Query 039541
Match_columns 521
No_of_seqs 434 out of 1989
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 18:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2E-42 6.7E-47 349.9 26.5 427 38-513 7-480 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.9E-38 1.3E-42 314.8 30.8 395 39-497 24-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.4E-35 4.8E-40 295.1 29.0 367 39-491 22-427 (438)
4 2gfp_A EMRD, multidrug resista 100.0 4.7E-33 1.6E-37 270.9 11.8 339 46-471 3-349 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3.7E-31 1.3E-35 267.2 19.5 380 106-496 47-471 (491)
6 2cfq_A Lactose permease; trans 100.0 7.9E-28 2.7E-32 237.1 19.8 354 103-501 33-405 (417)
7 2xut_A Proton/peptide symporte 99.9 2.6E-27 8.8E-32 241.0 15.7 146 103-254 38-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2.3E-12 7.9E-17 127.9 16.1 145 105-255 280-431 (451)
9 2cfq_A Lactose permease; trans 99.4 1.4E-12 4.8E-17 128.0 9.6 142 119-262 261-404 (417)
10 3o7q_A L-fucose-proton symport 99.3 7.2E-11 2.5E-15 116.6 18.4 126 343-470 44-175 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.3 1.7E-10 6E-15 115.7 18.2 138 355-494 49-194 (491)
12 2gfp_A EMRD, multidrug resista 99.2 8.1E-11 2.8E-15 113.7 15.1 161 339-501 14-180 (375)
13 2xut_A Proton/peptide symporte 99.1 1.7E-09 5.6E-14 109.5 17.3 134 360-495 57-197 (524)
14 4gc0_A D-xylose-proton symport 99.0 5.4E-10 1.8E-14 112.1 7.7 154 102-262 301-467 (491)
15 2g9p_A Antimicrobial peptide l 33.4 6.4 0.00022 19.2 -0.5 14 136-151 2-15 (26)
16 3b9w_A Ammonium transporter fa 26.4 4E+02 0.014 24.9 15.5 10 134-143 92-101 (407)
17 1ixt_A Spasmodic protein TX9A- 23.9 37 0.0013 17.0 1.3 16 73-88 2-17 (27)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2e-42 Score=349.85 Aligned_cols=427 Identities=17% Similarity=0.214 Sum_probs=309.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc--
Q 039541 38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS-- 115 (521)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 115 (521)
.++.+.+.++.+++.++.++|...++.. +|.+.++++.+.+..
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~-----------------------------------~~~~~~~~~~~~~~~~~ 51 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGT-----------------------------------VESLNTVFVAPQNLSES 51 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGT-----------------------------------HHHHHHHHTGGGCCCHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhcCCCCCCcc
Confidence 3567777778889999999999999888 788888775433211
Q ss_pred --cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh------------------ccccHHHH
Q 039541 116 --SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI------------------FANNIWIY 175 (521)
Q Consensus 116 --~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l 175 (521)
+.+.|++.+++.+|..+|++++|+++|| +|||++++++.+++.+++++++ +++|++++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr--~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNR--FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 2456899999999999999999999999 9999999999999999999998 47899999
Q ss_pred HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCchhHHHHHHHHH
Q 039541 176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---------RGSSWKMLYVWTSIP 246 (521)
Q Consensus 176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---------~~~~wr~~f~~~~~~ 246 (521)
+++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++... ...+||+.+.+..++
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998885443 234688888888888
Q ss_pred HHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHH
Q 039541 247 SIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKW 326 (521)
Q Consensus 247 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (521)
.++.. +..+++||||+|+..+++.+++++.+++... .+...++. .+.++.....+........++.+.
T Consensus 210 ~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 277 (491)
T 4gc0_A 210 ALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMG-NTLATQAV----------QEIKHSLDHGRKTGGRLLMFGVGV 277 (491)
T ss_dssp HHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHTTHHHHSCCTH
T ss_pred hhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcC-CchhHHHH----------HHHHHHHHhhhhhhhHHHHhcccH
Confidence 88777 7778899999999999999999888877643 21110000 000000000001112233344443
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHHhhccCCCcc---HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541 327 ALRRLLTIMALA-FGIGVVYFGLLLGVGNLSFN---IYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA 402 (521)
Q Consensus 327 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~ 402 (521)
.........+.. .+.....++.+...+..+.+ ........++..+++.++++++.||+|||+.+..+...+.++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHH
Confidence 333332222222 23344444455555544433 23344566678889999999999999999999988888887776
Q ss_pred HHHhc--CCchHHHHHHHHHHHHHHHH-HHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--------
Q 039541 403 ICVAI--GDEQEVLQIGLELASFFSAC-VAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-------- 471 (521)
Q Consensus 403 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-------- 471 (521)
.+... .....+...+..++...+.+ ...++.+.+.+|++|++.|+++.|+.+..++++++++|.+....
T Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~ 437 (491)
T 4gc0_A 358 SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA 437 (491)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65433 22221233333333333322 23467889999999999999999999999999998887765431
Q ss_pred ccchhHHHHHHHHHHHHHhHh-hhccccCCCCCCCcchHhhhc
Q 039541 472 RQNEFLSFGVFGLVVFCFGFF-VVFLPETIGVTLCDTLDQQEY 513 (521)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 513 (521)
..+....|.+++++++++.++ ++++||||+|++||.++-.|+
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 123455677777777776654 578899999999887655444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.9e-38 Score=314.82 Aligned_cols=395 Identities=9% Similarity=-0.007 Sum_probs=307.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcccc
Q 039541 39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSIL 118 (521)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 118 (521)
+.+|..+..++++.+...++.....+. +|.+.+++ .+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~-~s~~~~--- 64 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALA-----------------------------------MPYLVEQG-FSRGDL--- 64 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHH-----------------------------------HHHTTSST-TCSSCH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHh-ccHhHH---
Confidence 456778888888999999998888888 89999999 988777
Q ss_pred chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHhhccchhhHhhhh
Q 039541 119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF----ANNIWIYSTIRFVAGFFRAPIMTSVI 194 (521)
Q Consensus 119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~ 194 (521)
|++.+++.++..++++++|+++|| +|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...
T Consensus 65 -g~~~~~~~~~~~~~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 141 (451)
T 1pw4_A 65 -GFALSGISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 141 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHHh--cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHH
Confidence 999999999999999999999999 99999999999999999999999 99999999999999999999999999
Q ss_pred hheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHH
Q 039541 195 VLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA 272 (521)
Q Consensus 195 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 272 (521)
+++.|++|+++|++++++.+.+..+|.+++|.+ +.+.+..+ ||+.|++.+++.++..++.++++||+|+....+.+.
T Consensus 142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (451)
T 1pw4_A 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE- 220 (451)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-
T ss_pred HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-
Confidence 999999999999999999999999999999999 56677778 999999999888887767777889887531110000
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 039541 273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV 352 (521)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (521)
+.....+ ++. +++++++........+++++++.++...+..++..+.........|.++
T Consensus 221 ------------------~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 221 ------------------EYKNDYP-DDY--NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp ------------------TTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred ------------------hhccccc-ccc--hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 0000000000111257788899887777766666666655555667666
Q ss_pred cC-CCccHHH---HHHHHHHHhHhHHHHHHHHHhhc--CCchHHHHHHHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541 353 GN-LSFNIYL---SLAFNGLLDIPAYLLTFILIERW--SRKSSILTFCILSG-TCSAICVAIGDEQEVLQIGLELASFFS 425 (521)
Q Consensus 353 ~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (521)
++ .+.+... ......++.+++.++.+++.||+ +||+.+..+..+.. ++++++.+.+..+.+...+..++.+++
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 66 6666543 34555677889999999999999 99998888777666 555555554332335566677778888
Q ss_pred HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh-hhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhccc
Q 039541 426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL-GAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFLP 497 (521)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (521)
.+...+....+..|.+|++.|+++.|+.+....+ |..++|.+.+. ...++...|.+.+++.+++.++.+.++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999 99999999986 334677788888887777766655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.4e-35 Score=295.08 Aligned_cols=367 Identities=11% Similarity=0.048 Sum_probs=282.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcccc
Q 039541 39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSIL 118 (521)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 118 (521)
+.++..+.++++..+..+++.....+. .|.+.+++|++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~g~s~~~~--- 63 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-----------------------------------LPQFQQAFTLTNFQA--- 63 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHSCCCSHHH---
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-----------------------------------HHHHHHHcCCCHHHH---
Confidence 344556667777788888888888888 899999999999666
Q ss_pred chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHhhccchhhHhhhhh
Q 039541 119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT---IFANNIWIYSTIRFVAGFFRAPIMTSVIV 195 (521)
Q Consensus 119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 195 (521)
