Query 039546
Match_columns 313
No_of_seqs 109 out of 119
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 10:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 1.1E-34 2.4E-39 292.1 28.9 204 103-309 27-247 (522)
2 PF05701 WEMBL: Weak chloropla 98.3 0.0015 3.3E-08 67.1 28.2 197 106-307 126-364 (522)
3 PF00261 Tropomyosin: Tropomyo 97.6 0.035 7.6E-07 51.4 22.3 54 104-157 2-55 (237)
4 PRK11637 AmiB activator; Provi 97.5 0.14 3.1E-06 51.0 26.4 55 105-159 49-103 (428)
5 PF12128 DUF3584: Protein of u 97.4 0.08 1.7E-06 59.5 26.6 55 256-311 748-802 (1201)
6 TIGR02169 SMC_prok_A chromosom 97.4 0.28 6.1E-06 53.1 29.8 40 115-154 292-331 (1164)
7 TIGR02168 SMC_prok_B chromosom 97.3 0.35 7.6E-06 52.0 29.9 36 106-141 673-708 (1179)
8 TIGR02169 SMC_prok_A chromosom 97.3 0.37 8E-06 52.2 29.4 17 107-123 262-278 (1164)
9 PF00038 Filament: Intermediat 97.2 0.18 4E-06 47.5 26.8 52 114-165 51-102 (312)
10 TIGR02168 SMC_prok_B chromosom 97.2 0.44 9.6E-06 51.3 29.9 30 104-133 678-707 (1179)
11 PF00038 Filament: Intermediat 97.1 0.26 5.6E-06 46.5 25.8 187 106-298 71-280 (312)
12 KOG0971 Microtubule-associated 97.1 0.69 1.5E-05 51.3 28.8 88 215-302 303-390 (1243)
13 PRK04778 septation ring format 97.0 0.39 8.5E-06 49.9 24.8 183 106-299 252-437 (569)
14 KOG0996 Structural maintenance 97.0 0.55 1.2E-05 53.0 26.4 114 188-301 472-591 (1293)
15 COG4372 Uncharacterized protei 96.9 0.62 1.3E-05 47.5 26.5 145 106-266 77-225 (499)
16 PRK02224 chromosome segregatio 96.9 0.9 1.9E-05 48.8 28.9 68 197-264 525-592 (880)
17 PF00261 Tropomyosin: Tropomyo 96.9 0.3 6.4E-06 45.3 20.2 180 112-300 3-189 (237)
18 KOG0994 Extracellular matrix g 96.8 0.58 1.3E-05 53.1 24.5 99 193-292 1596-1701(1758)
19 PRK11637 AmiB activator; Provi 96.7 0.82 1.8E-05 45.6 27.6 56 107-162 44-99 (428)
20 PRK02224 chromosome segregatio 96.6 1.3 2.9E-05 47.6 26.6 27 106-132 209-235 (880)
21 TIGR00606 rad50 rad50. This fa 96.6 1 2.2E-05 51.3 25.7 113 116-228 743-862 (1311)
22 KOG0996 Structural maintenance 96.3 1.8 4E-05 49.1 24.8 86 214-300 477-562 (1293)
23 TIGR02680 conserved hypothetic 96.3 3.1 6.7E-05 47.9 27.8 78 99-176 738-831 (1353)
24 KOG0161 Myosin class II heavy 96.2 3.2 7E-05 49.5 27.2 188 106-299 925-1144(1930)
25 COG1196 Smc Chromosome segrega 96.0 3.9 8.5E-05 46.1 29.7 59 104-162 668-726 (1163)
26 TIGR00606 rad50 rad50. This fa 95.8 4.9 0.00011 45.9 27.3 47 211-257 911-957 (1311)
27 PF10174 Cast: RIM-binding pro 95.8 3.1 6.6E-05 45.6 23.0 115 102-219 237-353 (775)
28 COG1196 Smc Chromosome segrega 95.6 5.1 0.00011 45.2 29.7 51 105-155 676-726 (1163)
29 KOG0994 Extracellular matrix g 95.6 2.1 4.6E-05 48.8 21.3 111 114-227 1560-1672(1758)
30 KOG0971 Microtubule-associated 95.5 5.3 0.00012 44.7 24.8 72 213-291 393-473 (1243)
31 PF12718 Tropomyosin_1: Tropom 95.4 0.62 1.3E-05 40.6 13.6 101 101-206 40-140 (143)
32 KOG1003 Actin filament-coating 95.3 2.6 5.7E-05 39.3 22.5 175 103-301 11-186 (205)
33 KOG0161 Myosin class II heavy 95.3 9.5 0.0002 45.8 28.0 128 106-238 904-1031(1930)
34 PF09730 BicD: Microtubule-ass 95.2 2.6 5.7E-05 45.8 20.1 127 102-230 252-387 (717)
35 PF06160 EzrA: Septation ring 95.1 5 0.00011 42.0 24.4 181 106-300 248-434 (560)
36 KOG4807 F-actin binding protei 95.0 4.1 9E-05 41.9 19.5 188 103-299 298-538 (593)
37 PF12128 DUF3584: Protein of u 94.9 8.9 0.00019 43.6 26.8 43 189-231 353-395 (1201)
38 PF07888 CALCOCO1: Calcium bin 94.7 6.7 0.00015 41.5 28.0 17 106-122 139-155 (546)
39 COG4942 Membrane-bound metallo 94.4 7.1 0.00015 40.1 28.3 58 104-161 53-110 (420)
40 PF07888 CALCOCO1: Calcium bin 94.3 8.6 0.00019 40.7 28.1 83 186-268 302-388 (546)
41 KOG4673 Transcription factor T 94.1 11 0.00023 41.3 24.7 159 106-275 342-519 (961)
42 TIGR01843 type_I_hlyD type I s 94.0 4.4 9.5E-05 39.0 16.9 32 194-225 209-240 (423)
43 COG1579 Zn-ribbon protein, pos 93.8 6.4 0.00014 37.5 22.4 31 127-157 20-50 (239)
44 PRK04863 mukB cell division pr 93.7 18 0.0004 42.5 28.3 60 106-166 317-376 (1486)
45 TIGR00998 8a0101 efflux pump m 93.5 6.9 0.00015 36.9 17.3 100 106-224 76-175 (334)
46 PF01576 Myosin_tail_1: Myosin 93.5 0.021 4.6E-07 62.1 0.0 187 102-300 38-228 (859)
47 KOG0977 Nuclear envelope prote 93.2 13 0.00029 39.3 20.8 126 118-265 93-218 (546)
48 PRK10476 multidrug resistance 93.1 7.9 0.00017 37.2 16.9 101 106-225 82-182 (346)
49 PF11570 E2R135: Coiled-coil r 92.7 1.8 3.9E-05 38.0 10.6 118 109-243 14-132 (136)
50 PF09726 Macoilin: Transmembra 92.7 18 0.00038 39.4 31.4 186 106-299 421-655 (697)
51 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.0 7 0.00015 33.2 19.7 36 203-238 53-88 (132)
52 PRK15136 multidrug efflux syst 91.9 8.2 0.00018 38.2 15.7 33 193-225 156-188 (390)
53 KOG1003 Actin filament-coating 91.8 5.4 0.00012 37.3 13.2 95 111-220 110-204 (205)
54 PRK10929 putative mechanosensi 91.7 29 0.00064 39.7 25.5 168 110-285 58-249 (1109)
55 PF12325 TMF_TATA_bd: TATA ele 91.5 8.2 0.00018 33.1 13.6 47 104-150 17-63 (120)
56 KOG4673 Transcription factor T 91.5 25 0.00055 38.7 21.7 152 136-297 344-512 (961)
57 PRK09039 hypothetical protein; 91.5 15 0.00033 36.2 21.4 38 191-228 119-156 (343)
58 COG1579 Zn-ribbon protein, pos 91.0 15 0.00033 35.1 23.0 40 191-230 92-131 (239)
59 PRK04863 mukB cell division pr 90.7 41 0.00089 39.7 28.9 42 192-233 366-407 (1486)
60 TIGR03007 pepcterm_ChnLen poly 90.6 21 0.00045 36.0 18.1 41 191-231 257-297 (498)
61 KOG0933 Structural maintenance 90.5 37 0.0008 38.8 23.9 28 106-133 680-707 (1174)
62 TIGR01843 type_I_hlyD type I s 90.3 18 0.00039 34.8 22.5 29 196-224 197-225 (423)
63 PF08581 Tup_N: Tup N-terminal 90.0 5.3 0.00011 32.0 10.0 68 218-299 6-76 (79)
64 PF04111 APG6: Autophagy prote 89.8 7.2 0.00016 38.1 12.9 60 106-165 12-77 (314)
65 KOG0250 DNA repair protein RAD 89.7 42 0.00091 38.3 27.6 106 193-298 314-426 (1074)
66 PF10168 Nup88: Nuclear pore c 89.6 35 0.00076 37.2 19.8 108 112-222 556-666 (717)
67 PHA02562 46 endonuclease subun 89.4 26 0.00057 35.5 26.6 58 210-271 300-357 (562)
68 PF04012 PspA_IM30: PspA/IM30 89.3 16 0.00035 33.0 19.2 118 106-233 26-143 (221)
69 PF14662 CCDC155: Coiled-coil 89.1 19 0.00042 33.5 22.8 54 104-157 9-62 (193)
70 KOG0250 DNA repair protein RAD 88.3 53 0.0011 37.6 26.2 25 106-130 231-255 (1074)
71 KOG4674 Uncharacterized conser 88.2 68 0.0015 38.7 23.0 163 106-272 69-238 (1822)
72 PRK09039 hypothetical protein; 88.0 29 0.00063 34.3 18.7 49 251-300 137-185 (343)
73 PRK10929 putative mechanosensi 87.7 59 0.0013 37.4 24.6 46 106-151 105-157 (1109)
74 PF10174 Cast: RIM-binding pro 87.6 50 0.0011 36.5 26.5 58 110-167 315-372 (775)
75 KOG0933 Structural maintenance 87.3 60 0.0013 37.2 24.3 51 247-298 416-466 (1174)
76 PF10481 CENP-F_N: Cenp-F N-te 87.3 28 0.00061 34.3 14.8 116 102-225 17-132 (307)
77 PRK10246 exonuclease subunit S 87.2 57 0.0012 36.8 21.1 21 281-301 861-881 (1047)
78 PRK03918 chromosome segregatio 86.9 49 0.0011 35.6 29.0 33 192-224 242-274 (880)
79 PRK04778 septation ring format 86.7 45 0.00097 35.0 23.2 57 104-160 276-339 (569)
80 KOG0977 Nuclear envelope prote 86.4 49 0.0011 35.2 21.1 65 103-167 148-212 (546)
81 PF14197 Cep57_CLD_2: Centroso 86.3 5.7 0.00012 30.9 7.8 56 209-271 12-67 (69)
82 PF15619 Lebercilin: Ciliary p 86.2 27 0.00059 32.1 23.5 107 191-297 71-188 (194)
83 KOG0612 Rho-associated, coiled 85.9 77 0.0017 36.9 25.8 44 110-153 487-530 (1317)
84 COG4942 Membrane-bound metallo 85.6 47 0.001 34.3 28.0 58 110-167 38-95 (420)
85 TIGR01005 eps_transp_fam exopo 85.3 57 0.0012 34.9 17.4 33 195-227 302-334 (754)
86 PF09789 DUF2353: Uncharacteri 85.2 26 0.00056 34.8 13.7 114 106-234 89-214 (319)
87 PF01576 Myosin_tail_1: Myosin 85.0 0.27 5.9E-06 53.7 0.0 52 106-157 288-347 (859)
88 PF08614 ATG16: Autophagy prot 84.9 12 0.00026 33.6 10.5 35 197-231 146-180 (194)
89 PRK11281 hypothetical protein; 84.7 82 0.0018 36.3 22.9 34 111-144 74-107 (1113)
90 KOG0963 Transcription factor/C 84.7 63 0.0014 34.9 24.1 89 214-304 254-348 (629)
91 PF07798 DUF1640: Protein of u 84.3 30 0.00064 30.8 14.5 21 280-300 131-151 (177)
92 KOG1103 Predicted coiled-coil 84.2 54 0.0012 33.7 18.7 92 109-211 85-190 (561)
93 PF10498 IFT57: Intra-flagella 84.1 33 0.00071 34.4 14.0 99 191-300 216-314 (359)
94 KOG0980 Actin-binding protein 84.0 81 0.0018 35.6 27.6 42 113-154 354-395 (980)
95 PF12001 DUF3496: Domain of un 83.6 6.2 0.00013 33.6 7.5 54 103-156 7-68 (111)
96 COG1566 EmrA Multidrug resista 82.9 55 0.0012 32.9 15.2 59 191-249 147-205 (352)
97 PF10473 CENP-F_leu_zip: Leuci 82.9 33 0.00071 30.3 15.6 40 191-230 27-66 (140)
98 PRK03598 putative efflux pump 82.9 45 0.00097 31.8 14.2 96 106-222 77-172 (331)
99 PF00769 ERM: Ezrin/radixin/mo 82.8 43 0.00094 31.6 16.5 49 106-154 8-56 (246)
100 PF09730 BicD: Microtubule-ass 82.8 81 0.0018 34.7 22.1 154 102-263 26-182 (717)
101 TIGR02971 heterocyst_DevB ABC 82.7 44 0.00095 31.6 18.2 28 192-219 132-159 (327)
102 PF05911 DUF869: Plant protein 82.7 84 0.0018 34.8 23.2 158 107-266 42-205 (769)
103 KOG4674 Uncharacterized conser 81.2 1.4E+02 0.003 36.3 25.6 35 193-227 1420-1454(1822)
104 KOG0964 Structural maintenance 81.0 1.1E+02 0.0024 35.1 24.3 175 119-301 309-495 (1200)
105 PF00769 ERM: Ezrin/radixin/mo 80.5 52 0.0011 31.1 16.6 49 115-163 3-51 (246)
106 smart00787 Spc7 Spc7 kinetocho 80.3 63 0.0014 31.8 17.6 35 191-225 182-220 (312)
107 KOG3156 Uncharacterized membra 79.6 24 0.00052 33.4 10.5 81 194-301 115-195 (220)
108 PRK01156 chromosome segregatio 79.5 1E+02 0.0022 33.7 29.1 30 105-134 471-500 (895)
109 PRK10884 SH3 domain-containing 79.0 32 0.0007 31.9 11.2 48 104-154 94-141 (206)
110 PF12325 TMF_TATA_bd: TATA ele 78.7 42 0.0009 28.8 12.1 45 249-301 66-110 (120)
111 PF08317 Spc7: Spc7 kinetochor 78.7 68 0.0015 31.2 21.0 10 284-293 255-264 (325)
112 PHA02562 46 endonuclease subun 78.2 82 0.0018 32.0 25.6 22 106-127 177-198 (562)
113 TIGR00634 recN DNA repair prot 78.2 92 0.002 32.5 18.1 47 136-182 159-205 (563)
114 KOG2077 JNK/SAPK-associated pr 78.2 17 0.00036 39.2 10.0 80 211-299 296-376 (832)
115 PRK11281 hypothetical protein; 77.4 1.5E+02 0.0031 34.4 24.8 55 102-156 127-181 (1113)
116 PRK10884 SH3 domain-containing 76.8 58 0.0013 30.2 12.2 14 256-269 137-150 (206)
117 PRK01156 chromosome segregatio 76.8 1.2E+02 0.0026 33.1 25.5 18 208-225 642-659 (895)
118 PF05557 MAD: Mitotic checkpoi 76.8 0.79 1.7E-05 48.9 0.0 29 282-310 283-311 (722)
119 KOG0612 Rho-associated, coiled 75.8 1.7E+02 0.0037 34.3 24.6 15 280-294 623-637 (1317)
120 PF10498 IFT57: Intra-flagella 75.7 93 0.002 31.3 17.5 130 120-295 216-350 (359)
121 PF06008 Laminin_I: Laminin Do 74.7 75 0.0016 29.7 23.9 156 104-272 46-206 (264)
122 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.7 52 0.0011 27.9 17.6 42 111-152 4-45 (132)
123 TIGR02977 phageshock_pspA phag 73.2 76 0.0016 29.1 15.6 99 196-304 39-137 (219)
124 PF05266 DUF724: Protein of un 72.7 78 0.0017 29.0 14.7 98 203-301 83-180 (190)
125 PRK11020 hypothetical protein; 72.5 28 0.0006 30.1 8.2 63 213-277 2-64 (118)
126 KOG4643 Uncharacterized coiled 72.4 1.9E+02 0.0041 33.4 20.5 29 101-129 168-196 (1195)
127 PRK12472 hypothetical protein; 72.1 1.3E+02 0.0028 31.9 14.4 95 107-221 208-302 (508)
128 PF04012 PspA_IM30: PspA/IM30 71.4 79 0.0017 28.6 15.6 99 195-296 37-135 (221)
129 PRK10698 phage shock protein P 71.2 89 0.0019 29.1 22.8 50 109-158 30-79 (222)
130 PF06818 Fez1: Fez1; InterPro 70.7 94 0.002 29.2 19.2 134 123-271 16-151 (202)
131 TIGR01005 eps_transp_fam exopo 70.6 1.6E+02 0.0034 31.7 19.8 12 146-157 202-213 (754)
132 PRK15030 multidrug efflux syst 69.7 31 0.00068 34.0 9.2 34 193-226 139-172 (397)
133 KOG0978 E3 ubiquitin ligase in 69.5 1.8E+02 0.004 32.0 23.4 23 280-302 601-623 (698)
134 TIGR03017 EpsF chain length de 69.4 1.2E+02 0.0026 29.9 17.5 163 104-302 179-357 (444)
135 PF12795 MscS_porin: Mechanose 68.9 97 0.0021 28.6 24.1 67 111-177 32-110 (240)
136 PF14662 CCDC155: Coiled-coil 68.9 1E+02 0.0022 28.8 18.2 96 194-296 73-177 (193)
137 KOG0980 Actin-binding protein 68.2 2.2E+02 0.0047 32.4 29.7 24 276-299 490-513 (980)
138 PF09726 Macoilin: Transmembra 68.2 1.9E+02 0.0041 31.7 21.7 39 249-295 543-581 (697)
139 PF13851 GAS: Growth-arrest sp 68.2 99 0.0021 28.4 17.6 50 188-237 143-199 (201)
140 TIGR01000 bacteriocin_acc bact 67.5 1.4E+02 0.0031 30.1 13.5 112 103-221 172-317 (457)
141 PF04111 APG6: Autophagy prote 66.8 1.3E+02 0.0029 29.4 14.2 47 105-151 45-91 (314)
142 PRK09578 periplasmic multidrug 66.7 38 0.00083 33.1 9.1 34 193-226 137-170 (385)
143 PF04849 HAP1_N: HAP1 N-termin 66.6 1.4E+02 0.0031 29.7 15.3 119 103-223 167-304 (306)
144 PF03962 Mnd1: Mnd1 family; I 66.5 1E+02 0.0022 28.0 12.0 88 199-298 66-153 (188)
145 PF12777 MT: Microtubule-bindi 66.3 52 0.0011 32.2 9.9 95 109-211 220-314 (344)
146 TIGR01069 mutS2 MutS2 family p 66.2 2.1E+02 0.0046 31.5 15.6 23 134-156 514-536 (771)
147 PF05483 SCP-1: Synaptonemal c 65.2 2.3E+02 0.0049 31.5 27.8 186 106-298 250-461 (786)
148 PF08826 DMPK_coil: DMPK coile 64.8 56 0.0012 25.1 7.7 45 107-151 15-59 (61)
149 PF09787 Golgin_A5: Golgin sub 64.4 1.8E+02 0.004 30.1 18.5 21 280-300 406-426 (511)
150 PF09789 DUF2353: Uncharacteri 64.1 1.6E+02 0.0035 29.4 20.8 132 146-302 87-225 (319)
151 PRK10698 phage shock protein P 63.6 1.3E+02 0.0028 28.0 15.6 92 200-301 43-134 (222)
152 PF05622 HOOK: HOOK protein; 63.5 2.3 5E-05 45.4 0.0 96 211-311 241-339 (713)
153 cd07656 F-BAR_srGAP The F-BAR 63.5 1.3E+02 0.0029 28.3 17.0 113 111-235 104-216 (241)
154 PF10473 CENP-F_leu_zip: Leuci 63.0 1.1E+02 0.0024 27.1 18.8 60 106-165 13-72 (140)
155 PF15070 GOLGA2L5: Putative go 62.8 2.3E+02 0.0049 30.7 21.0 56 215-270 166-221 (617)
156 PF09731 Mitofilin: Mitochondr 62.6 2E+02 0.0043 29.9 21.1 19 252-270 406-424 (582)
157 TIGR03545 conserved hypothetic 62.5 1E+02 0.0022 32.7 11.8 111 111-226 140-250 (555)
158 PRK09859 multidrug efflux syst 62.3 51 0.0011 32.3 9.0 33 194-226 136-168 (385)
159 COG4372 Uncharacterized protei 62.2 2E+02 0.0044 30.0 28.8 69 111-179 110-178 (499)
160 KOG0249 LAR-interacting protei 61.5 2.3E+02 0.0049 31.8 14.1 37 193-229 221-257 (916)
161 PRK10476 multidrug resistance 61.1 1.6E+02 0.0034 28.3 16.1 54 104-157 87-140 (346)
162 KOG4807 F-actin binding protei 60.7 2.2E+02 0.0048 29.8 15.1 54 193-246 339-393 (593)
163 COG4477 EzrA Negative regulato 60.2 2.5E+02 0.0054 30.3 23.4 181 106-300 251-437 (570)
164 PRK00409 recombination and DNA 59.7 2.8E+02 0.006 30.7 16.1 42 116-157 501-542 (782)
165 KOG0964 Structural maintenance 59.6 3.3E+02 0.0072 31.6 21.3 42 136-177 683-724 (1200)
166 PF06810 Phage_GP20: Phage min 59.4 1.2E+02 0.0025 26.9 9.9 13 114-126 24-36 (155)
167 PF15397 DUF4618: Domain of un 58.5 1.8E+02 0.004 28.2 23.0 153 110-297 63-217 (258)
168 PF05667 DUF812: Protein of un 58.1 2.7E+02 0.0058 30.0 22.6 49 106-154 331-379 (594)
169 KOG4302 Microtubule-associated 57.8 2.9E+02 0.0063 30.3 15.7 74 192-271 107-180 (660)
170 PF05557 MAD: Mitotic checkpoi 57.0 3.6 7.7E-05 44.0 0.0 46 249-296 228-273 (722)
171 KOG0976 Rho/Rac1-interacting s 56.2 3.6E+02 0.0078 30.9 23.8 113 107-234 103-215 (1265)
172 PF11802 CENP-K: Centromere-as 56.1 2E+02 0.0044 28.1 11.6 86 211-307 87-174 (268)
173 TIGR01069 mutS2 MutS2 family p 55.9 3E+02 0.0065 30.4 14.3 23 276-298 568-590 (771)
174 PF05622 HOOK: HOOK protein; 55.6 3.9 8.4E-05 43.8 0.0 69 197-269 313-381 (713)
175 PRK11546 zraP zinc resistance 55.4 91 0.002 27.7 8.5 64 191-271 46-109 (143)
176 PF12808 Mto2_bdg: Micro-tubul 55.3 48 0.001 24.8 5.8 25 276-300 25-49 (52)
177 PF15619 Lebercilin: Ciliary p 55.0 1.7E+02 0.0038 26.9 17.7 117 106-226 64-188 (194)
178 PLN03229 acetyl-coenzyme A car 53.5 3.6E+02 0.0079 30.1 17.8 99 103-205 429-545 (762)
179 PRK13729 conjugal transfer pil 53.5 60 0.0013 34.0 8.1 50 247-297 72-121 (475)
180 TIGR02680 conserved hypothetic 53.3 4.4E+02 0.0095 31.0 28.1 64 103-166 749-828 (1353)
181 PF09727 CortBP2: Cortactin-bi 53.0 2E+02 0.0043 26.9 14.5 77 104-180 82-162 (192)
182 PLN03229 acetyl-coenzyme A car 52.1 3.8E+02 0.0083 29.9 19.3 22 102-123 478-499 (762)
183 COG1842 PspA Phage shock prote 51.9 2.1E+02 0.0046 26.9 15.7 11 137-147 19-29 (225)
184 TIGR03185 DNA_S_dndD DNA sulfu 51.8 3.2E+02 0.007 29.0 25.0 72 107-180 180-251 (650)
185 PRK00409 recombination and DNA 51.6 3.7E+02 0.0081 29.7 14.5 33 195-227 502-534 (782)
186 cd07657 F-BAR_Fes_Fer The F-BA 51.5 2.1E+02 0.0046 26.9 14.5 91 115-234 103-193 (237)
187 TIGR02977 phageshock_pspA phag 50.8 2E+02 0.0044 26.4 21.9 110 107-233 28-137 (219)
188 KOG0804 Cytoplasmic Zn-finger 50.7 3.3E+02 0.0072 28.8 14.4 57 195-265 347-403 (493)
189 PHA03011 hypothetical protein; 50.2 1.3E+02 0.0027 25.9 8.1 52 216-267 64-115 (120)
190 KOG0976 Rho/Rac1-interacting s 49.9 4.5E+02 0.0098 30.1 24.2 30 132-161 331-360 (1265)
191 PF05483 SCP-1: Synaptonemal c 49.7 4.1E+02 0.0089 29.6 25.8 37 193-229 315-351 (786)
192 KOG1853 LIS1-interacting prote 49.4 2.8E+02 0.006 27.5 20.9 39 110-148 27-65 (333)
193 PF05529 Bap31: B-cell recepto 48.7 1.4E+02 0.0031 26.5 8.9 52 106-157 121-173 (192)
194 PF09728 Taxilin: Myosin-like 48.6 2.7E+02 0.0059 27.3 27.2 207 92-302 18-273 (309)
195 smart00787 Spc7 Spc7 kinetocho 48.5 2.8E+02 0.0061 27.3 21.0 30 196-225 205-234 (312)
196 PTZ00121 MAEBL; Provisional 47.8 6.1E+02 0.013 31.1 23.5 15 241-255 1319-1333(2084)
197 PF11559 ADIP: Afadin- and alp 47.7 1.8E+02 0.0039 24.9 14.9 43 251-297 108-150 (151)
198 PF09731 Mitofilin: Mitochondr 47.7 3.4E+02 0.0075 28.2 26.4 58 249-308 376-438 (582)
199 PRK11578 macrolide transporter 47.7 2.7E+02 0.0059 27.0 12.2 32 194-225 143-174 (370)
200 KOG1029 Endocytic adaptor prot 47.6 4.8E+02 0.01 29.8 19.6 35 124-158 430-464 (1118)
201 COG4913 Uncharacterized protei 47.4 4.8E+02 0.01 29.7 18.7 78 103-180 630-712 (1104)
202 cd07654 F-BAR_FCHSD The F-BAR 47.3 2.7E+02 0.0058 26.8 15.9 40 113-152 106-145 (264)
203 PRK11578 macrolide transporter 47.0 2.6E+02 0.0056 27.2 11.0 21 106-126 95-115 (370)
204 PRK11020 hypothetical protein; 46.9 63 0.0014 28.0 5.9 47 256-302 3-53 (118)
205 cd07652 F-BAR_Rgd1 The F-BAR ( 46.7 2.5E+02 0.0054 26.2 13.9 87 122-218 109-195 (234)
206 PF11559 ADIP: Afadin- and alp 46.4 1.9E+02 0.0041 24.7 16.5 75 124-227 52-126 (151)
207 COG2433 Uncharacterized conser 46.3 2.6E+02 0.0056 30.6 11.5 89 203-313 419-511 (652)
208 PRK11546 zraP zinc resistance 46.2 1.7E+02 0.0037 26.0 8.7 50 251-301 61-110 (143)
209 PRK03598 putative efflux pump 45.8 2.7E+02 0.0059 26.5 12.4 22 104-125 82-103 (331)
210 PF05615 THOC7: Tho complex su 45.6 1.9E+02 0.0041 24.5 10.8 51 122-172 72-122 (139)
211 KOG0018 Structural maintenance 45.5 5.6E+02 0.012 30.0 21.3 36 116-151 226-261 (1141)
212 PF06810 Phage_GP20: Phage min 45.4 2.2E+02 0.0047 25.2 10.0 36 117-152 13-48 (155)
213 KOG2891 Surface glycoprotein [ 45.1 3.3E+02 0.0072 27.4 11.3 88 223-311 334-421 (445)
214 COG4026 Uncharacterized protei 44.9 1.7E+02 0.0037 28.4 9.1 46 112-157 130-175 (290)
215 PF15294 Leu_zip: Leucine zipp 44.8 3.2E+02 0.0069 26.9 17.8 18 253-270 210-227 (278)
216 TIGR01730 RND_mfp RND family e 44.6 1.8E+02 0.0038 26.8 9.1 33 194-226 101-133 (322)
217 PRK06568 F0F1 ATP synthase sub 44.3 2.3E+02 0.005 25.2 14.8 100 191-296 24-131 (154)
218 PF07106 TBPIP: Tat binding pr 44.2 2.2E+02 0.0047 24.9 10.7 47 249-295 114-160 (169)
219 PF09486 HrpB7: Bacterial type 43.0 2.5E+02 0.0055 25.3 13.3 91 136-226 20-110 (158)
220 PF12761 End3: Actin cytoskele 43.0 2.7E+02 0.0059 26.0 9.9 61 162-223 135-195 (195)
221 PF15294 Leu_zip: Leucine zipp 42.9 3.4E+02 0.0074 26.7 17.4 48 105-152 127-174 (278)
222 PRK11556 multidrug efflux syst 41.9 1.7E+02 0.0036 29.3 9.1 33 194-226 162-194 (415)
223 PF13514 AAA_27: AAA domain 41.5 5.8E+02 0.013 29.0 27.5 120 105-228 152-275 (1111)
224 COG0419 SbcC ATPase involved i 41.0 5.4E+02 0.012 28.5 27.0 18 215-232 500-517 (908)
225 TIGR00634 recN DNA repair prot 41.0 4.4E+02 0.0096 27.5 23.3 46 106-151 157-202 (563)
226 smart00503 SynN Syntaxin N-ter 40.8 1.8E+02 0.0039 23.0 12.6 29 199-227 86-114 (117)
227 PF08606 Prp19: Prp19/Pso4-lik 40.7 1.9E+02 0.004 23.1 8.2 41 197-237 10-50 (70)
228 PF11570 E2R135: Coiled-coil r 40.0 2.7E+02 0.0059 24.8 11.6 48 109-156 7-54 (136)
229 PF04420 CHD5: CHD5-like prote 39.5 1E+02 0.0022 27.3 6.3 53 249-301 38-94 (161)
230 KOG0999 Microtubule-associated 39.3 5.6E+02 0.012 28.2 18.6 141 102-264 106-256 (772)
231 PF05103 DivIVA: DivIVA protei 38.3 23 0.00051 29.1 2.1 57 101-157 16-72 (131)
232 KOG1029 Endocytic adaptor prot 38.0 6.7E+02 0.014 28.7 26.6 70 162-232 440-509 (1118)
233 PF12795 MscS_porin: Mechanose 37.7 3.3E+02 0.0072 25.1 18.7 54 103-156 85-138 (240)
234 PF03962 Mnd1: Mnd1 family; I 37.6 90 0.0019 28.4 5.9 58 98-155 64-127 (188)
235 PRK10559 p-hydroxybenzoic acid 37.6 3.2E+02 0.0069 26.2 10.0 22 106-127 81-102 (310)
236 PF08317 Spc7: Spc7 kinetochor 37.2 4E+02 0.0087 25.9 21.0 31 195-225 209-239 (325)
237 PF05276 SH3BP5: SH3 domain-bi 36.9 3.8E+02 0.0083 25.6 23.9 158 111-271 15-211 (239)
238 PF13851 GAS: Growth-arrest sp 36.8 3.4E+02 0.0073 24.9 20.2 52 106-157 30-81 (201)
239 PF14193 DUF4315: Domain of un 36.7 1.3E+02 0.0029 24.3 6.1 23 135-157 5-27 (83)
240 PF05335 DUF745: Protein of un 36.3 3.5E+02 0.0076 25.0 18.5 26 197-222 146-171 (188)
241 PF05010 TACC: Transforming ac 35.1 3.8E+02 0.0083 25.1 20.8 112 122-244 67-178 (207)
242 PF04799 Fzo_mitofusin: fzo-li 34.9 1.2E+02 0.0026 27.8 6.2 84 219-310 74-157 (171)
243 PF06156 DUF972: Protein of un 34.8 2.1E+02 0.0045 24.0 7.2 50 103-152 8-57 (107)
244 PF09032 Siah-Interact_N: Siah 34.7 1E+02 0.0022 24.9 5.0 45 250-294 2-47 (79)
245 PRK15178 Vi polysaccharide exp 34.1 5.6E+02 0.012 26.7 13.5 17 140-156 225-241 (434)
246 PF12709 Kinetocho_Slk19: Cent 33.9 1.9E+02 0.004 23.9 6.5 41 264-304 40-80 (87)
247 PRK11556 multidrug efflux syst 33.8 3.6E+02 0.0079 27.0 10.0 27 106-132 121-147 (415)
248 PF10146 zf-C4H2: Zinc finger- 31.9 4.5E+02 0.0098 24.9 14.1 12 216-227 53-64 (230)
249 PRK10869 recombination and rep 31.8 6.3E+02 0.014 26.6 18.8 64 135-200 154-217 (553)
250 KOG0243 Kinesin-like protein [ 31.8 8.8E+02 0.019 28.2 22.1 81 100-180 445-525 (1041)
251 PRK10246 exonuclease subunit S 31.7 8.2E+02 0.018 27.9 25.7 25 147-171 252-276 (1047)
252 COG3524 KpsE Capsule polysacch 31.6 2.6E+02 0.0057 28.3 8.4 30 196-225 296-325 (372)
253 PF11365 DUF3166: Protein of u 31.4 97 0.0021 25.9 4.6 57 104-160 23-91 (96)
