Query 039539
Match_columns 484
No_of_seqs 260 out of 1477
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 3.9E-53 1.3E-57 435.7 29.4 263 5-270 56-362 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 1.1E-51 3.7E-56 430.8 26.6 260 5-267 110-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 4.7E-51 1.6E-55 414.2 30.2 262 4-269 54-345 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 5.5E-51 1.9E-55 414.8 24.2 260 4-268 47-352 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 2.4E-50 8.3E-55 414.1 23.3 252 5-271 47-319 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 1.9E-49 6.5E-54 412.3 21.5 259 5-270 60-397 (404)
7 2f1z_A Ubiquitin carboxyl-term 100.0 1.4E-48 4.7E-53 420.9 20.6 256 5-275 216-492 (522)
8 3mhs_A Ubiquitin carboxyl-term 100.0 4.2E-47 1.4E-51 404.1 26.0 259 4-267 185-474 (476)
9 1vjv_A Ubiquitin carboxyl-term 100.0 1.8E-47 6.1E-52 400.0 21.9 243 5-267 74-414 (415)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1.6E-43 5.4E-48 400.5 26.2 244 5-267 390-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.7 7.3E-18 2.5E-22 171.7 6.3 179 5-242 52-308 (374)
12 3mp2_A Non-structural protein 92.7 2 6.7E-05 40.4 13.5 155 13-249 41-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 84.0 35 0.0012 33.8 16.6 165 9-250 131-296 (315)
14 3a43_A HYPD, hydrogenase nicke 40.5 11 0.00039 32.7 1.9 17 88-104 66-82 (139)
15 1v8h_A Sulfur oxidation protei 30.2 1.1E+02 0.0039 25.1 6.3 57 205-267 18-81 (107)
16 3rm1_A Protein S100-B; alpha-h 30.0 1.8E+02 0.0061 22.2 7.3 37 1-37 1-40 (92)
17 2oxg_Z SOXZ protein; immunoglo 24.4 1.7E+02 0.0057 24.1 6.4 57 205-267 19-82 (108)
18 2kax_A Protein S100-A5; EF-han 22.7 1.7E+02 0.0057 22.4 5.9 37 2-38 3-42 (92)
19 2lv7_A Calcium-binding protein 20.7 2.4E+02 0.0083 22.1 6.6 43 8-53 35-78 (100)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-53 Score=435.70 Aligned_cols=263 Identities=26% Similarity=0.444 Sum_probs=233.3
Q ss_pred chHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC--------CCC-
Q 039539 5 HSTFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK--------GKI- 74 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~--------~~~- 74 (484)
.+|.++|+.|+.+||.+. .+++|..|+..|+...+.|.+++||||||||.+|||.|++++....... +..
T Consensus 56 ~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~ 135 (367)
T 2y6e_A 56 GEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPD 135 (367)
T ss_dssp THHHHHHHHHHHHHTSSSCSEECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCch
Confidence 468899999999999875 4899999999999999999999999999999999999999875322110 000
Q ss_pred ------------cccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC------------------cCcHHH
Q 039539 75 ------------AEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD------------------IGTLEE 124 (484)
Q Consensus 75 ------------~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~------------------~~sLee 124 (484)
....++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|+.. ..+|++
T Consensus 136 ~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~ 215 (367)
T 2y6e_A 136 AVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRD 215 (367)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHH
T ss_pred hHHHHHHHHHHHHhcCCccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHH
Confidence 11357899999999999999999999999999999999999753 258999
Q ss_pred HHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCc--cccccEEEcCC-cccCCcCcCCCCC
Q 039539 125 ALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFPE-VLNMAPYMSRTGD 201 (484)
Q Consensus 125 ~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fPe-~LdL~~y~~~~~~ 201 (484)
||+.|+.+|.|+|+|+|.|++|+.++.|.|+..|.++|+||+|||+||.++.. .|+++.|.||. .|||.+|+.....
T Consensus 216 ~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~ 295 (367)
T 2y6e_A 216 CIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA 295 (367)
T ss_dssp HHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS
T ss_pred HHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999998753 79999999996 7999999987766
Q ss_pred CCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCCC
Q 039539 202 GSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRP 270 (484)
Q Consensus 202 ~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~~ 270 (484)
....|+|+|||+|.| ++++|||+||+|+. +++||+|||+.|+++++++|++..||||||+|++..+
T Consensus 296 ~~~~Y~L~avv~H~G---~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 296 RPYVYDLIAVSNHYG---AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp CCCEEEEEEEEEEEC---SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred CCceEEEEEEeecCC---CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence 778999999999999 36799999999986 7899999999999999999999999999999988643
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.1e-51 Score=430.75 Aligned_cols=260 Identities=28% Similarity=0.486 Sum_probs=232.3
Q ss_pred chHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCC-------C---
Q 039539 5 HSTFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKG-------K--- 73 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~-------~--- 73 (484)
.++.++|+.|+.+||.+. .+++|..|+..|+.+.+.|..++||||||||.+|||.|++++.+...... .