|++.+++.++..++++++|+++|| +|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+
T Consensus 64 -g~~~~~~~~~~~i~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 140 (438)
T 3o7q_A 64 -GLIQSAFYFGYFIIPIPAGILMKK--LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP 140 (438)
T ss_dssp -HHHHHHHHHHHHTTHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHHH--hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 999999999999999999999999 999999999999999999999 88999999999999999999999999999
Q ss_pred heeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhh-cCCc-------------------------hhHHHHHHHHHHH
Q 039541 196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLS-RGSS-------------------------WKMLYVWTSIPSI 248 (521)
Q Consensus 196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~-~~~~-------------------------wr~~f~~~~~~~~ 248 (521)
++.|++|+++|++++++.+.+..+|.+++|.+ +.+. ...+ ||+.|++.+++.+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 220 (438)
T 3o7q_A 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL 220 (438)
T ss_dssp HHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5555 4444 9999988877766
Q ss_pred HHHhhhce-eeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHH
Q 039541 249 VCCIIIYP-FISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWA 327 (521)
Q Consensus 249 ~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (521)
+..++.++ ..||+++. . + +++++.+.+.++++++++|.+
T Consensus 221 ~~~~~~~~~~~p~~~~~--------------------~--~------------------~~~~~~~~~~~~~~~~~~~~~ 260 (438)
T 3o7q_A 221 LVALLIMLTKFPALQSD--------------------N--H------------------SDAKQGSFSASLSRLARIRHW 260 (438)
T ss_dssp HHHHHHHHCCCCCCTTT--------------------C--C------------------CCSSTTSHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHcCCccccc--------------------c--c------------------ccccccchhhhHHHHHhChHH
Confidence 66533322 23443310 0 0 000111122467889999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-ccCC-CccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541 328 LRRLLTIMALAFGIGVVYFGLLLG-VGNL-SFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA 402 (521)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~ 402 (521)
+...+..+.............+.+ +++. +.+.. .......++.+++.++.+++.||++||+.+..+.++..++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 777666665555554444444444 4443 65543 334455677888999999999999999999999988888877
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccc-hhHHH
Q 039541 403 ICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQN-EFLSF 479 (521)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~-~~~~~ 479 (521)
++.+.+.. ...+..++.+++.+..++..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.|.. ..+ +...|
T Consensus 341 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~ 415 (438)
T 3o7q_A 341 ISAFAGGH---VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE 415 (438)
T ss_dssp HHHHCCHH---HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGG
T ss_pred HHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 76665433 3344557777888888899999999999977 788888877 6779999999999862 223 55666
Q ss_pred HHHHHHHHHHhH
Q 039541 480 GVFGLVVFCFGF 491 (521)
Q Consensus 480 ~~~~~~~~~~~~ 491 (521)
.+.+++.++..+
T Consensus 416 ~~~~~~~~~~~~ 427 (438)
T 3o7q_A 416 LIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655554444333
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=4.7e-33 Score=270.91 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhhHHH
Q 039541 46 ILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSC 125 (521)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~ 125 (521)
.++++..+...++.....+. +|.+.+++|.+.++. +++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~g~s~~~~----g~~~~~ 43 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPA-----------------------------------IADMARDLNVREGAV----QSVMGA 43 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHTTSSSTTHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh-----------------------------------hHHHHHHcCCCHHHH----HHHHHH
Confidence 45566777777888878888 889999999998666 999999
Q ss_pred HHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcc
Q 039541 126 FFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRW 205 (521)
Q Consensus 126 ~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 205 (521)
+.++..++++++|+++|| +|||++++.+.++.+++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++
T Consensus 44 ~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 121 (375)
T 2gfp_A 44 YLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 121 (375)
T ss_dssp HHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhh
Q 039541 206 RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASR 284 (521)
Q Consensus 206 rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 284 (521)
|++++++.+.+..+|.+++|.+ +.+.+..+||+.|++.+++.++..+..++.+||+++..
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 182 (375)
T 2gfp_A 122 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD------------------- 182 (375)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT-------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC-------------------
Confidence 9999999999999999999999 56666679999999999988888755777788865310
Q ss_pred cCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-CCccHHHHH
Q 039541 285 SNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-LSFNIYLSL 363 (521)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 363 (521)
+ ++ ++.+.++++++++|.++...+................|.+.++ .+.+.....
