Query 039546
Match_columns 313
No_of_seqs 109 out of 119
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 96.0 0.028 9.7E-07 61.0 11.0 18 113-130 860-877 (1184)
2 1i84_S Smooth muscle myosin he 95.5 0.05 1.7E-06 59.1 10.5 47 111-157 872-918 (1184)
3 3ol1_A Vimentin; structural ge 95.5 0.61 2.1E-05 38.2 14.7 51 114-164 17-67 (119)
4 3vkg_A Dynein heavy chain, cyt 95.1 2.9 9.8E-05 50.5 24.0 162 103-268 1927-2094(3245)
5 3na7_A HP0958; flagellar bioge 95.0 1.9 6.5E-05 38.9 23.2 51 104-154 12-62 (256)
6 3na7_A HP0958; flagellar bioge 94.4 2.8 9.5E-05 37.8 22.8 68 112-179 13-80 (256)
7 3tnu_A Keratin, type I cytoske 91.6 5 0.00017 33.0 13.4 50 198-268 80-129 (131)
8 2dfs_A Myosin-5A; myosin-V, in 91.5 9.6 0.00033 41.5 18.8 21 251-271 1023-1043(1080)
9 2efr_A General control protein 91.2 6.8 0.00023 33.8 19.0 66 141-221 73-138 (155)
10 3tnu_B Keratin, type II cytosk 90.1 6.9 0.00024 32.0 13.8 50 198-268 78-127 (129)
11 3mq7_A Bone marrow stromal ant 87.4 9 0.00031 32.0 11.4 60 106-165 28-98 (121)
12 2b5u_A Colicin E3; high resolu 87.2 28 0.00095 35.5 21.0 102 203-308 343-448 (551)
13 3oja_B Anopheles plasmodium-re 87.1 18 0.00063 35.1 15.6 37 106-142 452-488 (597)
14 3swk_A Vimentin; cytoskeleton, 86.1 7.1 0.00024 30.3 9.7 44 118-161 1-44 (86)
15 2v71_A Nuclear distribution pr 86.1 18 0.00062 32.2 22.6 50 105-157 19-68 (189)
16 2w83_C C-JUN-amino-terminal ki 85.6 4.7 0.00016 31.3 8.3 66 216-289 9-74 (77)
17 3oja_B Anopheles plasmodium-re 83.5 34 0.0012 33.2 15.8 77 192-268 506-582 (597)
18 2eqb_B RAB guanine nucleotide 83.5 16 0.00055 29.4 12.7 39 193-231 3-41 (97)
19 2eqb_B RAB guanine nucleotide 82.3 18 0.00062 29.1 12.1 75 104-178 13-88 (97)
20 1ic2_A Tropomyosin alpha chain 80.2 17 0.00058 27.5 10.7 59 103-161 6-64 (81)
21 3vkg_A Dynein heavy chain, cyt 77.6 1.4E+02 0.0048 36.6 29.4 20 138-157 1927-1946(3245)
22 3o0z_A RHO-associated protein 77.0 38 0.0013 29.7 20.4 89 203-295 52-140 (168)
23 2f1m_A Acriflavine resistance 76.4 13 0.00044 32.6 9.1 34 193-226 96-129 (277)
24 3ol1_A Vimentin; structural ge 76.2 29 0.001 28.1 14.0 88 193-309 25-113 (119)
25 3hnw_A Uncharacterized protein 74.7 22 0.00074 29.8 9.5 24 108-131 80-103 (138)
26 3lay_A Zinc resistance-associa 73.6 8.5 0.00029 33.6 7.0 65 190-271 69-133 (175)
27 2e7s_A RAB guanine nucleotide 73.4 32 0.0011 29.1 10.3 41 193-233 23-63 (135)
28 3u59_A Tropomyosin beta chain; 72.0 34 0.0011 26.8 13.6 45 252-297 52-96 (101)
29 3vp9_A General transcriptional 71.7 6.3 0.00021 31.5 5.2 69 218-299 16-87 (92)
30 3u1c_A Tropomyosin alpha-1 cha 71.6 35 0.0012 26.9 13.6 46 251-297 51-96 (101)
31 3fpp_A Macrolide-specific effl 71.1 18 0.00061 32.7 8.9 33 194-226 113-145 (341)
32 3qwe_A GMIP, GEM-interacting p 70.8 68 0.0023 29.9 14.8 35 190-224 179-213 (279)
33 2dfs_A Myosin-5A; myosin-V, in 70.3 1.3E+02 0.0044 32.8 19.1 31 195-225 991-1021(1080)
34 4dk0_A Putative MACA; alpha-ha 69.4 15 0.0005 33.5 8.0 23 106-128 66-88 (369)
35 3i00_A HIP-I, huntingtin-inter 68.1 18 0.00062 29.8 7.5 44 253-300 17-60 (120)
36 3fpp_A Macrolide-specific effl 66.6 17 0.00057 32.9 7.7 27 106-132 65-91 (341)
37 3m91_A Proteasome-associated A 66.2 22 0.00074 25.4 6.5 38 191-228 12-49 (51)
38 3u59_A Tropomyosin beta chain; 66.2 45 0.0016 26.0 12.2 76 104-179 10-85 (101)
39 2efk_A CDC42-interacting prote 65.5 71 0.0024 28.1 22.6 88 119-214 111-198 (301)
40 4dk0_A Putative MACA; alpha-ha 65.5 36 0.0012 30.9 9.8 24 194-217 128-151 (369)
41 3ghg_A Fibrinogen alpha chain; 64.7 1.1E+02 0.0039 31.2 13.8 83 206-299 64-150 (562)
42 2fxo_A Myosin heavy chain, car 64.3 57 0.002 26.5 18.5 53 104-156 7-59 (129)
43 3ni0_A Bone marrow stromal ant 64.2 18 0.00061 29.2 6.4 44 259-303 47-90 (99)
44 3tnu_B Keratin, type II cytosk 63.6 58 0.002 26.4 9.7 34 193-226 13-46 (129)
45 3mq9_A Bone marrow stromal ant 63.0 1E+02 0.0035 29.1 15.2 43 256-302 423-465 (471)
46 3s4r_A Vimentin; alpha-helix, 62.1 17 0.00058 28.5 5.9 39 116-154 55-93 (93)
47 2b9c_A Striated-muscle alpha t 61.8 73 0.0025 26.9 11.6 43 104-150 4-46 (147)
48 3o0z_A RHO-associated protein 59.5 90 0.0031 27.3 16.0 101 106-210 58-158 (168)
49 2lf0_A Uncharacterized protein 58.9 19 0.00065 30.1 5.9 60 214-275 8-67 (123)
50 3tnu_A Keratin, type I cytoske 58.3 59 0.002 26.5 8.9 34 193-226 15-48 (131)
51 3trt_A Vimentin; cytoskeleton, 58.3 52 0.0018 24.1 10.0 42 249-298 33-74 (77)
52 3mq7_A Bone marrow stromal ant 57.5 24 0.00082 29.4 6.3 23 280-302 71-93 (121)
53 2f1m_A Acriflavine resistance 57.0 93 0.0032 27.1 10.5 27 106-132 56-82 (277)
54 3haj_A Human pacsin2 F-BAR; pa 53.4 1.7E+02 0.0057 28.4 17.1 22 193-214 197-218 (486)
55 3mq9_A Bone marrow stromal ant 50.3 93 0.0032 29.5 10.1 17 140-156 420-436 (471)
56 2i1j_A Moesin; FERM, coiled-co 50.1 25 0.00084 35.6 6.3 44 118-161 336-379 (575)
57 2xv5_A Lamin-A/C; structural p 49.9 81 0.0028 23.8 8.7 54 196-270 6-59 (74)
58 2fxo_A Myosin heavy chain, car 49.5 1E+02 0.0035 24.9 16.7 43 255-298 80-122 (129)