T Consensus 110 ~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~ 189 (396)
T 2gfo_A 110 GEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDD 189 (396)
T ss_dssp THHHHHHHHHHHHHHHSCEEEECCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCH
T ss_pred cHHHHHHHHHHHHHHcCCCceECHHHHHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccch
Confidence 367889999999999876 48999999999999999999999999999999999999998754321100 0
Q ss_pred -----------CcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC-cCcHHHHHHhhhcceeecCCCee
Q 039539 74 -----------IAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD-IGTLEEALAQFTASEILVGENKY 141 (484)
Q Consensus 74 -----------~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~-~~sLee~L~~~~~~E~Ldg~nky 141 (484)
.....++|.++|+|++.+.++|..|+..+.+.|+|++|+|+|+.. ..+|++||+.|+.+|.|+|+|+|
T Consensus 190 ~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~ 269 (396)
T 2gfo_A 190 FKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRF 269 (396)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCE
T ss_pred hhHHHHHHHHhhhccCCccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCccc
Confidence 012357899999999999999999999999999999999999964 35999999999999999999999
Q ss_pred ecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCc--cccccEEEcC-CcccCCcCcCCCCCCCCeEEEEEEEEEeecC
Q 039539 142 YCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFP-EVLNMAPYMSRTGDGSPMYSLYAVVVHLDVT 218 (484)
Q Consensus 142 ~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fP-e~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~ 218 (484)
.|++|+.++.|.|+..|.++|+||+|||+||.++.. .|+++.|.|| +.|||.+|+.........|+|+|||+|.|
T Consensus 270 ~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-- 347 (396)
T 2gfo_A 270 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-- 347 (396)
T ss_dssp EETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES--
T ss_pred ccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC--
Confidence 999999999999999999999999999999998753 7999999999 57999999987666677999999999999
Q ss_pred CCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEecC
Q 039539 219 NATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS 267 (484)
Q Consensus 219 ~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~ 267 (484)
++++|||+||+|+. +++||+|||+.|+++++++|.+..||||||+|++
T Consensus 348 -~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 348 -GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp -CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred -CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 57799999999986 6899999999999999999999999999999863
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=4.7e-51 Score=414.18 Aligned_cols=262 Identities=29% Similarity=0.482 Sum_probs=231.3
Q ss_pred cchHHHHHHHHHHHhhCC--CCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCC-------
Q 039539 4 LHSTFDVVSCLILNAKDG--SYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKI------- 74 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~--~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~------- 74 (484)
..+|.++|+.|+..||.. ..+++|..|+..|....+.|.+++||||||||.+|||.|++++..........
T Consensus 54 ~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~ 133 (348)
T 3nhe_A 54 HTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHL 133 (348)
T ss_dssp THHHHHHHHHHHHHHTTCCTTCEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTS
T ss_pred ccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccC
Confidence 457899999999999843 45899999999999999999999999999999999999999875432211100
Q ss_pred --------------cccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc---CcHHHHHHhhhcceeecC
Q 039539 75 --------------AEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI---GTLEEALAQFTASEILVG 137 (484)
Q Consensus 75 --------------~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~---~sLee~L~~~~~~E~Ldg 137 (484)
....++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|+... .+|+++|+.|+.+|.++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~ 213 (348)
T 3nhe_A 134 PDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDG 213 (348)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECG
T ss_pred CchHHHHHHHHHHHhhcCCccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecC
Confidence 123467999999999999999999999999999999999998632 399999999999999999
Q ss_pred CCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcC-CcccCCcCcCCCCCCCCeEEEEEEEEE
Q 039539 138 ENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFP-EVLNMAPYMSRTGDGSPMYSLYAVVVH 214 (484)
Q Consensus 138 ~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fP-e~LdL~~y~~~~~~~~~~Y~L~aVVvH 214 (484)
+|+|.|++|+.++.+.|+..|.++|+||+|||+||.++. ..|+++.|.|| +.|||.+|+... .....|+|+|||+|
T Consensus 214 ~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~-~~~~~Y~L~avv~H 292 (348)
T 3nhe_A 214 DEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASEN-TNHAVYNLYAVSNH 292 (348)
T ss_dssp GGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTT-CCCCEEEEEEEEEE
T ss_pred CCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCC-CCCCcEEEEEEEEc
Confidence 999999999999999999999999999999999998764 48999999999 689999998654 34568999999999
Q ss_pred eecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCC
Q 039539 215 LDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPR 269 (484)
Q Consensus 215 ~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~ 269 (484)
.| ++.+|||+||+|.. +++||+|||+.|+++++++|.+.+||||||+|+++.
T Consensus 293 ~G---~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 293 SG---TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp EE---CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC--
T ss_pred cC---CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCC
Confidence 99 36789999999985 789999999999999999999999999999998753
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=5.5e-51 Score=414.76 Aligned_cols=260 Identities=28% Similarity=0.424 Sum_probs=226.0
Q ss_pred cchHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCC--------
Q 039539 4 LHSTFDVVSCLILNAKDGS--YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGK-------- 73 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~--~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~-------- 73 (484)
..+|.++|+.|+.+||... .+++|..|+.+|++..+.|.+++||||||||.+|||.|++++.........
T Consensus 47 ~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~ 126 (355)
T 3i3t_A 47 AQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVP 126 (355)
T ss_dssp -CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC--------------
T ss_pred hhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCccc
Confidence 3578999999999999875 589999999999999999999999999999999999999987543211000
Q ss_pred ----------------------------CcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC-----cC
Q 039539 74 ----------------------------IAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD-----IG 120 (484)
Q Consensus 74 ----------------------------~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~-----~~ 120 (484)
.....++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|+.. ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~ 206 (355)
T 3i3t_A 127 SPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKV 206 (355)
T ss_dssp --------------CCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------C
T ss_pred CccccccccccCCCCCHHHHHHHHHHHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCcc
Confidence 011346799999999999999999999999999999999999853 34
Q ss_pred cHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCC--ccccccEEEcC-CcccCCcCcC
Q 039539 121 TLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGN--FGKLNKSVWFP-EVLNMAPYMS 197 (484)
Q Consensus 121 sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~--~~Ki~~~V~fP-e~LdL~~y~~ 197 (484)
+|+++|+.|+.+|.++|+|+|.|++|+.++.|.|+..|.++|+||+|||+||.++. ..|++..|.|| +.|||.+|+.