T Consensus 183 ~-~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 238 (375)
T 2gfp_A 183 A-PR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS 238 (375)
T ss_dssp C-CC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred c-cc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 0 00 0011245677888887776666666555555555555666554 455443333
Q ss_pred ---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHH-HHHHHH--HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541 364 ---AFNGLLDIPAYLLTFILIERWSRKSSILTFCIL-SGTCSA--ICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFG 437 (521)
Q Consensus 364 ---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~-~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (521)
....++.+++.++.+++.||++++ ...+... ...+.. ........+.+...+..++.+++.+...+....+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 316 (375)
T 2gfp_A 239 ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGA 316 (375)
T ss_dssp HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334566677777888888887762 2222222 222211 11111111224455667777888888888999999
Q ss_pred ccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541 438 TELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG 471 (521)
Q Consensus 438 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~ 471 (521)
.|.+| +.|+++.|+.+....+|..++|.+.+..
T Consensus 317 ~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 317 MEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8899999999999999999999888763
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.7e-31 Score=267.19 Aligned_cols=380 Identities=12% Similarity=0.060 Sum_probs=245.5
Q ss_pred eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc
Q 039541 106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGF 184 (521)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 184 (521)
+|+|++.++. +++.+.+.++..++++++|+++|| + |||+++.++.++.+++.+++++++|++.++++|+++|+
T Consensus 47 ~~~~~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 120 (491)
T 4aps_A 47 GDLHITRATA----ASIMAIYASMVYLSGTIGGFVADR--IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIII 120 (491)
T ss_dssp TSCCSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHH
T ss_pred hhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3499998666 999999999999999999999999 8 99999999999999999999999999999999999999
Q ss_pred cchhhHhhhhhheeeeecCcc--hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541 185 FRAPIMTSVIVLLSEMVSKRW--RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISES 261 (521)
Q Consensus 185 ~~g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 261 (521)
+.+...+...+++.|++|+++ |+.++++++.+.++|.+++|.+ +.+.+..+||+.|++.++..++..++.++..|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 121 GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999988 7788888999999999999998 6677778999999998877776663333322221
Q ss_pred hh----HHHhcCCHHHHHHHHHH--------------HhhhcCCCCCCCccccccCCC--CC----ccccCCCccccccc
Q 039541 262 PR----WLFIHGHEAEAMAVLKR--------------LASRSNYQSDYGLESCCLSNM--PP----KAKNVIPKLDLYSS 317 (521)
Q Consensus 262 p~----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~ 317 (521)
.+ ....+.+.++.++..+. ... .+.. +........... .. .....++.. ..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 275 (491)
T 4aps_A 201 LDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWN-SLPAYINLLTIVAIAIPVFYFAWMISSVK---VT 275 (491)
T ss_dssp CCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSC-CTTHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCc-ccccchhhhhHHHHHHHHHHHHHHhhccc---cc
Confidence 10 00001122222222221 000 0000 000000000000 00 000000000 00
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-CCc---cHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHH--
Q 039541 318 LKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-LSF---NIYLSLAFNGLLDIPAYLLTFILIERWSRKSSIL-- 391 (521)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-- 391 (521)
..+..+....+...+.....+..........+.+.++ .+. ..........+..+++.++.+++.||++||+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~ 355 (491)
T 4aps_A 276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPT 355 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchH
Confidence 0000011111112222222222222112222222222 222 2333345556677778889999999999986544
Q ss_pred ---HHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhh
Q 039541 392 ---TFCILSGTCSAICVAIG-------DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGA 461 (521)
Q Consensus 392 ---~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 461 (521)
.+..+.+++++++.... ..+.++..+..++.+++.+...+..+.++.|.+|++.|+++.|+.+....+|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555421 11225566677778888877788889999999999999999999999999999
Q ss_pred hHHHHHHHhh-ccchhHHHHHHHHHHHHHhHhhhcc
Q 039541 462 AFSPVLISAG-RQNEFLSFGVFGLVVFCFGFFVVFL 496 (521)
Q Consensus 462 ~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (521)
+++|.+.+.. +.++...|.+++++.+++.+..+..