59 2e7s_A RAB guanine nucleotide 49.3 34 0.0012 29.0 6.0 30 105-134 3-32 (135)
60 2ocy_A RAB guanine nucleotide 49.2 1.3E+02 0.0044 25.9 17.0 32 103-134 13-44 (154)
61 3u1c_A Tropomyosin alpha-1 cha 48.8 96 0.0033 24.3 14.0 75 104-178 10-84 (101)
62 3oja_A Leucine-rich immune mol 48.2 66 0.0023 30.6 8.7 52 106-157 424-475 (487)
63 2efl_A Formin-binding protein 47.8 1.4E+02 0.0049 26.0 21.2 40 121-160 120-159 (305)
64 2lf0_A Uncharacterized protein 47.5 20 0.0007 29.9 4.3 48 255-302 7-58 (123)
65 2b9c_A Striated-muscle alpha t 47.2 1.3E+02 0.0044 25.3 14.2 66 238-311 67-132 (147)
66 1s94_A S-syntaxin; three helix 47.0 1.3E+02 0.0043 25.2 9.7 33 196-228 120-152 (180)
67 3ni0_A Bone marrow stromal ant 45.5 1.2E+02 0.0041 24.5 9.5 21 106-126 21-41 (99)
68 4dyl_A Tyrosine-protein kinase 45.1 2.1E+02 0.0071 27.1 15.1 84 119-215 114-198 (406)
69 2pms_C Pneumococcal surface pr 45.0 1.3E+02 0.0044 25.2 8.8 53 249-302 66-118 (125)
70 1ic2_A Tropomyosin alpha chain 44.7 96 0.0033 23.2 11.6 20 139-158 14-33 (81)
71 3hnw_A Uncharacterized protein 43.4 1.2E+02 0.0042 25.2 8.6 20 110-129 68-87 (138)
72 3tul_A Cell invasion protein S 42.2 1.4E+02 0.0049 25.8 8.9 46 136-181 53-98 (158)
73 1ez3_A Syntaxin-1A; three heli 41.7 1.2E+02 0.0042 23.5 12.2 35 195-229 88-122 (127)
74 2ocy_A RAB guanine nucleotide 40.2 1.8E+02 0.0061 25.0 18.3 31 197-227 39-69 (154)
75 2b5u_A Colicin E3; high resolu 40.2 3.2E+02 0.011 27.9 17.8 45 111-155 295-345 (551)
76 2v71_A Nuclear distribution pr 39.1 2E+02 0.007 25.4 22.4 102 191-297 73-178 (189)
77 1wt6_A Myotonin-protein kinase 37.7 1.4E+02 0.0049 23.2 7.6 36 114-156 28-63 (81)
78 1l8d_A DNA double-strand break 36.7 1.4E+02 0.0049 22.9 12.1 32 195-226 71-102 (112)
79 1x79_B RAB GTPase binding effe 36.2 1.8E+02 0.0061 23.8 12.9 96 108-228 4-103 (112)
80 3abh_A Pacsin2, protein kinase 34.1 2.5E+02 0.0086 24.9 15.0 79 129-215 148-226 (312)
81 3lay_A Zinc resistance-associa 33.6 2.1E+02 0.0073 24.7 8.9 55 253-308 87-142 (175)
82 1gk6_A Vimentin; intermediate 33.3 1.3E+02 0.0045 21.4 6.8 40 209-269 14-53 (59)
83 3q8t_A Beclin-1; autophagy, AT 33.1 1.7E+02 0.0059 22.8 13.8 42 107-148 8-49 (96)
84 1f5n_A Interferon-induced guan 33.0 4E+02 0.014 27.0 14.9 67 195-266 515-582 (592)
85 3lnn_A Membrane fusion protein 33.0 62 0.0021 29.3 5.6 35 193-227 127-161 (359)
86 3q8t_A Beclin-1; autophagy, AT 32.7 1.8E+02 0.006 22.7 14.5 40 118-157 5-44 (96)
87 2l5g_A GPS2 protein, G protein 32.2 72 0.0025 21.6 4.3 26 139-164 9-34 (38)
88 3tul_A Cell invasion protein S 32.1 2.5E+02 0.0085 24.3 11.8 102 190-305 29-132 (158)
89 3swk_A Vimentin; cytoskeleton, 31.7 1.7E+02 0.0059 22.3 11.4 35 193-227 5-39 (86)
90 3i2w_A Syndapin, LD46328P; EFC 31.2 2.7E+02 0.0092 24.4 11.1 24 194-217 183-206 (290)
91 1x8y_A Lamin A/C; structural p 30.2 1.8E+02 0.0062 22.1 9.6 44 205-269 38-81 (86)
92 1txp_A HnRNP C, heterogeneous 30.0 41 0.0014 21.4 2.6 21 211-231 1-21 (28)
93 2x3v_A Syndapin I, protein kin 28.5 3.2E+02 0.011 24.5 18.9 88 120-215 130-217 (337)
94 3aco_A Pacsin2, protein kinase 28.3 3.4E+02 0.012 24.7 11.4 26 191-216 202-227 (350)
95 3trt_A Vimentin; cytoskeleton, 27.7 1.8E+02 0.006 21.2 8.9 34 193-226 33-66 (77)
96 3aco_A Pacsin2, protein kinase 27.6 2.9E+02 0.0098 25.2 9.2 22 213-234 203-224 (350)
97 3i00_A HIP-I, huntingtin-inter 27.1 2.6E+02 0.0088 22.9 11.4 69 109-180 14-82 (120)
98 2no2_A HIP-I, huntingtin-inter 26.5 2.4E+02 0.0084 22.4 13.0 56 214-275 23-85 (107)
99 4etp_A Kinesin-like protein KA 26.4 2.5E+02 0.0086 26.9 8.9 30 103-132 3-32 (403)
100 1vcs_A Vesicle transport throu 25.6 1.4E+02 0.0048 23.3 5.8 83 203-301 13-95 (102)
101 3sjb_C Golgi to ER traffic pro 25.0 2.1E+02 0.007 22.8 6.6 53 250-302 22-78 (93)
102 2w83_C C-JUN-amino-terminal ki 24.6 2.4E+02 0.0083 21.7 6.9 48 259-310 20-71 (77)
103 2v4h_A NF-kappa-B essential mo 22.6 3.2E+02 0.011 22.4 12.7 41 123-163 30-70 (110)
104 2i1j_A Moesin; FERM, coiled-co 22.5 1.6E+02 0.0054 29.7 6.9 38 143-180 333-370 (575)
105 1deb_A APC protein, adenomatou 21.4 2.3E+02 0.008 20.4 6.3 40 250-297 9-48 (54)
106 4dyl_A Tyrosine-protein kinase 21.0 5.3E+02 0.018 24.3 13.3 84 131-234 112-196 (406)
107 4gkw_A Spindle assembly abnorm 20.6 4E+02 0.014 22.7 21.6 44 253-297 114-157 (167)
108 2wq1_A General control protein 20.3 1.9E+02 0.0065 19.0 4.5 22 247-268 10-31 (33)
109 3a7p_A Autophagy protein 16; c 20.3 4.1E+02 0.014 22.8 10.3 53 105-157 70-122 (152)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.03 E-value=0.028 Score=61.03 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039546 113 NLVQEDLKKAKEKIELIE 130 (313)
Q Consensus 113 ~~~QeEL~k~KeQl~~AE 130 (313)
..++++|.+++..+...+
T Consensus 860 ~~L~~eL~el~~~L~~le 877 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAE 877 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.54 E-value=0.05 Score=59.15 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
+|..++..+.++..++...+..+..+..+|......+.++...+...