254 PF14817 HAUS5: HAUS augmin-li 31.3 7.3E+02 0.016 27.1 12.7 110 192-311 301-410 (632)
255 cd07653 F-BAR_CIP4-like The F- 31.2 4.1E+02 0.0089 24.3 15.8 22 214-235 173-194 (251)
256 PF07851 TMPIT: TMPIT-like pro 30.5 5.8E+02 0.012 25.7 11.0 83 214-296 2-84 (330)
257 TIGR03545 conserved hypothetic 30.4 2.9E+02 0.0063 29.4 9.0 35 192-226 237-272 (555)
258 PRK11677 hypothetical protein; 30.3 2.1E+02 0.0047 25.0 6.8 28 104-131 30-57 (134)
259 PF07795 DUF1635: Protein of u 30.0 2.2E+02 0.0047 27.1 7.2 46 106-151 15-60 (214)
260 TIGR00999 8a0102 Membrane Fusi 30.0 3E+02 0.0065 24.8 8.0 50 108-157 21-73 (265)
261 PF14257 DUF4349: Domain of un 29.9 2.7E+02 0.0058 25.9 7.9 49 248-302 136-184 (262)
262 KOG4360 Uncharacterized coiled 29.3 7.6E+02 0.017 26.7 13.7 35 189-223 269-303 (596)
263 PF06295 DUF1043: Protein of u 29.2 2.4E+02 0.0052 24.0 6.8 36 105-140 27-62 (128)
264 PF07106 TBPIP: Tat binding pr 29.1 3.9E+02 0.0084 23.3 10.6 29 106-134 75-103 (169)
265 PRK14475 F0F1 ATP synthase sub 29.1 3.9E+02 0.0085 23.4 14.1 37 253-292 97-133 (167)
266 cd07653 F-BAR_CIP4-like The F- 29.1 4.5E+02 0.0097 24.0 17.7 89 116-212 104-192 (251)
267 KOG2629 Peroxisomal membrane a 29.0 5.3E+02 0.011 25.8 9.8 39 255-301 158-196 (300)
268 PF09755 DUF2046: Uncharacteri 28.6 6.1E+02 0.013 25.4 21.3 20 249-268 183-202 (310)
269 cd07651 F-BAR_PombeCdc15_like 28.6 4.6E+02 0.01 24.0 16.8 28 193-227 162-189 (236)
270 PF05266 DUF724: Protein of un 28.5 4.7E+02 0.01 24.0 13.4 50 101-157 94-143 (190)
271 PF10481 CENP-F_N: Cenp-F N-te 28.5 6.1E+02 0.013 25.3 15.2 22 280-301 109-130 (307)
272 PRK14472 F0F1 ATP synthase sub 28.4 4.1E+02 0.0089 23.3 14.0 35 193-227 54-88 (175)
273 COG5509 Uncharacterized small 28.4 98 0.0021 24.2 3.8 28 248-275 29-56 (65)
274 PF02403 Seryl_tRNA_N: Seryl-t 28.2 3.1E+02 0.0068 21.9 7.8 31 204-234 24-54 (108)
275 KOG3433 Protein involved in me 28.2 3.1E+02 0.0067 25.8 7.7 57 96-159 74-130 (203)
276 PRK09578 periplasmic multidrug 28.0 5.3E+02 0.012 25.2 9.9 24 106-129 97-120 (385)
277 TIGR00999 8a0102 Membrane Fusi 27.9 1.9E+02 0.0041 26.1 6.3 33 193-225 52-84 (265)
278 PRK10559 p-hydroxybenzoic acid 27.9 4.6E+02 0.0099 25.2 9.3 32 194-225 121-152 (310)
279 PF03528 Rabaptin: Rabaptin; 27.8 2E+02 0.0044 24.4 6.0 66 115-180 33-104 (106)
280 COG1566 EmrA Multidrug resista 27.5 6.5E+02 0.014 25.4 14.2 26 107-132 88-113 (352)
281 PRK06342 transcription elongat 27.2 1.3E+02 0.0028 26.8 5.1 27 278-304 62-88 (160)
282 cd07647 F-BAR_PSTPIP The F-BAR 27.2 5E+02 0.011 24.0 17.2 27 131-157 99-125 (239)
283 PRK15030 multidrug efflux syst 27.1 5.6E+02 0.012 25.3 10.0 25 106-130 99-123 (397)
284 PRK10803 tol-pal system protei 27.0 2.2E+02 0.0049 27.0 6.9 45 105-156 56-100 (263)
285 COG0419 SbcC ATPase involved i 26.9 9.1E+02 0.02 26.8 26.7 21 280-300 719-739 (908)
286 KOG0972 Huntingtin interacting 26.9 6.8E+02 0.015 25.4 13.5 40 191-230 223-262 (384)
287 PRK08476 F0F1 ATP synthase sub 26.5 4.1E+02 0.0089 22.7 14.9 16 281-296 119-134 (141)
288 TIGR03185 DNA_S_dndD DNA sulfu 26.3 8.1E+02 0.018 26.1 24.8 41 104-144 210-250 (650)
289 COG1842 PspA Phage shock prote 26.3 5.6E+02 0.012 24.2 23.0 53 106-158 27-79 (225)
290 COG3883 Uncharacterized protei 26.2 6.3E+02 0.014 24.7 24.1 68 104-181 39-113 (265)
291 PF15463 ECM11: Extracellular 26.1 4.2E+02 0.0092 22.8 9.3 48 191-238 72-119 (139)
292 KOG0239 Kinesin (KAR3 subfamil 25.7 9.1E+02 0.02 26.5 18.1 193 105-313 109-316 (670)
293 PF07798 DUF1640: Protein of u 25.3 4.8E+02 0.01 23.1 16.8 25 190-214 42-66 (177)
294 PF13870 DUF4201: Domain of un 25.1 4.7E+02 0.01 22.9 12.8 47 248-302 81-127 (177)
295 PF02388 FemAB: FemAB family; 25.0 3E+02 0.0065 27.6 7.7 41 106-157 245-285 (406)
296 cd07676 F-BAR_FBP17 The F-BAR 24.8 6E+02 0.013 24.1 15.3 29 129-157 119-147 (253)
297 PRK05759 F0F1 ATP synthase sub 24.8 4.3E+02 0.0093 22.4 14.0 36 192-227 39-74 (156)
298 KOG0999 Microtubule-associated 24.7 9.7E+02 0.021 26.4 25.3 67 109-177 7-80 (772)
299 CHL00019 atpF ATP synthase CF0 24.6 5E+02 0.011 23.0 14.7 38 253-293 111-148 (184)
300 TIGR02971 heterocyst_DevB ABC 24.5 6E+02 0.013 24.0 17.9 17 110-126 55-71 (327)
301 PRK13455 F0F1 ATP synthase sub 24.2 5E+02 0.011 22.9 14.2 36 193-228 63-98 (184)
302 PF05010 TACC: Transforming ac 23.9 6E+02 0.013 23.8 26.4 33 193-225 81-113 (207)
303 PRK13169 DNA replication intia 23.5 4.1E+02 0.009 22.6 7.1 48 103-150 8-55 (110)
304 cd07678 F-BAR_FCHSD1 The F-BAR 23.4 6.9E+02 0.015 24.2 14.4 36 118-153 110-145 (263)
305 KOG0963 Transcription factor/C 23.2 1E+03 0.022 26.2 26.1 34 192-225 214-251 (629)
306 PF10146 zf-C4H2: Zinc finger- 23.1 6.5E+02 0.014 23.8 15.4 39 119-157 3-44 (230)
307 PF04420 CHD5: CHD5-like prote 23.1 3.1E+02 0.0067 24.2 6.6 58 206-272 37-94 (161)
308 PF15556 Zwint: ZW10 interacto 23.0 6.9E+02 0.015 24.1 14.5 52 121-172 74-125 (252)
309 PF15233 SYCE1: Synaptonemal c 22.5 5.5E+02 0.012 22.8 13.3 34 132-165 21-54 (134)
310 PF05667 DUF812: Protein of un 22.5 1E+03 0.022 25.8 25.4 52 106-157 324-375 (594)
311 KOG2180 Late Golgi protein sor 22.2 4.8E+02 0.01 29.2 8.9 75 207-292 34-112 (793)
312 KOG1853 LIS1-interacting prote 22.0 7.9E+02 0.017 24.4 16.1 19 208-226 163-181 (333)
313 PF00430 ATP-synt_B: ATP synth 22.0 4.3E+02 0.0093 21.4 11.2 94 187-292 29-122 (132)
314 PF06818 Fez1: Fez1; InterPro 21.9 6.7E+02 0.015 23.6 12.3 33 193-225 15-47 (202)
315 COG3096 MukB Uncharacterized p 21.7 1.3E+03 0.028 26.7 18.3 57 137-202 448-504 (1480)
316 KOG0804 Cytoplasmic Zn-finger 21.6 9.9E+02 0.022 25.4 15.9 40 193-232 394-433 (493)
317 KOG1962 B-cell receptor-associ 21.2 7.2E+02 0.016 23.6 9.0 18 209-226 151-168 (216)
318 PF05008 V-SNARE: Vesicle tran 20.9 3.7E+02 0.0081 20.2 6.0 52 104-155 26-78 (79)
319 TIGR02231 conserved hypothetic 20.8 9.3E+02 0.02 24.8 12.5 37 192-228 128-164 (525)
320 PF06428 Sec2p: GDP/GTP exchan 20.7 5E+02 0.011 21.6 9.3 56 118-180 2-58 (100)
321 PF06698 DUF1192: Protein of u 20.5 2.5E+02 0.0055 21.5 4.8 27 248-274 25-51 (59)
322 KOG0946 ER-Golgi vesicle-tethe 20.2 1.3E+03 0.029 26.4 18.6 193 104-304 693-893 (970)
323 KOG0244 Kinesin-like protein [ 20.2 6.7E+02 0.014 28.7 9.6 90 195-294 498-593 (913)
324 PRK13460 F0F1 ATP synthase sub 20.1 6E+02 0.013 22.3 14.8 38 253-293 103-140 (173)
325 PRK15396 murein lipoprotein; P 20.1 4.7E+02 0.01 21.0 6.9 13 136-148 58-70 (78)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=1.1e-34 Score=292.10 Aligned_cols=204 Identities=42% Similarity=0.530 Sum_probs=185.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG 182 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~ 182 (313)
.+..++++||+++|+||++||+||.++|.+|.+||+||+.|||+|++|++||+.++.++.+|++++|+++||+++|++|.
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~ 106 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGI 106 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhh
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 183 IEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTR 262 (313)
Q Consensus 183 ~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~ 262 (313)
++ ..++.|+.+|++++.||+.++++|++|++||+++|++|++++++|+.|++||++|+++++.|.++|++|+.||++
T Consensus 107 ~~---~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~ 183 (522)
T PF05701_consen 107 AE---EASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIA 183 (522)
T ss_pred cc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 456779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHhhhhhhh-----------------HHHHHHHHHHHHHHHHHHHhhhhHhHhhhhh
Q 039546 263 LKALLDSQRETESIKN-----------------RELVLKLEEEIDTLKEELEKSRTFGKKINGK 309 (313)
Q Consensus 263 lKe~Les~~~~e~~~~-----------------~e~~~~le~e~~~L~~el~ka~~~e~k~~~~ 309 (313)
||++|++.+....... -..+.+.+.++..|+.++..+++++.+|...
T Consensus 184 lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a 247 (522)
T PF05701_consen 184 LKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999865322100 0246777888999999999999999888753
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.25 E-value=0.0015 Score=67.05 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRV-------AEEANEKLQEALMAQKRAEENSEIEKFRAVEM 178 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~-------ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~El 178 (313)
...-..|+.+++||.+++..+..+-..|..++...+.+-+. +++|+..|...+.+-..+..+..-+.-.-..+
T Consensus 126 ~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~ 205 (522)
T PF05701_consen 126 ASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEI 205 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556799999999999999999999999999998887655 55555555554444443322221111111111
Q ss_pred HHhhhhhhhhhhHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------
Q 039546 179 EQAGIEASQKKEEEWQKEIEA-------VRNQHALD---VASLLSTTQELQRIKQELAMTTDAKNQA------------- 235 (313)
Q Consensus 179 Eq~~~~~a~~~~~a~k~ELE~-------ar~qha~~---~AeL~Sak~EL~klrqEl~~~~~ak~aA------------- 235 (313)
... -+..-..|+.+|+. .+.++... -..|..+..+|..|+.++......+...
T Consensus 206 ~~~----~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~ 281 (522)
T PF05701_consen 206 AAE----REQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQS 281 (522)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHH
Confidence 100 01112345555444 44444221 1457778888888888888877744443
Q ss_pred -hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546 236 -LSHADDATKIAELHV-----------EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFG 303 (313)
Q Consensus 236 -~~~AeeA~~aae~~~-----------eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e 303 (313)
+..+..=..-++.+- ..|+-|..||...|..|......+.... ..|..|+.++..++.+|+.+..-+
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~-~~v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEAS-SEVSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHhhHHHHHHHHHHHHHHHHhhh
Confidence 221111111111111 1244477777777777777776554333 568999999999999998888776
Q ss_pred Hhhh
Q 039546 304 KKIN 307 (313)
Q Consensus 304 ~k~~ 307 (313)
.+..
T Consensus 361 ~~~k 364 (522)
T PF05701_consen 361 EKAK 364 (522)
T ss_pred cchh
Confidence 6543
No 3
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.59 E-value=0.035 Score=51.40 Aligned_cols=54 Identities=31% Similarity=0.369 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
|+..++.+|+.+++.+..+...|..++....++-.|+..-.+.|..|...|+.+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ 55 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA 55 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 677889999999999999999999999999999999999988888886666655
No 4
>PRK11637 AmiB activator; Provisional
Probab=97.47 E-value=0.14 Score=50.97 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALM 159 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~ 159 (313)
..+++.+|...+++|...+.++...+..-..+..+|..+...|.++...|...+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ 103 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNK 103 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555444444433
No 5
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.44 E-value=0.08 Score=59.50 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHhHhhhhhcc
Q 039546 256 LSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS 311 (313)
Q Consensus 256 Lt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e~k~~~~e~ 311 (313)
...++..|+..++....+...-. ..|.+|+.+|..|..+|...+....+|.+-+.
T Consensus 748 ~~~~~~~le~~~~~eL~~~GvD~-~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~ 802 (1201)
T PF12128_consen 748 AKEQLKELEQQYNQELAGKGVDP-ERIQQLKQEIEQLEKELKRIEERRAEVIEYED 802 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455556656665554333333 58999999999999999999999998887654
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.41 E-value=0.28 Score=53.10 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 115 ~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
++.++..++.++...+........+++..+..+..+...+
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 331 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333333333333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.31 E-value=0.35 Score=52.03 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELK 141 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE 141 (313)
.+++.++..++.++..+..++...+.....+..+++
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 708 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELE 708 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444444333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.31 E-value=0.37 Score=52.21 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAK 123 (313)
Q Consensus 107 elE~QL~~~QeEL~k~K 123 (313)
+++.++..+++++..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~ 278 (1164)
T TIGR02169 262 ELEKRLEEIEQLLEELN 278 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.25 E-value=0.18 Score=47.47 Aligned_cols=52 Identities=25% Similarity=0.387 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 114 LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165 (313)
Q Consensus 114 ~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~ 165 (313)
....+|..++.++..+-..|+++..+++..+..+++++.+++........+.
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666666666666665544444333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.22 E-value=0.44 Score=51.28 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEK 133 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~K 133 (313)
....++.++..++.++..+..++...+...
T Consensus 678 e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.10 E-value=0.26 Score=46.48 Aligned_cols=187 Identities=18% Similarity=0.219 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHhhh-
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRA-VEMEQAGI- 183 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra-~ElEq~~~- 183 (313)
..++.+++.++.++..++.+++..-..+..+-.|+...++.+++.+.-.-..+..-....+...+-+.-- +|+...-.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 6788899999999999999999999999999999999999999888776666555555555444443222 22222110
Q ss_pred ---hhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH----HHHH
Q 039546 184 ---EASQKK----EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAEL----HVEK 252 (313)
Q Consensus 184 ---~~a~~~----~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~----~~eK 252 (313)
....+. ...+..-|..+|.+|...+..-. ++++ .-|..-+..-.....+...+...++. .-..
T Consensus 151 ~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~---~e~e---~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 151 IQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR---EELE---EWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccchhhhhhHHHHHHHHHhhhh---hhhh---hhcccccccccccccccccccchhHhHHHHHHhh
Confidence 111122 23344455667777766543332 2221 22222222222222232233322222 2233
Q ss_pred HHHHHHHHHHHHHH---h-------hhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 253 VEILSSELTRLKAL---L-------DSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 253 veeLt~EL~~lKe~---L-------es~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
+..|..+|..++.. | +..++.+.......|..|+.|+..|+.++..
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 66677777666642 2 2222333344456788888888888888754
No 12
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.10 E-value=0.69 Score=51.29 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHH
Q 039546 215 TQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKE 294 (313)
Q Consensus 215 k~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~ 294 (313)
+.|+.-+..-.+|+.-.|.-|--+|+.=+.-.+.-.+|+++|+.+|.=||+..+.....--..+.-...+||..+..||.
T Consensus 303 k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKd 382 (1243)
T KOG0971|consen 303 KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKD 382 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHH
Confidence 33444444445555555666666666666556667788999999999999888766322212333456667777776666
Q ss_pred HHHhhhhH
Q 039546 295 ELEKSRTF 302 (313)
Q Consensus 295 el~ka~~~ 302 (313)
-|-+-+++
T Consensus 383 alVrLRDl 390 (1243)
T KOG0971|consen 383 ALVRLRDL 390 (1243)
T ss_pred HHHHHHhc
Confidence 55555444
No 13
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.03 E-value=0.39 Score=49.91 Aligned_cols=183 Identities=16% Similarity=0.251 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
-.++.+|..+++.|..+...|...+-..+. ..++.-...|+.|...|+.--.+.+.+......-.--+..++.
T Consensus 252 ~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~--~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e----- 324 (569)
T PRK04778 252 LDIEKEIQDLKEQIDENLALLEELDLDEAE--EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE----- 324 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----
Confidence 357889999999999999888888777655 4566888999999999999887777777766665555555443
Q ss_pred hhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHA---LDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTR 262 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha---~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~ 262 (313)
....+..+|+.+++.|. .++........+|..+..+|..+...-+.....-.+....-+...++++.+..+...
T Consensus 325 ---~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~e 401 (569)
T PRK04778 325 ---QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEK 401 (569)
T ss_pred ---HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999986 456667778888999999888655443333333444444456666778888888888
Q ss_pred HHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 039546 263 LKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS 299 (313)
Q Consensus 263 lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka 299 (313)
+++.|..-+..+.... ..+.++...+..++..|++.
T Consensus 402 i~e~l~~Lrk~E~eAr-~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 402 LSEMLQGLRKDELEAR-EKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 8888887775554433 56788888888888877775
No 14
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.55 Score=53.03 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 188 KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALL 267 (313)
Q Consensus 188 ~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~L 267 (313)
......+.+++-.++...-....+.-++.|++-..-+|+.+....+..+++.+++...-........+...+|..+++.|
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456778888888888888889999999999999999999999999999999988766665566777777888888888
Q ss_pred hhhHhhhh------hhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 268 DSQRETES------IKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 268 es~~~~e~------~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
.+-...-. ........+|..-...|+++++.++.
T Consensus 552 ~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 552 PSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77442111 11112333344444466666666655
No 15
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.90 E-value=0.62 Score=47.49 Aligned_cols=145 Identities=20% Similarity=0.271 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
-++..||..+..||.-+..+...+|.++-.|-+||..+.-.-+-....+..+....-.|.+ +|-+.
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ----------~lar~---- 142 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ----------ELARL---- 142 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----
Confidence 3444455555555555555555555555555556555554433333333333322222222 11111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIK---QELAMT-TDAKNQALSHADDATKIAELHVEKVEILSSELT 261 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klr---qEl~~~-~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~ 261 (313)
..-..-++++|...-.||....+.++|+-.+-..|+ .++..- .+=+.-+.+-+.++...+ -..+-++-++.||.
T Consensus 143 -t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la-~r~~a~q~r~~ela 220 (499)
T COG4372 143 -TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA-TRANAAQARTEELA 220 (499)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 111234778888888888888888888776665555 333221 111111111222222222 23344666777777
Q ss_pred HHHHH
Q 039546 262 RLKAL 266 (313)
Q Consensus 262 ~lKe~ 266 (313)
+....
T Consensus 221 ~r~aa 225 (499)
T COG4372 221 RRAAA 225 (499)
T ss_pred HHHHH
Confidence 76553
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=96.86 E-value=0.9 Score=48.81 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 197 IEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLK 264 (313)
Q Consensus 197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lK 264 (313)
++....+...+...+....+++..++.+|.........+....+++..-......++.+|..++.++.
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555556666666666666666655555555555554444444455555555555554
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.86 E-value=0.3 Score=45.29 Aligned_cols=180 Identities=21% Similarity=0.239 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhH
Q 039546 112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEE 191 (313)
Q Consensus 112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~ 191 (313)
+..++.+|..+.+++..++..=..+...++.+.-.+..|+.++......-.++.+-......++.++++.. ++..
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~----de~e- 77 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA----DESE- 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH----HHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence 56788999999999999998888888888899999999999988887777777777777788888887743 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQ-------ELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLK 264 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrq-------El~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lK 264 (313)
.-+.+...++..+---|...-..|..++. -|+.+..-=...-..-+.|..-++....++.+|-.+|..+-
T Consensus 78 ---r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 78 ---RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 22333334444443333333333333333 33322222122222233444445566677888888888888
Q ss_pred HHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 265 ALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 265 e~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
..|.+--.++.+.. .....++..|..|...|..|.