T Consensus 436 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 436 ALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999863 3456667777777776666554433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=7.9e-28 Score=237.10 Aligned_cols=354 Identities=13% Similarity=0.055 Sum_probs=227.7
Q ss_pred ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHH---HHhccccHH-HHHHH
Q 039541 103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITAL---ATIFANNIW-IYSTI 178 (521)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~---~~~~~~~~~-~l~~~ 178 (521)
.+++++|++..+. |++.+.+.++..++++++|+++|| +|||++++++..+.+++.. ...+++... .++.+
T Consensus 33 ~l~~~~g~s~~~~----g~~~~~~~~~~~i~~~~~G~lsDr--~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 33 WLHDINHISKSDT----GIIFAAISLFSLLFQPLFGLLSDK--LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp HHHTTTCCCTTTS----HHHHHHHHHHHHHHHHHHHHHHTT--STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHhCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999777 999999999999999999999999 9999999998887765322 122322221 24566
Q ss_pred HHHhhccchhhHhhhhhheeeeecC--cchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541 179 RFVAGFFRAPIMTSVIVLLSEMVSK--RWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY 255 (521)
Q Consensus 179 r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 255 (521)
+++.|++.|...+.....+.++.++ ++|+...+....+..+|..++|.+ +++.+ .+||+.|++.++..++.. +..
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~-~~~ 184 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILA-VLL 184 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHH-HHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH-HHH
Confidence 7777777766665555555555543 356777788877888899999988 44444 589999998877765555 333
Q ss_pred eeee-cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541 256 PFIS-ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI 334 (521)
Q Consensus 256 ~~~~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (521)
++.+ |+|+. .+ .. + . + + + ++++....++++++++|.++...+..
T Consensus 185 ~~~~~~~~~~----~~--------------~~-~------~---~----~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T 2cfq_A 185 FFAKTDAPSS----AT--------------VA-N------A---V----G--A-NHSAFSLKLALELFRQPKLWFLSLYV 229 (417)
T ss_dssp CSSCCCCSCS----SC--------------SS-S------S---S----S--S-CCCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCcccccc----cc--------------cc-c------c---c----c--c-ccccccHHHHHHHhcCCchhhHHHHH
Confidence 4443 33210 00 00 0 0 0 0 0 00001112456788888876555443
Q ss_pred HHHHHHHHHHHHhHHhhccC-CC---ccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc
Q 039541 335 MALAFGIGVVYFGLLLGVGN-LS---FNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI 407 (521)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~-~~---~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~ 407 (521)
+.............|.++.+ .+ .+. .....+..++.+++.++.+++.||+|||+.+..+..+.++..+.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322222211112322221 11 111 222334446677889999999999999999888888877776665544
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHH-HHhhhhhhhHHHHHHHhh--ccchhHHHHHHHH
Q 039541 408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLV-RQAVNLGAAFSPVLISAG--RQNEFLSFGVFGL 484 (521)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~ 484 (521)
.+. +...+..++.+++.+...+..+.+..|.+|++.|+++.++. +....+|++++|.+.|+. ..++...|.+.++
T Consensus 310 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 310 TSA--LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp CSH--HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 332 34444555556666666667788999999999999999984 778889999999999863 2345667777777
Q ss_pred HHHHHhHhh-hccccCCC
Q 039541 485 VVFCFGFFV-VFLPETIG 501 (521)
Q Consensus 485 ~~~~~~~~~-~~~~~~~~ 501 (521)
+.+++.+.. +..+|+++
T Consensus 388 ~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 388 VALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHhhhcCCCc
Confidence 777766654 34454433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=2.6e-27 Score=241.03 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=131.9
Q ss_pred ceeeecc------eeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccc-cHHH
Q 039541 103 TIISDWS------LECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFAN-NIWI 174 (521)
Q Consensus 103 ~i~~~~~------~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~ 174 (521)
.+.+++| ++..+. +++.+++.++..++++++|+++|| + |||+++.++.++.+++.++.++++ +++.
T Consensus 38 ~l~~~~~~~~~~~~s~~~~----g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVA----KDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTH----HHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhccccccccCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 4566777 888776 999999999999999999999999 9 999999999999999999999999 9999
Q ss_pred HHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHH---HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHH
Q 039541 175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVII---GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVC 250 (521)
Q Consensus 175 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~ 250 (521)
++++|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+ +.+.+..+||+.|++.+++.++.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877666 889999999999998 67777789999999988887766
Q ss_pred Hhhh
Q 039541 251 CIII 254 (521)
Q Consensus 251 ~~~~ 254 (521)
.++.