T Consensus 872 ~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l 918 (1184)
T 1i84_S 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444333
No 3
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.52 E-value=0.61 Score=38.23 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 114 LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRA 164 (313)
Q Consensus 114 ~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA 164 (313)
.-..+|..++.|+..+-..|+++.-|++.++..+++++.|.+.-..-+..+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~ 67 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345678888999999999999999999999999999999999865444333
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.14 E-value=2.9 Score=50.54 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=76.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG 182 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~ 182 (313)
.|..+-..|++.+|++|...+-+|+.+...=.+++.++...+..+++-+...+. .+..+.+..+-...+-.+.|..-
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~---~~~~~~~~~~ei~~~k~~~e~dL 2003 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE---LQVQLDVRNKEIAVQKVKAYADL 2003 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888888777666666666666555554443322211 12221111111111212222210
Q ss_pred hhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039546 183 IEASQ------KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEIL 256 (313)
Q Consensus 183 ~~~a~------~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeL 256 (313)
. .+. ..=..++.+|+.++.+....-+.|..+.+.|..++.+|+.++.+|..--..++....-......=+..|
T Consensus 2004 ~-~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2004 E-KAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000 001223444455555555555555555556666666666666655554444443332221111114445
Q ss_pred HHHHHHHHHHhh
Q 039546 257 SSELTRLKALLD 268 (313)
Q Consensus 257 t~EL~~lKe~Le 268 (313)
..|=.|=.+.++
T Consensus 2083 ~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2083 NSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhccccHHHHHH
Confidence 555444444333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.05 E-value=1.9 Score=38.93 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
..+++.++|+.+...+......+...+.....+-..+...+..++++...+
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~ 62 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV 62 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655555555555555444444444444444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.39 E-value=2.8 Score=37.83 Aligned_cols=68 Identities=7% Similarity=0.142 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039546 112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179 (313)
Q Consensus 112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElE 179 (313)
|..+-.+|..+..++...-..-..+..++...+..+..+...++...........+.+-...+....+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555577777777777766666666677777777777777777776666666666555555555543
No 7
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.56 E-value=5 Score=32.98 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 198 EAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD 268 (313)
Q Consensus 198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Le 268 (313)
..++..-..--++|.-++.++...-.+|..+++-|.. |..||++-+-+|+
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~---------------------Ld~EIatYRkLLE 129 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR---------------------LEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHC
Confidence 3333333334456677788888888889888887766 7888888888776
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.49 E-value=9.6 Score=41.49 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 039546 251 EKVEILSSELTRLKALLDSQR 271 (313)
Q Consensus 251 eKveeLt~EL~~lKe~Les~~ 271 (313)
++|..|..|...|+..++.-.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888777666544
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.22 E-value=6.8 Score=33.83 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 141 KEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQR 220 (313)
Q Consensus 141 E~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~k 220 (313)
+.-..+|..|+.+|..| ..-.+.+.-.+..||+.. .-+.-+|...+..|.....+|+.+-.+|.-
T Consensus 73 d~yEeqIk~L~~kLKEA-------E~RAE~AERsv~kLEk~i--------d~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEA-------ETRAEFAERSVTKLEKSI--------DDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777766 233456666677777641 225567888888888888888888888877
Q ss_pred H
Q 039546 221 I 221 (313)
Q Consensus 221 l 221 (313)
+
T Consensus 138 ~ 138 (155)
T 2efr_A 138 L 138 (155)
T ss_dssp H
T ss_pred c
Confidence 5
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.06 E-value=6.9 Score=32.01 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 198 EAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD 268 (313)
Q Consensus 198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Le 268 (313)
..++..-..--++|.-++.++...-.+|..+++-|.. |..||++-+-+|+
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~---------------------Ld~EIatYRkLLE 127 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA---------------------LDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHC
Confidence 3333333333456667788888888889888887766 7788888877775
No 11
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.39 E-value=9 Score=32.00 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIE-----------LIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~-----------~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~ 165 (313)
..||.||.++|+-|....-|.. +.+..|+|.+..+++-+..|.+|+.+|.++.++-.+.+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877775543 34555666666666666777777777777654443333
No 12
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=87.23 E-value=28 Score=35.46 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD----DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKN 278 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~Ae----eA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~ 278 (313)
+++..+.-+.+.+.+|+.+.+.+..++.+.+.=...+- --+++...+..++.--..+|..++.++|-.........
T Consensus 343 r~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~ 422 (551)
T 2b5u_A 343 RQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDAD 422 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHhhcccchh
Confidence 44456666666777777777777777776665443222 11344444555555555566666666666654443444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHhhhh
Q 039546 279 RELVLKLEEEIDTLKEELEKSRTFGKKING 308 (313)
Q Consensus 279 ~e~~~~le~e~~~L~~el~ka~~~e~k~~~ 308 (313)
+++-.-+| .-++.-.|.++.|.||.+
T Consensus 423 ~~ls~~me----~Rkq~e~k~k~ae~kl~~ 448 (551)
T 2b5u_A 423 AALSSAME----SRKKKEDKKRSAENNLND 448 (551)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhh----cccchhhhhhhhhhccch
Confidence 44433344 226666677888888865
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.14 E-value=18 Score=35.14 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKE 142 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~ 142 (313)
..++.++..+..++..+++.+...+........+++.
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456677777778888887777777766666666554
No 14
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.12 E-value=7.1 Score=30.30 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ 161 (313)
Q Consensus 118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q 161 (313)
||..++.|+..+-..|+++..|++.++-.+++++.|.+.-..-+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R 44 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR 44 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999854333
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.08 E-value=18 Score=32.16 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.-++..++..++.+|..|.+....-|.. .-.||+.+.+.+-+|..++...
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L 68 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRL 68 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888888888888877766654 4455666666666666555443
No 16
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.56 E-value=4.7 Score=31.34 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHH
Q 039546 216 QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEI 289 (313)
Q Consensus 216 ~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~ 289 (313)
.|++.|=.|+..+++-|++ ++-+. ..-..||++||.|-..|++.|++...+...-. ..|..||+|+
T Consensus 9 kevEnLi~EN~eLl~TKNa-Lnvvk------~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~-~ri~elEeEl 74 (77)
T 2w83_C 9 REVENLILENTQLLETKNA-LNIVK------NDLIAKVDELTCEKDVLQGELEAVKQAKLKLE-EKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3555555555555555554 22111 12246899999999999999999986555443 4556666554
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.53 E-value=34 Score=33.23 Aligned_cols=77 Identities=9% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD 268 (313)
Q Consensus 192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Le 268 (313)
-...++..++++++.-..++...+++++..+.+|+.+=.+...--++-++....-....+.+..++.+|..+.+-++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555566666666666666666666666665444444433334444444444455556667777776666554
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.49 E-value=16 Score=29.41 Aligned_cols=39 Identities=10% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA 231 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a 231 (313)
+..+|+.+|.+|...-..+..+..|+.+|..+|..--..