T Consensus 155 ~~lk~lE~~~~~~~-~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 155 NNLKSLEASEEKAS-EREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 88887666655444 677899999999999988764
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.79 E-value=0.58 Score=53.06 Aligned_cols=99 Identities=23% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT-------TDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA 265 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~-------~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe 265 (313)
.+.-|+.+++.-+.+-..+.++.+.|.+|-.-.+.+ -.+-..+.+-|..|...|.......+.|-.-..+.+.
T Consensus 1596 a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~ 1675 (1758)
T KOG0994|consen 1596 AQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDR 1675 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665555566555554433322221 1222233444555555555555556677777777777
Q ss_pred HhhhhHhhhhhhhHHHHHHHHHHHHHH
Q 039546 266 LLDSQRETESIKNRELVLKLEEEIDTL 292 (313)
Q Consensus 266 ~Les~~~~e~~~~~e~~~~le~e~~~L 292 (313)
+|+...+.... +.+.+.+|..|+..|
T Consensus 1676 l~~~r~~g~~~-ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1676 LLEKRMEGSQA-ARERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHhhcchh-HHHHHHHHHHHHHHH
Confidence 88777654432 235566666666655
No 19
>PRK11637 AmiB activator; Provisional
Probab=96.66 E-value=0.82 Score=45.62 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQK 162 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~ 162 (313)
+++.+|..++++|...+..+.........+..+|....+.|..+..+|...+..-.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~ 99 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN 99 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555544443333
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=96.63 E-value=1.3 Score=47.55 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKE 132 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~ 132 (313)
..++.++..++.++..++.++...+..
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~~ 235 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARET 235 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555565555555555555555554433
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.60 E-value=1 Score=51.27 Aligned_cols=113 Identities=5% Similarity=0.097 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHhhhhh-hhh
Q 039546 116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRA------EENSEIEKFRAVEMEQAGIEA-SQK 188 (313)
Q Consensus 116 QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA------~e~sEl~k~Ra~ElEq~~~~~-a~~ 188 (313)
..+++.+++++...+..-..+..+|+.....++.+...++.+..-...+ .....-.+-++.+++...... ...
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 4566667777777776666666666666666666666665553322222 344444455555554321100 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
.-...+.++......+......+.....+..+++.++..+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134666666666666666555555555555555544444
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=1.8 Score=49.11 Aligned_cols=86 Identities=24% Similarity=0.283 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHH
Q 039546 214 TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLK 293 (313)
Q Consensus 214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~ 293 (313)
-..|+.++..++.-....-+.+-...+.|..-.++-..+.+.+..-+..+|+.|....++-.... ..|..++.++..++
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~-~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK-TELDDLKEELPSLK 555 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHH
Confidence 35678888888888888888888888888877777778888899999999999998876655444 56888999999999
Q ss_pred HHHHhhh
Q 039546 294 EELEKSR 300 (313)
Q Consensus 294 ~el~ka~ 300 (313)
+|+-.+.
T Consensus 556 ~e~~~~~ 562 (1293)
T KOG0996|consen 556 QELKEKE 562 (1293)
T ss_pred HHHHHHH
Confidence 9886553
No 23
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.27 E-value=3.1 Score=47.87 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=51.4
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 039546 99 QSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDE----------------LKEAQRVAEEANEKLQEALMAQK 162 (313)
Q Consensus 99 ~~r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~E----------------LE~AKr~ieeL~~KLE~a~~~q~ 162 (313)
..|..++.+|+.+|..+..+|..+..++...+..+.++-.| +..|.+.+......++.+...-.
T Consensus 738 ~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~ 817 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAA 817 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999888888887776655444 45555555555555555555555
Q ss_pred HHHHhhHHHHHHHH
Q 039546 163 RAEENSEIEKFRAV 176 (313)
Q Consensus 163 qA~e~sEl~k~Ra~ 176 (313)
.+..+..-++.++.
T Consensus 818 ~a~~~~~~a~~~l~ 831 (1353)
T TIGR02680 818 AAAAAWKQARRELE 831 (1353)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444433
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.23 E-value=3.2 Score=49.47 Aligned_cols=188 Identities=20% Similarity=0.293 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH----HHhhHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE----------ALMAQKRA----EENSEIE 171 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~----------a~~~q~qA----~e~sEl~ 171 (313)
..++.+...+++++...++++..-|....++..|...+...+..|...+.. .......+ ..+...+
T Consensus 925 ~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ 1004 (1930)
T KOG0161|consen 925 AELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAE 1004 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777777766666666655555555444443332221 11111000 0111111
Q ss_pred HH--------------HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 039546 172 KF--------------RAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS 237 (313)
Q Consensus 172 k~--------------Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~ 237 (313)
+- .+.+|+. .-+...-.+.++|-.+..+...+..+.....++...+.+|+..+.-+..-+.
T Consensus 1005 eek~~~l~k~~~kle~~l~~le~-----~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~ 1079 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEV-----TLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELS 1079 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112221 1122334556666666667777777777777777777777777777766665
Q ss_pred hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 039546 238 HAD----DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS 299 (313)
Q Consensus 238 ~Ae----eA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka 299 (313)
+.. +=..........|.+|...|..+.+.|+..+.+-++.- ...+.|..++..|+.+|+..
T Consensus 1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e-k~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE-RQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 422 21212223334477777777777777777776555443 34666667777777666665
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.95 E-value=3.9 Score=46.12 Aligned_cols=59 Identities=25% Similarity=0.301 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQK 162 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~ 162 (313)
+..+++.+|..++..+..+-..+......-.++...+...+.++.++...++.....-.
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888888888888888888777777777666654444
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.79 E-value=4.9 Score=45.93 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039546 211 LLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILS 257 (313)
Q Consensus 211 L~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt 257 (313)
|.-...++.++..+|+.+.........++...+...+.....+..|.
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445544444444444444444433333333333333
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.76 E-value=3.1 Score=45.61 Aligned_cols=115 Identities=14% Similarity=0.190 Sum_probs=73.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHH
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKF--RAVEME 179 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~--Ra~ElE 179 (313)
-+++..++--|..++.||-.++.++..++..+.....+|+.=+....-++.+++.+...-. ..++|+..+ +..-+.
T Consensus 237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~--rk~~E~~~~qt~l~~~~ 314 (775)
T PF10174_consen 237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELS--RKKSELEALQTRLETLE 314 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999888888888888887743333 333333333 333333
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 180 QAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQ 219 (313)
Q Consensus 180 q~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~ 219 (313)
...++- ..+-..++..|.+...+|..--++++....+|+
T Consensus 315 ~~~~d~-r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 315 EQDSDM-RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222221 222233455555555555554444444443333
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.65 E-value=5.1 Score=45.21 Aligned_cols=51 Identities=31% Similarity=0.389 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ 155 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE 155 (313)
+..++.++..+-.++..++..+...+.....+-..+...++.++.+...+.
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444334444443333333333
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.62 E-value=2.1 Score=48.81 Aligned_cols=111 Identities=20% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHH
Q 039546 114 LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEW 193 (313)
Q Consensus 114 ~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~ 193 (313)
.++.-+..+++-|+.|+.+-..|.+=+..|-+-+.....-|..++.+-.-|+...-.+-.|+.+|+.-..+. +..++
T Consensus 1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l---k~~~~ 1636 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL---KHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 444444555566666666666666666666666666666666666666666666666666777766532111 01122
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 039546 194 QKEIEAVRNQHA--LDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 194 k~ELE~ar~qha--~~~AeL~Sak~EL~klrqEl~~ 227 (313)
+.-.++...... ++...-..|.+.++.|+..|..
T Consensus 1637 qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1637 QNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 2222334567777766666654
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.55 E-value=5.3 Score=44.73 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhh---------hHHHHH
Q 039546 213 STTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIK---------NRELVL 283 (313)
Q Consensus 213 Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~---------~~e~~~ 283 (313)
+.|+..+++.+++++.-.+= .+-.+..+.-..+++++-.-|..+|+.+|.+...|+-- --+.|+
T Consensus 393 ~ek~d~qK~~kelE~k~sE~-------~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVk 465 (1243)
T KOG0971|consen 393 SEKQDHQKLQKELEKKNSEL-------EELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVK 465 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHH
Confidence 34555555555555432221 12233444555667777778888888888888776611 114566
Q ss_pred HHHHHHHH
Q 039546 284 KLEEEIDT 291 (313)
Q Consensus 284 ~le~e~~~ 291 (313)
.||++|..
T Consensus 466 lLeetv~d 473 (1243)
T KOG0971|consen 466 LLEETVGD 473 (1243)
T ss_pred HHHHHHHH
Confidence 66666643
No 31
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.43 E-value=0.62 Score=40.63 Aligned_cols=101 Identities=26% Similarity=0.346 Sum_probs=61.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546 101 RLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 101 r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
.-.|.+.++.+|+.+++.|..++..+..++.....+ +...|-|.-|-..|+.+..--..+.+-..-...++.+++.
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~----E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR 115 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA----EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFER 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345779999999999999999999999887654332 1334444444444444433333333333333444444443
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039546 181 AGIEASQKKEEEWQKEIEAVRNQHAL 206 (313)
Q Consensus 181 ~~~~~a~~~~~a~k~ELE~ar~qha~ 206 (313)
.... .......|-..++.+..+|..
T Consensus 116 kv~~-le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 116 KVKA-LEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence 2211 122356799999999999975
No 32
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.25 E-value=2.6 Score=39.34 Aligned_cols=175 Identities=24% Similarity=0.267 Sum_probs=114.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ-EALMAQKRAEENSEIEKFRAVEMEQA 181 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE-~a~~~q~qA~e~sEl~k~Ra~ElEq~ 181 (313)
-+++.|+.+|+..|+-+.-+..+|..++ |+.+|-+...+.|+--..+|+ +......|..++..++.--....+.
T Consensus 11 rri~~leeele~aqErl~~a~~KL~Eae----q~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE- 85 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATALQKLEEAE----QAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE- 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3778999999999999999999999887 567888889999999999998 4444455555555444433333322
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039546 182 GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELT 261 (313)
Q Consensus 182 ~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~ 261 (313)
....=+....+|+.+-++-...-+...-.-.++..+...+..+--.-...+++ -......+..|+.
T Consensus 86 ----VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~-------~d~~e~~ik~ltd--- 151 (205)
T KOG1003|consen 86 ----VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQK-------EEKYEEELKELTD--- 151 (205)
T ss_pred ----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhh-------HHHHHHHHHHHHH---
Confidence 12223455677888888877777777777778888777776654333333333 1223344444443
Q ss_pred HHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 262 RLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 262 ~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
.||+. +..+.-+-.-|.+|+.+++.|-..|...+.
T Consensus 152 KLkEa-----E~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 152 KLKEA-----ETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHhhh-----hhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 34431 111222225689999999999888876553
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.25 E-value=9.5 Score=45.78 Aligned_cols=128 Identities=21% Similarity=0.232 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
.++|.+|.-++..+-...++....+..+..+-+++..-+..++++...+.+++.+...+.....--+-+...++..
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~---- 979 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN---- 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4555556666666666666666666666666666666666777666666666655555444333333232222221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH 238 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~ 238 (313)
..+-.--+.+|+.+-.++..++....--...|.+++..|+..++.....+.+
T Consensus 980 -~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 980 -ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111223344666655666666666555556666666666655555554443
No 34
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.22 E-value=2.6 Score=45.77 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=78.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHH
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALM------AQKRAEENSEIEKFRA 175 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~------~q~qA~e~sEl~k~Ra 175 (313)
++-+.+|=++|+.- ||.|++.||...|..|...+.-|++++..++-....|-.=+. ++-.|+......+-+-
T Consensus 252 ~~lv~DLfSEl~~~--EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~ 329 (717)
T PF09730_consen 252 PSLVSDLFSELNLS--EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQ 329 (717)
T ss_pred CcccchhhhhcchH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 44568888998874 899999999999999999999999999999777766653211 1122222111100000
Q ss_pred HHHHHhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546 176 VEMEQAGIEASQKKEEEW---QKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD 230 (313)
Q Consensus 176 ~ElEq~~~~~a~~~~~a~---k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ 230 (313)
..........+++..... -..++...-+|..++.+....+.||..|+..|...-.
T Consensus 330 ~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 330 SAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred hhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000011100000 0125667788999999999999999999999987644
No 35
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.15 E-value=5 Score=41.96 Aligned_cols=181 Identities=20% Similarity=0.304 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
-++..+|..+++.|..+...|...+-..+. ..++.....|+.|..-|+.=-.++....+......-.+..+..
T Consensus 248 ~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~--~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~----- 320 (560)
T PF06160_consen 248 LDIEEEIEQIEEQLEEALALLKNLELDEVE--EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKE----- 320 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----
Confidence 457889999999999999999888776654 4566788899999999998777777666666555555444433
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASL---LSTTQELQRIKQELAMTT---DAKNQALSHADDATKIAELHVEKVEILSSE 259 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL---~Sak~EL~klrqEl~~~~---~ak~aA~~~AeeA~~aae~~~eKveeLt~E 259 (313)
.+..+..+++.++..|...--++ .....+|..|...|..+. .....+++...+-. +...+.++.+..+
T Consensus 321 ---~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l---~~~~~~l~~ie~~ 394 (560)
T PF06160_consen 321 ---QNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEEL---EEIEEQLEEIEEE 394 (560)
T ss_pred ---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH---HHHHHHHHHHHHH
Confidence 36779999999999997654444 445567777777776554 33444444444333 4455667778888
Q ss_pred HHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 260 LTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 260 L~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
...+.+.|..-...|. .+.+.+.++...+...+..+++.+
T Consensus 395 q~~~~~~l~~L~~dE~-~Ar~~l~~~~~~l~~ikR~lek~n 434 (560)
T PF06160_consen 395 QEEINESLQSLRKDEK-EAREKLQKLKQKLREIKRRLEKSN 434 (560)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888888775554 445889999999999999999875
No 36
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.96 E-value=4.1 Score=41.91 Aligned_cols=188 Identities=25% Similarity=0.290 Sum_probs=100.8
Q ss_pred cchhhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKA----------------------KEKIELIEKEKVQAIDELKE-AQRVAEEANEKLQEALM 159 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~----------------------KeQl~~AE~~KaqAl~ELE~-AKr~ieeL~~KLE~a~~ 159 (313)
..++.|+.||+....+++-. -.-+..-|.+.-+++.||.. -.|.++-|...-+..++
T Consensus 298 k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLA 377 (593)
T KOG4807|consen 298 KEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLA 377 (593)
T ss_pred HHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45688888888776665322 22233445555555555543 23444444443333332
Q ss_pred HHHHH-HHhhHHHHHHH-HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 039546 160 AQKRA-EENSEIEKFRA-VEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS 237 (313)
Q Consensus 160 ~q~qA-~e~sEl~k~Ra-~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~ 237 (313)
++--| +.+-|.+|.-- .||+... +++....+..+..|.||-. +|.+++.||+-|-.+|.--+-+ ++.+-
T Consensus 378 EETAATiSAIEAMKnAhrEEmeREL-----eKsqSvnsdveaLRrQyle---elqsvqRELeVLSEQYSQKCLE-nahLa 448 (593)
T KOG4807|consen 378 EETAATISAIEAMKNAHREEMEREL-----EKSQSVNSDVEALRRQYLE---ELQSVQRELEVLSEQYSQKCLE-NAHLA 448 (593)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH-----HhhhccccChHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 22111 12223333322 4444421 1233456667889999965 7889999999999998654322 33444
Q ss_pred hhHHHHHHH-----------HHHHHH-HHHHHHHHHHHHHHhhhhHhhhhh----h--hH----------HHHHHHHHHH
Q 039546 238 HADDATKIA-----------ELHVEK-VEILSSELTRLKALLDSQRETESI----K--NR----------ELVLKLEEEI 289 (313)
Q Consensus 238 ~AeeA~~aa-----------e~~~eK-veeLt~EL~~lKe~Les~~~~e~~----~--~~----------e~~~~le~e~ 289 (313)
+|-+|.+-+ ..+... -+-|..||.+|+..|.+...+... + +- -.|.-|.-||
T Consensus 449 qalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEi 528 (593)
T KOG4807|consen 449 QALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEI 528 (593)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHH
Confidence 444443222 112222 234889999999999876653221 1 10 1344556666
Q ss_pred HHHHHHHHhh
Q 039546 290 DTLKEELEKS 299 (313)
Q Consensus 290 ~~L~~el~ka 299 (313)
+.||-+|+-+
T Consensus 529 ssLkDELQta 538 (593)
T KOG4807|consen 529 SSLKDELQTA 538 (593)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.90 E-value=8.9 Score=43.61 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546 189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA 231 (313)
Q Consensus 189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a 231 (313)
.-..|+.+++..+.+|..-...-..+......+++.+......
T Consensus 353 ~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~ 395 (1201)
T PF12128_consen 353 QLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR 395 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999888888777766666666666655555544433
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.75 E-value=6.7 Score=41.48 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKA 122 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~ 122 (313)
.-+|.+|..+|++...+
T Consensus 139 ~~lQ~qlE~~qkE~eeL 155 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEEL 155 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554333
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.36 E-value=7.1 Score=40.10 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ 161 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q 161 (313)
++.+.+.++.+++.+|+..+..+...+..-.+...+|.+.++.|+++...|+..+..+
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566667778888888888888888888888888899999999999988888876554
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.26 E-value=8.6 Score=40.70 Aligned_cols=83 Identities=28% Similarity=0.294 Sum_probs=53.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT-TDAKNQALSHADDAT---KIAELHVEKVEILSSELT 261 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~-~~ak~aA~~~AeeA~---~aae~~~eKveeLt~EL~ 261 (313)
++....-++.||..+....--.+++|..++-|...|+.+++.+ +.-|....+.+.+.. ..++....+|+.|+.|+.
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~ 381 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQ 381 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444556777777777777777888888888888888776644 233333333333333 234444457888999998
Q ss_pred HHHHHhh
Q 039546 262 RLKALLD 268 (313)
Q Consensus 262 ~lKe~Le 268 (313)
.+.+.|.
T Consensus 382 ~~e~~lq 388 (546)
T PF07888_consen 382 MLEEHLQ 388 (546)
T ss_pred HHHHHHH
Confidence 8877663
No 41
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.14 E-value=11 Score=41.35 Aligned_cols=159 Identities=23% Similarity=0.285 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh------HHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEE--ANEKLQEALMAQKRAEENS------EIEKFRAVE 177 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~iee--L~~KLE~a~~~q~qA~e~s------El~k~Ra~E 177 (313)
-.+|++|+++.++++-+..-|+ +--+|+|. ++.+|-.+++ ++.+++.-. .+...+ +-.-.|+-.
T Consensus 342 d~~q~eLdK~~~~i~~Ln~~le---aReaqll~-~e~~ka~lee~~~n~~~e~~~----~k~~~s~~ssl~~e~~QRva~ 413 (961)
T KOG4673|consen 342 DDVQLELDKTKKEIKMLNNALE---AREAQLLA-DEIAKAMLEEEQLNSVTEDLK----RKSNESEVSSLREEYHQRVAT 413 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHhhhHHHHHH----HHhhcccccchHHHHHHHHHH
Confidence 3468889999888877777666 33344443 5777777777 666666532 222222 223456677
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHH-HHHH-hhHHHHHHHhhhhHHHHHHH
Q 039546 178 MEQAGIEASQKKEEEWQKEIEAVRNQHALDVAS-LLSTTQ--------ELQRIK-QELA-MTTDAKNQALSHADDATKIA 246 (313)
Q Consensus 178 lEq~~~~~a~~~~~a~k~ELE~ar~qha~~~Ae-L~Sak~--------EL~klr-qEl~-~~~~ak~aA~~~AeeA~~aa 246 (313)
+|+-.. .+....++++.++.+.++..+..+-- +..-++ |=++|- +++. ..+.-|.-|-- .++..+-
T Consensus 414 lEkKvq-a~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~--ke~etl~ 490 (961)
T KOG4673|consen 414 LEKKVQ-ALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI--KEAETLE 490 (961)
T ss_pred HHHHHH-HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhhHHH
Confidence 776432 23444567888888888766655432 322222 223332 2222 23333433322 2344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 039546 247 ELHVEKVEILSSELTRLKALLDSQRETES 275 (313)
Q Consensus 247 e~~~eKveeLt~EL~~lKe~Les~~~~e~ 275 (313)
+-+.++|..|..|..+||-.|+.+-+.|-
T Consensus 491 ~K~ge~i~~L~sE~~~lk~il~~Kee~Ek 519 (961)
T KOG4673|consen 491 EKKGELITKLQSEENKLKSILRDKEETEK 519 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 67888999999999999999998877654
No 42
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.04 E-value=4.4 Score=39.01 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
+.++..++.+....-..+..+..++..+..++
T Consensus 209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 240 (423)
T TIGR01843 209 QGELGRLEAELEVLKRQIDELQLERQQIEQTF 240 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.80 E-value=6.4 Score=37.54 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 127 ELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 127 ~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
...+.-......+|+.++-.++.++..|...
T Consensus 20 ~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~ 50 (239)
T COG1579 20 DRLEPRIKEIRKALKKAKAELEALNKALEAL 50 (239)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333345555555555555555555443
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.69 E-value=18 Score=42.45 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e 166 (313)
.+++.+|..+++++.++++.++..+. ......++......+++|...|+.....-..+.+
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~LeELee~Lee~eeeLeelee 376 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQADLEELEERLEEQNEVVEEADE 376 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555444444332 1123444555555555555555555444433333
No 45
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.48 E-value=6.9 Score=36.90 Aligned_cols=100 Identities=20% Similarity=0.173 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
.+++.+|..++..|..+..++...+....+...++..++..++.+...|+.+ +..-.|.+.|-+.
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a-----------~~~~~r~~~L~~~---- 140 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQA-----------ELDLRRRVPLFKK---- 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHC----
Confidence 6677888899999988888888888877777777777777666666665554 2222334444221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQE 224 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqE 224 (313)
...-+.+++.++.+|....++|.++..++....+.
T Consensus 141 ----g~is~~~~~~a~~~~~~a~~~l~~~~~~~~~~~~~ 175 (334)
T TIGR00998 141 ----GLISREELDHARKALLSAKAALNAAIQEQLNANQA 175 (334)
T ss_pred ----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234678888888888888888777764444333
No 46
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.47 E-value=0.021 Score=62.12 Aligned_cols=187 Identities=26% Similarity=0.331 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA 181 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~ 181 (313)
...+.+|+++|.-+++||..-+.--.-+|..|.....||+.-+..+++....-. ++. +....-+.|+.++| .+||..
T Consensus 38 ~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~-aq~-E~~kkrE~El~~Lr-r~LEe~ 114 (859)
T PF01576_consen 38 QKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQ-AQI-ELNKKREAELAKLR-RDLEEA 114 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH-hhH-HHHHHHHHHHHHHH-HHHHHH
Confidence 457789999999999999888888888999999999998877777766654411 111 12233445777766 455432
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHhhhhHHHHHHHHHHHHH-HHHHH
Q 039546 182 GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM---TTDAKNQALSHADDATKIAELHVEK-VEILS 257 (313)
Q Consensus 182 ~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~---~~~ak~aA~~~AeeA~~aae~~~eK-veeLt 257 (313)
. ......+..+|..|...+++|..-.+.|++.+..++- .+......+..-=+....++.+.+| +..|-
T Consensus 115 ~--------~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE 186 (859)
T PF01576_consen 115 N--------LQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLE 186 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 1 2234667888899999999887766666655544431 1222222222222233345555555 55566
Q ss_pred HHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 258 SELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 258 ~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
..|..++.-++..-. .-........+|..||+.|...|+.+.
T Consensus 187 ~qL~El~~klee~er-~~~el~~~k~kL~~E~~eL~~qLee~e 228 (859)
T PF01576_consen 187 AQLNELQAKLEESER-QRNELTEQKAKLQSENSELTRQLEEAE 228 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677766665554332 113333566778888888877776554
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.16 E-value=13 Score=39.31 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 039546 118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEI 197 (313)
Q Consensus 118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~EL 197 (313)
||..++.-+..+...++++..|+...+-.+++|+.++++++.....+.++.--...++-+ .+.++
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~---------------leAe~ 157 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSE---------------LEAEI 157 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh---------------hhhHH
Confidence 445556667777778888888888888888888888888765555555544444433333 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 198 EAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA 265 (313)
Q Consensus 198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe 265 (313)
..++.++..---++.-.+.|..+|+.+|..+-...+.. +-.=-....++..|..||.-|+.
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E-------tllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE-------TLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHh
Confidence 66666666666677777777777777776554433332 21122345667778878877773
No 48
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.15 E-value=7.9 Score=37.21 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
.+++.+|.+++-++..++.++..++..-.....+++.++..+..+...|+.+ . ..-.|.+.|-+.
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a-------~----~~~~R~~~L~~~---- 146 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLA-------T----RTLERLEPLLAK---- 146 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHC----
Confidence 4556677777777777777776655333222233333333333333333322 1 112233444221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
...-+.+++.++.+|..+-++|..++.++..+...+
T Consensus 147 ----g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~ 182 (346)
T PRK10476 147 ----GYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAV 182 (346)
T ss_pred ----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123456778888888877777777777777666544
No 49
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=92.69 E-value=1.8 Score=38.03 Aligned_cols=118 Identities=25% Similarity=0.282 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHhhhhhhh
Q 039546 109 QAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE-MEQAGIEASQ 187 (313)
Q Consensus 109 E~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E-lEq~~~~~a~ 187 (313)
+.||++++++|..+..++.+++.+=.....||+.|-+.+-|...|+ ..|++-. |..++.+-.
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~----------------~~~~a~~P~~~~~~~wq- 76 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQ----------------DEFFANNPPHEYGRGWQ- 76 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCCTT-TTSSCHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc----------------cccccCCCccccccHHH-
Confidence 5789999999999999999888885555555555555444422222 1122211 111111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 039546 188 KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDAT 243 (313)
Q Consensus 188 ~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~ 243 (313)
.+=.-|+.+++.-+.+..++-.+|..+-+||..++.=+..+.+.+....++..+|.
T Consensus 77 lkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAe 132 (136)
T PF11570_consen 77 LKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAE 132 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 11123666667777777788888888888888888888888888877766655543
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.67 E-value=18 Score=39.37 Aligned_cols=186 Identities=18% Similarity=0.287 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLK-------KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEM 178 (313)
Q Consensus 106 ~elE~QL~~~QeEL~-------k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~El 178 (313)
.-||.+|..++-||. +++-|+..-...-..+-.||...+...|+|..||-....++++=++.....+-|+.+.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777764 4556666666666788889999999999999998888777777777777777676554
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHH-----------------HHHH-HHHH----HHHHHHHHHHHHhhHHHHHHHh
Q 039546 179 EQAGIEASQKKEEEWQKEIEAVRNQHAL-----------------DVAS-LLST----TQELQRIKQELAMTTDAKNQAL 236 (313)
Q Consensus 179 Eq~~~~~a~~~~~a~k~ELE~ar~qha~-----------------~~Ae-L~Sa----k~EL~klrqEl~~~~~ak~aA~ 236 (313)
... -..+..+|..-|.+... +.++ |..- -.||.+|+.||-..=+.....-
T Consensus 501 ~~~--------R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 501 RRQ--------RASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHH--------HHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 12233333333322110 1111 2222 2456666666655444444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHhhh-------------hhhhH----HHHHHHHHHHHHHHHHH
Q 039546 237 SHADDATKIAELHVEKVEILSSELTRLKA---LLDSQRETE-------------SIKNR----ELVLKLEEEIDTLKEEL 296 (313)
Q Consensus 237 ~~AeeA~~aae~~~eKveeLt~EL~~lKe---~Les~~~~e-------------~~~~~----e~~~~le~e~~~L~~el 296 (313)
....+....-+.+..-++.|-..|.+|++ -|+...-.| ++..- ..+.+=+.||..||++|
T Consensus 573 ~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 573 SELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332223344458888889999988 344333322 21111 23555677787777776
Q ss_pred Hhh
Q 039546 297 EKS 299 (313)
Q Consensus 297 ~ka 299 (313)
...