T Consensus 207 sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~ 286 (355)
T 3i3t_A 207 SLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFAS 286 (355)
T ss_dssp BHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC
T ss_pred CHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhcc
Confidence 99999999999999999999999999999999999999999999999999999764 47999999999 6699999986
Q ss_pred CCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecCC
Q 039539 198 RTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSP 268 (484)
Q Consensus 198 ~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~ 268 (484)
.. .....|+|+|||+|.| ++++|||+||+|. .++||+|||+.|+++++++|++.+||||||+|.+.
T Consensus 287 ~~-~~~~~Y~L~avv~H~G---~~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 287 DK-AGSPVYQLYALCNHSG---SVHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352 (355)
T ss_dssp -----CCEEEEEEEEEEEE---ETTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC--
T ss_pred CC-CCCcceEEEEEEEecC---CCCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccC
Confidence 43 3456899999999999 4779999999997 67799999999999999999999999999999864
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.4e-50 Score=414.08 Aligned_cols=252 Identities=26% Similarity=0.379 Sum_probs=222.5
Q ss_pred chHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccc
Q 039539 5 HSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLT 84 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~l 84 (484)
.++.++|+.||.+|+.+..+++|..|+..+. ++.|..++||||||||.+|||.|++++... ...++|.++
T Consensus 47 ~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~--------~~~s~i~~~ 116 (353)
T 1nb8_A 47 KSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT--------CVEGTIPKL 116 (353)
T ss_dssp TCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS--------TTTTHHHHH
T ss_pred ccHHHHHHHHHHHHhhcCCCCCCHHHHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC--------Cccchhhhh
Confidence 4688999999999998888999999988774 467899999999999999999999876321 123679999
Q ss_pred eeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCe
Q 039539 85 FGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNI 164 (484)
Q Consensus 85 F~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~V 164 (484)
|+|++.+.++|..|++.+.+.|+|++|+|+|++ ..+|+++|+.|+.+|.|+|+|+|.|+.|+ ++.|.|+..|.++|+|
T Consensus 117 F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~v 194 (353)
T 1nb8_A 117 FRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPV 194 (353)
T ss_dssp HCEEEEEEEEESSSCCEEEEEEEESCEEECCTT-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSE
T ss_pred ceeEEEEEEEeccCCCeeceeeeeEEEEEEECC-CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCc
Confidence 999999999999999999999999999999996 47999999999999999999999999995 6889999999999999
Q ss_pred EEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCCC-CCCCeEEEEEEEEEeecCCCCCCceEEEEEEc-CCCcEE
Q 039539 165 LTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRTG-DGSPMYSLYAVVVHLDVTNATFSGHYVCYVKN-SHEEWF 238 (484)
Q Consensus 165 LiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~~-~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~-~~~~W~ 238 (484)
|+|||+||.++. ..|+++.|.||+.|||.+|+.... .....|+|+|||+|.| .+++|||+||+|+ .+++||
T Consensus 195 L~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~v~~~~~~~W~ 271 (353)
T 1nb8_A 195 LHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG---DNHGGHYVVYLNPKGDGKWC 271 (353)
T ss_dssp EEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEES---STTCCCEEEEECTTSSSCCE
T ss_pred eEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeC---CCCCcEEEEEEecCCCCCEE
Confidence 999999998763 479999999999999999997643 3457999999999999 3679999999996 478999
Q ss_pred EEcCCcceeeCcccccC---------------CCcEEEEEEecCCCCC
Q 039539 239 RIDDSTVIPVKLERVLS---------------EEAYMLLYARHSPRPP 271 (484)
Q Consensus 239 ~fnDs~V~~vs~~~v~s---------------~~AYmLfY~R~~~~~~ 271 (484)
+|||+.|+++++++|+. .+||||||+|++..+.
T Consensus 272 ~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~~ 319 (353)
T 1nb8_A 272 KFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSE 319 (353)
T ss_dssp EEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTHHH
T ss_pred EEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchhhh
Confidence 99999999999988863 6899999999986543
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.9e-49 Score=412.26 Aligned_cols=259 Identities=23% Similarity=0.278 Sum_probs=221.5
Q ss_pred chHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCC------CCCcchHHHHHHHHHHHHHHHHhhhcCCCC------
Q 039539 5 HSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLG------HGREEDAHEFLRCAVDTMQSVCLKEFGAKG------ 72 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~------~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~------ 72 (484)
.+|.++|+.||.+|+.+..+++|..|+..|+...+.|. .+.||||||||.+|||.|++++........
T Consensus 60 ~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~ 139 (404)
T 2ayn_A 60 QYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSS 139 (404)
T ss_dssp HHHHHHHHHHHHHHHHHCSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC--------
T ss_pred cHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchh
Confidence 57999999999999988789999999999999988887 489999999999999999998743221100
Q ss_pred -----CCcccccccccceeEEEEEEEEECCCCCeE--eeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCC
Q 039539 73 -----KIAEETTLIGLTFGGYLRSKIKCLKCLGKS--ELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSR 145 (484)
Q Consensus 73 -----~~~~~~siI~~lF~G~l~s~i~C~~C~~~S--~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~ 145 (484)
......++|.++|+|++.+.++|..|++.+ .+.|+|++|+|+|++...+|+++|+.|+. |.++ +.|++
T Consensus 140 ~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~ 214 (404)
T 2ayn_A 140 SASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPT 214 (404)
T ss_dssp ----------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETT
T ss_pred hhhhhhccccCchhhhhccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchh
Confidence 001245789999999999999999999995 79999999999999876799999999987 4454 79999
Q ss_pred CCceeeEEEEEEEeecCCeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCC----------------------
Q 039539 146 CKSYEKAKKKLTVLEEPNILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRT---------------------- 199 (484)
Q Consensus 146 C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~---------------------- 199 (484)
|+..+.+.|+..|.++|+||+|||+||.++. ..|+++.|.||..|||.+|+...