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENEL 41 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456788888888888888888999999998888654333
No 19
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.26 E-value=18 Score=29.12 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL-QEALMAQKRAEENSEIEKFRAVEM 178 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL-E~a~~~q~qA~e~sEl~k~Ra~El 178 (313)
.+..++.++..+..++.+++..|..-...+..|-.+......-+++|+.-| +.|+.=-..|....+..+.+...|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666777777777666666666666666666667777777666 344433333333344444444444
No 20
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.15 E-value=17 Score=27.48 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=45.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ 161 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q 161 (313)
.|...+..+++.+++.+..+..++..++....++-.|+..-++-+.-|...|+.+...-
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888877777777777777764433
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.61 E-value=1.4e+02 Score=36.61 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039546 138 DELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 138 ~ELE~AKr~ieeL~~KLE~a 157 (313)
+=|.+|..+|++|+.+|..-
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.97 E-value=38 Score=29.68 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHH
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELV 282 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~ 282 (313)
....-++-|...+..|++=-..+-..++..-....++.+-+ + .-..||..|..||.++|..+.-.. .+-....+.|
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~--~-elq~ri~~L~~El~~~k~~~~k~~-~e~r~L~Ekl 127 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI--G-DLQARITSLQEEVKHLKHNLEKVE-GERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33444556666677777666666666677666667766655 3 334589999999999998775544 3445556889
Q ss_pred HHHHHHHHHHHHH
Q 039546 283 LKLEEEIDTLKEE 295 (313)
Q Consensus 283 ~~le~e~~~L~~e 295 (313)
..||-|...+-.+
T Consensus 128 ~~lEKe~a~~eid 140 (168)
T 3o0z_A 128 NHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHH
Confidence 9999998888844
No 23
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=76.38 E-value=13 Score=32.65 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
-+.+|+.++.+|..+-+.|.+++.+|+.++.+++
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888888888888888877776664
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.21 E-value=29 Score=28.08 Aligned_cols=88 Identities=15% Similarity=0.271 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE 272 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~ 272 (313)
++.+|+.+....+....+|+.+...++.+|.-|+.-+..+.. +-.+|..||-.+|..-
T Consensus 25 LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~---------------------~E~di~~lrK~lD~~~- 82 (119)
T 3ol1_A 25 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREE---------------------AENTLQSFRQDVDNAS- 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------------------HHHHHHHhhhcccHHH-
Confidence 556666666666666777777777777777777653322211 2245666666555433
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhh-HhHhhhhh
Q 039546 273 TESIKNRELVLKLEEEIDTLKEELEKSRT-FGKKINGK 309 (313)
Q Consensus 273 ~e~~~~~e~~~~le~e~~~L~~el~ka~~-~e~k~~~~ 309 (313)
-.-..||..+++|+.||.=-+. +++.+.++
T Consensus 83 -------l~r~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 83 -------LARLDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123466666666666654433 35555554
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.68 E-value=22 Score=29.84 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 108 LQAQLNLVQEDLKKAKEKIELIEK 131 (313)
Q Consensus 108 lE~QL~~~QeEL~k~KeQl~~AE~ 131 (313)
++.+|....+|+-.+|.+|..+..
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433333
No 26
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.56 E-value=8.5 Score=33.63 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039546 190 EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS 269 (313)
Q Consensus 190 ~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les 269 (313)
..+-++++..++++|-..+.+| +++|...+.||..++...+. ...+|..|..||..++..|..
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~L---r~ql~akr~EL~aL~~a~~~--------------DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSAL---RQQLISKRYEYNALLTASSP--------------DTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTSSSC--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCC--------------CHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888877 56777888888766543221 234555566666666666655
Q ss_pred hH
Q 039546 270 QR 271 (313)
Q Consensus 270 ~~ 271 (313)
.+
T Consensus 132 ~R 133 (175)
T 3lay_A 132 QR 133 (175)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 27
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.41 E-value=32 Score=29.11 Aligned_cols=41 Identities=10% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN 233 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~ 233 (313)
.-.+|+..+.+|......|..+..|+.+|..+|..--..+.
T Consensus 23 ~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~ 63 (135)
T 2e7s_A 23 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRT 63 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666667777788888888877765444333
No 28
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.02 E-value=34 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 252 KVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 252 KveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
|+..|-.++....+.|......=. .......+.|.++.+|+..|+
T Consensus 52 Kiq~lE~eld~~~e~l~~a~~kLe-~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 52 KLKGTEDEVEKYSESVKEAQEKLE-QAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554442211 122456778889999988775
No 29
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=71.73 E-value=6.3 Score=31.51 Aligned_cols=69 Identities=23% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHhhhhhhhHHHHHHHHHHHHHHHH
Q 039546 218 LQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA---LLDSQRETESIKNRELVLKLEEEIDTLKE 294 (313)
Q Consensus 218 L~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe---~Les~~~~e~~~~~e~~~~le~e~~~L~~ 294 (313)
|+.||+||+.+..+-+..-.+.+ +.-.-|+.-=-.|+..++. .|+..| ..+-.+-|+||..||.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~------~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h-------~kmKq~YEeEI~rLr~ 82 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQ------KDYDFKMNQQLAEMQQIRNTVYERELTH-------RKMKDAYEEEIKHLKL 82 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc------chHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 45566777765544333221211 1333444444456777776 455555 5677788999999999
Q ss_pred HHHhh
Q 039546 295 ELEKS 299 (313)
Q Consensus 295 el~ka 299 (313)
+|+.-
T Consensus 83 eLe~r 87 (92)
T 3vp9_A 83 GLEQR 87 (92)
T ss_dssp HHTC-
T ss_pred HHHHc
Confidence 99863
No 30
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.61 E-value=35 Score=26.89 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 251 EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 251 eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
.|+..|-.+|..+.+.|..+...=.. ......+.|.++.+|+..|+
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLee-~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLLF-AEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655432222 22457788889999988775
No 31
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=71.14 E-value=18 Score=32.66 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
+.+++.++.+|...-+.|.++..+|..++.+++
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666776776666666666666666655554
No 32
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=70.83 E-value=68 Score=29.88 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 190 EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQE 224 (313)
Q Consensus 190 ~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqE 224 (313)
+..+....+.|...|..-+.+....++||...|-+
T Consensus 179 EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~ 213 (279)
T 3qwe_A 179 REEAQAKAQEAEALYQACVREANARQQDLEIAKQR 213 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45688888999999999888888888888776644
No 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.30 E-value=1.3e+02 Score=32.82 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQEL 225 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl 225 (313)
.+++..+++|.....++....+.+++++.++
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 34
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=69.37 E-value=15 Score=33.54 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIEL 128 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~ 128 (313)
.+++.+|..++.+|..++.++..
T Consensus 66 ~~~~~~l~~~~a~l~~~~a~l~~ 88 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQAQLVA 88 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777666655554433
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.09 E-value=18 Score=29.85 Aligned_cols=44 Identities=27% Similarity=0.513 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546 253 VEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~ 300 (313)
|+.|..||.+|+..|+.-. .++.-+|..|+.-|..|..+|.-.+
T Consensus 17 Ie~Lkreie~lk~ele~l~----~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK----TESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777776 6666667777777777777776654
No 36
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=66.61 E-value=17 Score=32.87 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKE 132 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~ 132 (313)
.+++.+|..++.+|..++.++..++..
