BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039540
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
+SC +V + PC+SY RG+ PSA CCSG + ++N A++ A ++ C C++ + A V
Sbjct: 2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 61
Query: 64 PYDKNLIPLIPQKCG--IPLTLPPIDAKTDCSKV 95
+ IP KCG IP T I TDCS+V
Sbjct: 62 GLNAGNAASIPSKCGVSIPYT---ISTSTDCSRV 92
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14
Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
++C +V + PCL+Y RG PSAACCSG + + A + A ++ C C++ + +
Sbjct: 1 ITCGQVNSAVGPCLTYARGGA-GPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 64 PYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKVA 96
+ IP KCG+ + I A DCS+V+
Sbjct: 60 GLNAGNAASIPSKCGVSVPY-TISASIDCSRVS 91
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 3 LLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASV 62
+++C +V L PC+ Y+RG P A CC+G + ++N A++ ++ C C+++ ASV
Sbjct: 1 MITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASV 59
Query: 63 GPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95
+ N +P KCG+ + I A T+C+ V
Sbjct: 60 PGVNPNNAAALPGKCGVSIPY-KISASTNCATV 91
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
++C +V +L PCL+YLR P CC G + + N A++ ++ CTC++ + ++
Sbjct: 2 ITCGQVTSNLAPCLAYLR--NTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 64 PYDKNLIPLIPQKCG--IPLTLPPIDAKTDCSKV 95
+ +P CG IP + P TDCSKV
Sbjct: 60 GINLGKAAGLPSTCGVNIPYKISP---STDCSKV 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
L+C +V + PCL+Y++G PS CC+G + + N A+S ++ VC C++ +
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 64 PYDKNLIPLIPQKC--GIPLTLPPIDAKTDCSKV 95
+ N IP KC +P T+ P DCS++
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISP---DIDCSRI 90
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
+SC V DL PCL+YL G PS CC G +K+ A + ++ C C++ + S+
Sbjct: 2 ISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 64 PYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95
+ N +P KCG+ + I T+C+ V
Sbjct: 61 KLNTNNAAALPGKCGVNIPY-KISTTTNCNTV 91
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
L+C +V + PCL+Y++G PS CC+G + + N A+S ++ VC C++ +
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 64 PYDKNLIPLIPQKC--GIPLTLPPIDAKTDCSKV 95
+ N IP KC +P T+ P DCS++
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISP---DIDCSRI 90
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer
Protein
Length = 90
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
+ C V + PCLSY++G PS CC G + + N A+SQ+ ++ C C++ +
Sbjct: 1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 64 PYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95
+++ IP KCG+ L I DCS+V
Sbjct: 60 NLNEDNARSIPPKCGVNLPY-TISLNIDCSRV 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 6 CDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPY 65
C V + PCLSY++G PS CC G + + N A+SQ+ ++ C C++ +
Sbjct: 3 CGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61
Query: 66 DKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95
+++ IP KCG+ L I DCS+V
Sbjct: 62 NEDNARSIPPKCGVNLPY-TISLNIDCSRV 90
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 4 LSCDEVILDLVPCLSYL-RGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASV 62
++C +V +L C+ +L +G PS CC+G + I N +++ A ++ VC+C++ + +V
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58
Query: 63 GPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95
+ N +P KCG+ + I T+C+ +
Sbjct: 59 RGINPNNAEALPGKCGVNIPY-KISTSTNCNSI 90
>pdb|3UXF|A Chain A, Structure Of The Fimbrial Protein Fimp From Actonomyces
Oris
Length = 488
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%)
Query: 4 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVG 63
L+ D D L+ L+G+ + A + QKI+ GA A+ D T + L S
Sbjct: 84 LNVDLTTYDGWKTLADLKGDVVKAGALKSTTVQKITTGANGLASFTDAQTEVGAYLVSET 143
Query: 64 PYDKNLIPLIPQKCGIPLTLPPIDAK 89
+IP +P+T P AK
Sbjct: 144 RTPDKVIPAEDFVVTLPMTNPQDTAK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,714,364
Number of Sequences: 62578
Number of extensions: 85750
Number of successful extensions: 147
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 11
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)