T Consensus 215 c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (404)
T 2ayn_A 215 LQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQ 294 (404)
T ss_dssp TTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC-----
T ss_pred hCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchh
Confidence 9999999999999999999999999999763 48999999999999999998531
Q ss_pred ---------------------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCccc
Q 039539 200 ---------------------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLER 252 (484)
Q Consensus 200 ---------------------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~ 252 (484)
......|+|+|||+|.| .++++|||+||||+.+++||+|||+.|+++++++
T Consensus 295 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G--~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~ 372 (404)
T 2ayn_A 295 QPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQG--RSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPED 372 (404)
T ss_dssp -----------------CCCCCSCTTTTCCCSEEEEEEEEEEES--SSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHH
T ss_pred hhhhccccccccccccccccccccccCcCCCceEEEEEEEEecC--CCCCCCCeEEEEECCCCeEEEeecccceecCHHH
Confidence 12347899999999999 3588999999999878999999999999999999
Q ss_pred ccCCC-------cEEEEEEecCCCC
Q 039539 253 VLSEE-------AYMLLYARHSPRP 270 (484)
Q Consensus 253 v~s~~-------AYmLfY~R~~~~~ 270 (484)
|+... ||||||+|++...
T Consensus 373 v~~~~~g~~~~~aYiLfY~r~~~~~ 397 (404)
T 2ayn_A 373 ILRLSGGGDWHIAYVLLYGPRRVEI 397 (404)
T ss_dssp HGGGGSSSSSCEEEEEEEECC----
T ss_pred HHhhhCCCCCceEEEEEEEecCCCC
Confidence 98765 9999999988653
No 7
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=420.92 Aligned_cols=256 Identities=26% Similarity=0.375 Sum_probs=226.0
Q ss_pred chHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccc
Q 039539 5 HSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLT 84 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~l 84 (484)
.++.++|++||.+|+.+..++.|..|+..+. .+.|..++||||||||++|||.|++++... ...++|.++
T Consensus 216 ~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~--------~~~s~i~~l 285 (522)
T 2f1z_A 216 KSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT--------CVEGTIPKL 285 (522)
T ss_dssp TCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS--------TTTTHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCccCcHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC--------ccccchhhh
Confidence 4688999999999999888999999987764 367899999999999999999999976421 123679999
Q ss_pred eeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCe
Q 039539 85 FGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNI 164 (484)
Q Consensus 85 F~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~V 164 (484)
|+|++.+.++|..|++.+.+.|+|++|+|+|++ ..+|+++|+.|+.+|.|+|+|+|.|+.|+ ++.|.|+..|.++|+|
T Consensus 286 F~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~v 363 (522)
T 2f1z_A 286 FRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPV 363 (522)
T ss_dssp HCEEEEEEECCSSSCCCCCEEEEESCEEECCTT-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSE
T ss_pred eeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCC-cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCce
Confidence 999999999999999999999999999999996 47999999999999999999999999995 5889999999999999
Q ss_pred EEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCCC-CCCCeEEEEEEEEEeecCCCCCCceEEEEEEc-CCCcEE
Q 039539 165 LTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRTG-DGSPMYSLYAVVVHLDVTNATFSGHYVCYVKN-SHEEWF 238 (484)
Q Consensus 165 LiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~~-~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~-~~~~W~ 238 (484)
|+|||+||.++. ..|+++.|.||+.|||.+|+.... .....|+|+|||+|.| .+++|||+||+|+ .+++||
T Consensus 364 L~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~v~~~~~~~W~ 440 (522)
T 2f1z_A 364 LHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG---DNHGGHYVVYLNPKGDGKWC 440 (522)
T ss_dssp EEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEC---SSSCSEEEEEECTTSSSCCE
T ss_pred EEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEecc---cCCCceEEEEEecCCCCCEE
Confidence 999999998763 479999999999999999997643 3457999999999999 3679999999996 478999
Q ss_pred EEcCCcceeeCcccccC---------------CCcEEEEEEecCCCCCcccc
Q 039539 239 RIDDSTVIPVKLERVLS---------------EEAYMLLYARHSPRPPALIR 275 (484)
Q Consensus 239 ~fnDs~V~~vs~~~v~s---------------~~AYmLfY~R~~~~~~~~~~ 275 (484)
+|||+.|++++.++|+. .+||||||+|++.....+..
T Consensus 441 ~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~~~~~~ 492 (522)
T 2f1z_A 441 KFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQA 492 (522)
T ss_dssp EEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHHHHTCC
T ss_pred EEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchHHhhcc
Confidence 99999999999998874 57999999999875444333
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=4.2e-47 Score=404.10 Aligned_cols=259 Identities=28% Similarity=0.462 Sum_probs=224.0
Q ss_pred cchHHHHHHHHHHHhhCCC----------CCcCHHHHHHHH---HhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCC
Q 039539 4 LHSTFDVVSCLILNAKDGS----------YPVSPIGILSKI---QKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGA 70 (484)
Q Consensus 4 l~sL~~~l~~L~~~~~~~~----------~~isP~~~~~~L---~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~ 70 (484)
..++.++|..|+.+++... ..+.|..++..+ .+..+.|.+++||||||||.+|||.|++++......