T Consensus 653 ~~~ 655 (697)
T PF09726_consen 653 AQL 655 (697)
T ss_pred HHH
Confidence 543
No 51
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.99 E-value=7 Score=33.24 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH 238 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~ 238 (313)
.|+.++..|..++.++..++.++..+-...+.+-..
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998887776665554443
No 52
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.95 E-value=8.2 Score=38.24 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
-+.+|+.++.+|..+-+.|..++..|...+..+
T Consensus 156 S~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~ 188 (390)
T PRK15136 156 GREELQHARDAVASAQAQLDVAIQQYNANQAMI 188 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888888888888888888888777766554
No 53
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.78 E-value=5.4 Score=37.31 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKE 190 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~ 190 (313)
++-.+-+|++-..--|.+-+..--++.+.++.-+..|-.|+.||..+- --.+++.-++.-|+.. -
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE-------~rAE~aERsVakLeke--------~ 174 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE-------TRAEFAERRVAKLEKE--------R 174 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHccc--------H
Confidence 334444555555555555556666777888888999999999998872 3345666788888773 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQR 220 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~k 220 (313)
..|...|...+..|.....+|+-+-++|+.
T Consensus 175 DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 175 DDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 359999999999999999998888888763
No 54
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.66 E-value=29 Score=39.72 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546 110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQR---------VAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr---------~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
.+.+..+++...|+.+++.+.....++..+|+.-+. ...+|...|..++..-..+.++......+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~ 137 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISD 137 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 355666677777788888877777777777763221 13455555555544444444444444444433322
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 039546 181 AGIEASQKKEEEWQKEIEAVRNQ---------------HALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKI 245 (313)
Q Consensus 181 ~~~~~a~~~~~a~k~ELE~ar~q---------------ha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~a 245 (313)
.....++.. .+.+..|..++.+ ...--+++..-+.++..+++++...-.--+. ...-
T Consensus 138 ~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L-------~~~q 209 (1109)
T PRK10929 138 SLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQEL-------ARLR 209 (1109)
T ss_pred HHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-------HHHH
Confidence 211111211 2333444433332 2333445555555666666665533222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Q 039546 246 AELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKL 285 (313)
Q Consensus 246 ae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~l 285 (313)
-+....++..|..+|..|++.++..+-.++..+.+....+
T Consensus 210 ~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~ 249 (1109)
T PRK10929 210 SELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELL 249 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888887766665554444443
No 55
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.54 E-value=8.2 Score=33.10 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEA 150 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL 150 (313)
-+..++++|.+..-|+.-+++++...+..|..+-+|+-..-...+++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999988876655444444
No 56
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.51 E-value=25 Score=38.67 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HHH---hhhhhhhhhhHHHHHHHHHHHHHH
Q 039546 136 AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE--------MEQ---AGIEASQKKEEEWQKEIEAVRNQH 204 (313)
Q Consensus 136 Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E--------lEq---~~~~~a~~~~~a~k~ELE~ar~qh 204 (313)
++-||+++++.|..|+.+|+. . +.|+. ..+.++.-+.| +-. ..+.+...+ ..+-+.+..+-+-+
T Consensus 344 ~q~eLdK~~~~i~~Ln~~lea-R--eaqll-~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~-~e~~QRva~lEkKv 418 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEA-R--EAQLL-ADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLR-EEYHQRVATLEKKV 418 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H--HHHHH-HHHHHHHHHHHHHhhhHHHHHHHHhhcccccchH-HHHHHHHHHHHHHH
Confidence 788999999999999999983 2 22222 22333322222 100 111122222 23445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHhhh--hhhh
Q 039546 205 ALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS----QRETE--SIKN 278 (313)
Q Consensus 205 a~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les----~~~~e--~~~~ 278 (313)
-..+-+=++.+-|+..||.+++..+-.-.. .-.++-+......++| |++++..--.-+.- ..+.+ ....
T Consensus 419 qa~~kERDalr~e~kslk~ela~~l~~DeL--aEkdE~I~~lm~EGEk---LSK~ql~qs~iIkKLRAk~ke~etl~~K~ 493 (961)
T KOG4673|consen 419 QALTKERDALRREQKSLKKELAAALLKDEL--AEKDEIINQLMAEGEK---LSKKQLAQSAIIKKLRAKIKEAETLEEKK 493 (961)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 677778889999999999999876655111 1122222222223333 34333221111111 11222 2445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039546 279 RELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 279 ~e~~~~le~e~~~L~~el~ 297 (313)
.+.|.+|++|...|+.=|-
T Consensus 494 ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 494 GELITKLQSEENKLKSILR 512 (961)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 5788888888887776553
No 57
>PRK09039 hypothetical protein; Validated
Probab=91.50 E-value=15 Score=36.20 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
.....+|...+..|+..-..+....+||..||.+++.+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44668889999999999999999999999999996654
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.96 E-value=15 Score=35.07 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD 230 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ 230 (313)
.++..++..++.|-...--+|.-+.++++++..+...+.+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776666666667777766666654433
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.70 E-value=41 Score=39.68 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN 233 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~ 233 (313)
....+|+..+.++.....++....+++..++.++.......+
T Consensus 366 e~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~ 407 (1486)
T PRK04863 366 EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD 407 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666666666655433333
No 60
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.59 E-value=21 Score=36.03 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA 231 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a 231 (313)
...+.+|.....+|..+--.+...+.+|..++.++...+..
T Consensus 257 ~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~ 297 (498)
T TIGR03007 257 EALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSA 297 (498)
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccc
Confidence 34677888888889888888899999999999998766543
No 61
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.48 E-value=37 Score=38.75 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEK 133 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~K 133 (313)
.+.|.||.-.|.||..+-++|...++..
T Consensus 680 ~~~~~~~~~~q~el~~le~eL~~le~~~ 707 (1174)
T KOG0933|consen 680 KQAQKELRAIQKELEALERELKSLEAQS 707 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555543
No 62
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.31 E-value=18 Score=34.85 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 196 EIEAVRNQHALDVASLLSTTQELQRIKQE 224 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~Sak~EL~klrqE 224 (313)
++..++.+|...-.+|..+..+|..++.+
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 225 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQ 225 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 63
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.98 E-value=5.3 Score=32.01 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHhhhhhhhHHHHHHHHHHHHHHHH
Q 039546 218 LQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA---LLDSQRETESIKNRELVLKLEEEIDTLKE 294 (313)
Q Consensus 218 L~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe---~Les~~~~e~~~~~e~~~~le~e~~~L~~ 294 (313)
|..||.||+.+..+-+..-.+. ..-.-|+.-=-.|+..++. .|+..| ..+-.+-|+||..||.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~-------~e~e~ki~~Qi~Em~~ir~~v~eLE~~h-------~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQK-------DEYEHKINSQIQEMQQIRQKVYELEQAH-------RKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4566666666554443322222 2233444444557777777 455555 5778889999999999
Q ss_pred HHHhh
Q 039546 295 ELEKS 299 (313)
Q Consensus 295 el~ka 299 (313)
+|+.-
T Consensus 72 eLe~r 76 (79)
T PF08581_consen 72 ELEQR 76 (79)
T ss_dssp HHCHH
T ss_pred HHHhh
Confidence 99864
No 64
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.85 E-value=7.2 Score=38.07 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIE------KEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE------~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~ 165 (313)
..++.+++.++.|...|..-|...+ ..-.....|+...+....+|...|+....+.....
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~ 77 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELD 77 (314)
T ss_dssp ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777766665544 22344555666666666666666665544443333
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.74 E-value=42 Score=38.32 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE 272 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~ 272 (313)
.+..|-.+..+-.....+-..-..|++-+++.++++.-+.+..--.=.++......-...+..|...|..+++.++-...
T Consensus 314 ~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~ 393 (1074)
T KOG0250|consen 314 ARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG 393 (1074)
T ss_pred HhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333444444444445555556666666666666655554433333344433444444577777777777777644333
Q ss_pred hhhhh-------hHHHHHHHHHHHHHHHHHHHh
Q 039546 273 TESIK-------NRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 273 ~e~~~-------~~e~~~~le~e~~~L~~el~k 298 (313)
++--+ -...|.+++..+..|+.+++.
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 224566677777777777654
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.65 E-value=35 Score=37.23 Aligned_cols=108 Identities=21% Similarity=0.288 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hh--hhhhhh
Q 039546 112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ-AG--IEASQK 188 (313)
Q Consensus 112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq-~~--~~~a~~ 188 (313)
++++.++| +.++......+.+=+.+|...+..++.++.+-+....-=..+.+..+.=..|+..+=+ .. .-....
T Consensus 556 ~~~ar~ei---~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~ 632 (717)
T PF10168_consen 556 QDLAREEI---QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSE 632 (717)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 45556655 4455555555666555555555555554333332222222223333333334433311 11 112234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIK 222 (313)
Q Consensus 189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klr 222 (313)
.+..|+.||+.++.+...--+.|..++.-+++.+
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999888876554455555555554433
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.42 E-value=26 Score=35.51 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 210 SLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 210 eL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~ 271 (313)
.+....+++..++.++..+-+.....- ....-......++.+|..+|...+..|++..
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~----~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~ 357 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELE----EIMDEFNEQSKKLLELKNKISTNKQSLITLV 357 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666665554444211 1122233345566666666666666665543
No 68
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.32 E-value=16 Score=32.99 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
.-|+..|--++++|.+++..+...-+.+.+.-.+++.+.+.+.++..+.+.|...- .-++++.-+.+....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g-----~edLAr~al~~k~~~---- 96 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG-----REDLAREALQRKADL---- 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH----
Confidence 55677888999999999999999999999999999999999999998888774332 234444443333221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN 233 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~ 233 (313)
...-...+..++.+..+....-..|......|..++....+++.-..
T Consensus 97 -e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 97 -EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123355555555555555555566666666666666665544333
No 69
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.06 E-value=19 Score=33.48 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
-+.+|+..=-.++.+..+++..++.+|-.-++...|+...++.+-.+.+=|+.+
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777789999999999999999999999999988888887776555544
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.33 E-value=53 Score=37.59 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIE 130 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE 130 (313)
..++..|.-++++++.+++.+.+.+
T Consensus 231 ~~~~e~i~~l~k~i~e~~e~~~~~~ 255 (1074)
T KOG0250|consen 231 DLKEEEIKNLKKKIKEEEEKLDNLE 255 (1074)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776443
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.25 E-value=68 Score=38.75 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh--h
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG--I 183 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~--~ 183 (313)
.++..|=..++.|++.++.+|......+..+..+++.-+.++..|+.--...+..+.+++...+-.+.++..+.... .
T Consensus 69 ~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l 148 (1822)
T KOG4674|consen 69 SDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDL 148 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667888999999999999999999999999999999999999888888889999988888777766665532 1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHH
Q 039546 184 EASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS-----HADDATKIAELHVEKVEILSS 258 (313)
Q Consensus 184 ~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~-----~AeeA~~aae~~~eKveeLt~ 258 (313)
+...........++++...+|.. ...+..-++.++-|+++++.....+ |. ..+.=...-..+..-+.+|..
T Consensus 149 ~~ql~ss~~~~~e~e~r~~e~~s---~~vs~q~k~~rl~QEksll~s~~~w-L~~eL~~~~ekll~~~re~s~~~~~L~~ 224 (1822)
T KOG4674|consen 149 NDQLKSSTKTLSELEARLQETQS---EDVSSQLKEERLEQEKSLLESENKW-LSRELSKVNEKLLSLRREHSIEVEQLEE 224 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 11111122334455555555544 3444666677777777665443322 11 111111122223333556666
Q ss_pred HHHHHHHHhhhhHh
Q 039546 259 ELTRLKALLDSQRE 272 (313)
Q Consensus 259 EL~~lKe~Les~~~ 272 (313)
.|..++..+....+
T Consensus 225 ~L~~~~~~~~~~q~ 238 (1822)
T KOG4674|consen 225 KLSDLKESLAELQE 238 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655553
No 72
>PRK09039 hypothetical protein; Validated
Probab=88.03 E-value=29 Score=34.28 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 251 EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 251 eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
-.|..|..+|.+|+..|..-.+.= ...-+........|..|..+|+.|.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L-~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAAL-DASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666543332100 1111223455555566666665553
No 73
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.68 E-value=59 Score=37.40 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDEL-------KEAQRVAEEAN 151 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~EL-------E~AKr~ieeL~ 151 (313)
.+||.+|.+++.+|...++++...-.--.++.+-+ ..+++.+.+.+
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~ 157 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIE 157 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 55555555555555555555554433333333333 44555555555
No 74
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.62 E-value=50 Score=36.53 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN 167 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~ 167 (313)
.+..-.+..|..+|+.|...+..+...+.|.+.-+--+++.+.-|+..+..-..+.+.
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557788888999999999998888888777777777777777765444334333
No 75
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.34 E-value=60 Score=37.15 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 247 ELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 247 e~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
+....|++.|..||-..+..+.+.- .+.....+.+..+..++..|+..|..
T Consensus 416 k~a~~k~e~~~~elk~~e~e~~t~~-~~~~~~~~~ld~~q~eve~l~~~l~~ 466 (1174)
T KOG0933|consen 416 KQAKLKLEHLRKELKLREGELATAS-AEYVKDIEELDALQNEVEKLKKRLQS 466 (1174)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666555554433 12222224455555555555555543
No 76
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.29 E-value=28 Score=34.29 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=61.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA 181 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~ 181 (313)
..||.++|.||+++.+|-..-.=||++.|++ |.+.|+.+++-+.+.-...-+-...++..+-..-.-+-|...
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAa-------LqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAA-------LQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 5689999999999999999999999999986 444555555544443333333333333333222222222221
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 182 GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 182 ~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
.. .-...=.-+.-+|.+.+.+-..--.+|.--+.||++.++..
T Consensus 90 lq-~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 90 LQ-VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 00000011233455555555555555555555555544443
No 77
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.22 E-value=57 Score=36.78 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 039546 281 LVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 281 ~~~~le~e~~~L~~el~ka~~ 301 (313)
.+.++..++..+..+......
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~ 881 (1047)
T PRK10246 861 QQQALMQQIAQATQQVEDWGY 881 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544443333
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=86.91 E-value=49 Score=35.64 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQE 224 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqE 224 (313)
.|+.+++....+|..--..+.....+|..+..+
T Consensus 242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~ 274 (880)
T PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKE 274 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555544433343344443333333
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.66 E-value=45 Score=34.96 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAID-------ELKEAQRVAEEANEKLQEALMA 160 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~-------ELE~AKr~ieeL~~KLE~a~~~ 160 (313)
....++..+..+++.|..+-+.++.-..+|..|.. .|..++.....|...++..+.+
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566666666666666666666666555554 4555555555555555555433
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.44 E-value=49 Score=35.23 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN 167 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~ 167 (313)
.+.++++.+++.++-.++.+-+.+.-.-..-.+.-.+|..++.++++-..---+.+..-+-..+.
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45577777777777777777777777777777777777777776666554333333333333333
No 81
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.26 E-value=5.7 Score=30.94 Aligned_cols=56 Identities=23% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 209 ASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 209 AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~ 271 (313)
..|+++...+......+..+..+++.++.+..+|. .....|..|+.+++..|+..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~-------~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY-------EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 34566667777777788888888888888887776 455668888888888877654
No 82
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.23 E-value=27 Score=32.07 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT--------TDAKNQALSHADDATKIAELHVEKVEILSSELTR 262 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~--------~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~ 262 (313)
..|+..|-..+.++-.....|.-+-.||.+++.++..+ +.+++.-..+-+.+......+..++..|...|.-
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887777777777777666542 2233333444555555566666777777665555
Q ss_pred HHHHhhhhHhhhh---hhhHHHHHHHHHHHHHHHHHHH
Q 039546 263 LKALLDSQRETES---IKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 263 lKe~Les~~~~e~---~~~~e~~~~le~e~~~L~~el~ 297 (313)
....+.--...+. .++-..+..|..||..|++.|.
T Consensus 151 ~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 151 ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333332 2333567777777777777664
No 83
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.90 E-value=77 Score=36.94 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEK 153 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~K 153 (313)
.|...+|.+++.+-+++...+..|..+..++-.-++.++++..+
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777788887787777777766655444444444444333
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.59 E-value=47 Score=34.27 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN 167 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~ 167 (313)
.+|+++|.||.+....+........+...+|...+..+..+.+.|-+....-.....+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5666777777777666666666667777777777766666666666655444443333
No 85
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.29 E-value=57 Score=34.92 Aligned_cols=33 Identities=6% Similarity=0.172 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
.++.....+|...--.+..++.+|..++.++..
T Consensus 302 ~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 302 ATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555566667777777766644
No 86
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.20 E-value=26 Score=34.84 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIE------------KEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKF 173 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE------------~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~ 173 (313)
.+|...|.-+|.|++-+++++..-. ..|.+.+..||.++.++..|...|.....+..-++..-...+.
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777888887888776643 4678899999999999999999999999999888888888887
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546 174 RAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQ 234 (313)
Q Consensus 174 Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~a 234 (313)
.+.-|-+ ||..+=.-+..-+.++++.-.|-+-|+..+..+-++++.
T Consensus 169 K~~RLN~---------------ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 169 KAHRLNH---------------ELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHH---------------HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766533 222222223334445555566666666655555555544
No 87
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.04 E-value=0.27 Score=53.74 Aligned_cols=52 Identities=37% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIEL--------IEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~--------AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.+++.+|..++.+|..+|.+++. .|..|.+...+|..+...++++..+....
T Consensus 288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~L 347 (859)
T PF01576_consen 288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSL 347 (859)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544443332 34444444444444444444444444333
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.92 E-value=12 Score=33.64 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546 197 IEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA 231 (313)
Q Consensus 197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a 231 (313)
++.++..|.+--..+.++-+.+.+|+.|...+|+-
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555777777777777776653
No 89
>PRK11281 hypothetical protein; Provisional
Probab=84.69 E-value=82 Score=36.26 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQ 144 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AK 144 (313)
+....++++..++.++..+...-.++..+|+.-|
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4444555555555555555555555555555433
No 90
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=84.68 E-value=63 Score=34.94 Aligned_cols=89 Identities=24% Similarity=0.393 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH-HHHH-HHH-HHHHHHHHHHHHHHhhhhHhhhhhh--hH-HHHHHHHH
Q 039546 214 TTQELQRIKQELAMTTDAKNQALSHADDATKI-AELH-VEK-VEILSSELTRLKALLDSQRETESIK--NR-ELVLKLEE 287 (313)
Q Consensus 214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~a-ae~~-~eK-veeLt~EL~~lKe~Les~~~~e~~~--~~-e~~~~le~ 287 (313)
+-.|...|+.++..+......+ +.++-... ...+ .++ +-.|+.+|.+++.++--..++-... +. ..+...-+
T Consensus 254 lE~e~e~L~~ql~~~N~~~~~~--~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~ 331 (629)
T KOG0963|consen 254 LEREVEQLREQLAKANSSKKLA--KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKIS 331 (629)
T ss_pred HHHHHHHHHHHHHhhhhhhhhc--cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555554444 11111111 1111 122 5557777777777766555322211 11 12233334
Q ss_pred HHHHHHHHHHhhhhHhH
Q 039546 288 EIDTLKEELEKSRTFGK 304 (313)
Q Consensus 288 e~~~L~~el~ka~~~e~ 304 (313)
++..|+.+|++-.++++
T Consensus 332 ~leel~~kL~~~sDYee 348 (629)
T KOG0963|consen 332 ELEELKEKLNSRSDYEE 348 (629)
T ss_pred HHHHHHHHHhhhccHHH
Confidence 44455555555555543
No 91
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.32 E-value=30 Score=30.83 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039546 280 ELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~ 300 (313)
++-.++..+|..||.+|++.|
T Consensus 131 e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 131 ELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888887765
No 92
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.21 E-value=54 Score=33.72 Aligned_cols=92 Identities=15% Similarity=0.285 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546 109 QAQLNLVQEDLKKAK-------EKIELIEKEKVQAIDELKEAQR-------VAEEANEKLQEALMAQKRAEENSEIEKFR 174 (313)
Q Consensus 109 E~QL~~~QeEL~k~K-------eQl~~AE~~KaqAl~ELE~AKr-------~ieeL~~KLE~a~~~q~qA~e~sEl~k~R 174 (313)
+++|+.+..=+..|| -+|..+|.-..+++.+||.-+. .=|||+.-|+.- +.|..+..|++...
T Consensus 85 ~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKE---ReqL~QQiEFe~~e 161 (561)
T KOG1103|consen 85 ESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKE---REQLQQQIEFEIEE 161 (561)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345555555555554 4788899999999999986442 236888888875 77777888887776
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039546 175 AVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASL 211 (313)
Q Consensus 175 a~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL 211 (313)
.+..|.+ + .-+..+|+.-+.||...+.-|
T Consensus 162 ~kK~E~~-----k---~Kl~~qLeeEk~RHeqis~mL 190 (561)
T KOG1103|consen 162 KKKAEIA-----K---DKLEMQLEEEKKRHEQISLML 190 (561)
T ss_pred HHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 2 236678899999998766544
No 93
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.07 E-value=33 Score=34.44 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQ 270 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~ 270 (313)
..|+.-|+.++..+......|.-++..|.+|..++...++.=..--++ -...++.|-.|....+..|...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~----------iN~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY----------INNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999998877642221111 1123444555555555555544
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 271 RETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 271 ~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
.+.=.. ...-|..+..++..+..+|+..|
T Consensus 286 ~~~y~~-~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 286 QEKYKQ-ASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence 432111 11334444444444545554443
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.02 E-value=81 Score=35.63 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 113 NLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 113 ~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
..++.-+..|+-|+..-+.+=.++..+++++.-..+-|...|
T Consensus 354 ~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~el 395 (980)
T KOG0980|consen 354 EEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNEL 395 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554444444333
No 95
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=83.65 E-value=6.2 Score=33.65 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=44.7
Q ss_pred cchhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQ--------EDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 103 ~~~~elE~QL~~~Q--------eEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
-++.+||.+|.+++ -+|.+||+.-...=..+.-.-..|.+++..+.+.+.||-.
T Consensus 7 lrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~ 68 (111)
T PF12001_consen 7 LRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLV 68 (111)
T ss_pred HHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46889999999887 6788998887777777777788999999999999988854
No 96
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=82.92 E-value=55 Score=32.86 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELH 249 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~ 249 (313)
..++++++.++..+..+-++|..+.+....-...+..........+..|..+...++.+
T Consensus 147 ~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~ 205 (352)
T COG1566 147 VVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLD 205 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Confidence 34678899999999888899988886666666666666666666666666666555543
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.89 E-value=33 Score=30.28 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD 230 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ 230 (313)
..+.++|+.++..+...+.+.-.++.|+..|+.++..+..
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~ 66 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTS 66 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777777776666655433
No 98
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=82.88 E-value=45 Score=31.81 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
.+++.+|..++..+..++.++........ ..+++.++..++.++..|+.+ +..-.|.+.|-+.+
T Consensus 77 ~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a-----------~~~~~r~~~L~~~g--- 140 (331)
T PRK03598 77 APYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYA-----------QNFYNRQQGLWKSR--- 140 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCC---
Confidence 56678888888888888888877654432 234555555555444444443 12223334442221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIK 222 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klr 222 (313)
..-+.+++.++..|..+.+.+..++..+..++
T Consensus 141 -----~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 141 -----TISANDLENARSSRDQAQATLKSAQDKLSQYR 172 (331)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345677777777777777777776666554
No 99
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.80 E-value=43 Score=31.61 Aligned_cols=49 Identities=31% Similarity=0.464 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
.+++.+|-++++++.+++..|..++..-...-.++..+......|..+-
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~ 56 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKR 56 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888887777655544444444444444444443
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.76 E-value=81 Score=34.70 Aligned_cols=154 Identities=16% Similarity=0.227 Sum_probs=97.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA 181 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~ 181 (313)
+.|-..+..+|..+|.||+.++-.+.+.-++.-+... ...+|....+.......+.+.+.-=.|||-..|=+.
T Consensus 26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~-------~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d 98 (717)
T PF09730_consen 26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQ-------LNQELRKECEDLELERKRLREEIKEYKFREARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455677788888888888888888776555544333 333333333333333333333222223332221111
Q ss_pred hhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 182 GIEASQKKEEEWQKEIEAVRN---QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSS 258 (313)
Q Consensus 182 ~~~~a~~~~~a~k~ELE~ar~---qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~ 258 (313)
+..-.+.+-.++..+-+.|. .|...--++..-.+|++-|+.+++.++.=|+++-+|-+||..+.+..-+.=..|..
T Consensus 99 -yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 99 -YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112223445555555444 46676777888888999999999999999999999999999998877777778899
Q ss_pred HHHHH
Q 039546 259 ELTRL 263 (313)
Q Consensus 259 EL~~l 263 (313)
||...
T Consensus 178 EL~~~ 182 (717)
T PF09730_consen 178 ELDQH 182 (717)
T ss_pred HHHHh
Confidence 98883
No 101
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=82.72 E-value=44 Score=31.61 Aligned_cols=28 Identities=4% Similarity=-0.079 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQ 219 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~ 219 (313)
.-+.+++.++.+|...-++|..+..++.
T Consensus 132 iS~~~~d~~~~~~~~a~~~l~~~~~~~~ 159 (327)
T TIGR02971 132 VSASDLDSKALKLRTAEEELEEALASRS 159 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555555544443
No 102
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.69 E-value=84 Score=34.83 Aligned_cols=158 Identities=25% Similarity=0.280 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQ-RVAE----EANEKLQEALMAQ-KRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AK-r~ie----eL~~KLE~a~~~q-~qA~e~sEl~k~Ra~ElEq 180 (313)
-++.++..+-.-|++|-+||-.+.-..-|-+.|.=--+ +..+ +|..+|.+....- ..+.+...+.+. +.+-+.
T Consensus 42 ~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~-l~~~~~ 120 (769)
T PF05911_consen 42 ALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKA-LQEKEK 120 (769)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence 34555666667788888888888877777666543222 1222 2333333331111 011111111110 011111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039546 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSEL 260 (313)
Q Consensus 181 ~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL 260 (313)
. |....+.-.....++.....+....--+-.+-+.||.-+.++|+.-.++++-..+-|+-|.+-=-...+||--|-.|-
T Consensus 121 ~-i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC 199 (769)
T PF05911_consen 121 L-IAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAEC 199 (769)
T ss_pred H-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122223344455555555555555555688888888888888888888888888888776667788888888887
Q ss_pred HHHHHH
Q 039546 261 TRLKAL 266 (313)
Q Consensus 261 ~~lKe~ 266 (313)
.||+..
T Consensus 200 ~rLr~l 205 (769)
T PF05911_consen 200 QRLRAL 205 (769)
T ss_pred HHHHHH
Confidence 666653
No 103
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.22 E-value=1.4e+02 Score=36.32 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
++.+|+..+..|...-+.=..+..|+..++++...
