.+.+..--...+.|++.+.+.
T Consensus 67 eG~vy~i~~~~V~~a~~~y~~~~~~yeI~f~~~ 99 (104)
T cd04474 67 VGKVYYISKGSVKVANKKFNTLKNDYEITFNRD 99 (104)
T ss_pred cccEEEEeccEEeeccccCCCCCCcEEEEECCC
Confidence 589999999999999865555678998887653
No 52
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=23.54 E-value=98 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=25.9
Q ss_pred EEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceee
Q 039539 207 SLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPV 248 (484)
Q Consensus 207 ~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~v 248 (484)
...|+|++. ..|++|..|- +|.||.+|=..-.|.
T Consensus 98 ~~~gfI~N~-------~~HWf~iRki-~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 98 NEFGFICNL-------SRHWFAIRKI-GGQWYNLDSKLKEPE 131 (157)
T ss_dssp CSSEEEEEC-------TTEEEEEEEE-TTEEEEECTTTSS-E
T ss_pred hceEEEecc-------CcceEEEEee-CCeeEeccCCCCCCc
Confidence 456889985 4799999885 899999997654443
No 53
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=22.74 E-value=55 Score=25.77 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=18.0
Q ss_pred eecCCCCceeeEEEEEEE--eecCCeEEEEEeeec
Q 039539 141 YYCSRCKSYEKAKKKLTV--LEEPNILTIVLKRFE 173 (484)
Q Consensus 141 y~C~~C~~~~~a~k~~~i--~~lP~VLiI~LkRF~ 173 (484)
|.|++|+...-..+.+.. ..+-.++-|+.++|.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 679999875443333322 123445556666654
No 54
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=22.63 E-value=1.4e+02 Score=33.49 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=40.8
Q ss_pred CeEEEEEeeecc---------CCc-cccc-cEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEee-cC-------CCCCC
Q 039539 163 NILTIVLKRFES---------GNF-GKLN-KSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLD-VT-------NATFS 223 (484)
Q Consensus 163 ~VLiI~LkRF~~---------~~~-~Ki~-~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G-~~-------~~~~s 223 (484)
-+|++.++|-+. .++ .-|+ ..|++..++.| +...|+|.+.||+.- .. ++..-
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~i---------ngimyrL~SAVCYK~~d~~~d~C~~~difl 549 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITI---------NGIMYRLKSAVCYKIGDQFFDGCNGNDIFL 549 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceee---------cceeeeeehhheeeccccccCCCCCCccee
Confidence 789999999642 122 2333 33455555555 345899999999862 10 11112
Q ss_pred -ceEEEEEEcCCCcEEEEcCCc
Q 039539 224 -GHYVCYVKNSHEEWFRIDDST 244 (484)
Q Consensus 224 -GHYvayvk~~~~~W~~fnDs~ 244 (484)
|||+ .++. +-.|+.+|--.
T Consensus 550 kG~yt-IlfT-e~Gpw~YDP~s 569 (666)
T PF03292_consen 550 KGYYT-ILFT-EMGPWMYDPLS 569 (666)
T ss_pred ceeEE-EEEe-cCCceeeCchh
Confidence 7765 5554 44577777543
No 55
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=21.86 E-value=1e+02 Score=27.90 Aligned_cols=34 Identities=15% Similarity=0.558 Sum_probs=28.1
Q ss_pred CeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcc
Q 039539 204 PMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTV 245 (484)
Q Consensus 204 ~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V 245 (484)
...+|.|||-. +++|++++.+.+++|.+.-...+
T Consensus 34 s~WrlqGiVg~--------~~~~~gwl~~p~g~W~Rv~~g~~ 67 (132)
T PF10748_consen 34 SQWRLQGIVGQ--------GDRWIGWLQDPQGKWLRVRQGQV 67 (132)
T ss_pred ccceEccEECC--------CCcEEEEEECCCCCeEEeccCCC
Confidence 47999999975 47999999999999998765543
No 56
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=20.74 E-value=2.9e+02 Score=23.45 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=36.5
Q ss_pred eEEEEEEEEEeecC---CCCCCc-----eEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCC
Q 039539 205 MYSLYAVVVHLDVT---NATFSG-----HYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPR 269 (484)
Q Consensus 205 ~Y~L~aVVvH~G~~---~~~~sG-----HYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~ 269 (484)
.=++...|.|--.+ .+. .| ||+..+. +.+||..|..+++...++++||+=|+-+-...
T Consensus 14 ~~~vk~li~HPMetGl~~d~-tg~~iPa~~I~~v~------v~~ng~~v~~~~~~~siS~NP~l~F~~~~~~~ 79 (100)
T PF08770_consen 14 VVEVKALISHPMETGLRKDQ-TGKYIPAHFIEEVE------VTYNGKPVFRADWGPSISENPYLRFSFKGKKS 79 (100)
T ss_dssp EEEEEEEE----B-S-BB-T-TS-BB--B-EEEEE------EEETTEEEEEEEE-TTB-SS-EEEEEEEESSS
T ss_pred cEEEEEEEECCCccccccCC-CCCCCChHheEEEE------EEECCEEEEEEEeCCcccCCCcEEEEEecCCC
Confidence 56788888885322 122 34 6666555 35799999999999999999999999987644
No 57
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=20.38 E-value=1.2e+02 Score=17.56 Aligned_cols=14 Identities=21% Similarity=0.873 Sum_probs=10.5
Q ss_pred EEEcCCCcEEEEcCC
Q 039539 229 YVKNSHEEWFRIDDS 243 (484)
Q Consensus 229 yvk~~~~~W~~fnDs 243 (484)
+++. ++.||.|++.
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 4554 6899999875
Done!