T Consensus 185 ~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~ 264 (476)
T 3mhs_A 185 DKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPN 264 (476)
T ss_dssp TTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccc
Confidence 4578899999999998742 145666665555 488889999999999999999999999987654321
Q ss_pred -----CCCCcccccccccceeEEEEEEEEECCCCCeEe-eEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecC
Q 039539 71 -----KGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSE-LYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCS 144 (484)
Q Consensus 71 -----~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~-~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~ 144 (484)
........++|.++|+|++.+.++|..|+.++. +.++|++|+|+|++ ..+|+++|+.|+.+|.+++.+ |.|+
T Consensus 265 ~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~ 342 (476)
T 3mhs_A 265 AKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCG 342 (476)
T ss_dssp -------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEET
T ss_pred cccccccccccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh-hhHHHHHHHHhcChhhccCCC-CcCC
Confidence 112233467899999999999999999999975 59999999999996 479999999999999999755 9999
Q ss_pred CCCceeeEEEEEEEeecCCeEEEEEeeeccC---CccccccEEEcCCcccCCcCcCCCCC---------CCCeEEEEEEE
Q 039539 145 RCKSYEKAKKKLTVLEEPNILTIVLKRFESG---NFGKLNKSVWFPEVLNMAPYMSRTGD---------GSPMYSLYAVV 212 (484)
Q Consensus 145 ~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~---~~~Ki~~~V~fPe~LdL~~y~~~~~~---------~~~~Y~L~aVV 212 (484)
+|+.++.+.|+..|.++|+||+|||+||.++ ...|+++.|.||+.|||.+|+..... ....|+|+|||
T Consensus 343 ~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv 422 (476)
T 3mhs_A 343 ECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIV 422 (476)
T ss_dssp TTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEE
T ss_pred ccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEE
Confidence 9999999999999999999999999999864 34799999999999999999875432 34689999999
Q ss_pred EEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecC
Q 039539 213 VHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS 267 (484)
Q Consensus 213 vH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~ 267 (484)
+|.| .+++|||+||+|..+++||+|||+.|+++++++|++.+||||||+|+.
T Consensus 423 ~H~G---~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 423 SHKG---TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp EEEE---CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred EeCC---CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 9999 477999999999878999999999999999999999999999999975
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.8e-47 Score=399.96 Aligned_cols=243 Identities=19% Similarity=0.247 Sum_probs=210.4
Q ss_pred chHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCC-------CCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 039539 5 HSTFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLG-------HGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAE 76 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~-------~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~ 76 (484)
.++.++|+.||..|+.+. .+++|..|+..|+...+.|. .+.||||||||.+|||.|++++..
T Consensus 74 ~~l~~~l~~lf~~l~~~~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------- 143 (415)
T 1vjv_A 74 KQIVIEMKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------- 143 (415)
T ss_dssp HHHHHHHHHHHHHHHCC-CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----------
T ss_pred hHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----------
Confidence 489999999999999986 69999999999999999998 789999999999999999998732
Q ss_pred cccccccceeEEEEEEEEECCCCCeE--eeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEE
Q 039539 77 ETTLIGLTFGGYLRSKIKCLKCLGKS--ELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKK 154 (484)
Q Consensus 77 ~~siI~~lF~G~l~s~i~C~~C~~~S--~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k 154 (484)
++|.++|+ .+.+.++|..|+..+ .+.|+|++|+|+|++...+|+++|+.|+.. .++ +.|+.|+..+.+.|
T Consensus 144 --~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k 215 (415)
T 1vjv_A 144 --KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSV 215 (415)
T ss_dssp --HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEE
T ss_pred --chHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEE
Confidence 67999999 999999999999996 599999999999998767999999999974 443 78999999999999
Q ss_pred EEEEeecCCeEEEEEeeeccCC----ccccccEEEcCCcccCCcCcCCC-------------------------------
Q 039539 155 KLTVLEEPNILTIVLKRFESGN----FGKLNKSVWFPEVLNMAPYMSRT------------------------------- 199 (484)
Q Consensus 155 ~~~i~~lP~VLiI~LkRF~~~~----~~Ki~~~V~fPe~LdL~~y~~~~------------------------------- 199 (484)
+..|.++|+||+|||+||.++. ..|+++.|.||..|||.+|+...
T Consensus 216 ~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~ 295 (415)
T 1vjv_A 216 EKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKF 295 (415)
T ss_dssp EEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccc
Confidence 9999999999999999998763 38999999999999999997531
Q ss_pred --------------------------------------------CCCCCeEEEEEEEEEeecCCCCCCceEEEEEEc--C
Q 039539 200 --------------------------------------------GDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKN--S 233 (484)
Q Consensus 200 --------------------------------------------~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~--~ 233 (484)
......|+|+|||+|.| .++++|||+||||+ .
T Consensus 296 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G--~s~~~GHY~a~vr~~~~ 373 (415)
T 1vjv_A 296 DPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQG--ANSESGHYQAFIRDELD 373 (415)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEES--SSTTSSEEEEEEECSSC
T ss_pred cccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecC--CCCCCCCEEEEEeCCCC
Confidence 12347899999999999 35889999999998 5
Q ss_pred CCcEEEEcCCcceeeCcccccCCC-------cEEEEEEecC
Q 039539 234 HEEWFRIDDSTVIPVKLERVLSEE-------AYMLLYARHS 267 (484)
Q Consensus 234 ~~~W~~fnDs~V~~vs~~~v~s~~-------AYmLfY~R~~ 267 (484)
+++||+|||+.|+++++++|+... ||||||+|+.
T Consensus 374 ~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 374 ENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp TTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 899999999999999999998765 9999999975
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-43 Score=400.50 Aligned_cols=244 Identities=23% Similarity=0.340 Sum_probs=216.5
Q ss_pred chHHHHHHHHHHHhhCC---------------------CCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHH
Q 039539 5 HSTFDVVSCLILNAKDG---------------------SYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSV 63 (484)
Q Consensus 5 ~sL~~~l~~L~~~~~~~---------------------~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e 63 (484)
.++.++|++|+..|+.+ ..+++|..|+..|+...+.|..++||||||||.+|||.|+++
T Consensus 390 ~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~e 469 (854)
T 3ihp_A 390 QDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERN 469 (854)
T ss_dssp GCHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHH
Confidence 47889999999999864 348999999999999999999999999999999999999997
Q ss_pred HhhhcCCCCCCcccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCc------------------------
Q 039539 64 CLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDI------------------------ 119 (484)
Q Consensus 64 ~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~------------------------ 119 (484)
+.. .++|.++|+|++.+.++|..|++++.+.++|++|+|+|+...