T Consensus 1420 l~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~ 1454 (1822)
T KOG4674|consen 1420 LKEELEELQQLQATLQSETEAITKELFEAKKEEEK 1454 (1822)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence 44555555555555555555555555555555555
No 104
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.00 E-value=1.1e+02 Score=35.11 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh------------h
Q 039546 119 LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA------------S 186 (313)
Q Consensus 119 L~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~------------a 186 (313)
++.+.+|+...+..+..++..|.+-+..|.+-..+|....-.-......-.--+.|+..+++...++ .
T Consensus 309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk 388 (1200)
T KOG0964|consen 309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK 388 (1200)
T ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
Confidence 4455566677777777788888888888888888777765444333443444455556665522111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 187 QKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL 266 (313)
Q Consensus 187 ~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~ 266 (313)
.++|.-.+.+++ .-...+...+.....|+.+|+.+-.....-+.+-.+=...-..+.-+|+++..+++.+|..
T Consensus 389 ~eRDkwir~ei~-------~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~ 461 (1200)
T KOG0964|consen 389 EERDKWIRSEIE-------KLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRE 461 (1200)
T ss_pred HHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence 334433344444 4445555666666677777666543333333333333333345666788888888888888
Q ss_pred hhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 267 LDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 267 Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
+|-..+.. +...-.=.+|...|..|+.+|..++.
T Consensus 462 ~del~~~R-k~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 462 LDELQDKR-KELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766433 33333456777777788877777654
No 105
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.54 E-value=52 Score=31.06 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR 163 (313)
Q Consensus 115 ~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~q 163 (313)
+..+...|.++|...+..-.++..+|..+..++..|-.++..++.+...
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~ 51 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEE 51 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788888888888888889999999999999888888665543
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.26 E-value=63 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHAL----DVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~----~~AeL~Sak~EL~klrqEl 225 (313)
..++.++...++.... |-.+|..++++|..+..++
T Consensus 182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei 220 (312)
T smart00787 182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI 220 (312)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555544333 3444555554444444433
No 107
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=79.65 E-value=24 Score=33.44 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRET 273 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~ 273 (313)
++|..++|.++.. .++||+++|++|-. .+.+.+++---+|+.|=.++++.- +.++.
T Consensus 115 ~sEF~~lr~e~Ek-------lkndlEk~ks~lr~----------------ei~~~~a~~rLdLNLEkgr~~d~~-~~~~l 170 (220)
T KOG3156|consen 115 RSEFANLRAENEK-------LKNDLEKLKSSLRH----------------EISKTTAEFRLDLNLEKGRIKDES-SSHDL 170 (220)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHH----------------HHHhcchhceeecchhhccccchh-hhcch
Confidence 4666677766666 88888998888842 223333343345666767777654 33333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 274 ESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 274 e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
.-. |+=-|+..|+..||-+|+.+|.
T Consensus 171 ~~~---e~s~kId~Ev~~lk~qi~s~K~ 195 (220)
T KOG3156|consen 171 QIK---EISTKIDQEVTNLKTQIESVKT 195 (220)
T ss_pred hHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3337888999999999988763
No 108
>PRK01156 chromosome segregation protein; Provisional
Probab=79.53 E-value=1e+02 Score=33.71 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKV 134 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~Ka 134 (313)
+.....+|..+.+++.+++..+...+..+.
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666655555554444433
No 109
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.98 E-value=32 Score=31.91 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
+...+|.||..++.+|.....++. ..+....+.+...+..+.+|....
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n 141 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEEN 141 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544433 223333333444444444444333
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.66 E-value=42 Score=28.82 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
....+..|..++..|..-.+... +++..-.+++..|+.++.--|.
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~L--------ellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLL--------ELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHhcchHHHHHHHHHHHHHHHH
Confidence 33456666677777666666555 4444444555555555544443
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.66 E-value=68 Score=31.24 Aligned_cols=10 Identities=30% Similarity=0.322 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 039546 284 KLEEEIDTLK 293 (313)
Q Consensus 284 ~le~e~~~L~ 293 (313)
++.++|..+.
T Consensus 255 ~l~~eI~e~~ 264 (325)
T PF08317_consen 255 ELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 112
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.24 E-value=82 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIE 127 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~ 127 (313)
.+++.++..++.++..+..++.
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444443
No 113
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.19 E-value=92 Score=32.50 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039546 136 AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG 182 (313)
Q Consensus 136 Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~ 182 (313)
.+.++..+.....++...|++.+..+....+..+..++++.|++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 44455555555555555555555555555555566666666666543
No 114
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=78.18 E-value=17 Score=39.24 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHH
Q 039546 211 LLSTTQELQRIKQELAMTTDAKNQALSHADDATKIA-ELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEI 289 (313)
Q Consensus 211 L~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aa-e~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~ 289 (313)
|.-.=.|.+.|=.+-.-+++-||+ ..+. ..-..||.+|+-|-.-|++.|++..-...+=. +.|.+||+||
T Consensus 296 llGMGrEVeNLilENsqLLetKNA--------LNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Kle-e~i~elEEEl 366 (832)
T KOG2077|consen 296 LLGMGREVENLILENSQLLETKNA--------LNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLE-EKIRELEEEL 366 (832)
T ss_pred hhcchHHHHHHHHhhHHHHhhhhH--------HHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334455666666666667777665 2222 22346799999999999999998876555444 6799999999
Q ss_pred HHHHHHHHhh
Q 039546 290 DTLKEELEKS 299 (313)
Q Consensus 290 ~~L~~el~ka 299 (313)
-.+|++++-|
T Consensus 367 k~~k~ea~~a 376 (832)
T KOG2077|consen 367 KKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 115
>PRK11281 hypothetical protein; Provisional
Probab=77.38 E-value=1.5e+02 Score=34.36 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=44.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
-.+..+++.+|..+|++|..+.-++....+.=.+|...+..+...+.+++..|..
T Consensus 127 Eq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455677778888888888888888888888888888888888888888877754
No 116
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.85 E-value=58 Score=30.24 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhh
Q 039546 256 LSSELTRLKALLDS 269 (313)
Q Consensus 256 Lt~EL~~lKe~Les 269 (313)
|..+...|++.|..
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 117
>PRK01156 chromosome segregation protein; Provisional
Probab=76.78 E-value=1.2e+02 Score=33.12 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039546 208 VASLLSTTQELQRIKQEL 225 (313)
Q Consensus 208 ~AeL~Sak~EL~klrqEl 225 (313)
-..+.-...++..++.++
T Consensus 642 ~~~i~~~~~~i~~l~~~i 659 (895)
T PRK01156 642 KILIEKLRGKIDNYKKQI 659 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 118
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=76.77 E-value=0.79 Score=48.87 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHhhhhhc
Q 039546 282 VLKLEEEIDTLKEELEKSRTFGKKINGKR 310 (313)
Q Consensus 282 ~~~le~e~~~L~~el~ka~~~e~k~~~~e 310 (313)
+.=|++|+..|+.+|+.+..++.++.+++
T Consensus 283 ~elLeEe~~sLq~kl~~~E~~~~el~~lq 311 (722)
T PF05557_consen 283 VELLEEEKRSLQRKLERLEELEEELAELQ 311 (722)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467778888888888888877777664
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=75.76 E-value=1.7e+02 Score=34.32 Aligned_cols=15 Identities=47% Similarity=0.815 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 039546 280 ELVLKLEEEIDTLKE 294 (313)
Q Consensus 280 e~~~~le~e~~~L~~ 294 (313)
+++..|+++|+.|..
T Consensus 623 e~~~~l~~~i~sL~~ 637 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEE 637 (1317)
T ss_pred HHHHHHHhHHHHHHH
Confidence 344444444444433
No 120
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.66 E-value=93 Score=31.28 Aligned_cols=130 Identities=16% Similarity=0.262 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 039546 120 KKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEA 199 (313)
Q Consensus 120 ~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ 199 (313)
+..+-+++....-+..+-.-+..++..++-|...+..+ +++.... +.-...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~------------lekI~sR-------------Ek~iN~---- 266 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT------------LEKIESR-------------EKYINN---- 266 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------------HHHHHHH-------------HHHHHH----
Confidence 35566666666666666666666666666665555443 1221111 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhh---
Q 039546 200 VRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESI--- 276 (313)
Q Consensus 200 ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~--- 276 (313)
|+...+.++..+..+|..++..|..+ -..+ ..-..-..+++.+|..+|..++....+=.-
T Consensus 267 ---qle~l~~eYr~~~~~ls~~~~~y~~~-----------s~~V---~~~t~~L~~IseeLe~vK~emeerg~~mtD~sP 329 (359)
T PF10498_consen 267 ---QLEPLIQEYRSAQDELSEVQEKYKQA-----------SEGV---SERTRELAEISEELEQVKQEMEERGSSMTDGSP 329 (359)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 44444445555667777777776432 1111 122233445666777777777665442221
Q ss_pred --hhHHHHHHHHHHHHHHHHH
Q 039546 277 --KNRELVLKLEEEIDTLKEE 295 (313)
Q Consensus 277 --~~~e~~~~le~e~~~L~~e 295 (313)
.--..|.+|..||..+...
T Consensus 330 lv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 1114577888888766543
No 121
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.73 E-value=75 Score=29.75 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=96.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGI 183 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~ 183 (313)
++..++.+|..+..|+..++++...+-..=-++..+.+.+...+.+|..........=...++....-.. ....+..
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~---~~~~~~~ 122 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE---NGDQLPS 122 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---ccCCCCH
Confidence 5678888899999999999999999888888899999999999999888888775443333332211111 0001111
Q ss_pred hhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 184 EASQKKEEEWQKEIEAVRN-----QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSS 258 (313)
Q Consensus 184 ~~a~~~~~a~k~ELE~ar~-----qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~ 258 (313)
......=...+.=|+.+|. ++..+-.+|..|..=|.+++..|..-...-. ...+.....+.+.+.
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~----------~l~~~i~~~L~~~~~ 192 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENE----------SLAEAIRDDLNDYNA 192 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhH----------HHHHHHHHHHHHHHH
Confidence 1111222334445555544 3666777777777777777777643322211 122334455666677
Q ss_pred HHHHHHHHhhhhHh
Q 039546 259 ELTRLKALLDSQRE 272 (313)
Q Consensus 259 EL~~lKe~Les~~~ 272 (313)
.|..|++.|+.+.+
T Consensus 193 kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 193 KLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777665
No 122
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.73 E-value=52 Score=27.93 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE 152 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~ 152 (313)
++..++.++..++.+...++..-..+..||+.-...+.++..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~ 45 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQ 45 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443333333333
No 123
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=73.20 E-value=76 Score=29.13 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 039546 196 EIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETES 275 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~ 275 (313)
.|..++.-.+..++.-.....++..+....+..-.---.|+++-+|.. |...-.+.......+..++.+++...
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdL--Ar~Al~~k~~~~~~~~~l~~~~~~~~---- 112 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDL--ARAALIEKQKAQELAEALERELAAVE---- 112 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344455455555555555555555555555554444445555444433 33333333444444444544444422
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 039546 276 IKNRELVLKLEEEIDTLKEELEKSRTFGK 304 (313)
Q Consensus 276 ~~~~e~~~~le~e~~~L~~el~ka~~~e~ 304 (313)
..|.+|+..+..|+.+|+.++.-+.
T Consensus 113 ----~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 113 ----ETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665554433
No 124
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.70 E-value=78 Score=29.04 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHH
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELV 282 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~ 282 (313)
.|--++..|.+--++|=.++.++...++.+.-.-++..+....-.....++.+|-..|..|++............. ..|
T Consensus 83 ~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-~ei 161 (190)
T PF05266_consen 83 EHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD-KEI 161 (190)
T ss_pred HcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4777777788888888888888887777766655554444222233455566777777777776544443222222 568
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 039546 283 LKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 283 ~~le~e~~~L~~el~ka~~ 301 (313)
..|+++++.|+.++..++.
T Consensus 162 ~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 162 SRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988764
No 125
>PRK11020 hypothetical protein; Provisional
Probab=72.50 E-value=28 Score=30.14 Aligned_cols=63 Identities=27% Similarity=0.325 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhh
Q 039546 213 STTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIK 277 (313)
Q Consensus 213 Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~ 277 (313)
+.++||++|...||. +.-|.+++..-.++..+++ ...-++.|+.+|.+||..-....-.+++.
T Consensus 2 ~~K~Eiq~L~drLD~-~~~Klaaa~~rgd~~~i~q-f~~E~~~l~k~I~~lk~~~~~~lske~~~ 64 (118)
T PRK11020 2 VEKNEIKRLSDRLDA-IRHKLAAASLRGDAEKYAQ-FEKEKATLEAEIARLKEVQSQKLSKEAQK 64 (118)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999975 5566666666677776774 55668889999999998766665544433
No 126
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.39 E-value=1.9e+02 Score=33.40 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=22.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039546 101 RLVKGSELQAQLNLVQEDLKKAKEKIELI 129 (313)
Q Consensus 101 r~~~~~elE~QL~~~QeEL~k~KeQl~~A 129 (313)
++.+-.+|..+|.-+.+-|..+..+++.-
T Consensus 168 ~~~~~~hL~velAdle~kir~LrqElEEK 196 (1195)
T KOG4643|consen 168 VVKKNLHLEVELADLEKKIRTLRQELEEK 196 (1195)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999988888888888887653
No 127
>PRK12472 hypothetical protein; Provisional
Probab=72.07 E-value=1.3e+02 Score=31.87 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEAS 186 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a 186 (313)
+.-.--.....|+..++..|..+|..|+++-.||..|-|.+......=..+. +.+.++. +
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~----------------a~~~~~~----~ 267 (508)
T PRK12472 208 EAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKAR----------------AEERQQK----A 267 (508)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh----------------HHHHHHH----H
Confidence 3333445667788888999999999999999999999888877654433332 2222221 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 187 QKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRI 221 (313)
Q Consensus 187 ~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~kl 221 (313)
.-.-.....+|+.++..-+...+++.+++++....
T Consensus 268 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a 302 (508)
T PRK12472 268 AQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAA 302 (508)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11123456778888877777777777776655443
No 128
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.39 E-value=79 Score=28.56 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETE 274 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e 274 (313)
..|.-++...+..++.-.....++..+..+....-.--..|+.+-++-. |.....+...+...+..++..++......
T Consensus 37 ~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL--Ar~al~~k~~~e~~~~~l~~~~~~~~~~~ 114 (221)
T PF04012_consen 37 EQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL--AREALQRKADLEEQAERLEQQLDQAEAQV 114 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555444444444444444333 55556666777777788887777666333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 039546 275 SIKNRELVLKLEEEIDTLKEEL 296 (313)
Q Consensus 275 ~~~~~e~~~~le~e~~~L~~el 296 (313)
..=. .-+.+|+..|..++.+.
T Consensus 115 ~~l~-~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 115 EKLK-EQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH
Confidence 2211 22444444444444443
No 129
>PRK10698 phage shock protein PspA; Provisional
Probab=71.20 E-value=89 Score=29.07 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 109 QAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEAL 158 (313)
Q Consensus 109 E~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~ 158 (313)
..=+-.++++|.+++..+...-+.+.+.-..++.+...+++...+-+.|.
T Consensus 30 ~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al 79 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELAL 79 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677778888888888888899999999999999998887776664
No 130
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=70.73 E-value=94 Score=29.16 Aligned_cols=134 Identities=24% Similarity=0.295 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 039546 123 KEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRN 202 (313)
Q Consensus 123 KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~ 202 (313)
|-||..+-+.=.+=..|+=.-|-.+-+++.+|+... .+..........+-.|+|. |. ..-.-.+.+.+..++
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~---~~~~~l~~~~~~K~~ELE~--ce---~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE---SQIQELQDSLRTKQLELEV--CE---NELQRKKNEAELLRE 87 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhHhHHH--hH---HHHHHHhCHHHHhhh
Confidence 333333434434445566666667777777776652 2222222333333344443 11 000011122222332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQ--ALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~a--A~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~ 271 (313)
. +.....||..|+..+..+...+.. -+...++|...-.....-+..|..++.+|+..|-..+
T Consensus 88 k-------l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 88 K-------LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRER 151 (202)
T ss_pred h-------hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence 2 344566777777777776211111 1123333321111112235556667777776666554
No 131
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.63 E-value=1.6e+02 Score=31.66 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 039546 146 VAEEANEKLQEA 157 (313)
Q Consensus 146 ~ieeL~~KLE~a 157 (313)
++.++..+|+.+
T Consensus 202 ql~~l~~~l~~a 213 (754)
T TIGR01005 202 EIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 132
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=69.67 E-value=31 Score=34.05 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
-+.+++.++.+|..+-+.|..++..|+..+..++
T Consensus 139 s~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~ 172 (397)
T PRK15030 139 SKQEYDQALADAQQANAAVTAAKAAVETARINLA 172 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567777777887777788888888777776664
No 133
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=1.8e+02 Score=32.00 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 039546 280 ELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~~~ 302 (313)
...+.|++|+..|+.+|+.-+.-
T Consensus 601 ~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 601 FKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45688999999999999876543
No 134
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.40 E-value=1.2e+02 Score=29.94 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hh
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE----------------EN 167 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~----------------e~ 167 (313)
.+.+++.+|..++..|..|+.+-...... +.++.....+.+|+..|..++.....+. .+
T Consensus 179 ql~~~~~~l~~ae~~l~~fr~~~~i~~~~-----~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
T TIGR03017 179 QIAALREDLARAQSKLSAYQQEKGIVSSD-----ERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIAN 253 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccC-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcC
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 039546 168 SEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAE 247 (313)
Q Consensus 168 sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae 247 (313)
.-+..++.+- ...+.+|...+.+|...-=.+...+.+|..++.++.. +.-....
T Consensus 254 ~~i~~l~~~l-------------~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~-------------e~~~~~~ 307 (444)
T TIGR03017 254 PIIQNLKTDI-------------ARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA-------------EIKKVTS 307 (444)
T ss_pred hHHHHHHHHH-------------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 248 LHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 248 ~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
......+.+...+..+...|+... ... ..+...+.+...|..+++-++..
T Consensus 308 ~~~~~~~~~~~~~~~l~~~l~~~~----~~~-~~l~~~~~~~~~L~r~~~~~~~~ 357 (444)
T TIGR03017 308 SVGTNSRILKQREAELREALENQK----AKV-LELNRQRDEMSVLQRDVENAQRA 357 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHH
No 135
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=68.93 E-value=97 Score=28.62 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRV------------AEEANEKLQEALMAQKRAEENSEIEKFRAVE 177 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~------------ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E 177 (313)
+....++++..|+..+..+-..-..+..+|..-+.. +++|...|...+..-..+..+.--...++..
T Consensus 32 ~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 32 EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777666666676666554 5555555555544444444444333333333
No 136
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.88 E-value=1e+02 Score=28.82 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALL------ 267 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~L------ 267 (313)
+.-+-...+++....+...-...|-+.|-.+...+-++...-... .+.-..+..+|..+-..|+..|
T Consensus 73 k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e-------~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 73 KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAE-------RDGLKKRSKELATEKATLQRQLCEFESL 145 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-------hhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333344444555555544444444444444444443333322211 1122234555655666666544
Q ss_pred hhhHhhhhhhhHHHHHHHH---HHHHHHHHHH
Q 039546 268 DSQRETESIKNRELVLKLE---EEIDTLKEEL 296 (313)
Q Consensus 268 es~~~~e~~~~~e~~~~le---~e~~~L~~el 296 (313)
-+.+++..++..-.+..|. +|+..+..+|
T Consensus 146 ~~~~da~l~e~t~~i~eL~~~ieEy~~~teeL 177 (193)
T PF14662_consen 146 ICQRDAILSERTQQIEELKKTIEEYRSITEEL 177 (193)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2333344444444455555 5555555555
No 137
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.25 E-value=2.2e+02 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 039546 276 IKNRELVLKLEEEIDTLKEELEKS 299 (313)
Q Consensus 276 ~~~~e~~~~le~e~~~L~~el~ka 299 (313)
.+.++++..|+.|...|-.++++.
T Consensus 490 e~~~~~le~l~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIELEEL 513 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555443
No 138
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.19 E-value=1.9e+02 Score=31.68 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEE 295 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~e 295 (313)
--.|..+|-.||-.|+-.|...- +.+..||.|+..|+.-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~ke--------e~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKE--------EQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 34567888889988888877665 4455566666555543
No 139
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=68.19 E-value=99 Score=28.40 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHhh
Q 039546 188 KKEEEWQKEIEAVRNQHALDVASLLSTTQ-------ELQRIKQELAMTTDAKNQALS 237 (313)
Q Consensus 188 ~~~~a~k~ELE~ar~qha~~~AeL~Sak~-------EL~klrqEl~~~~~ak~aA~~ 237 (313)
-++.-+...|..+..+...--+.|..+.. -+..+...++.++++||..|.
T Consensus 143 ~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 143 LKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666655555555554443 355666777777777776654
No 140
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.53 E-value=1.4e+02 Score=30.11 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH-HHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEK----------------------------EKVQAID-ELKEAQRVAEEANEK 153 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~----------------------------~KaqAl~-ELE~AKr~ieeL~~K 153 (313)
.....++.++..++.++..++.++...+. .|..+-. ++......+..+...
T Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 251 (457)
T TIGR01000 172 KTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKS 251 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHH-----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 154 LQEALMAQKRAEENSEI-----EKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRI 221 (313)
Q Consensus 154 LE~a~~~q~qA~e~sEl-----~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~kl 221 (313)
+..++.....+....-. .+.|...+.. .....+..+|+.++.+....-+.|..+...|...
T Consensus 252 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 252 IASYQVQKAGLTKSTASNYASSQNSKLAQLKE-------QQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHhhccCCccchhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 141
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.81 E-value=1.3e+02 Score=29.39 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~ 151 (313)
..+++.+|..+++|-..+..+|...|.++.++..|+..-+...+++.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777666554444443
No 142
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=66.69 E-value=38 Score=33.11 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
-+.+|+.++.+|..+-+.|.+++..|..++.+++
T Consensus 137 S~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~ 170 (385)
T PRK09578 137 SERDYTEAVADERQAKAAVASAKAELARAQLQLD 170 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788888888888888888888887777664
No 143
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.60 E-value=1.4e+02 Score=29.65 Aligned_cols=119 Identities=19% Similarity=0.326 Sum_probs=73.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--H
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQA----IDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRA--V 176 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqA----l~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra--~ 176 (313)
.|+..||.+-..+..|...++......|--=.+. +.+|..|...|..|+..|.. ..+....+.-|+..+.. .
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~--k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELAR--KTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777765544444332222 36788899999888887754 33445555555555433 2
Q ss_pred HHHHhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 177 EMEQAG-------------IEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223 (313)
Q Consensus 177 ElEq~~-------------~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrq 223 (313)
.+++-. ..++.+....+..||.-.+.+|+-..+-|..+.+||..+|.
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 222210 11233444556777778888888888888888888887764
No 144
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=66.47 E-value=1e+02 Score=28.01 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Q 039546 199 AVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKN 278 (313)
Q Consensus 199 ~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~ 278 (313)
..+..+.....++.....++..++..++.+...+...-.+ ...-.+.+.|..++..|+..|.... .-.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR--------~~~l~~l~~l~~~~~~l~~el~~~~----~~D 133 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER--------EELLEELEELKKELKELKKELEKYS----END 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH----hcC
Confidence 4444556666666667777777777777665444443111 1234567778888888888888444 223
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039546 279 RELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 279 ~e~~~~le~e~~~L~~el~k 298 (313)
-+.|.++..++..++..+..
T Consensus 134 p~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677777777776665543
No 145
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.29 E-value=52 Score=32.22 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 039546 109 QAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQK 188 (313)
Q Consensus 109 E~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~ 188 (313)
...|..++++|.++..+|. ....+|......+..|...++.+..++.+.....+..+.|+.--+.--.+.+.+
T Consensus 220 ~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 3445555555555555544 333455555666677777777776666666666666666655544432223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 039546 189 KEEEWQKEIEAVRNQHALDVASL 211 (313)
Q Consensus 189 ~~~a~k~ELE~ar~qha~~~AeL 211 (313)
..-|...++....++...+-+.
T Consensus 293 -~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 293 -KERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp -HHCCHCHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHhcccHHHH
Confidence 3458888887777766655443
No 146
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.23 E-value=2.1e+02 Score=31.51 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039546 134 VQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 134 aqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
..++.+|+.-++.+++....++.
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 147
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=65.16 E-value=2.3e+02 Score=31.49 Aligned_cols=186 Identities=22% Similarity=0.299 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG--- 182 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~--- 182 (313)
.+.+..+.-+.-+|.+.++++..-+-.+..-..-|..++...+-|...|+++..+-+...... +.--.+++.+.
T Consensus 250 ~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq---~~le~~lq~~~k~~ 326 (786)
T PF05483_consen 250 KEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQ---KALEEDLQQATKTL 326 (786)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 334444555666677777777777777777777778888888888888887755443322221 11112233221
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhh---HHHHHHHhhhhHHHHHHHHH
Q 039546 183 IEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRI-----------KQELAMT---TDAKNQALSHADDATKIAEL 248 (313)
Q Consensus 183 ~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~kl-----------rqEl~~~---~~ak~aA~~~AeeA~~aae~ 248 (313)
+...++. .+-=.++.-++.+|+.++++|..+...|+.+ ..+|-.+ +..|++ .-++.......
T Consensus 327 ~qlt~eK-e~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~---eleEmtk~k~~ 402 (786)
T PF05483_consen 327 IQLTEEK-EAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSS---ELEEMTKQKNN 402 (786)
T ss_pred HHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH---HHHHHHHHhhh
Confidence 2223333 3455788889999999999999988877643 1122222 222222 22334433334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhh---------hHHHHHHHHHHHHHHHHHHHh
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIK---------NRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~---------~~e~~~~le~e~~~L~~el~k 298 (313)
..-.+++|...|..-...|+...-.+.+. -..++.-.+.++..|...|--
T Consensus 403 ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~ 461 (786)
T PF05483_consen 403 KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTT 461 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44447777777776666666555433322 112344445555555555443
No 148
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.83 E-value=56 Score=25.10 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~ 151 (313)
.++.+|.+++...-.+..+|..+|.-......+++.=+..++++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666667777777777777777666666666554
No 149
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=64.35 E-value=1.8e+02 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039546 280 ELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~ 300 (313)
..+..|..|-..|...||+..
T Consensus 406 ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 406 TQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred HHHHHHHhhhhhccccHHHHH
Confidence 345577778888888887765
No 150
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.12 E-value=1.6e+02 Score=29.40 Aligned_cols=132 Identities=23% Similarity=0.195 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 146 VAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 146 ~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
.+++|+.+|.+++..=+-.++ -+++.|+.-+..+.+...++ ...|=.+||.++.++..---+|.++.+|.+.+..|.
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~--~la~~r~~~~~~~~~~~~~e-re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLRE--KLARQRVGDEGIGARHFPHE-REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHH--HHHhhhhhhccccccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666544333332 24444554444443333333 345667777777777777777777777777766665
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 226 AMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL-------LDSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 226 ~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~-------Les~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
+ ....|+.-|+.||.-+=.- +|.-. -|-.=-.+.|.++++|.+.++.-|-|
T Consensus 164 D---------------------~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi-~ENRyL~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 164 D---------------------AYKCKAHRLNHELNYILNGDENRIVDIDALI-MENRYLKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred H---------------------HHHHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3457788888888665332 11111 12222347899999999999998888
Q ss_pred hhhH
Q 039546 299 SRTF 302 (313)
Q Consensus 299 a~~~ 302 (313)
-+.+
T Consensus 222 YK~~ 225 (319)
T PF09789_consen 222 YKSA 225 (319)
T ss_pred HHHH
Confidence 7765
No 151
>PRK10698 phage shock protein PspA; Provisional
Probab=63.58 E-value=1.3e+02 Score=28.05 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhH
Q 039546 200 VRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNR 279 (313)
Q Consensus 200 ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~ 279 (313)
++.-.+..++.-.....++..+....+..-.---.|+++-++.. |...-.+-......+..|+..++...