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~ 91 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAE 91 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777666666554443
No 37
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=66.18 E-value=22 Score=25.43 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
..++.++...-.|...-+..|..+.+||.+|+.+++.+
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888999999999999999999999999999865
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.16 E-value=45 Score=26.05 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=52.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElE 179 (313)
|..-|..+.+.+.+....+..++..++....++-.|+..-++.+.-+...|+.++..-..+....+.....+.+.|
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888888888888888887777777777777777765555555555555554444444
No 39
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=65.55 E-value=71 Score=28.09 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 039546 119 LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIE 198 (313)
Q Consensus 119 L~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE 198 (313)
.+++++....+......+..+|+++|+.-+.+-..++.+...-..+..+.-+-+ .++++. ..+-...+..++
T Consensus 111 rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~---~~~eK~-----~~k~~~~~~~~~ 182 (301)
T 2efk_A 111 RKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATK---ADVEKA-----KQQAHLRSHMAE 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCH---HHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCH---HHHHHH-----HHHHHHHHHHHH
Confidence 345556667777777778888888888888887777776544443332211000 122221 111122344555
Q ss_pred HHHHHHHHHHHHHHHH
Q 039546 199 AVRNQHALDVASLLST 214 (313)
Q Consensus 199 ~ar~qha~~~AeL~Sa 214 (313)
.+++.|...+..+...
T Consensus 183 ~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 183 ESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555554
No 40
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=65.47 E-value=36 Score=30.90 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQE 217 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~E 217 (313)
+.+|+.++.+....-+.|..++..
T Consensus 128 ~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 128 KAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.72 E-value=1.1e+02 Score=31.22 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHhhhhhhhHHH
Q 039546 206 LDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSE----LTRLKALLDSQRETESIKNREL 281 (313)
Q Consensus 206 ~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~E----L~~lKe~Les~~~~e~~~~~e~ 281 (313)
..|.+|..-.++|++.+.+....+......+++... .+..|...+.+++.| |..||+.|++-. ..
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~---q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------sn 132 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFS---SANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QH 132 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHH---HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---hhhccchhHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 344445555555666666666666666666654222 123555566555544 455555555444 34
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 039546 282 VLKLEEEIDTLKEELEKS 299 (313)
Q Consensus 282 ~~~le~e~~~L~~el~ka 299 (313)
|+.|+.-|..++.+|++-
T Consensus 133 IrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555543
No 42
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.26 E-value=57 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
.++.-+.++....++|.++++.+...+..+...-......-....+|...|+.
T Consensus 7 ~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678889999999999999988877765544444444444444444443
No 43
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=64.19 E-value=18 Score=29.23 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546 259 ELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFG 303 (313)
Q Consensus 259 EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e 303 (313)
=+..|+++|+-...- ..+.-..|.+|+.||-.|+++|+.+..-+
T Consensus 47 TV~tL~~SL~kekaq-~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 47 TVVTLQESLEKKVSQ-ALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777655432 22223569999999999999999987544
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.61 E-value=58 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
|+.+++.++..-.....+|..++.||..++..+.
T Consensus 13 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq 46 (129)
T 3tnu_B 13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQ 46 (129)
T ss_dssp ---------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555666677777766665553
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.05 E-value=1e+02 Score=29.11 Aligned_cols=43 Identities=28% Similarity=0.351 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 256 LSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 256 Lt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
-+.-+.+|+++|+-... + .-..|..||.||-.|+++|+.+..-
T Consensus 423 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 423 ANHTVMALMASLDAEKA---Q-GQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457888888887662 2 2257999999999999999887654
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=62.09 E-value=17 Score=28.50 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL 154 (313)
Q Consensus 116 QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL 154 (313)
+.+|..++.++..+-..|+++..|++.....+++++.||
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345555556666666666666666665555555555543
No 47
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=61.79 E-value=73 Score=26.90 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=23.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEA 150 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL 150 (313)
+++.|+.+|+.+++-|..+...|..|+ ++.+|.+.+.+.++.-
T Consensus 4 ri~llEeeLer~eerl~~a~~kLeeae----k~adE~eR~~k~lE~r 46 (147)
T 2b9c_A 4 RIQLVEEELDRAQERLATALQKLEEAE----KAADESERGMKVIESR 46 (147)
T ss_dssp -------CCGGGGTTTTHHHHHHHHHH----HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 566677777777777777777777765 3456666666655443
No 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=59.45 E-value=90 Score=27.25 Aligned_cols=101 Identities=9% Similarity=0.100 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA 185 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~ 185 (313)
..|+.+-+.+++|+-.+.-+|..=-..+.+.-+-.-.....|..|...|+.......++..+----.-++-.||+.....
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666777777777766666666666655556667777777777776666666666665566666666642111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 039546 186 SQKKEEEWQKEIEAVRNQHALDVAS 210 (313)
Q Consensus 186 a~~~~~a~k~ELE~ar~qha~~~Ae 210 (313)
+-.+-=+|-+++.+|.--+.+
T Consensus 138 ----eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 138 ----EIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHHH
Confidence 112335566777777655443
No 49
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=58.90 E-value=19 Score=30.12 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 039546 214 TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETES 275 (313)
Q Consensus 214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~ 275 (313)
-++||++|...||. +.-|.+++..-.++..+++ ...-++.|+++|.+||..-....-.++
T Consensus 8 ~K~Eiq~L~drLD~-~~rKlaaa~~rgd~~~i~q-f~~E~~~l~k~I~~lk~~q~~~lske~ 67 (123)
T 2lf0_A 8 EKNEIKRLSDRLDA-IRHQQADLSLVEAADKYAE-LEKEKATLEAEIARLREVHSQKLSKEA 67 (123)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHSCTTTCTTHHHH-HHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 37889999888875 5566666666667776663 556688899999999987666554444
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.35 E-value=59 Score=26.48 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
|+.+++.++..-.....+|..++.||..++..+.
T Consensus 15 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq 48 (131)
T 3tnu_A 15 FFTKTEELNREVATNSELVQSGKSEISELRRTMQ 48 (131)
T ss_dssp --------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555556667777777766665553
No 51
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=58.26 E-value=52 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
...|+++|+..+..--+.|.... ..|..|.--|+.|..+|+.
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k--------~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAK--------QESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHh
Confidence 34567777766666555555443 2244444444444444443
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.53 E-value=24 Score=29.43 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 039546 280 ELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 280 e~~~~le~e~~~L~~el~ka~~~ 302 (313)
+.|.+|+.||..|+++|+++..-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777666543
No 53
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=56.97 E-value=93 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKE 132 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~ 132 (313)
.+++.+|..++.+|..++.++..+...
T Consensus 56 ~~~~~~l~~a~a~l~~a~a~l~~a~~~ 82 (277)
T 2f1m_A 56 ATYQATYDSAKGDLAKAQAAANIAQLT 82 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887777777665543
No 54
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=53.38 E-value=1.7e+02 Score=28.42 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLST 214 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sa 214 (313)
.+.+++.+++.|...+..+...
T Consensus 197 ~~~~~~~a~~~Y~~~v~~~n~~ 218 (486)
T 3haj_A 197 CKQDVLKTKEKYEKSLKELDQG 218 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655555443
No 55
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.30 E-value=93 Score=29.46 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039546 140 LKEAQRVAEEANEKLQE 156 (313)
Q Consensus 140 LE~AKr~ieeL~~KLE~ 156 (313)
...+.+++-.|-..|+.
T Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (471)
T 3mq9_A 420 AATANHTVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHH
Confidence 33455555555555544
No 56
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.07 E-value=25 Score=35.57 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ 161 (313)
Q Consensus 118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q 161 (313)
+..++.++|...+..-.++..+|.++..+++.|-.++..++.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666666666654443
No 57
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.85 E-value=81 Score=23.82 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039546 196 EIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQ 270 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~ 270 (313)
|++..+..-..--++|.-++.++...-.+|..+++-|.. |..||+.-+-+|+..
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~---------------------Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLA---------------------LDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcC
Confidence 334344344444466777788888888899888887766 778999988888743
No 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.51 E-value=1e+02 Score=24.95 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 255 ILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 255 eLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
+|...|..|.+.|+..-+.-.. ....-.+|+.+++.|+.+|+-
T Consensus 80 eLe~~l~el~~rleeeee~~~~-L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAE-LTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666654432222 224567889999999888764
No 59
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.25 E-value=34 Score=28.97 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKV 134 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~Ka 134 (313)
.++|+.+|+.++..|...+..+..-+..+.
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~~~le~l~~ 32 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAIENYNQLKE 32 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666555555555444443
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.23 E-value=1.3e+02 Score=25.90 Aligned_cols=32 Identities=31% Similarity=0.257 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKV 134 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~Ka 134 (313)
.+.+.|+..|+.+..+|...+..+..-|..+.
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~ 44 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLKE 44 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999877776666555553
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.80 E-value=96 Score=24.33 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEM 178 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~El 178 (313)
|..-|..+.+.+++....+..++..++....++-.|+..-.+-+.-+...|+.++..-..+....+.....+.+.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777666666666666666554444444444444444433
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.21 E-value=66 Score=30.62 Aligned_cols=52 Identities=25% Similarity=0.144 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.++|.+.+.+..|++.+.++.+.-+..+.+.-.++++....+++++.+|.++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 3444555555666666777777777777777777777777777777777665
No 63
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=47.77 E-value=1.4e+02 Score=26.04 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMA 160 (313)
Q Consensus 121 k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~ 160 (313)
++++.+..+......+..+|+++|+.-+.+-..++.++..
T Consensus 120 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 120 SNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666655433
No 64
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=47.53 E-value=20 Score=29.93 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhhHhhhh----hhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 255 ILSSELTRLKALLDSQRETES----IKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 255 eLt~EL~~lKe~Les~~~~e~----~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
.|..||-.|..-||.+.-..+ .+..++|.++..|+..|..+|+.-+.-
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888876544 556689999999999999999887664
No 65
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=47.15 E-value=1.3e+02 Score=25.35 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHhHhhhhhcc
Q 039546 238 HADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS 311 (313)
Q Consensus 238 ~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e~k~~~~e~ 311 (313)
.|++|.+-......|+-.+..+|.+..+-++.+- ..|..|+.++..+-..|..-.+.+++....|.
T Consensus 67 ~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE--------~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~ 132 (147)
T 2b9c_A 67 IAEDADRKYEEVARKLVIIESDLERAEERAELSE--------GKCAELEEELKTVTNNLKSLEDKVEELLSKNY 132 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 3445555555555555555555555555444433 46888999999888888887777777665543
No 66
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=47.01 E-value=1.3e+02 Score=25.21 Aligned_cols=33 Identities=3% Similarity=0.063 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 196 EIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 196 ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
++-.-+.||..-...|..++.+-+.++..|-.-
T Consensus 120 ~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~ 152 (180)
T 1s94_A 120 DLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDR 152 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455688888888888999999998887543
No 67
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=45.47 E-value=1.2e+02 Score=24.46 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKI 126 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl 126 (313)
..|+.||.++|+-|....-|.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQA 41 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQA 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887666554
No 68
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=45.12 E-value=2.1e+02 Score=27.14 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 039546 119 LKKAKEKIELIEKEKVQAI-DELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEI 197 (313)
Q Consensus 119 L~k~KeQl~~AE~~KaqAl-~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~EL 197 (313)
-+++.+....+.....+++ .+|+++|+.-+.+-...+.|...-..+..+ .++++. ..+-.-...++
T Consensus 114 rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~--------ke~eK~-----~~k~~k~~~~~ 180 (406)
T 4dyl_A 114 RKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD--------KDRDKA-----KDKYVRSLWKL 180 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC-----------------CHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------chHHHH-----HHHHHHHHHHH
Confidence 4566666777788888888 788888888888877777764322222222 222321 12223356677
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039546 198 EAVRNQHALDVASLLSTT 215 (313)
Q Consensus 198 E~ar~qha~~~AeL~Sak 215 (313)
..+++.|...+..+....
T Consensus 181 ~~a~neY~~~l~~~N~~~ 198 (406)
T 4dyl_A 181 FAHHNRYVLGVRAAQLHH 198 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777665544
No 69
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=45.01 E-value=1.3e+02 Score=25.16 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 249 ~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
-..+|++|..+|+.+...+........-.. -....|+.-+-.-+.||+|...-
T Consensus 66 L~~ki~eL~~kvA~le~e~~~~e~~~~~~~-~~~e~le~~la~KkAEleKtqa~ 118 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLKAAEENNNVED-YFKEGLEKTIAAKKAELEKTEAD 118 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----CH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999988876543221112 44566677777777888776543
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.73 E-value=96 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039546 139 ELKEAQRVAEEANEKLQEAL 158 (313)
Q Consensus 139 ELE~AKr~ieeL~~KLE~a~ 158 (313)
|++.|.-.++.+..+|+.+.
T Consensus 14 e~d~a~~~~~~~e~~l~~~e 33 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAE 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.45 E-value=1.2e+02 Score=25.19 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039546 110 AQLNLVQEDLKKAKEKIELI 129 (313)
Q Consensus 110 ~QL~~~QeEL~k~KeQl~~A 129 (313)
.+|..++++...+..++..-
T Consensus 68 dEl~k~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENK 87 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444443
No 72
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=42.16 E-value=1.4e+02 Score=25.77 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546 136 AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA 181 (313)
Q Consensus 136 Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~ 181 (313)
++.|..++-...+....++..++..-+.+..-..-.+.|+.+|.-+
T Consensus 53 al~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~ 98 (158)
T 3tul_A 53 ALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPA 98 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445455555555555555555444444444444445555555543
No 73
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=41.66 E-value=1.2e+02 Score=23.52 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAMTT 229 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~ 229 (313)
.++-.-+.||..-.-.|.-++.+-+.+..+|-.-+
T Consensus 88 ~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~ 122 (127)
T 1ez3_A 88 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC 122 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888899999999999998886543
No 74
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.23 E-value=1.8e+02 Score=24.99 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 197 IEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
|+..+.+|.....++..+..|+.+|..+|..
T Consensus 39 lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~ 69 (154)
T 2ocy_A 39 YNQLKEDYNTLKRELSDRDDEVKRLREDIAK 69 (154)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344444444445555566666666666644
No 75
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=40.22 E-value=3.2e+02 Score=27.91 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 111 QLNLVQEDLKKAKEKI------ELIEKEKVQAIDELKEAQRVAEEANEKLQ 155 (313)
Q Consensus 111 QL~~~QeEL~k~KeQl------~~AE~~KaqAl~ELE~AKr~ieeL~~KLE 155 (313)
||.+=|+|-++.+... +.||..=.++-.||+.+.+.+......+.