T Consensus 470 l~~-----------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~ 538 (854)
T 3ihp_A 470 CRS-----------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMAL 538 (854)
T ss_dssp CTT-----------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred hcc-----------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccc
Confidence 621 256899999999999999999999999999999999998521
Q ss_pred -------CcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccC---CccccccEEEcCCc
Q 039539 120 -------GTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESG---NFGKLNKSVWFPEV 189 (484)
Q Consensus 120 -------~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~---~~~Ki~~~V~fPe~ 189 (484)
.+|++||+.|+.+|.|+| |.|++|+.++.|.|+..|.+||+||+|||+||.++ ...|+++.|.||+.
T Consensus 539 ~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~ 615 (854)
T 3ihp_A 539 PELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEE 615 (854)
T ss_dssp CCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSE
T ss_pred cccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCc
Confidence 389999999999999997 99999999999999999999999999999999985 23799999999999
Q ss_pred ccCCcCcCCCC---------------------------------------------------------------------
Q 039539 190 LNMAPYMSRTG--------------------------------------------------------------------- 200 (484)
Q Consensus 190 LdL~~y~~~~~--------------------------------------------------------------------- 200 (484)
|||.+|+....
T Consensus 616 LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~ 695 (854)
T 3ihp_A 616 LDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 695 (854)
T ss_dssp EECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSC
T ss_pred EehHHhccCCCCCCceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcc
Confidence 99999965210
Q ss_pred --------------------------------------------------------------------------------
Q 039539 201 -------------------------------------------------------------------------------- 200 (484)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (484)
T Consensus 696 di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~ 775 (854)
T 3ihp_A 696 DFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRS 775 (854)
T ss_dssp GGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------
T ss_pred cccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccccccccccccccccc
Confidence
Q ss_pred ----------------CCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEE
Q 039539 201 ----------------DGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYA 264 (484)
Q Consensus 201 ----------------~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~ 264 (484)
..+..|+|+|||+|.| .++++||||||||. +++||+|||+.|+++ ++...+.||||||+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G--~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~ 850 (854)
T 3ihp_A 776 AADSISESVPVGPKVRDGPGKYQLFAFISHMG--TSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQ 850 (854)
T ss_dssp ------------CCCCCCCSEEEEEEEEEEES--SCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEE
T ss_pred ccccccccccccCCCCCCCceEEEEEEEEeec--CCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEE
Confidence 0112699999999999 46789999999997 799999999999997 45677899999999
Q ss_pred ecC
Q 039539 265 RHS 267 (484)
Q Consensus 265 R~~ 267 (484)
|.+
T Consensus 851 R~~ 853 (854)
T 3ihp_A 851 RVA 853 (854)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.70 E-value=7.3e-18 Score=171.72 Aligned_cols=179 Identities=24% Similarity=0.313 Sum_probs=122.6
Q ss_pred chHHHHH-HHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCC-----CCcchHHHHHHHHHHHHHHH-Hh-hhcCCCCCCcc
Q 039539 5 HSTFDVV-SCLILNAKDGSYPVSPIGILSKIQKIGSHLGH-----GREEDAHEFLRCAVDTMQSV-CL-KEFGAKGKIAE 76 (484)
Q Consensus 5 ~sL~~~l-~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~-----~~QqDA~EFl~~LLd~L~~e-~~-~~~~~~~~~~~ 76 (484)
+.|..+| ..|+..|.. .++.|..++..|++..++|.. ++||||.||+..||..|... .. +.... ... .
T Consensus 52 ~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~-~~~-~ 127 (374)
T 2vhf_A 52 SETQELLRTEIVNPLRI--YGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSA-GQK-V 127 (374)
T ss_dssp HHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEET-TCC-C
T ss_pred HHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccc-ccc-c
Confidence 3577788 888999986 789999999999999887764 68999999999999998764 21 11100 000 1
Q ss_pred cccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEE
Q 039539 77 ETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKL 156 (484)
Q Consensus 77 ~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~ 156 (484)
..+++.++|. .+. + .. ...+.++.++.-+-.+-|
T Consensus 128 ~~~~~~q~f~--------------E~~--e---~~------~~e~~~qL~e~nfl~~gi--------------------- 161 (374)
T 2vhf_A 128 QDCYFYQIFM--------------EKN--E---KV------GVPTIQQLLEWSFINSNL--------------------- 161 (374)
T ss_dssp EEESCEECCC--------------CCC-------C------CCCBHHHHHHHHHHHHTE---------------------
T ss_pred cccHHHHHhc--------------Ccc--c---cc------CCcHHHHhhhHHHHHcCC---------------------
Confidence 1134555555 000 0 00 023555555432222221
Q ss_pred EEeecCCeEEEEEeeeccCCccccccEEEcCCcccCCcCcCCC---------------------------C---------
Q 039539 157 TVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRT---------------------------G--------- 200 (484)
Q Consensus 157 ~i~~lP~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~---------------------------~--------- 200 (484)
.|.++|++|+||+.|| ++-.||..+|.||.+||+.+++... +
T Consensus 162 kisrLP~yLtVq~vRF--gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~ 239 (374)
T 2vhf_A 162 KFAEAPSCLIIQMPRF--GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCN 239 (374)
T ss_dssp EESSCCSEEEEECCCC--SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHH
T ss_pred eeecCCcceEEeeecc--CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhh
Confidence 3999999999999999 4557999999999999997765321 0
Q ss_pred --------------------------------CCCCeEEEEEEEEEeecCCCCCCceEEEEEEc--CCCcEEEEcC
Q 039539 201 --------------------------------DGSPMYSLYAVVVHLDVTNATFSGHYVCYVKN--SHEEWFRIDD 242 (484)
Q Consensus 201 --------------------------------~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~--~~~~W~~fnD 242 (484)
.....|+|.|||+ . ++||||+|||. .+++|++||-
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-a------dsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 240 TQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-I------ETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp HHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-E------ETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-c------cCCceEEEEEecCCCCCeEEEec
Confidence 0115899999999 3 37999999997 4799999984
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=92.69 E-value=2 Score=40.39 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=89.2
Q ss_pred HHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEEEEEE
Q 039539 13 CLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSK 92 (484)
Q Consensus 13 ~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~l~s~ 92 (484)
.+..++..| .|..|...+-.+. ....|+--||+++|..|+..+. ...+...