T Consensus 43 ~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdL--Ar~AL~~K~~~~~~~~~l~~~~~~~~-------- 112 (222)
T PRK10698 43 VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDL--ARAALIEKQKLTDLIATLEHEVTLVD-------- 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34444444444444444444444444444333334444333322 22211111122233444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 039546 280 ELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~~ 301 (313)
..+.+|...+..|+.+|..++.
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555543
No 152
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=63.53 E-value=2.3 Score=45.39 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHhhhhhhhHHHHHHHHH
Q 039546 211 LLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILS---SELTRLKALLDSQRETESIKNRELVLKLEE 287 (313)
Q Consensus 211 L~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt---~EL~~lKe~Les~~~~e~~~~~e~~~~le~ 287 (313)
+.-.+.+|+.+++++...-+.++-.-.+++.-......--.++++|. .+...+|+.||--+ ..++.+.+|+.
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR-----~~a~r~~klE~ 315 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELR-----EKADRADKLEN 315 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHH
Confidence 44567778888887766544444433333332211111122244444 36667777777665 34577999999
Q ss_pred HHHHHHHHHHhhhhHhHhhhhhcc
Q 039546 288 EIDTLKEELEKSRTFGKKINGKRS 311 (313)
Q Consensus 288 e~~~L~~el~ka~~~e~k~~~~e~ 311 (313)
++..+|.+|+....|+.++.+++.
T Consensus 316 ~ve~YKkKLed~~~lk~qvk~Lee 339 (713)
T PF05622_consen 316 EVEKYKKKLEDLEDLKRQVKELEE 339 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 153
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.51 E-value=1.3e+02 Score=28.29 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKE 190 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~ 190 (313)
=..-++...+++.+.....-.....+++||+.+|+.-..+...-+.|..--+.|..+..--.-.. . ...+..+. .
T Consensus 104 l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~-~---~~~~~~~~-~ 178 (241)
T cd07656 104 MSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSP-E---KKLERSRS-S 178 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-c---cchhHHHH-H
Confidence 34456777788899999999999999999999999998887655555332222222211000000 0 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQA 235 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA 235 (313)
.-.+...+-++.+|.. ....+.+.|.+|-..+.+-|+.
T Consensus 179 ~~~~~~~eK~k~k~~~-------~~~k~~~akNeYll~l~~aN~~ 216 (241)
T cd07656 179 KKIEKEVEKRQAKYSE-------AKLKCTKARNEYLLNLAAANAT 216 (241)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0123444555555555 5566677778887766665553
No 154
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.05 E-value=1.1e+02 Score=27.06 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~ 165 (313)
...+.+-+.++.-+-.+-..|+.++..+..+.-|++.+|+.|..|...|+..-....+..
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666777777778888888888888888887777655544444
No 155
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=62.75 E-value=2.3e+02 Score=30.66 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 215 TQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQ 270 (313)
Q Consensus 215 k~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~ 270 (313)
|+.|..++.-|-.+-..+..=...-......-+.-..|..+|..+|..|++-|+.+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555544421111111122223344456666666677777766655
No 156
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=62.60 E-value=2e+02 Score=29.91 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 039546 252 KVEILSSELTRLKALLDSQ 270 (313)
Q Consensus 252 KveeLt~EL~~lKe~Les~ 270 (313)
++..|..=+..|+..|++.
T Consensus 406 ~~~~l~~a~~~l~~~l~~~ 424 (582)
T PF09731_consen 406 RAQQLWLAVDALKSALDSG 424 (582)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3333444444444444443
No 157
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=62.48 E-value=1e+02 Score=32.73 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKE 190 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~ 190 (313)
.+.+++.+|+...+.|.- ...+...+.++.++.+++...+......+--+ .++.+.-+.|+.+++++.|....+-
T Consensus 140 ~~~~~~~~lp~~~eil~~---~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i- 214 (555)
T TIGR03545 140 ELKKVDSQLPDPRALLKG---EDLKTVETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLEL- 214 (555)
T ss_pred hhccccccCCCHHHHhcc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHH-
Confidence 455556666666655542 33555566666666666666666554222211 5566677778888877654432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
...+.+++.++.+-..+.....+.+++|+..+.++.
T Consensus 215 ~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 215 QKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 234456666666666666666666666665555443
No 158
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=62.25 E-value=51 Score=32.32 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
+.+++.++.+|..+-+.|..++..|..++..|+
T Consensus 136 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~ 168 (385)
T PRK09859 136 RQDYDTARTQLNEAEANVTVAKAAVEQATINLQ 168 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456777777777777777777777777776664
No 159
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=62.20 E-value=2e+02 Score=29.95 Aligned_cols=69 Identities=10% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElE 179 (313)
+|..+-+|-.-+..++..+-..+.++++||-...++..+|...|...-+...+++.........-++|+
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555555555554444444444444333334443
No 160
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=61.52 E-value=2.3e+02 Score=31.77 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTT 229 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~ 229 (313)
+-++++.+++||...--+=+.-...++.|+++++.+.
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555555544444444445555555555444
No 161
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=61.13 E-value=1.6e+02 Score=28.33 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
...+.+.+|..++..|..++.++......-..+..++..++..++.++..+++.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~ 140 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERL 140 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555554444444444455555555555555555553
No 162
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.68 E-value=2.2e+02 Score=29.84 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLST-TQELQRIKQELAMTTDAKNQALSHADDATKIA 246 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sa-k~EL~klrqEl~~~~~ak~aA~~~AeeA~~aa 246 (313)
...=+..+-+-|...+.+|.-- ..||++|+++-+.++.+.-+|.--|=+|++-+
T Consensus 339 CERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnA 393 (593)
T KOG4807|consen 339 CERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNA 393 (593)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 3444555666666666666543 46999999999999999998888887877443
No 163
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=60.21 E-value=2.5e+02 Score=30.26 Aligned_cols=181 Identities=24% Similarity=0.292 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
-.+..+++.+.+.|.+....+..-|-..+ -.+|....--|+.|..-|+.-=.+++-....+-.=. .-|++
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~Leld~a--eeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~---~~l~k----- 320 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQLELDEA--EEELGLIQEKIESLYDLLEREVEAKNVVEENLPILP---DYLEK----- 320 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH---HHHHH-----
Confidence 45667777888888777777766665543 356666777788888878775444444433332222 22233
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVASLLSTT---QELQRIKQELAMTTDAKN---QALSHADDATKIAELHVEKVEILSSE 259 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak---~EL~klrqEl~~~~~ak~---aA~~~AeeA~~aae~~~eKveeLt~E 259 (313)
.-+.+..++.|++.+++-|-..-.+|..+. .+|+.+...|+.+.+-=. .+++-..+-+ +.-..-+.....+
T Consensus 321 ~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l---~~~~~~l~~i~~~ 397 (570)
T COG4477 321 AKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNL---EEIEKALTDIEDE 397 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH---HHHHHHHHHHhhh
Confidence 234467899999999999998888888776 578888877776654332 2333222222 2333335566678
Q ss_pred HHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 260 LTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 260 L~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
.+.+.+.|.+-+.-|. ++.+.+..+.+.+..++.-+++.+
T Consensus 398 q~~~~e~L~~LrkdEl-~Are~l~~~~~~l~eikR~mek~n 437 (570)
T COG4477 398 QEKVQEHLTSLRKDEL-EARENLERLKSKLHEIKRYMEKSN 437 (570)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888887765443 334667788888888888887764
No 164
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.68 E-value=2.8e+02 Score=30.65 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 116 QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.+=+..+++-+..-...=-.++.+|+.-++.+++....++..
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~ 542 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEAL 542 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555544444444
No 165
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.61 E-value=3.3e+02 Score=31.55 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039546 136 AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE 177 (313)
Q Consensus 136 Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E 177 (313)
.+..|+.+++-|++...+.+......+++.-+-..++.....
T Consensus 683 l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~ 724 (1200)
T KOG0964|consen 683 LQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEK 724 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444556666666666666666666666555555555444333
No 166
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=59.43 E-value=1.2e+02 Score=26.92 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 039546 114 LVQEDLKKAKEKI 126 (313)
Q Consensus 114 ~~QeEL~k~KeQl 126 (313)
.+.++++.++.||
T Consensus 24 ~~~~e~~~~k~ql 36 (155)
T PF06810_consen 24 KVKEERDNLKTQL 36 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 167
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.49 E-value=1.8e+02 Score=28.20 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhh
Q 039546 110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKK 189 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~ 189 (313)
.+|..++.||.+.++..+ ..+..=..+++.|+.++..++.+-.-..==-+ -++-++-++ |
T Consensus 63 ~~l~~ak~eLqe~eek~e----------~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK~vq-----I---- 122 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEE----------SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVKAVQ-----I---- 122 (258)
T ss_pred HHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHH-----H----
Confidence 456677777765554433 34455566777777777777543322110000 111111111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 190 EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH--ADDATKIAELHVEKVEILSSELTRLKALL 267 (313)
Q Consensus 190 ~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~--AeeA~~aae~~~eKveeLt~EL~~lKe~L 267 (313)
..+..+|+.++.+|....-+ ...-++.++..|..-...+...+-. ++.+.. -.-.-+-..+.+=..|+-.+
T Consensus 123 -a~L~rqlq~lk~~qqdElde---l~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~---~~~~~l~~~~~~N~~m~kei 195 (258)
T PF15397_consen 123 -ANLVRQLQQLKDSQQDELDE---LNEMRQMELASLSRKIQEKKEEILSSAAEKTQS---PMQPALLQRTLENQVMQKEI 195 (258)
T ss_pred -HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHH
Confidence 23667778787777764433 3444455555555555555544443 112221 12223444556666777777
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 268 DSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 268 es~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
+..+ +.|..|+.+|..|+.+.+
T Consensus 196 ~~~r--------e~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 196 VQFR--------EEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHH
Confidence 7666 445555555555555544
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.06 E-value=2.7e+02 Score=29.99 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
.+|+.+|+.+..++..+...+..-...-.++..|++..+....++...+
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555444444333
No 169
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.76 E-value=2.9e+02 Score=30.30 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~ 271 (313)
.+...|+-++.||..-.+++.-+..+|++|-.++..- .+.-..-..+. ..+--+++++|...|..|++.-..-.
T Consensus 107 ~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~---~~~~~~~~~D~---~dlsl~kLeelr~~L~~L~~ek~~Rl 180 (660)
T KOG4302|consen 107 SLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP---EDLPSFLIADE---SDLSLEKLEELREHLNELQKEKSDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccCCcccccCc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888888665 11111111111 12233677777777777777665555
No 170
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=56.96 E-value=3.6 Score=44.04 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEEL 296 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el 296 (313)
+..+|..|..+|........... .-......|.+||.++..|..+|
T Consensus 228 ~e~~i~~Le~el~~~~~~~~i~k--~l~~ql~~i~~LE~en~~l~~El 273 (722)
T PF05557_consen 228 AEQKIKELEAELKDQESDAEINK--ELKEQLAHIRELEKENRRLREEL 273 (722)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444433222111 11222334556666555555554
No 171
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=56.17 E-value=3.6e+02 Score=30.86 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEAS 186 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a 186 (313)
+++.||--+|.-+-..--++..-..+...+.++|..++-.+++++..|..- .++.-+-.-+=|+..+- .
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l----e~eLsAk~~eIf~~~~~-------L 171 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL----EDELSAKAHDIFMIGED-------L 171 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHhhhhHHHHHHHHH-------H
Confidence 334444444444444444444444555566677777777777777666552 11111111112222110 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546 187 QKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQ 234 (313)
Q Consensus 187 ~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~a 234 (313)
.. --.+|..-..||..-+++-..-+..|..+-++|...+.++|.
T Consensus 172 ~n----k~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~ 215 (1265)
T KOG0976|consen 172 HD----KNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQ 215 (1265)
T ss_pred hh----hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 11 113455566677777777777777777777777766655554
No 172
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=56.05 E-value=2e+02 Score=28.14 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHH-HHH-
Q 039546 211 LLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKL-EEE- 288 (313)
Q Consensus 211 L~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~l-e~e- 288 (313)
+...+++|+++..+|++++..--+-... .+..-++....-.|-..+-++|..-+ .+.-..+..+ ++-
T Consensus 87 ~~lgkeelqkl~~eLe~vLs~~q~Knek-------Lke~LerEq~wL~Eqqql~~sL~~r~----~elk~~~~~~se~rv 155 (268)
T PF11802_consen 87 LTLGKEELQKLISELEMVLSTVQSKNEK-------LKEDLEREQQWLDEQQQLLESLNKRH----EELKNQVETFSESRV 155 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccchHHH
Confidence 4678999999999999986543321111 11122222222223333333333333 1111111111 122
Q ss_pred HHHHHHHHHhhhhHhHhhh
Q 039546 289 IDTLKEELEKSRTFGKKIN 307 (313)
Q Consensus 289 ~~~L~~el~ka~~~e~k~~ 307 (313)
...|+.++.+++.+.++|-
T Consensus 156 ~~el~~K~~~~k~~~e~Ll 174 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLL 174 (268)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2577888888888877664
No 173
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.92 E-value=3e+02 Score=30.36 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 039546 276 IKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 276 ~~~~e~~~~le~e~~~L~~el~k 298 (313)
.++.+++.++..|+..+-.+|.+
T Consensus 568 ~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 568 KEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666555555543
No 174
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=55.58 E-value=3.9 Score=43.75 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039546 197 IEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS 269 (313)
Q Consensus 197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les 269 (313)
|++.-+.|-.=+-++.--+.++..|+.+...+++.+..- ++-..-+..-...++.+..+|..|+..++.
T Consensus 313 lE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L----Eeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 313 LENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML----EEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566667777777777777777776666554331 111111111223345555555555554444
No 175
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.38 E-value=91 Score=27.75 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQ 270 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~ 270 (313)
.+-+..++.+.+.|...++.|+ ++|..-+.||.+++..-+ --..||..|+.||..|+..|...
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LR---qqL~aKr~ELnALl~~~~--------------pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALR---QQLVSKRYEYNALLTANP--------------PDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888777764 566677777766543322 23456777888888888877766
Q ss_pred H
Q 039546 271 R 271 (313)
Q Consensus 271 ~ 271 (313)
+
T Consensus 109 r 109 (143)
T PRK11546 109 R 109 (143)
T ss_pred H
Confidence 6
No 176
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=55.31 E-value=48 Score=24.80 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 276 IKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 276 ~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
.++...|.+|+.|+..|+.+|+..+
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566889999999999999998654
No 177
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.00 E-value=1.7e+02 Score=26.85 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHhhHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE-----KLQEAL---MAQKRAEENSEIEKFRAVE 177 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~-----KLE~a~---~~q~qA~e~sEl~k~Ra~E 177 (313)
.....++.-+++.|.+++++....+..-...-.||..++..+.-|.. +|.+-. ..-..+..-.+...-++..
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777888888888888888888777777777777766655443 121110 0011112223344455556
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 178 MEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 178 lEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
|+.- ..=.+...+.+|.+-+..+..+..++.....|++.|++.+.
T Consensus 144 Lek~----leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 144 LEKQ----LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 12224567888888888888888899999999988887764
No 178
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=53.55 E-value=3.6e+02 Score=30.12 Aligned_cols=99 Identities=26% Similarity=0.237 Sum_probs=57.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 039546 103 VKGSELQAQLNLVQEDLKKAKE---K------IELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE------- 166 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~Ke---Q------l~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e------- 166 (313)
.+..+||.+|..+++++-|+|+ | -+..|.-|..+-.||-.|=. ...|+.||+..+.+=..|.-
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~-~~gLk~kL~~Lr~E~sKa~~~~~~~~~ 507 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVI-AMGLQERLENLREEFSKANSQDQLMHP 507 (762)
T ss_pred CCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhcccccccccH
Confidence 4568999999999999999972 1 14456666777777766643 45677777777644444421
Q ss_pred -hhH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 039546 167 -NSE-IEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHA 205 (313)
Q Consensus 167 -~sE-l~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha 205 (313)
.++ ++++. +|+-+.-..... ...++..|+..+.-+.
T Consensus 508 ~L~eK~~kLk-~Efnkkl~ea~n--~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 508 VLMEKIEKLK-DEFNKRLSRAPN--YLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHH-HHHHHhhhcccc--cHHHHHHHHHHHHHHH
Confidence 122 22222 233332211111 2357777777776654
No 179
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.49 E-value=60 Score=34.04 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 247 ELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 247 e~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
.....|+++|..+|..|+.+++.-.... ...-..|.+|++||..|+.+++
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~-~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQR-GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777877776665111111 2233578899999999999984
No 180
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.26 E-value=4.4e+02 Score=30.99 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=41.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKE----------------KVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~----------------KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e 166 (313)
..+.++..+|..+..++..+..++.....+ -..+..++..+.+.++.+..+++.+...-.++..
T Consensus 749 ~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~ 828 (1353)
T TIGR02680 749 ARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARR 828 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777787777777777776665544433 2445667777777777777777776555444443
No 181
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=52.98 E-value=2e+02 Score=26.87 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA----LMAQKRAEENSEIEKFRAVEME 179 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a----~~~q~qA~e~sEl~k~Ra~ElE 179 (313)
++.+|+.=+.+-.+=-.+...||..+|..-.+++.||++-||.=.+...+-++. ..++.+..+..|.++.....+|
T Consensus 82 pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~E 161 (192)
T PF09727_consen 82 PLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLE 161 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444456788999999999999999999998765444433331 1235566666677776666666
Q ss_pred H
Q 039546 180 Q 180 (313)
Q Consensus 180 q 180 (313)
+
T Consensus 162 k 162 (192)
T PF09727_consen 162 K 162 (192)
T ss_pred H
Confidence 5
No 182
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.07 E-value=3.8e+02 Score=29.94 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=15.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 039546 102 LVKGSELQAQLNLVQEDLKKAK 123 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~K 123 (313)
+...--|+.-|+.+++|+.|++
T Consensus 478 A~~~~gLk~kL~~Lr~E~sKa~ 499 (762)
T PLN03229 478 AVIAMGLQERLENLREEFSKAN 499 (762)
T ss_pred hhhhhhHHHHHHHHHHHHHhcc
Confidence 3444667788888888888864
No 183
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.89 E-value=2.1e+02 Score=26.95 Aligned_cols=11 Identities=9% Similarity=0.501 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 039546 137 IDELKEAQRVA 147 (313)
Q Consensus 137 l~ELE~AKr~i 147 (313)
++.++..++.+
T Consensus 19 ~dk~EDp~~~l 29 (225)
T COG1842 19 LDKAEDPEKML 29 (225)
T ss_pred HHhhcCHHHHH
Confidence 34444444333
No 184
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.77 E-value=3.2e+02 Score=29.03 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
.|.. ++.+..||..|...... +..-..++.+++...+.+.++..+++.............+....+..++++
T Consensus 180 Gl~~-~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 180 GLDL-IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred CcHH-HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 66778888777665433 223455667777777777777777777665555555555555556655554
No 185
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.58 E-value=3.7e+02 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
.=++.|++-+..+-.++......|+..+.+|+.
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~ 534 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQ 534 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555543
No 186
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=51.52 E-value=2.1e+02 Score=26.85 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 039546 115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQ 194 (313)
Q Consensus 115 ~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k 194 (313)
.+...+++.+....+......+..||+++|+.-+.+...- +.++...++...- ...-+
T Consensus 103 ~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~--------------e~Ar~k~e~a~~~--------~~~~~ 160 (237)
T cd07657 103 KRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDY--------------KAAKSKFEEAVVK--------GGRGG 160 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhh--------cccch
Confidence 3444455555555566666666666666666665555333 3344333333221 01124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQ 234 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~a 234 (313)
.++|-++.+|.. +...+...+.+|...+..-|.
T Consensus 161 ~~~eKak~k~~~-------~~~k~~~akNeY~l~l~~aN~ 193 (237)
T cd07657 161 RKLDKARDKYQK-------ACRKLHLCHNDYVLALLEAQE 193 (237)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777754 555666677777766554444
No 187
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.77 E-value=2e+02 Score=26.36 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEAS 186 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a 186 (313)
-+..-+-.++++|.+++..+..+-+.+.+.-.+++.....++++..+-..|... -.+ .|++.=+.+..
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~---G~E--dLAr~Al~~k~------- 95 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK---GRE--DLARAALIEKQ------- 95 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH--HHHHHHHHHHH-------
Confidence 345556677788899999999999999999999999999999998877776432 111 23332222211
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546 187 QKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN 233 (313)
Q Consensus 187 ~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~ 233 (313)
.....++....+|...-..+...+..|..|+..|..+=..++
T Consensus 96 -----~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 96 -----KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344455555555555556666667777777766655555
No 188
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.67 E-value=3.3e+02 Score=28.81 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA 265 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe 265 (313)
++|+..++.|...+.+.++.++++.-+. .++.+.-++ ......|+..+..|+..++|
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e-------~~kk~~e~k-------~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLE-------AEKKIVERK-------LQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHH-------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 6777777777776665555555444333 223222221 23344556666666666554
No 189
>PHA03011 hypothetical protein; Provisional
Probab=50.16 E-value=1.3e+02 Score=25.88 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 216 QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALL 267 (313)
Q Consensus 216 ~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~L 267 (313)
+-|+.|+-+|.+++++=+.-.+.-.+-...-..+...+--|+.||.+||+.+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333222334445567777778888998888765
No 190
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.88 E-value=4.5e+02 Score=30.14 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 132 EKVQAIDELKEAQRVAEEANEKLQEALMAQ 161 (313)
Q Consensus 132 ~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q 161 (313)
.|+-+..+|-++++.++.+..||++.....
T Consensus 331 qkadirc~LlEarrk~egfddk~~eLEKkr 360 (1265)
T KOG0976|consen 331 QKADIRCALLEARRKAEGFDDKLNELEKKR 360 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 456667778888888888877777764333
No 191
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=49.68 E-value=4.1e+02 Score=29.61 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTT 229 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~ 229 (313)
+..+|+.+-.-+.-..-+-..-++|+.+++...+..+
T Consensus 315 le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v 351 (786)
T PF05483_consen 315 LEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVV 351 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 192
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=49.43 E-value=2.8e+02 Score=27.53 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAE 148 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ie 148 (313)
.-..++++||++|++-....|+.=---|+.|+.-.|-++
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~ 65 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLE 65 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999998887777765555555554444333
No 193
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.66 E-value=1.4e+02 Score=26.51 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAI-DELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl-~ELE~AKr~ieeL~~KLE~a 157 (313)
.-+-.+|..+++.+...+.|..++.....++. .+....+..+++|+.+|+.+
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~ 173 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKK 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 45556788888888888888887766555543 45556667777777777763
No 194
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.65 E-value=2.7e+02 Score=27.26 Aligned_cols=207 Identities=25% Similarity=0.260 Sum_probs=107.3
Q ss_pred CCCccchhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---------
Q 039546 92 ATPPEKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRV---AEEANEKLQEALM--------- 159 (313)
Q Consensus 92 ~~~~~k~~~r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~---ieeL~~KLE~a~~--------- 159 (313)
++|.+|-.....+..++..+...++.++..++.+....-..+.++..|+..+... ++.|-..|...+.
T Consensus 18 ~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 18 SSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544555455678889999999999999999999999999999999999866433 3333222222110
Q ss_pred ---HHHHHHHhhHHHHHHHHHH----HHhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546 160 ---AQKRAEENSEIEKFRAVEM----EQAG--IEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD 230 (313)
Q Consensus 160 ---~q~qA~e~sEl~k~Ra~El----Eq~~--~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ 230 (313)
++..=.+.++=.+.-+.++ +... .......+..++..|...-+||..-=.-+.....- ..+..+| ++
T Consensus 98 ~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~-keLE~Ql---~~ 173 (309)
T PF09728_consen 98 AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQ-KELEVQL---AE 173 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH---HH
Confidence 0000111111111111221 1110 00112335566677777777776432222222211 1112222 12
Q ss_pred HHHHHhhh-hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhHhhh-------------------h-hhhHHHH
Q 039546 231 AKNQALSH-ADDATKIAELHVE-------KVEILSSELTRLKALLDSQRETE-------------------S-IKNRELV 282 (313)
Q Consensus 231 ak~aA~~~-AeeA~~aae~~~e-------KveeLt~EL~~lKe~Les~~~~e-------------------~-~~~~e~~ 282 (313)
+|...... +.....-+..-.. +|..|...-..|+..|+.-.++= . ..-+..+
T Consensus 174 AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~ 253 (309)
T PF09728_consen 174 AKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKI 253 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22222111 0111111222223 66667777777777776655411 1 1123578
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 039546 283 LKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 283 ~~le~e~~~L~~el~ka~~~ 302 (313)
.+||.|+..++..-++++..
T Consensus 254 kklEKE~~~~k~k~e~~n~~ 273 (309)
T PF09728_consen 254 KKLEKENQTWKSKWEKSNKA 273 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 89999999999998887764
No 195
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.47 E-value=2.8e+02 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 196 EIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
+|..+|+.-.....++..-+.+|..++.++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444443333
No 196
>PTZ00121 MAEBL; Provisional
Probab=47.75 E-value=6.1e+02 Score=31.05 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 039546 241 DATKIAELHVEKVEI 255 (313)
Q Consensus 241 eA~~aae~~~eKvee 255 (313)
+|-+-++....|+++
T Consensus 1319 e~~kkae~~~kka~~ 1333 (2084)
T PTZ00121 1319 EAKKKAEEAKKKADA 1333 (2084)
T ss_pred HHHHhHHHHHhhhHH
Confidence 333333333333333
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.73 E-value=1.8e+02 Score=24.87 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 251 EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 251 eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
.+...+..|+.+|+..+.... ..-.-.+++-+-||..|+..|.
T Consensus 108 ~~~k~~kee~~klk~~~~~~~----tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 108 AKLKQEKEELQKLKNQLQQRK----TQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 445556778888888777766 3333458888999999998774
No 198
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.72 E-value=3.4e+02 Score=28.17 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hhHhHhhhh
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS-----RTFGKKING 308 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka-----~~~e~k~~~ 308 (313)
...++..|...|..|...++...+.. ..+..+.+|--=+..|+.-|... .-|...|.-
T Consensus 376 ~~~~l~~~~~~~~~le~~~~~~~~~~--~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~ 438 (582)
T PF09731_consen 376 RLAKLAELNSRLKALEEALDARSEAE--DENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRA 438 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHH
Confidence 34557777778888877777655332 33456777777788888888777 555555543
No 199
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=47.66 E-value=2.7e+02 Score=26.99 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
+.+++.++.+|...-+.|..+..+|..++..|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 143 QQDLDTAATELAVKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554445544444444444443
No 200
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.59 E-value=4.8e+02 Score=29.78 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 124 EKIELIEKEKVQAIDELKEAQRVAEEANEKLQEAL 158 (313)
Q Consensus 124 eQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~ 158 (313)
+.+..--+-|.+...||+--.-.+..|..+|.++.
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 33333445567778888888888888888877664
No 201
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.38 E-value=4.8e+02 Score=29.68 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=48.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKE-K-VQAIDELKEAQRVAEEANEKLQEALMAQ---KRAEENSEIEKFRAVE 177 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~-K-aqAl~ELE~AKr~ieeL~~KLE~a~~~q---~qA~e~sEl~k~Ra~E 177 (313)
.+..-+..-+...|-|+-|..+|++..-.- + .=+.-|++.+.++|.+|...||+.+.-+ .-+......++.++..
T Consensus 630 ~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~v 709 (1104)
T COG4913 630 SREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKV 709 (1104)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence 334444455677788888888887654211 1 1233478899999999999998865332 2333444555666666
Q ss_pred HHH
Q 039546 178 MEQ 180 (313)
Q Consensus 178 lEq 180 (313)
+|.