T Consensus 295 elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 295 QVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666555554 55666555666666666665555555544
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=39.15 E-value=2e+02 Score=25.36 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTT---DAKNQALSHADDATKIAE-LHVEKVEILSSELTRLKAL 266 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~---~ak~aA~~~AeeA~~aae-~~~eKveeLt~EL~~lKe~ 266 (313)
..|+..+...+.++...+..|..=...|+..+..|..-+ +-.|--+-++.-+..++- .-..|.+.. +.-...
T Consensus 73 e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a----iEr~al 148 (189)
T 2v71_A 73 EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA----IERNAF 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH----HHHHHH
Confidence 458888888888877776666554444444444333222 222223333332222221 111122222 222233
Q ss_pred hhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 267 LDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 267 Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
|++..+-. ....+.+..|..|+..||++|.
T Consensus 149 LE~El~EK-e~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 149 LESELDEK-ESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHH-HHHHCCC---------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444321 1223557788888888888874
No 77
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.73 E-value=1.4e+02 Score=23.20 Aligned_cols=36 Identities=8% Similarity=0.260 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 114 LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE 156 (313)
Q Consensus 114 ~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~ 156 (313)
.+++||.+++.-..+.+ .+|..+.....+|-+.++.
T Consensus 28 ~i~EELs~vr~~ni~~e-------skL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFA-------SQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 46666666666555555 3455555555555444433
No 78
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.67 E-value=1.4e+02 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 195 KEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
.++...+.++...-..+.....++..++.+|.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444
No 79
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=36.15 E-value=1.8e+02 Score=23.80 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 039546 108 LQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELK----EAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGI 183 (313)
Q Consensus 108 lE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE----~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~ 183 (313)
.-+|.+++|.++..++++|...-..|....+.+. ..+..|..|......+ +.-+.+|.++-.
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~s--------------E~~L~~Lqq~fs 69 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQAS--------------EILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 3467788888888888888888777777666653 4566777776655544 334455655421
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546 184 EASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT 228 (313)
Q Consensus 184 ~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~ 228 (313)
+-. ..++.+-..-..+..-|..||.+|+.+-+-+
T Consensus 70 ---q~q--------~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 70 ---QAK--------RDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHTC-----------
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 111 3344454555555555667777777665543
No 80
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=34.11 E-value=2.5e+02 Score=24.93 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039546 129 IEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDV 208 (313)
Q Consensus 129 AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~ 208 (313)
+.........+++++|+.-+.+-..++.+......+..+.-+- -.++++. +.+-.-++.++..+++.|...+
T Consensus 148 ~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~---~k~~eK~-----~~k~~k~~~~~~~a~~~Y~~~v 219 (312)
T 3abh_A 148 AQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLN---PEQLKKL-----QDKIEKCKQDVLKTKEKYEKSL 219 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCC---SHHHHGG-----GTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666655555532221121111000 0333332 2222346777888888888877
Q ss_pred HHHHHHH
Q 039546 209 ASLLSTT 215 (313)
Q Consensus 209 AeL~Sak 215 (313)
..|....
T Consensus 220 ~~~n~~~ 226 (312)
T 3abh_A 220 KELDQGT 226 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 6665543
No 81
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.62 E-value=2.1e+02 Score=24.69 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh-HhHhhhh
Q 039546 253 VEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT-FGKKING 308 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~-~e~k~~~ 308 (313)
+..|..+|...+..|..-..++.- ....|.+|-.||..|+.+|..... +..++.+
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a~~~-DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTASSP-DTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666554433221 224588899999999999988776 3555543
No 82
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=33.35 E-value=1.3e+02 Score=21.43 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039546 209 ASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS 269 (313)
Q Consensus 209 AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les 269 (313)
++|.-++.++...-++|..+++-|.. |..||++-+-+|+.
T Consensus 14 ~el~~~r~e~~~q~~eYq~LlniK~~---------------------Le~EIatYRkLLEg 53 (59)
T 1gk6_A 14 SKNYHLENEVARLKKLVGDLLNVKMA---------------------LDIEIATYRKLLEG 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHcc
Confidence 56667888888888899888887766 77888888888874
No 83
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.14 E-value=1.7e+02 Score=22.77 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAE 148 (313)
Q Consensus 107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ie 148 (313)
.++..|..+..+=..+..+|...|..+..+-.||........
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555555555555556666666666555555554444333
No 84
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.98 E-value=4e+02 Score=26.96 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 195 KEIEAVRNQHALDVASLLS-TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL 266 (313)
Q Consensus 195 ~ELE~ar~qha~~~AeL~S-ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~ 266 (313)
+-++.-+..|.--+.-|.. -.+|-.++.+|.+.+++.|.. +.+.-.=+.-..+++.|..||..|+..
T Consensus 515 ~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ-----EQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555544 334455555666666655554 112222233445556666666666654
No 85
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=32.97 E-value=62 Score=29.28 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
.+.+|+.++.+|..+-+.|..+..+|..++.++..
T Consensus 127 s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~ 161 (359)
T 3lnn_A 127 AKRDFEQAQSDYDQAASESQRADARLAQLGAKGGG 161 (359)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 34577888888888888888888888888776653
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=32.72 E-value=1.8e+02 Score=22.73 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
|+..+...|...+.....++.||+..-+.-+.+...|...
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455566667777788888888888887777777777665
No 87
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.21 E-value=72 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 139 ELKEAQRVAEEANEKLQEALMAQKRA 164 (313)
Q Consensus 139 ELE~AKr~ieeL~~KLE~a~~~q~qA 164 (313)
=|+++|.+|.-|..+|+..+.+++|.
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888777764
No 88
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=32.10 E-value=2.5e+02 Score=24.28 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039546 190 EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS 269 (313)
Q Consensus 190 ~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les 269 (313)
-..|++-+++-++.|.--..+...+-.|-+..-.-|...+.-=+.+=++ +..|..-|.+....|+.
T Consensus 29 la~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~--------------~d~lekKl~~aq~kL~~ 94 (158)
T 3tul_A 29 LAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSV--------------YDAATKKLTQAQNKLQS 94 (158)
T ss_dssp HHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 4679998888888777666666666666555555555544444333222 33334444444444433
Q ss_pred hHh-hhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHhHh
Q 039546 270 QRE-TES-IKNRELVLKLEEEIDTLKEELEKSRTFGKK 305 (313)
Q Consensus 270 ~~~-~e~-~~~~e~~~~le~e~~~L~~el~ka~~~e~k 305 (313)
-.- +-. ...-..+.+|..|+..+++.+++|-++-++
T Consensus 95 L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~ 132 (158)
T 3tul_A 95 LDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVK 132 (158)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 222245888999999999999999877554
No 89
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.70 E-value=1.7e+02 Score=22.33 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM 227 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~ 227 (313)
++.+++.+....+....+++.+...++.+|.-|+.
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666656666666666666666666666654
No 90
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=31.25 E-value=2.7e+02 Score=24.43 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 194 QKEIEAVRNQHALDVASLLSTTQE 217 (313)
Q Consensus 194 k~ELE~ar~qha~~~AeL~Sak~E 217 (313)
..+++.+++.|...+..+...+.+
T Consensus 183 ~~~~~~a~~~Y~~~v~~~n~~~~~ 206 (290)
T 3i2w_A 183 KDQVQKCREKYEQAIAEITKYNSV 206 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456778888888866666555443
No 91
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.21 E-value=1.8e+02 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039546 205 ALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS 269 (313)
Q Consensus 205 a~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les 269 (313)
..--++|.-++.++...-++|..+++-|.. |..||++-+-+|+.