T Consensus 192 ~~~~ 195 (524)
T 2xut_A 192 TVFF 195 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=2.3e-12 Score=127.89 Aligned_cols=145 Identities=15% Similarity=0.104 Sum_probs=126.3
Q ss_pred eeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC--CchHHHHHHHHHHH-HHHHHHhcc--ccHHHHHHHH
Q 039541 105 ISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL--GRKKLLFLSCFAMS-ITALATIFA--NNIWIYSTIR 179 (521)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r 179 (521)
++.+|.+..+. +++.+...++..++.++.|++.|| + |||+.+..+..+.. ++.++..+. .+.+.+.+.-
T Consensus 280 ~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (451)
T 1pw4_A 280 KEVKHFALDKS----SWAYFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 353 (451)
T ss_dssp TTBSCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred HHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 34488888555 999999999999999999999999 9 99999988877776 777777766 4788888889
Q ss_pred HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHH-HHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541 180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSF-GLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY 255 (521)
Q Consensus 180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 255 (521)
++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+ +.+.+..||+..|++.+++.++..++.+
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999999999999999 99999988 7888888999999998888877774433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=1.4e-12 Score=128.02 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=121.7
Q ss_pred chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541 119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS 198 (521)
Q Consensus 119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 198 (521)
.++..+...++..++.++.|+++|| +|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINR--IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888889999999999999 99999999999998888888888888888888888888887777777888999
Q ss_pred eeecCcchhHHHHH-HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541 199 EMVSKRWRGQVVII-GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP 262 (521)
Q Consensus 199 ~~~~~~~rg~~~~~-~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 262 (521)
|.+|++.|+++.++ ++....+|.+++|.+ |.+.+..|++..|.+.+++.++..++.++..||.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999998 478888999999988 67777778999999988888877755566667654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.30 E-value=7.2e-11 Score=116.61 Aligned_cols=126 Identities=14% Similarity=-0.038 Sum_probs=104.3
Q ss_pred HHHHhHHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH---HhcCCchHHHHH
Q 039541 343 VVYFGLLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAIC---VAIGDEQEVLQI 416 (521)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~ 416 (521)
......|.+.++++.+.... .....++..++.++.|+++||+|||+.+.++.++.+++.++. ...++. +..+
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~ 121 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNY--TLFL 121 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccH--HHHH
Confidence 33344566667777654433 345556777899999999999999999999999999998887 554444 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541 417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA 470 (521)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~ 470 (521)
+..++.|++.+...+...+++.|.+|++.|+.+.++.+....+|..++|.+.+.
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999998875
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.25 E-value=1.7e-10 Score=115.70 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=111.4
Q ss_pred CCccHHH---HHHHHHHHhHhHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 039541 355 LSFNIYL---SLAFNGLLDIPAYLLTFILIER-WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAF 430 (521)
Q Consensus 355 ~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (521)
.+.+... ......++..++.++.|+++|| +|||+++..+.++.+++.++..+..+. +...+..++.|++.+...
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA--SALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST--THHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHhcc
Confidence 5655443 3345567778899999999999 899999999999999998888776554 567777888899999999
Q ss_pred HHHHHhhccccCchh--hhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhh
Q 039541 431 NVLLVFGTELFTTCV--RNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVV 494 (521)
Q Consensus 431 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 494 (521)
+...+++.|.+|++. |+.+.++.+....+|..++|.+.+. ...++...|.+.++..+++.+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 7788888889999999999999986 335677777777766666555543
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.25 E-value=8.1e-11 Score=113.68 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=123.9
Q ss_pred HHHHHHHHhHHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541 339 FGIGVVYFGLLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ 415 (521)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 415 (521)
+.........|.+.++.+.+.... .....++..++.++.|+++||+|||+.+..+..+..++.+...+.++. +..
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~l 91 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL--TVL 91 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH--HHH
Confidence 333444444566777777665443 344556777889999999999999999999999999988887775433 667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc--cchhHHHHHHHHHHHHHhH-h
Q 039541 416 IGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR--QNEFLSFGVFGLVVFCFGF-F 492 (521)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~-~ 492 (521)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+... .++...+.+.++..++..+ .