T Consensus 710 ler 712 (1104)
T COG4913 710 LER 712 (1104)
T ss_pred HHH
Confidence 654
No 202
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.26 E-value=2.7e+02 Score=26.77 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 113 NLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE 152 (313)
Q Consensus 113 ~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~ 152 (313)
...+...+++.+++..+......++.||+.+|+.-.++-.
T Consensus 106 ~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~ 145 (264)
T cd07654 106 SAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQ 145 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556778899999999999999999999999999876654
No 203
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=46.99 E-value=2.6e+02 Score=27.16 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKI 126 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl 126 (313)
.+++.++..++-.+..++.++
T Consensus 95 ~~~~~~~~~~~a~l~~~~~~l 115 (370)
T PRK11578 95 EQAENQIKEVEATLMELRAQR 115 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444333
No 204
>PRK11020 hypothetical protein; Provisional
Probab=46.90 E-value=63 Score=27.99 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhHhhhh----hhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 256 LSSELTRLKALLDSQRETES----IKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 256 Lt~EL~~lKe~Les~~~~e~----~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
|-.||-+|-.-||.++-..+ .+..++|.++..|+..|..+|..-+.-
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888887775443 566789999999999999998877654
No 205
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=46.66 E-value=2.5e+02 Score=26.20 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 039546 122 AKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVR 201 (313)
Q Consensus 122 ~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar 201 (313)
+|+....++.....+...|++||..-+.+-..+|++...-..... .+-.. +..... ..+..+....+.++
T Consensus 109 ~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~-----~~~~k----~~~~~~-~~Ee~~~~K~~~A~ 178 (234)
T cd07652 109 IKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKL-----KFGLK----GNKSAA-QHEDELLRKVQAAD 178 (234)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-----ccccc----chhhHH-HhHHHHHHHHHHHH
Confidence 344444555566666666777777777777666666433111110 00000 000000 11224556666677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039546 202 NQHALDVASLLSTTQEL 218 (313)
Q Consensus 202 ~qha~~~AeL~Sak~EL 218 (313)
..|..-+.....-.+|+
T Consensus 179 ~~Y~~~v~~~n~~q~e~ 195 (234)
T cd07652 179 QDYASKVNAAQALRQEL 195 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777665555555554
No 206
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.41 E-value=1.9e+02 Score=24.74 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 039546 124 EKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQ 203 (313)
Q Consensus 124 eQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~q 203 (313)
.+.+.....-.+.-.|++.-+..++.|+.+|+.. +.. -..++..+-.++.+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~---------------------ere--------~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEEL---------------------ERE--------LASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------------------HHH--------HHHHHHHHHHHHHH
Confidence 3444444455555556666666666665555443 221 11244444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 204 HALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 204 ha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
+......|...++|+++++..+..
T Consensus 103 ~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 103 LKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777778888887766543
No 207
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.33 E-value=2.6e+02 Score=30.60 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHH
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELV 282 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~ 282 (313)
+|...+..|....+.|+.=..+|..-+++.. ..++.|..+|..++..+...+ ... ..+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k-----------------~eie~L~~~l~~~~r~~~~~~----~~~-rei 476 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELK-----------------REIEKLESELERFRREVRDKV----RKD-REI 476 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH----hhh-HHH
Q ss_pred HHHHHHHHHHHHHHHhhh----hHhHhhhhhccCC
Q 039546 283 LKLEEEIDTLKEELEKSR----TFGKKINGKRSFY 313 (313)
Q Consensus 283 ~~le~e~~~L~~el~ka~----~~e~k~~~~e~~~ 313 (313)
..++.+|..|+.+|+..+ .++.+|++++.++
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 208
>PRK11546 zraP zinc resistance protein; Provisional
Probab=46.18 E-value=1.7e+02 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 251 EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 251 eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
.+...|...|.+-+.+|+.-..+..-.. +.|.+|-.||+.|+.+|..-.+
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~-~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDS-SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777776665444333 5699999999999998875544
No 209
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=45.85 E-value=2.7e+02 Score=26.48 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEK 125 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQ 125 (313)
.....+.+|..++.++..++.+
T Consensus 82 ~l~~~~a~l~~~~~~l~~~~~~ 103 (331)
T PRK03598 82 ALMQAKANVSVAQAQLDLMLAG 103 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3455566666776666666543
No 210
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.63 E-value=1.9e+02 Score=24.50 Aligned_cols=51 Identities=27% Similarity=0.330 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039546 122 AKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEK 172 (313)
Q Consensus 122 ~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k 172 (313)
.+.+.++=+..+.++..+.+.++..|++|+..|+.++...++=++--.+++
T Consensus 72 n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~ 122 (139)
T PF05615_consen 72 NKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAK 122 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788899999999999999999999999877777665555544
No 211
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.55 E-value=5.6e+02 Score=29.95 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151 (313)
Q Consensus 116 QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~ 151 (313)
+.++.++.+.+..-.++..++...++..-+.|...+
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 212
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.36 E-value=2.2e+02 Score=25.21 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 117 EDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE 152 (313)
Q Consensus 117 eEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~ 152 (313)
.++...|.++...+..+..+-.+|..+..+|.+|+.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555553
No 213
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.08 E-value=3.3e+02 Score=27.44 Aligned_cols=88 Identities=24% Similarity=0.265 Sum_probs=55.7
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 223 QELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 223 qEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
++|+...++...-...|++-+++-+-.-..+++|.-+--++.+.-=...+-+-+++.+.-.+ .-|..-|+.++.|-+.+
T Consensus 334 qeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrk-qkeeeklk~e~qkikel 412 (445)
T KOG2891|consen 334 QELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRK-QKEEEKLKAEEQKIKEL 412 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 44555555555556667776665554444577787777676654444444555666554433 34556788889998999
Q ss_pred hHhhhhhcc
Q 039546 303 GKKINGKRS 311 (313)
Q Consensus 303 e~k~~~~e~ 311 (313)
+++..+-|.
T Consensus 413 eek~~eeed 421 (445)
T KOG2891|consen 413 EEKIKEEED 421 (445)
T ss_pred HHHHHHHHH
Confidence 888877653
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.88 E-value=1.7e+02 Score=28.42 Aligned_cols=46 Identities=35% Similarity=0.463 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
+.-+.+++-.+|+.|+.--..|-..+.||++-...+++++..|+..
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666666666666666555554
No 215
>PF15294 Leu_zip: Leucine zipper
Probab=44.78 E-value=3.2e+02 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 039546 253 VEILSSELTRLKALLDSQ 270 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~ 270 (313)
+.+++.....|++.|.++
T Consensus 210 ~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555554
No 216
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=44.63 E-value=1.8e+02 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
+.+++.++.+|...-+.|.+++.+|..++.++.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 133 (322)
T TIGR01730 101 QADLDDAKAAVEAAQADLEAAKASLASAQLNLR 133 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777777777777788888888877776654
No 217
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=44.33 E-value=2.3e+02 Score=25.23 Aligned_cols=100 Identities=7% Similarity=-0.015 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLS---TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEK-----VEILSSELTR 262 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~S---ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eK-----veeLt~EL~~ 262 (313)
-+|+-=+..+.+|....-.+|+. .++|+..+..+|...+..-. ..|.+.+.-++....+ .++...|+.+
T Consensus 24 fawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar---~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r 100 (154)
T PRK06568 24 PAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLE---TLRSQMIEESNEVTKKIIQEKTKEIEEFLEH 100 (154)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35776777777776666666654 46777788887776663322 2333344444444433 4445566777
Q ss_pred HHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039546 263 LKALLDSQRETESIKNRELVLKLEEEIDTLKEEL 296 (313)
Q Consensus 263 lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el 296 (313)
+++.-....+.+...+ +..|..|+..|=-++
T Consensus 101 ~~~~A~~~Ie~Ek~~A---l~elr~eva~Lav~i 131 (154)
T PRK06568 101 KKSDAIQLIQNQKSTA---SKELQDEFCDEVIKL 131 (154)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 7666544444443333 677777777665443
No 218
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.21 E-value=2.2e+02 Score=24.86 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEE 295 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~e 295 (313)
-...+..|..|+..|.+-|+.-+.+...-..+.+.+++.+...++.+
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567778888888888887766533333335566666555554433
No 219
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=43.02 E-value=2.5e+02 Score=25.27 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 136 AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTT 215 (313)
Q Consensus 136 Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak 215 (313)
+..+|....+-++.+-.-|...+..-.+..+......-++..|-.|+.-+.-.....|+.=..++..+|....+.|..+.
T Consensus 20 L~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l~ 99 (158)
T PF09486_consen 20 LRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAALR 99 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555666666677778888887655334444456777777888888888666666666
Q ss_pred HHHHHHHHHHH
Q 039546 216 QELQRIKQELA 226 (313)
Q Consensus 216 ~EL~klrqEl~ 226 (313)
+.|+....++.
T Consensus 100 ~~l~~~~~~ia 110 (158)
T PF09486_consen 100 QALRAAEDEIA 110 (158)
T ss_pred HHHHHHHHHHH
Confidence 66555554443
No 220
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.98 E-value=2.7e+02 Score=26.05 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 162 KRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223 (313)
Q Consensus 162 ~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrq 223 (313)
.+..+..+--+.++.+++.+....... -...+..|+.+++|-..-=.=|..=++||+.|+|
T Consensus 135 ~e~EqLL~YK~~ql~~~~~~~~~~~~~-l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 135 REFEQLLDYKERQLRELEEGRSKSGKN-LKSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444454555555555222111111 2347788888888888877888888888888864
No 221
>PF15294 Leu_zip: Leucine zipper
Probab=42.92 E-value=3.4e+02 Score=26.72 Aligned_cols=48 Identities=25% Similarity=0.397 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE 152 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~ 152 (313)
+.-|..++..+|+|..++|.++...|..=..+++|=...+..+.+|..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999998888888888876
No 222
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=41.89 E-value=1.7e+02 Score=29.34 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
+.+|+.++..|...-+.|.+++.+|+.++.++.
T Consensus 162 ~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~ 194 (415)
T PRK11556 162 RQELDAQQALVSETEGTIKADEASVASAQLQLD 194 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666666666667767766666554
No 223
>PF13514 AAA_27: AAA domain
Probab=41.52 E-value=5.8e+02 Score=29.04 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSE----IEKFRAVEMEQ 180 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sE----l~k~Ra~ElEq 180 (313)
+..+-.+|..++.+|+.+...... =.....+++.+...+++|...+...+....+...... +...+..+-+-
T Consensus 152 in~~l~~l~e~~~~l~~~~~~~~~----y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l 227 (1111)
T PF13514_consen 152 INQALKELKELERELREAEVRAAE----YQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAEL 227 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444455555555444332221 1233445555555555555555555444333322111 11111111111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 181 ~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
..++....-...+-.+++.+..+.......|.....++..++.+++.+
T Consensus 228 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 228 AELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred HhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111222345777888888888888888888888888888888654
No 224
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.00 E-value=5.4e+02 Score=28.54 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 039546 215 TQELQRIKQELAMTTDAK 232 (313)
Q Consensus 215 k~EL~klrqEl~~~~~ak 232 (313)
++|+..+..++..+....
T Consensus 500 ~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 500 REEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777776666655
No 225
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.97 E-value=4.4e+02 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~ 151 (313)
.++..++..+..++..++.++............+++..+-++++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 157 NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888888888877765
No 226
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=40.84 E-value=1.8e+02 Score=23.00 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 199 AVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 199 ~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
.-+.+|..-.-.|..++.+.+.++..|..
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668888888999999999999999863
No 227
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=40.68 E-value=1.9e+02 Score=23.06 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 039546 197 IEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS 237 (313)
Q Consensus 197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~ 237 (313)
|...++++-+.+-+....++.|..+|+||..++=..|+|..
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~R 50 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACR 50 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56778889999999999999999999999998888887544
No 228
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=40.04 E-value=2.7e+02 Score=24.76 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 109 QAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 109 E~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
+--++.++-||.++.+++...-..++.+..=|-..+-.++.++.+|.+
T Consensus 7 ~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 7 ERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445677888888888888888888888777777777777777766644
No 229
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=39.54 E-value=1e+02 Score=27.29 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhh----hhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 249 HVEKVEILSSELTRLKALLDSQRET----ESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~----e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
...+...|..||..++.++.+--.. +-...+..+.||++|+..++.++.+.+.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666542211 1122334566666666666666655544
No 230
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.25 E-value=5.6e+02 Score=28.15 Aligned_cols=141 Identities=23% Similarity=0.336 Sum_probs=89.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------
Q 039546 102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRA------ 175 (313)
Q Consensus 102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra------ 175 (313)
..++.+||.+|-++..+|...+...+..+ ++.+++.+.+--+++=..+|..-..+ -|||-
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~----~~~sd~~e~~~~~E~qR~rlr~elKe----------~KfRE~Rllse 171 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLE----KVHSDLKESNAAVEDQRRRLRDELKE----------YKFREARLLSE 171 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcchhhHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 34666777777777777766666655544 45666666666666655555442211 12222
Q ss_pred -HHHHHhhhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 039546 176 -VEMEQAGIEASQKKEEEWQKEIEAVRN---QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVE 251 (313)
Q Consensus 176 -~ElEq~~~~~a~~~~~a~k~ELE~ar~---qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~e 251 (313)
-|||...|. ++...-+.|. .|...--+..--.+|++-+..+++.++.=|.+|-+|-++|.-..+..-+
T Consensus 172 YSELEEENIs--------LQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ERe 243 (772)
T KOG0999|consen 172 YSELEEENIS--------LQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQERE 243 (772)
T ss_pred HHHHHHhcch--------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 244444332 3333333332 4666666667777888888999999999999999999999988876666
Q ss_pred HHHHHHHHHHHHH
Q 039546 252 KVEILSSELTRLK 264 (313)
Q Consensus 252 KveeLt~EL~~lK 264 (313)
.-.-|..||.-..
T Consensus 244 qk~alkkEL~q~~ 256 (772)
T KOG0999|consen 244 QKNALKKELSQYR 256 (772)
T ss_pred HHHHHHHHHHHhc
Confidence 6666777775443
No 231
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=38.28 E-value=23 Score=29.05 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=28.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 101 RLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 101 r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
||=...+|..-|+.+..++..+..+.......-...-.+|...+.....|..-|-.+
T Consensus 16 rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 445558889999999999988887776666555555555555555555555444433
No 232
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=6.7e+02 Score=28.71 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=49.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039546 162 KRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAK 232 (313)
Q Consensus 162 ~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak 232 (313)
++.....+.-.+..++|.+-.|++-.+. ...+.+++.+..+...-+++.+--.++|+.+++-+--++.+|
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~-tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDI-TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheecc-chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3445556666777788877666654432 457889999999988888888888888877776666665554
No 233
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=37.69 E-value=3.3e+02 Score=25.11 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=48.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
.++.....+|..+|.+|..+..++......=.++...+..+++.++++...|..
T Consensus 85 q~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 85 QRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777788888999999999999999999999999999999999999998874
No 234
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.60 E-value=90 Score=28.40 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=40.3
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 98 SQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEK------EKVQAIDELKEAQRVAEEANEKLQ 155 (313)
Q Consensus 98 ~~~r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~------~KaqAl~ELE~AKr~ieeL~~KLE 155 (313)
.+.+-.+...++.++..++..+..++..++.+.. .+...|.+|+.-+..+..|...|+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677777788888888888877777754 445557777777777777776665
No 235
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=37.59 E-value=3.2e+02 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIE 127 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~ 127 (313)
.+++.+|.+++-++..++-++.
T Consensus 81 ~~~~~~l~~a~a~l~~~~a~~~ 102 (310)
T PRK10559 81 PRYQKALAEAEADVAYYQVLAQ 102 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888877765554443
No 236
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.19 E-value=4e+02 Score=25.92 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
.+|+.+|.+-...-.+|..-+.+|..++.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 237
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=36.85 E-value=3.8e+02 Score=25.60 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL------------------------QEALMAQKRAEE 166 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL------------------------E~a~~~q~qA~e 166 (313)
.|+.+=.+||++--.|..+...-.+++.| ....+..+..|| ..|-..=.+|..
T Consensus 15 ~LN~atd~IN~lE~~L~~ar~~fr~~l~e---~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~ 91 (239)
T PF05276_consen 15 KLNQATDEINRLENELDEARATFRRLLSE---STKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANS 91 (239)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888887777776 444444444444 222222334444
Q ss_pred hhHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546 167 NSEIEKFRAVEMEQAGIEAS-QKKEEEWQKEIEAVRN--------------QHALDVASLLSTTQELQRIKQELAMTTDA 231 (313)
Q Consensus 167 ~sEl~k~Ra~ElEq~~~~~a-~~~~~a~k~ELE~ar~--------------qha~~~AeL~Sak~EL~klrqEl~~~~~a 231 (313)
.-+.++-.+.-+|++..... ..-|.+|+.=|..+-. .|...+..+..+...+..|.+.+-.+|.-
T Consensus 92 ~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~K 171 (239)
T PF05276_consen 92 MHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666677643322 2467889877764322 25555555555555555555555444321
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 232 KNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 232 k~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~ 271 (313)
---=|.-=..-....+....+|+.|...|...|..-..+.
T Consensus 172 SrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~AL 211 (239)
T PF05276_consen 172 SRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEAL 211 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000000001112233445556666666666666554443
No 238
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.76 E-value=3.4e+02 Score=24.92 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
..|-.|+..+..-....+..+......-.+...-|..+...+++|..+|..-
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555556666666666666677777777777777777664
No 239
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.68 E-value=1.3e+02 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039546 135 QAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 135 qAl~ELE~AKr~ieeL~~KLE~a 157 (313)
++..|+++++..|.++..+|+..
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~L 27 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKEL 27 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988776
No 240
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=36.35 E-value=3.5e+02 Score=24.96 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 197 IEAVRNQHALDVASLLSTTQELQRIK 222 (313)
Q Consensus 197 LE~ar~qha~~~AeL~Sak~EL~klr 222 (313)
|+.++.|-....--|..++.++++++
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444444444444443
No 241
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.15 E-value=3.8e+02 Score=25.07 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 039546 122 AKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVR 201 (313)
Q Consensus 122 ~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar 201 (313)
++..+...-..|-++..+|...-+...||..+.++....=.--...-+.-+-.+.++.... .-|.+..++.+
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l--------~~~eqry~aLK 138 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERL--------KKEEQRYQALK 138 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3444445555555555555555555555555555543222222222233333333333210 12333334443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Q 039546 202 NQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATK 244 (313)
Q Consensus 202 ~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~ 244 (313)
.|+. .-|..|..||..++..+..=+-+=.+.+++++--+.
T Consensus 139 -~hAe--ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~ 178 (207)
T PF05010_consen 139 -AHAE--EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQ 178 (207)
T ss_pred -HHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2322 567777888888888777666666666666554443
No 242
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=34.92 E-value=1.2e+02 Score=27.82 Aligned_cols=84 Identities=24% Similarity=0.241 Sum_probs=33.1
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 219 QRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 219 ~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
+.+|+||..-+..|.-.+-..-.+-|.- .=..+|+.=..+|....|..+ .+-...|.+|+.+|..|..=.-+
T Consensus 74 R~fK~Qfv~hAt~KLr~iv~~tsancs~----QVqqeL~~tf~rL~~~Vd~~~----~eL~~eI~~L~~~i~~le~~~~~ 145 (171)
T PF04799_consen 74 RAFKRQFVDHATEKLRLIVSFTSANCSH----QVQQELSSTFARLCQQVDQTK----NELEDEIKQLEKEIQRLEEIQSK 145 (171)
T ss_dssp ----------------------------------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHH----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677666666655443222222111 112345545555555555544 55556788888888888888888
Q ss_pred hhhHhHhhhhhc
Q 039546 299 SRTFGKKINGKR 310 (313)
Q Consensus 299 a~~~e~k~~~~e 310 (313)
++.+..|...++
T Consensus 146 ~k~LrnKa~~L~ 157 (171)
T PF04799_consen 146 SKTLRNKANWLE 157 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776554
No 243
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.83 E-value=2.1e+02 Score=24.05 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=42.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE 152 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~ 152 (313)
..+.+++.||..+..+|..+|.++......-...--|-+.-+..+.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999888888888887777777776654
No 244
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=34.71 E-value=1e+02 Score=24.87 Aligned_cols=45 Identities=36% Similarity=0.465 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhhh-hHHHHHHHHHHHHHHHH
Q 039546 250 VEKVEILSSELTRLKALLDSQRETESIK-NRELVLKLEEEIDTLKE 294 (313)
Q Consensus 250 ~eKveeLt~EL~~lKe~Les~~~~e~~~-~~e~~~~le~e~~~L~~ 294 (313)
.+++++|...|..|+.+|+.+.-...+. -...+.+||.||..|+.
T Consensus 2 ~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 2 SEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999998876444433 23567888888888875
No 245
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=34.08 E-value=5.6e+02 Score=26.68 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039546 140 LKEAQRVAEEANEKLQE 156 (313)
Q Consensus 140 LE~AKr~ieeL~~KLE~ 156 (313)
|..+-+.|++|++.+..
T Consensus 225 L~~sE~~VN~Ls~rar~ 241 (434)
T PRK15178 225 LSFAEQHVNTVSARMQK 241 (434)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45577778888766644
No 246
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=33.92 E-value=1.9e+02 Score=23.90 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 039546 264 KALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGK 304 (313)
Q Consensus 264 Ke~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e~ 304 (313)
|-+-+..-++.-.+....+..|..||..|+.+|...+.=+.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333444555555555555555444333
No 247
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=33.84 E-value=3.6e+02 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKE 132 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~ 132 (313)
.+++.+|.++|-+|..++-+|..++..
T Consensus 121 ~~~~~~l~qaqa~l~~a~a~l~~A~~~ 147 (415)
T PRK11556 121 RPFKVALAQAQGQLAKDQATLANARRD 147 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888887777666655443
No 248
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.86 E-value=4.5e+02 Score=24.90 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 039546 216 QELQRIKQELAM 227 (313)
Q Consensus 216 ~EL~klrqEl~~ 227 (313)
+||+.|++++..
T Consensus 53 eeLrqI~~DIn~ 64 (230)
T PF10146_consen 53 EELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 249
>PRK10869 recombination and repair protein; Provisional
Probab=31.83 E-value=6.3e+02 Score=26.61 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 039546 135 QAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAV 200 (313)
Q Consensus 135 qAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~a 200 (313)
..+.++..+=....++..+|+..+..+....+..++-+|++.|++.... ..+.+..+..++...
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L 217 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRL 217 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHH
Confidence 5666666677777777777777777777778888999999999988653 344456666665543
No 250
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.82 E-value=8.8e+02 Score=28.25 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=67.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039546 100 SRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179 (313)
Q Consensus 100 ~r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElE 179 (313)
.....+.+++.+|+.+.+.|..+.+++.+-.-.+...-.+++..+..+..-...|+....+=.++......+.+-+..++
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~ 524 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQE 524 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999998899999999999999999999998888887777777776666666666665
Q ss_pred H
Q 039546 180 Q 180 (313)
Q Consensus 180 q 180 (313)
+
T Consensus 525 ~ 525 (1041)
T KOG0243|consen 525 K 525 (1041)
T ss_pred H
Confidence 5
No 251
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=31.74 E-value=8.2e+02 Score=27.87 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546 147 AEEANEKLQEALMAQKRAEENSEIE 171 (313)
Q Consensus 147 ieeL~~KLE~a~~~q~qA~e~sEl~ 171 (313)
+.+|...|..+......+....+..
T Consensus 252 ~~~l~~~l~~~~~~~~~~~~~~~~~ 276 (1047)
T PRK10246 252 LDELQQEASRRQQALQQALAAEEKA 276 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445544444444443333333
No 252
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.63 E-value=2.6e+02 Score=28.33 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 196 EIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
|-+-++++|++++..|.+++-|-.+-+..|
T Consensus 296 E~~fAekay~AAl~SlEsArieAdrqq~yL 325 (372)
T COG3524 296 ENTFAEKAYAAALTSLESARIEADRQQLYL 325 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhee
Confidence 445688999999999999998765544333
No 253
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.45 E-value=97 Score=25.90 Aligned_cols=57 Identities=30% Similarity=0.288 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIE-KEK-----------VQAIDELKEAQRVAEEANEKLQEALMA 160 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE-~~K-----------aqAl~ELE~AKr~ieeL~~KLE~a~~~ 160 (313)
++++++.+=..+..||+|||-..-.-. ..+ .....+|.-++-+|.+|+-|+-+.+-+
T Consensus 23 kl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~E 91 (96)
T PF11365_consen 23 KLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYE 91 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhc
No 254
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.30 E-value=7.3e+02 Score=27.12 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~ 271 (313)
....=|+....-+..-+++.+.+..|-+.+...|..++.+=...+...-+. . +-.+-.|+..++++|+ ..
T Consensus 301 sv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~------~---al~~ele~~~l~A~l~-~L 370 (632)
T PF14817_consen 301 SVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSER------E---ALALELEVAGLKASLN-AL 370 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchh------h---HHHHHHHHHHHHHHHH-HH
Confidence 344556666666777778888888888888888888777544433332111 0 1123335666666666 33
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHhHhhhhhcc
Q 039546 272 ETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS 311 (313)
Q Consensus 272 ~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e~k~~~~e~ 311 (313)
-++-+.-.+....=.+....|+.+-++-.+|...+.+++.
T Consensus 371 ~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~Qe 410 (632)
T PF14817_consen 371 RSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQE 410 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443344444444555566666666666665555543
No 255
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=31.24 E-value=4.1e+02 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 039546 214 TTQELQRIKQELAMTTDAKNQA 235 (313)
Q Consensus 214 ak~EL~klrqEl~~~~~ak~aA 235 (313)
....+.+.+.+|...|..-|..
T Consensus 173 ~~~~~~~a~~~Y~~~l~~~N~~ 194 (251)
T cd07653 173 KTQAAEEAKNEYAAQLQKFNKE 194 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665555443
No 256
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.46 E-value=5.8e+02 Score=25.70 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHH
Q 039546 214 TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLK 293 (313)
Q Consensus 214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~ 293 (313)
..+|.+.|.+||..+=+.-..=.++.++-...-..-..-+.--...+..++.+|.....+...+..+.+.+|+.+|...+
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 039546 294 EEL 296 (313)
Q Consensus 294 ~el 296 (313)
.-+
T Consensus 82 ~~l 84 (330)
T PF07851_consen 82 CQL 84 (330)
T ss_pred hhH
No 257
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.37 E-value=2.9e+02 Score=29.43 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTT-QELQRIKQELA 226 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak-~EL~klrqEl~ 226 (313)
.++.+|...+++-..++++|..+. +-+.+|++-|+
T Consensus 237 ~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 237 SAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence 356677777777777777776654 34666666665
No 258
>PRK11677 hypothetical protein; Provisional
Probab=30.32 E-value=2.1e+02 Score=25.05 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEK 131 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~ 131 (313)
....|+.||++++.+|..||.++..==+
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988765433
No 259
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=30.04 E-value=2.2e+02 Score=27.05 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~ 151 (313)
-||++=...+++||++.++++..-..-=..|..|=++|+.++.-|-
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555568888888888877665555566666666665555444
No 260
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=29.99 E-value=3e+02 Score=24.77 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 108 LQAQLNLVQEDLKKAKEKIELIEKE---KVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 108 lE~QL~~~QeEL~k~KeQl~~AE~~---KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.+.+|..+|..+..++.+++..+.- +.-...|++.++..++.+..+++.+
T Consensus 21 ~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 73 (265)
T TIGR00999 21 MAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAA 73 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443322 1123455555655555555555544
No 261
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.90 E-value=2.7e+02 Score=25.95 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 248 LHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 248 ~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
....+++.|..+..+|.+.|+.+. ..+-+.++|.++...+.+|+..+.-
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~------~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAK------TVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999998333 4455777888888888888876653
No 262
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=29.28 E-value=7.6e+02 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223 (313)
Q Consensus 189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrq 223 (313)
.......|++-.+.+|+--+..|.-+-+||+.+|-
T Consensus 269 a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35568899999999999999999999999999874
No 263
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.22 E-value=2.4e+02 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDEL 140 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~EL 140 (313)
...|+.||+.+|.+|..||.++..==..=++.+..|
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l 62 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNL 62 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999887765433333444443
No 264
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.15 E-value=3.9e+02 Score=23.29 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKV 134 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~Ka 134 (313)
.++..++..+++++..++......++.-.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 265
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=29.09 E-value=3.9e+02 Score=23.35 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHH
Q 039546 253 VEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTL 292 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L 292 (313)
.+....|..++++.-....+.+...+ +..|..++..|
T Consensus 97 ~~~A~~ea~~~~~~A~~~I~~e~~~a---~~el~~e~~~l 133 (167)
T PRK14475 97 KEKLEEQIKRRAEMAERKIAQAEAQA---AADVKAAAVDL 133 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34445556666555444444333332 45555555544
No 266
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.08 E-value=4.5e+02 Score=24.00 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 039546 116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQK 195 (313)
Q Consensus 116 QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ 195 (313)
.+..+++......+.......+.+++++|+.-+.+....+.|...-.++..+...-+ .++++. ..+-.....