T Consensus 41 ~aw~~f~~G----d~~~fV~~~Ya~~-~~~~G~~gDa~~~L~~Ll~~~~------------------------~a~~v~~ 91 (211)
T 3mp2_A 41 EAWEKFKKG----DVMDFVNLCYAAT-TLARGHSGDAEYLLELMLNDYS------------------------TAKIVLA 91 (211)
T ss_dssp HHHHHHTTT----CCHHHHHHHHHHH-TCCTTSCCCHHHHHHHHHTTCC------------------------CEEEEEE
T ss_pred HHHHHHhCC----ChHHHHHHHHHHc-CCCCCCCcCHHHHHHHHHHhhc------------------------cceEEEE
Confidence 344444444 6888888887665 4568899999999999972211 2334556
Q ss_pred EEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeee
Q 039539 93 IKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRF 172 (484)
Q Consensus 93 i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF 172 (484)
+.|. |+. +.+.+...-+.+..- ..+-+.-.|..|++... .++...|-.++|.=.
T Consensus 92 ~~C~-Cg~---~~~~~~G~v~~~~~~----------------~~~~~~g~C~~c~~~~~----~~v~~v~Gt~i~~~~-- 145 (211)
T 3mp2_A 92 AKCG-CGE---KEIVLERAVFKLTPL----------------KESFNYGVCGDCMQVNT----CRFLSVEGSGVFVHD-- 145 (211)
T ss_dssp EEET-TEE---EEEEEEESEEESCCB----------------SSCEEEEECTTTCCEEE----EEEEEEEEEEEEEEE--
T ss_pred EEEc-CCC---ceEEEeeeEEEEEee----------------ecCCCceECCCCCceeE----EEEEEeeeeEEEEcC--
Confidence 7887 877 333344444444320 01111138999976432 233344443332211
Q ss_pred ccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeC
Q 039539 173 ESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVK 249 (484)
Q Consensus 173 ~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~vs 249 (484)
..|..+++....- +=.+.++..| +.++|||+.+... .+ +.+|-..+.+++
T Consensus 146 ------------~~~~~v~~~~~~v---------~~~~~~vF~G---~~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 146 ------------ILSKQTPEAMFVV---------KPVMHAVYTG---TTQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp ------------EECSCCCGGGBSS---------CCSEEEEEES---CTTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred ------------CCCccccccccee---------eceeEEEEEc---CCCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 0233344432211 1124455577 5679999999875 33 899999998886
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=84.05 E-value=35 Score=33.80 Aligned_cols=165 Identities=13% Similarity=0.177 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccceeEE
Q 039539 9 DVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGY 88 (484)
Q Consensus 9 ~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~lF~G~ 88 (484)
..++.+..++..| .|..|...+-.+... ..|+--||+++|..||.... +. ..+
T Consensus 131 ~~l~~aw~~f~~G----d~~~FVa~~Ya~~~~-~~G~~gDa~~~L~~Ll~~~~-------------------v~---ta~ 183 (315)
T 2fe8_A 131 PALQEAYYRARAG----DAANFCALILAYSNK-TVGELGDVRETMTHLLQHAN-------------------LE---SAK 183 (315)
T ss_dssp HHHHHHHHHHHHT----CCHHHHHHHHHHTTC-CTTSCCCHHHHHHHHHTTBC-------------------CT---TCE
T ss_pred HHHHHHHHHHhCC----ChHHHHHHHHHhcCC-CCCCCccHHHHHHHHHhcCC-------------------ee---eEE
Confidence 3556666666666 688899888777554 58899999999999932210 11 112
Q ss_pred EEEEEEECCCCCeEeeEeeeeeeeeec-cCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEE
Q 039539 89 LRSKIKCLKCLGKSELYERMMDLTVEI-DGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTI 167 (484)
Q Consensus 89 l~s~i~C~~C~~~S~~~E~f~~LsL~I-~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI 167 (484)
....+.|..|+....... ..-..+ .+ ..++.+ |.. |. -.|-.|+... ..+..-.+.|=+|+-
T Consensus 184 ~~~~~~C~~Cg~~~~~~~---G~~a~~~~~-~~~~~~-~~~--------G~--~~~c~Cg~~~--~~~v~~~~g~~i~~s 246 (315)
T 2fe8_A 184 RVLNVVCKHCGQKTTTLT---GVEAVMYMG-TLSYDN-LKT--------GV--SIPCVCGRDA--TQYLVQQESSFVMMS 246 (315)
T ss_dssp EEEEEEETTTEEEEEEEE---THHHHEEES-CSCHHH-HHH--------CE--EEECTTSSEE--EEEEEEEESSEEEEE
T ss_pred EEEeeecCCCCCCeEEEe---ccEEEEEec-cCchHH-hhc--------CC--cccccCCCEe--EEEEEEeecCEEEEe
Confidence 223478999975433221 111111 00 112222 211 20 1488887532 333344556665553
Q ss_pred EEeeeccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCccee
Q 039539 168 VLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIP 247 (484)
Q Consensus 168 ~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnDs~V~~ 247 (484)
+-. ..+. +.. . .+ ++..+..| +.++|||+.+... .+ =+++|-..+.+
T Consensus 247 ~~p-----------~~~~------~~~-------~--~~--~~a~vF~G---~~~~GHYt~~~~~-~~-~~~~Dg~~~~~ 293 (315)
T 2fe8_A 247 APP-----------AEYK------LQQ-------G--TF--LCANEYTG---NYQCGHYTHITAK-ET-LYRIDGAHLTK 293 (315)
T ss_dssp EEE-----------EEEE------EET-------T--SC--SEEEEEES---CGGGCEEEEEEES-SS-EEEEETTEEEE
T ss_pred CCC-----------Cccc------ccC-------C--ce--EEEEEEEC---CCCccceEEEecC-Cc-eeEEeCCccee
Confidence 321 1111 110 0 11 33444577 4569999999873 23 38999999999
Q ss_pred eCc
Q 039539 248 VKL 250 (484)
Q Consensus 248 vs~ 250 (484)
++.