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999999999999999999999999999998743 2566667767766666555 3
Q ss_pred hhccccCCC
Q 039541 493 VVFLPETIG 501 (521)
Q Consensus 493 ~~~~~~~~~ 501 (521)
.+.+||+++
T Consensus 172 ~~~~~~~~~ 180 (375)
T 2gfp_A 172 ARWMPETRP 180 (375)
T ss_dssp CCSSCCCST
T ss_pred HHHCcccCC
Confidence 455666543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.10 E-value=1.7e-09 Score=109.53 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541 360 YLSLAFNGLLDIPAYLLTFILIERW-SRKSSILTFCILSGTCSAICVAIG-DEQEVLQIGLELASFFSACVAFNVLLVFG 437 (521)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (521)
........++..++.++.|+++||+ |||+++.++.++.+++.++..+.. +. +..++..++.|++.+...+...+++
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~ 134 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV--QGFYTGLFLIALGSGGIKPLVSSFM 134 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHhccccchhHHHHH
Confidence 3444556677788999999999999 999999999999998888887765 43 5667777888999888899999999
Q ss_pred ccccCchhhhhhhHH---HHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhc
Q 039541 438 TELFTTCVRNSTTSL---VRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVF 495 (521)
Q Consensus 438 ~~~~~~~~r~~~~~~---~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 495 (521)
.|.+|++.|+++.+. .+....+|..++|.+.+.. ..++...|.+.+++.+++.+..+.
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876666 8888899999999988753 346777777777776665555443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.98 E-value=5.4e-10 Score=112.12 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=110.4
Q ss_pred cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-----ccHHHHH
Q 039541 102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-----NNIWIYS 176 (521)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~ 176 (521)
|.+.++.+.+..+. ........+...++.++.+++.|| +|||+.++.+....+++.+..+.. ++...++
T Consensus 301 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~dr--~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 301 PEVFKTLGASTDIA----LLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHSSCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHhcCCCccch----hhHHHHHHHHHHHHHHHHHHHHHh--hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 44555555555333 566667778888999999999999 999999999888888777665443 2222222
Q ss_pred H-HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHh------hcCCchhHHHHHHHHHHH
Q 039541 177 T-IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYL------SRGSSWKMLYVWTSIPSI 248 (521)
Q Consensus 177 ~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~------~~~~~wr~~f~~~~~~~~ 248 (521)
. .-+..+++.+ ..+....+.+|.+|.+.|++++++......+|.++++.+ ..+ ....++.+.|++.+++++
T Consensus 375 ~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 375 SMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 2222333332 446777899999999999999999998888888877655 222 223466778888888888
Q ss_pred HHHhhhceeeecch
Q 039541 249 VCCIIIYPFISESP 262 (521)
Q Consensus 249 ~~~~~~~~~~~esp 262 (521)
+..++.++++|||.
T Consensus 454 ~~~i~~~~~~PETk 467 (491)
T 4gc0_A 454 LAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHCCCCT
T ss_pred HHHHHHHheecCCC
Confidence 88878889999984
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.36 E-value=6.4 Score=19.21 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.8
Q ss_pred hhhhccccCCCCchHH
Q 039541 136 ALSTLGDSSSLGRKKL 151 (521)
Q Consensus 136 ~~g~l~dr~~~Grr~~ 151 (521)
++|.+..+ ||||.+
T Consensus 2 lfgklikk--fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK--FGRKAI 15 (26)
T ss_dssp HHHHHHHH--HTSHHH
T ss_pred cHHHHHHH--HhHHHH
Confidence 35778888 999865
No 16
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=26.44 E-value=4e+02 Score=24.91 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=4.4
Q ss_pred hhhhhhcccc
Q 039541 134 GLALSTLGDS 143 (521)
Q Consensus 134 ~~~~g~l~dr 143 (521)
.++.|-.++|
T Consensus 92 ~IvsGAvaeR 101 (407)
T 3b9w_A 92 LIAMGAVLGR 101 (407)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhhc
Confidence 3344444444
No 17
>1ixt_A Spasmodic protein TX9A-like protein; conotoxin, P-superfamily, ICK, inhibitory cystine knot, conus gloriamaris, GM9A, GM9.1; NMR {Synthetic} SCOP: g.3.6.1
Probab=23.90 E-value=37 Score=17.00 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=10.6
Q ss_pred ccCCcccccCCccccc
Q 039541 73 CINNTTTCSSSSDICT 88 (521)
Q Consensus 73 c~~~~~~~~~~~~~c~ 88 (521)
|.|+|.+......-|.
T Consensus 2 cnnscq~hs~c~shci 17 (27)
T 1ixt_A 2 CNNSCQSHSDCASHCI 17 (27)
T ss_dssp CCBCCSSSSCSSSSEE
T ss_pred ccchhhhhhhHhhcee
Confidence 5577777776666654
Done!