T Consensus 104 ~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~---~~~eK~-----~~k~~k~~~ 175 (251)
T cd07653 104 RQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTK---ADVEKA-----KANANLKTQ 175 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccch---hhHHHH-----HHHHHHHHH
Confidence 344455566666666777777777777777777777666666443333333211111 222221 111222345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039546 196 EIEAVRNQHALDVASLL 212 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~ 212 (313)
.++.+++.|...+..+.
T Consensus 176 ~~~~a~~~Y~~~l~~~N 192 (251)
T cd07653 176 AAEEAKNEYAAQLQKFN 192 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677888877666653
No 267
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.97 E-value=5.3e+02 Score=25.76 Aligned_cols=39 Identities=33% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 255 ILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 255 eLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~ 301 (313)
+|+..|..+++-|-+-- .-+.++++||..++++|-+-..
T Consensus 158 Els~~L~~l~~~~~~~s--------~~~~k~esei~~Ik~lvln~~~ 196 (300)
T KOG2629|consen 158 ELSRALASLKNTLVQLS--------RNIEKLESEINTIKQLVLNMSN 196 (300)
T ss_pred HHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcccc
Confidence 67777777777665211 2367888888888888765443
No 268
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.64 E-value=6.1e+02 Score=25.41 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039546 249 HVEKVEILSSELTRLKALLD 268 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Le 268 (313)
-.+++..|..|=-.|+..|+
T Consensus 183 L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555
No 269
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=28.60 E-value=4.6e+02 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
|..++..++..|...+ ++++.++..|..
T Consensus 162 ~~~~~~~~~~~Y~~~v-------~~~~~~~~~~~~ 189 (236)
T cd07651 162 AQSSINSSRRDYQNAV-------KALRELNEIWNR 189 (236)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5556666666666643 344444444543
No 270
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.55 E-value=4.7e+02 Score=24.02 Aligned_cols=50 Identities=36% Similarity=0.328 Sum_probs=23.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 101 RLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 101 r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
|..+.-.+........+++++...++...+. ++.+.-..+.+|..||-+.
T Consensus 94 RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~-------~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 94 RLNKLLSLKDDQEKLLEERKKLEKKIEEKEA-------ELKELESEIKELEMKILEL 143 (190)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555433 3333344444455555444
No 271
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.54 E-value=6.1e+02 Score=25.34 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 039546 280 ELVLKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~~ 301 (313)
..|.+|+.|+..+|.+||++.-
T Consensus 109 kqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887643
No 272
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.45 E-value=4.1e+02 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
....|+.+...+..+-..|.-....|...+.+...
T Consensus 54 I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ 88 (175)
T PRK14472 54 IQSSIDRAHSAKDEAEAILRKNRELLAKADAEADK 88 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 273
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=28.35 E-value=98 Score=24.19 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 039546 248 LHVEKVEILSSELTRLKALLDSQRETES 275 (313)
Q Consensus 248 ~~~eKveeLt~EL~~lKe~Les~~~~e~ 275 (313)
+-.+++-.|+.||.++|..+.-+.++.+
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srs 56 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRS 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 3456777888888888888776665543
No 274
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.25 E-value=3.1e+02 Score=21.94 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546 204 HALDVASLLSTTQELQRIKQELAMTTDAKNQ 234 (313)
Q Consensus 204 ha~~~AeL~Sak~EL~klrqEl~~~~~ak~a 234 (313)
...++.+|...-++...+..+++.+-..++.
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~ 54 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNE 54 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555555555555555444444
No 275
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.19 E-value=3.1e+02 Score=25.82 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=43.5
Q ss_pred cchhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 96 EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALM 159 (313)
Q Consensus 96 ~k~~~r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~ 159 (313)
+-.+.|.....+|+.||.-..+.+....++.++.++.+ +.+....++|+.+|.-.+.
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~-------e~tEer~~el~kklnslkk 130 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGR-------EETEERTDELTKKLNSLKK 130 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHH
Confidence 44455777889999999999999999999888777654 4566667777777766543
No 276
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=28.04 E-value=5.3e+02 Score=25.20 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELI 129 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~A 129 (313)
.+++.++..++-.|..++-++..+
T Consensus 97 ~~~~~~~~~a~a~l~~a~a~l~~a 120 (385)
T PRK09578 97 APLKAARDAAAGALAKAEAAHLAA 120 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555544
No 277
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=27.91 E-value=1.9e+02 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
.+.+++.++.++..+-+.+..++.+|..++.++
T Consensus 52 s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (265)
T TIGR00999 52 PRQEFESAEYALEEAQAEVQAAKSELRSAREAK 84 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 345677777777777677777776666655443
No 278
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=27.86 E-value=4.6e+02 Score=25.18 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
+.+++.++..|..+-+.|.++..+|+.++.++
T Consensus 121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l 152 (310)
T PRK10559 121 REEIDQANNVLQTVLHQLAKAQATRDLAKLDL 152 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666554
No 279
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=27.84 E-value=2e+02 Score=24.42 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHH
Q 039546 115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEAL------MAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 115 ~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~------~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
+++-+..|.-++..-+..+.|-.++.+..-|-+.+|...|...+ ..-..|.++.+.-+..+..||+
T Consensus 33 ~k~tv~~ye~~~~~LeqEr~Q~~q~~e~~~Rev~~L~~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~e~ 104 (106)
T PF03528_consen 33 LKETVSEYETQWSLLEQERLQWQQYRESEEREVAKLQRRLREGQELENLEKSMKKAQEDEEKLRSVVMPMEQ 104 (106)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhHHHHHHHhcccccc
Confidence 34444444444444444477777777777777777776666654 2233444555555555544443
No 280
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=27.53 E-value=6.5e+02 Score=25.37 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKE 132 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~ 132 (313)
+-+..|.+++-.|..+..++...+..
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~ 113 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQ 113 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 281
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=27.25 E-value=1.3e+02 Score=26.82 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 039546 278 NRELVLKLEEEIDTLKEELEKSRTFGK 304 (313)
Q Consensus 278 ~~e~~~~le~e~~~L~~el~ka~~~e~ 304 (313)
+.+....++..|..|...|..|++.+.
T Consensus 62 ak~~~~~~e~rI~~L~~~L~~A~Ii~~ 88 (160)
T PRK06342 62 RRRQMARPLRDLRYLAARRRTAQLMPD 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEEECC
Confidence 345677788999999999999988754
No 282
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.18 E-value=5e+02 Score=23.96 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 131 KEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 131 ~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
..+..+.++.+...+....+..+|+.+
T Consensus 99 ~~~K~~~~~~~k~qk~~~~~~~~l~Ka 125 (239)
T cd07647 99 EERKKTEDIMKRSQKNKKELYKKTMKA 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555544444444444444
No 283
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=27.08 E-value=5.6e+02 Score=25.30 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIE 130 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE 130 (313)
.+++.+|.+++-+|..++-+++.+.
T Consensus 99 ~~~~~~l~~a~A~l~~A~a~l~~a~ 123 (397)
T PRK15030 99 ATYQATYDSAKGDLAKAQAAANIAQ 123 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766666555443
No 284
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.00 E-value=2.2e+02 Score=27.00 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
..+|+.||+.+|.|+.+++-|++.. ..+|+..++.--++...|+.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~-------~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQEN-------QYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999998888877753 34555556555566655555
No 285
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.91 E-value=9.1e+02 Score=26.84 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039546 280 ELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~ 300 (313)
+.+.....+...++.+++++.
T Consensus 719 ~~l~~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 719 EELESRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554
No 286
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.91 E-value=6.8e+02 Score=25.40 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD 230 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ 230 (313)
..|+--|+.+..-|.-....+.-|.--|.+++.++.-.++
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LE 262 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALE 262 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 3477777777777777777777777777777777766654
No 287
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.52 E-value=4.1e+02 Score=22.75 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 039546 281 LVLKLEEEIDTLKEEL 296 (313)
Q Consensus 281 ~~~~le~e~~~L~~el 296 (313)
....|..++..|...|
T Consensus 119 ~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 119 LKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3555566665555444
No 288
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.34 E-value=8.1e+02 Score=26.08 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQ 144 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AK 144 (313)
...+++.++..++.++..+..++...+....++...++..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666555555555554333
No 289
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.26 E-value=5.6e+02 Score=24.17 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEAL 158 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~ 158 (313)
.-|+.-|.-++.+|.+++..+...=+.+.+...+|+.....++++..+=+.|.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999887766654
No 290
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.20 E-value=6.3e+02 Score=24.74 Aligned_cols=68 Identities=31% Similarity=0.358 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKI-------ELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAV 176 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl-------~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ 176 (313)
.+++++..+..+|.+|..+-.|+ .+....=.+.-.|+...+..|++++..+ .+..++.+-|+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I----------~~r~~~l~~raR 108 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI----------VERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44455444444444444444444 4444444444444444555555444443 334566777777
Q ss_pred HHHHh
Q 039546 177 EMEQA 181 (313)
Q Consensus 177 ElEq~ 181 (313)
-|...
T Consensus 109 Amq~n 113 (265)
T COG3883 109 AMQVN 113 (265)
T ss_pred HHHHc
Confidence 77653
No 291
>PF15463 ECM11: Extracellular mutant protein 11
Probab=26.09 E-value=4.2e+02 Score=22.75 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH 238 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~ 238 (313)
..|-...+-.-++|...+..|.-+..++.++=+.|+..|..+..++..
T Consensus 72 ~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~ 119 (139)
T PF15463_consen 72 DEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRA 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888899999999999999999999999999999999998887665
No 292
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.74 E-value=9.1e+02 Score=26.48 Aligned_cols=193 Identities=20% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ--EALMAQKRAEENSEIEKFRAVEMEQAG 182 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE--~a~~~q~qA~e~sEl~k~Ra~ElEq~~ 182 (313)
...++..+..+..++....+.+..++..+.-...-+...+...-.+..-+. .-...+. +..+..++..+-.
T Consensus 109 ~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~k~~~~~~ 181 (670)
T KOG0239|consen 109 LSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLS-------LLDLALKESLKLE 181 (670)
T ss_pred ccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHH-------HHHHHHHHHHHHh
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 183 IEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTR 262 (313)
Q Consensus 183 ~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~ 262 (313)
.++.+ ...+|+.++.-+......|.. .+..+..|...+-...........-...-....+++..|..+|..
T Consensus 182 ~~~~~-----~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~ 252 (670)
T KOG0239|consen 182 SDLGD-----LVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEE 252 (670)
T ss_pred hhHHH-----HHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHhhhh----------hhhHHHHHHHHHHHHHHHHHH---HhhhhHhHhhhhhccCC
Q 039546 263 LKALLDSQRETES----------IKNRELVLKLEEEIDTLKEEL---EKSRTFGKKINGKRSFY 313 (313)
Q Consensus 263 lKe~Les~~~~e~----------~~~~e~~~~le~e~~~L~~el---~ka~~~e~k~~~~e~~~ 313 (313)
++..+....+... ......+..|++....|...+ +.=+.+-..+.++.+-|
T Consensus 253 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 253 LKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
No 293
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.30 E-value=4.8e+02 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 190 EEEWQKEIEAVRNQHALDVASLLST 214 (313)
Q Consensus 190 ~~a~k~ELE~ar~qha~~~AeL~Sa 214 (313)
+-.-+.+++....++.+++++|.+-
T Consensus 42 ~~vtk~d~e~~~~~~~a~~~eLr~e 66 (177)
T PF07798_consen 42 DLVTKSDLENQEYLFKAAIAELRSE 66 (177)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888887653
No 294
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.14 E-value=4.7e+02 Score=22.94 Aligned_cols=47 Identities=40% Similarity=0.453 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 248 LHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 248 ~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
-.-+|...+..++..++..|.... +.+.++..++..++.+..+....
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~~--------~~~~~~r~~l~~~k~~r~k~~~~ 127 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDRE--------EELAKLREELYRVKKERDKLRKQ 127 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665554 33444444444444444444433
No 295
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.04 E-value=3e+02 Score=27.64 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
..++.++++++.++.++.++++... +.++++.++...|+..
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~~~~-----------k~~~k~~~~~~q~~~~ 285 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLEKNP-----------KKKNKLKELEEQLASL 285 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHH
Confidence 6677788888888888887776665 4555555555555444
No 296
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.83 E-value=6e+02 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 129 IEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 129 AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
+.......+.+|+.+|+.-+.+-..-+.|
T Consensus 119 ~qk~~~~~~~~lekaKk~Y~~acke~E~A 147 (253)
T cd07676 119 AQQHIETCWKQLESSKRRFERDCKEADRA 147 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 297
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.79 E-value=4.3e+02 Score=22.37 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
.....|+.+......+-..|.-....|...+.+...
T Consensus 39 ~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~ 74 (156)
T PRK05759 39 KIADGLAAAERAKKELELAQAKYEAQLAEARAEAAE 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 298
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.75 E-value=9.7e+02 Score=26.43 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039546 109 QAQLNLVQEDLKKAKEKIELIEKEKVQ-------AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE 177 (313)
Q Consensus 109 E~QL~~~QeEL~k~KeQl~~AE~~Kaq-------Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E 177 (313)
+.++..++.|+..+-+.+..+-.+|.| +|.|=+.-+..+++|...++-+..+-.+..++ +.+++...
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkea--l~q~~s~h 80 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEA--LGQYRSQH 80 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 455666666666666666666666655 57777788889999999999888887777765 34555433
No 299
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.55 E-value=5e+02 Score=23.03 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHH
Q 039546 253 VEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLK 293 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~ 293 (313)
+.....++.++.+.-....+.+...+ +..|..++..|=
T Consensus 111 l~~A~~ea~~~~~~a~~~ie~Ek~~a---~~~l~~ei~~la 148 (184)
T CHL00019 111 INQAKEDLERLENYKNETIRFEQQRA---INQVRQQVFQLA 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44455566666655555554444333 555555555443
No 300
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=24.54 E-value=6e+02 Score=23.95 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039546 110 AQLNLVQEDLKKAKEKI 126 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl 126 (313)
.++..++..+..+.-++
T Consensus 55 ~~~~~a~a~l~~a~a~~ 71 (327)
T TIGR02971 55 AELDVARTQLDEAKARL 71 (327)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555544444443
No 301
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.19 E-value=5e+02 Score=22.95 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
....|+.+...+..+-..|.....+|...+.+-...
T Consensus 63 I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~I 98 (184)
T PRK13455 63 IRSELEEARALREEAQTLLASYERKQREVQEQADRI 98 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 302
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.89 E-value=6e+02 Score=23.76 Aligned_cols=33 Identities=3% Similarity=-0.016 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
+...|.++..-|+....-..-.++-|.-++..-
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NE 113 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNE 113 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 444455554444444444444444444444433
No 303
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.54 E-value=4.1e+02 Score=22.55 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=39.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEA 150 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL 150 (313)
.++..++.||..+..+|-.+|.++......-...--|-+.=++.++++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999988888888777776666666654
No 304
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.37 E-value=6.9e+02 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEK 153 (313)
Q Consensus 118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~K 153 (313)
++++..+++..+...=.+++.||+.+|+.-..+...
T Consensus 110 ~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~e 145 (263)
T cd07678 110 VLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERV 145 (263)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777888888888877755543
No 305
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=23.18 E-value=1e+03 Score=26.16 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 039546 192 EWQKEIEAVRNQH----ALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 192 a~k~ELE~ar~qh----a~~~AeL~Sak~EL~klrqEl 225 (313)
..+.+|...+..| ..-.+++..++.+|...++-.
T Consensus 214 ~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri 251 (629)
T KOG0963|consen 214 DTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRI 251 (629)
T ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444442 233345555566665555443
No 306
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.13 E-value=6.5e+02 Score=23.85 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 039546 119 LKKAKEKIELIEKEKVQAIDELKEAQ---RVAEEANEKLQEA 157 (313)
Q Consensus 119 L~k~KeQl~~AE~~KaqAl~ELE~AK---r~ieeL~~KLE~a 157 (313)
|.+++.++..-+..|..++.|++..+ +.|.|+....+..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L 44 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEEL 44 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777665443 3444444444443
No 307
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.08 E-value=3.1e+02 Score=24.18 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546 206 LDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE 272 (313)
Q Consensus 206 ~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~ 272 (313)
....+...-+.|+.+++.|+..+ +.-||=.+-++ ...|++.|..||..+++++.+...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i--------S~qDeFAkwaK-l~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI--------SAQDEFAKWAK-LNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS---------TTTSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555667777777776543 33344445565 468899999999999999888764
No 308
>PF15556 Zwint: ZW10 interactor
Probab=22.96 E-value=6.9e+02 Score=24.07 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039546 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEK 172 (313)
Q Consensus 121 k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k 172 (313)
.|.++++.+-.+=.++|--+++|.|.--.|..-|+..++-++-|++-..+++
T Consensus 74 tYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQ 125 (252)
T PF15556_consen 74 TYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQ 125 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888887777777766544444544444443
No 309
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=22.52 E-value=5.5e+02 Score=22.82 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 132 EKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165 (313)
Q Consensus 132 ~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~ 165 (313)
+|..+-.||.+|.-..+.|...|+....+.....
T Consensus 21 aKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLe 54 (134)
T PF15233_consen 21 AKKKSSEELGEAQALWEALQRELDSLNGEKVHLE 54 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6778888888888888888888877766555443
No 310
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.52 E-value=1e+03 Score=25.79 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.+-+.+|..+|+.|..+..++...+..-...-.++......+++....+++-
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777666666666666665555544
No 311
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.22 E-value=4.8e+02 Score=29.18 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=54.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHH
Q 039546 207 DVASLLSTTQ----ELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELV 282 (313)
Q Consensus 207 ~~AeL~Sak~----EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~ 282 (313)
-++.+++..+ ||+.+..++..++.--..+-..+.++..-+ ..-+++|..+|..+|.--++.. ++|
T Consensus 34 SL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da---~~ai~eL~~~i~eiks~ae~Te--------~~V 102 (793)
T KOG2180|consen 34 SLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADA---QAAIEELFQKIQEIKSVAESTE--------AMV 102 (793)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHH---HHHHHHHHHHHHHHHHHHHhHH--------HHH
Confidence 3456666666 999999999999888888888888877322 3447888889998888766655 456
Q ss_pred HHHHHHHHHH
Q 039546 283 LKLEEEIDTL 292 (313)
Q Consensus 283 ~~le~e~~~L 292 (313)
.++-..|.-|
T Consensus 103 ~eiTrdIKqL 112 (793)
T KOG2180|consen 103 QEITRDIKQL 112 (793)
T ss_pred HHHHHHHHhh
Confidence 6666666544
No 312
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.03 E-value=7.9e+02 Score=24.45 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039546 208 VASLLSTTQELQRIKQELA 226 (313)
Q Consensus 208 ~AeL~Sak~EL~klrqEl~ 226 (313)
+....-.++|-+-|||+|+
T Consensus 163 lesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555666553
No 313
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=22.02 E-value=4.3e+02 Score=21.36 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 187 QKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL 266 (313)
Q Consensus 187 ~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~ 266 (313)
.+++.-.+..++.+......+-..+......|...+.+....++.-.. .| -+.....+.+...++..+.+.
T Consensus 29 ~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~---~a------~~~~~~~~~ea~~~~~~~~~~ 99 (132)
T PF00430_consen 29 DERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKE---EA------EKEKEEILAEAEKEAERIIEQ 99 (132)
T ss_dssp S--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCH---HH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH------HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666665554433221 11 112223344455555555544
Q ss_pred hhhhHhhhhhhhHHHHHHHHHHHHHH
Q 039546 267 LDSQRETESIKNRELVLKLEEEIDTL 292 (313)
Q Consensus 267 Les~~~~e~~~~~e~~~~le~e~~~L 292 (313)
.....+.+.. ..+..|..++..|
T Consensus 100 a~~~i~~e~~---~a~~~l~~~~~~l 122 (132)
T PF00430_consen 100 AEAEIEQEKE---KAKKELRQEIVDL 122 (132)
T ss_dssp HHHHHHHHHH---HHHHHHT------
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4444333222 3355555555444
No 314
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.91 E-value=6.7e+02 Score=23.59 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
+|++|--++..-+.-..++.+.+..|..++-.+
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l 47 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAEL 47 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556666666555555566666666665555444
No 315
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.70 E-value=1.3e+03 Score=26.73 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 039546 137 IDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRN 202 (313)
Q Consensus 137 l~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~ 202 (313)
.-.-+.+-..+-+|.+||.-+.++..|-.++-+++...+.|+- ++.+|+.--+..|+
T Consensus 448 ~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~---------RS~A~~~A~~llR~ 504 (1480)
T COG3096 448 QAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELA---------RSEAWDVARELLRE 504 (1480)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccc---------hhhHHHHHHHHHHh
Confidence 3333444445556667777777777777776666666555542 25677766666553
No 316
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.61 E-value=9.9e+02 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAK 232 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak 232 (313)
|..||...++--..-+..++.=..-|.++...+...+.++
T Consensus 394 ~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~ 433 (493)
T KOG0804|consen 394 CQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSK 433 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333
No 317
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.20 E-value=7.2e+02 Score=23.64 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039546 209 ASLLSTTQELQRIKQELA 226 (313)
Q Consensus 209 AeL~Sak~EL~klrqEl~ 226 (313)
++.++.++++.+++.++.
T Consensus 151 ~~~~~~~~~~~kL~~el~ 168 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELE 168 (216)
T ss_pred hhHHHHHhhHHHHHHHHH
Confidence 345555566666555554
No 318
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.90 E-value=3.7e+02 Score=20.23 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIE-KEKVQAIDELKEAQRVAEEANEKLQ 155 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE-~~KaqAl~ELE~AKr~ieeL~~KLE 155 (313)
.+.+++.-|+.+.+-|....-.+.+.- +.|.+....|..-|..+..|+..|+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555544444 6788888888888888888877765
No 319
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.84 E-value=9.3e+02 Score=24.80 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
.|..-++.+..|......++.....+|+.++++++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666555555555555555555555443
No 320
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.69 E-value=5e+02 Score=21.63 Aligned_cols=56 Identities=27% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546 118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL-QEALMAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL-E~a~~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
+|..-+.+...+|..+.++-.| +++|+..| +.|+.=-.-|.......+.+...|++
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~E-------lEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~ 58 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESE-------LEELTASLFEEANKMVADARRERAALEEKNEQLEK 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666655 55666666 55554444445445555555555554
No 321
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.54 E-value=2.5e+02 Score=21.46 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 039546 248 LHVEKVEILSSELTRLKALLDSQRETE 274 (313)
Q Consensus 248 ~~~eKveeLt~EL~~lKe~Les~~~~e 274 (313)
+-.+++..|..||.+++..+..+..+.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888777766543
No 322
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1.3e+03 Score=26.40 Aligned_cols=193 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHH-------HHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ-KRAEENSEI-------EKFRA 175 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q-~qA~e~sEl-------~k~Ra 175 (313)
++++..++..++.+.+.-+|-||...-..-.+.++.++..+-+=+++..-|.+.+.-. .|-.-..++ ..+..
T Consensus 693 ~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~ 772 (970)
T KOG0946|consen 693 EVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKA 772 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039546 176 VEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEI 255 (313)
Q Consensus 176 ~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKvee 255 (313)
..........+.--..-.+.++-.-....+.-..-|..---|+.+++++..+.+..-.++..--+..-.....-+.....
T Consensus 773 ~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ 852 (970)
T KOG0946|consen 773 TQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKL 852 (970)
T ss_pred HHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHH
Q ss_pred HHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 039546 256 LSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGK 304 (313)
Q Consensus 256 Lt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e~ 304 (313)
...++..+++.+..-. ..|.++-++++.|........-.++
T Consensus 853 ieq~ls~l~~~~k~~~--------nli~~ltEk~~sl~~qadse~l~ka 893 (970)
T KOG0946|consen 853 IEQKLSNLQEKIKFGN--------NLIKELTEKISSLEAQADSETLSKA 893 (970)
T ss_pred HHHHHHHHHHHhhhhh--------hHHHHHhhhhhhHHHhhcchHHHHH
No 323
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.15 E-value=6.7e+02 Score=28.73 Aligned_cols=90 Identities=29% Similarity=0.341 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 195 KEIEAVRNQHALDVASLLSTT----QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQ 270 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak----~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~ 270 (313)
.+...++++|..++..|..-+ .|..+|+.++...-- -+...++...+|+..|..+|..++.-|.+-
T Consensus 498 ~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~----------~~~kl~eer~qklk~le~q~s~lkk~l~~~ 567 (913)
T KOG0244|consen 498 AEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR----------LAAKLGEERVQKLKSLETQISLLKKKLSSQ 567 (913)
T ss_pred hhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH----------HHHHhhhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 355667888888877776544 344566666654322 345567788889999999999998877776
Q ss_pred Hh--hhhhhhHHHHHHHHHHHHHHHH
Q 039546 271 RE--TESIKNRELVLKLEEEIDTLKE 294 (313)
Q Consensus 271 ~~--~e~~~~~e~~~~le~e~~~L~~ 294 (313)
.. .--.....++.+|..||..++.
T Consensus 568 ~~l~~~~~~~~~~~~kl~~ei~~~k~ 593 (913)
T KOG0244|consen 568 RKLIKPKPKSEGIRAKLLQEIHIAKG 593 (913)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHH
Confidence 64 1112233567788888776654
No 324
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.12 E-value=6e+02 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHH
Q 039546 253 VEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLK 293 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~ 293 (313)
+.....++.++++.-....+.+...+ +..|..++..|=
T Consensus 103 ~~~A~~ea~~~~~~a~~~ie~e~~~a---~~el~~ei~~lA 140 (173)
T PRK13460 103 LEETNNEVKAQKDQAVKEIELAKGKA---LSQLQNQIVEMT 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34445555555555554444333332 555555555543
No 325
>PRK15396 murein lipoprotein; Provisional
Probab=20.10 E-value=4.7e+02 Score=21.02 Aligned_cols=13 Identities=23% Similarity=0.274 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 039546 136 AIDELKEAQRVAE 148 (313)
Q Consensus 136 Al~ELE~AKr~ie 148 (313)
+-+|..+|..-||
T Consensus 58 a~~eA~raN~RlD 70 (78)
T PRK15396 58 AKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554444
Done!