T Consensus 294 ~~~ 296 (315)
T 2fe8_A 294 MSE 296 (315)
T ss_dssp ESE
T ss_pred ccc
Confidence 875
No 14
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=40.46 E-value=11 Score=32.74 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.4
Q ss_pred EEEEEEEECCCCCeEee
Q 039539 88 YLRSKIKCLKCLGKSEL 104 (484)
Q Consensus 88 ~l~s~i~C~~C~~~S~~ 104 (484)
...-..+|.+||+...-
T Consensus 66 ~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EECCEEEETTTCCEEEG
T ss_pred ecCCcEECCCCCCEEec
Confidence 34456889999998653
No 15
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=30.23 E-value=1.1e+02 Score=25.09 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=42.6
Q ss_pred eEEEEEEEEEeecCC---C----CCCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecC
Q 039539 205 MYSLYAVVVHLDVTN---A----TFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS 267 (484)
Q Consensus 205 ~Y~L~aVVvH~G~~~---~----~~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~ 267 (484)
..++...|.|--.+| + .--.||+..+. +.+||..|..+++....+++||+=|+-+-.
T Consensus 18 ~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~------~~~ng~~v~~~~~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 18 EFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVE------VYFEGEKVAEARPGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE------EEETTEEEEEECCCSSCCSSCEEEEEEECC
T ss_pred cEEEEEEeECCCCccccccccCCcCchHheEEEE------EEECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 566777788853111 0 11268888887 348999999999999999999999998864
No 16
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=29.96 E-value=1.8e+02 Score=22.21 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=28.6
Q ss_pred CCCcchHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhh
Q 039539 1 MPGLHSTFDVVSCLILNAKDGSY---PVSPIGILSKIQKI 37 (484)
Q Consensus 1 ~~gl~sL~~~l~~L~~~~~~~~~---~isP~~~~~~L~~~ 37 (484)
|+.|..-..++..+|..+-.+.+ .|+..+|...|...
T Consensus 1 ~~~le~~~~~l~~~F~~~D~~dG~~g~Is~~EL~~~l~~~ 40 (92)
T 3rm1_A 1 MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNE 40 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHccCCCCcCeECHHHHHHHHHHH
Confidence 55566667788888888864444 99999999999883
No 17
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=24.45 E-value=1.7e+02 Score=24.11 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=42.5
Q ss_pred eEEEEEEEEEeecCCCC-------CCceEEEEEEcCCCcEEEEcCCcceeeCcccccCCCcEEEEEEecC
Q 039539 205 MYSLYAVVVHLDVTNAT-------FSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS 267 (484)
Q Consensus 205 ~Y~L~aVVvH~G~~~~~-------~sGHYvayvk~~~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~ 267 (484)
..++...|.|--.+|-. --.||+..+. +.+||..|..+++....+++||+=|+-+-.
T Consensus 19 ~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~------~~~ng~~v~~~~~~~~iS~NP~~~F~~~~~ 82 (108)
T 2oxg_Z 19 TVTVKALISHKMESGQRKDADGKLIPRSIINRFT------CELNGVNVVDVAIDPAVSTNPYFEFDAKVD 82 (108)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE------EEETTEEEEEEEECTTBCSSCEEEEEEEEC
T ss_pred CEEEEEEeECCCccccccCcCCCccchHheEEEE------EEECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 45677778885321111 1268888887 348999999999999999999999998864
No 18
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=22.67 E-value=1.7e+02 Score=22.38 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=27.7
Q ss_pred CCcchHHHHHHHHHHHhh--CCCC-CcCHHHHHHHHHhhc
Q 039539 2 PGLHSTFDVVSCLILNAK--DGSY-PVSPIGILSKIQKIG 38 (484)
Q Consensus 2 ~gl~sL~~~l~~L~~~~~--~~~~-~isP~~~~~~L~~~~ 38 (484)
+.|..-..++...|..+- .+.+ .|++.+|...|+...
T Consensus 3 ~~l~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~ 42 (92)
T 2kax_A 3 TPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL 42 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHc
Confidence 445555677888888876 4566 899999999998753
No 19
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.75 E-value=2.4e+02 Score=22.06 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=31.6
Q ss_pred HHHHHHHHHHh-hCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHH
Q 039539 8 FDVVSCLILNA-KDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFL 53 (484)
Q Consensus 8 ~~~l~~L~~~~-~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl 53 (484)
..+|...|..+ ..+.+.|+..+|...|+.++..+. ++++.+++
T Consensus 35 ~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~---~~ei~~l~ 78 (100)
T 2lv7_A 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPN---EVELEVII 78 (100)
T ss_dssp HHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCC---TTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC---HHHHHHHH
Confidence 46788889988 445679999999999999876543 34455443
Done!