T Consensus 38 ~~lE~el~~~r~e~~~ql~EYq~LlnvK~~---------------------Le~EIatYRkLLEG 81 (86)
T 1x8y_A 38 AEKEREMAEMRARMQQQLDEYQELLDIKLA---------------------LDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHcC
Confidence 333456667788888888888888887766 78899888888874
No 92
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=30.00 E-value=41 Score=21.43 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 039546 211 LLSTTQELQRIKQELAMTTDA 231 (313)
Q Consensus 211 L~Sak~EL~klrqEl~~~~~a 231 (313)
|.+.|.||.++++..+++++.
T Consensus 1 lQ~IkkELtQIK~kvDsLLe~ 21 (28)
T 1txp_A 1 IQAIKKELTQIKQKVDSLLEN 21 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999988764
No 93
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=28.48 E-value=3.2e+02 Score=24.48 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 039546 120 KKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEA 199 (313)
Q Consensus 120 ~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ 199 (313)
+++...+..+.........+|+++|+.-+.+-..++.+......+..+..+ -..++++. ..+-.-++.++..
T Consensus 130 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~---s~k~~eK~-----~~k~~k~~~~~~~ 201 (337)
T 2x3v_A 130 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSV---TPEQQKKL-----VDKVDKCRQDVQK 201 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCC---CHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCccc---CHHHHHHH-----HHHHHHHHHHHHH
Confidence 333444555666666777777777777777776666654332222211100 01222221 1222335566667
Q ss_pred HHHHHHHHHHHHHHHH
Q 039546 200 VRNQHALDVASLLSTT 215 (313)
Q Consensus 200 ar~qha~~~AeL~Sak 215 (313)
+++.|...+..+....
T Consensus 202 a~~~Y~~~v~~~n~~~ 217 (337)
T 2x3v_A 202 TQEKYEKVLEDVGKTT 217 (337)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777777665554443
No 94
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=28.31 E-value=3.4e+02 Score=24.65 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 191 EEWQKEIEAVRNQHALDVASLLSTTQ 216 (313)
Q Consensus 191 ~a~k~ELE~ar~qha~~~AeL~Sak~ 216 (313)
.-++.+++.+++.|...+..|...+.
T Consensus 202 ~k~~~~~~~a~~~Y~~~v~~~n~~~~ 227 (350)
T 3aco_A 202 EKCKQDVLKTKEKYEKSLKELDQGTP 227 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777776666555443
No 95
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.75 E-value=1.8e+02 Score=21.17 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226 (313)
Q Consensus 193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~ 226 (313)
|+.+++.++..-.....+|..++.||..++..+.
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq 66 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQ 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5555666665555556666667777666665553
No 96
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=27.63 E-value=2.9e+02 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 039546 213 STTQELQRIKQELAMTTDAKNQ 234 (313)
Q Consensus 213 Sak~EL~klrqEl~~~~~ak~a 234 (313)
-...++.+.+.+|...+..=+.
T Consensus 203 k~~~~~~~a~~~Y~~~v~~~n~ 224 (350)
T 3aco_A 203 KCKQDVLKTKEKYEKSLKELDQ 224 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666555554444
No 97
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.09 E-value=2.6e+02 Score=22.85 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546 109 QAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 109 E~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
..+++.++.|+..++-.++..-..-.+++.+ =+..|..|...|+......+.|..+.+.-+.....++.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~q---l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQ---LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999888875555555555 56788999999999887778888777766666666554
No 98
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=26.55 E-value=2.4e+02 Score=22.43 Aligned_cols=56 Identities=25% Similarity=0.397 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHhhhh
Q 039546 214 TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTR-------LKALLDSQRETES 275 (313)
Q Consensus 214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~-------lKe~Les~~~~e~ 275 (313)
+..|+.+.+.+|..-++.=. ..+..-++.....|+.|-.||.. +++.|+....++.
T Consensus 23 ~~~e~e~~k~eL~~~~~~~~------~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~ 85 (107)
T 2no2_A 23 AQVDLEREKKELEDSLERIS------DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEA 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444311 22222244444555555555555 7777776664333
No 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.43 E-value=2.5e+02 Score=26.92 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=14.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 103 VKGSELQAQLNLVQEDLKKAKEKIELIEKE 132 (313)
Q Consensus 103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~ 132 (313)
+++.+++.+|..+++++.+..+.+..++..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444443
No 100
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.55 E-value=1.4e+02 Score=23.29 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHH
Q 039546 203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELV 282 (313)
Q Consensus 203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~ 282 (313)
+|...+++|...-..|.. ..-+.|...+.+++..+.-|+ +=+..|..|+..+-- +.-..-...|
T Consensus 13 df~~l~~~i~~kl~~i~~------~~geerk~~i~~ie~~l~EA~---ell~qMelE~r~~p~-------~~R~~~~~kl 76 (102)
T 1vcs_A 13 DFAVLTAEITSKIARVPR------LPPDEKKQMVANVEKQLEEAR---ELLEQMDLEVREIPP-------QSRGMYSNRM 76 (102)
T ss_dssp HHHHHHHHHHHHHHHGGG------SCTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHTTSCT-------TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc------cCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCH-------HhHHHHHHHH
Confidence 455555555444443322 134677777777776663332 224445555544321 1112334568
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 039546 283 LKLEEEIDTLKEELEKSRT 301 (313)
Q Consensus 283 ~~le~e~~~L~~el~ka~~ 301 (313)
.....++..|+.+|.++.+
T Consensus 77 r~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 77 RSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888899999999887654
No 101
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.98 E-value=2.1e+02 Score=22.79 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH--hhhh--hhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546 250 VEKVEILSSELTRLKALLDSQR--ETES--IKNRELVLKLEEEIDTLKEELEKSRTF 302 (313)
Q Consensus 250 ~eKveeLt~EL~~lKe~Les~~--~~e~--~~~~e~~~~le~e~~~L~~el~ka~~~ 302 (313)
..+...|..||..|+.++.+.- |-=+ -..+..+.||.+|+..|+..|..++..
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777665432 2111 223356777777777777777766643
No 102
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.62 E-value=2.4e+02 Score=21.73 Aligned_cols=48 Identities=25% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH----hHhhhhhc
Q 039546 259 ELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF----GKKINGKR 310 (313)
Q Consensus 259 EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~----e~k~~~~e 310 (313)
||-.+|..|+-.. ..--..|..|-.|.+.|+.||+..... +.++.++|
T Consensus 20 eLl~TKNaLnvvk----~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 20 QLLETKNALNIVK----NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777666 333355777888999999999887655 45555554
No 103
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.61 E-value=3.2e+02 Score=22.35 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 123 KEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR 163 (313)
Q Consensus 123 KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~q 163 (313)
+.+|..||..=..-..+.++.|..+..+...||....=+.|
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQ 70 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQ 70 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333334555555666666666666655444433
No 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.52 E-value=1.6e+02 Score=29.68 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546 143 AQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180 (313)
Q Consensus 143 AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq 180 (313)
+-+.-.+|...|...+.+-.+|.++..-..-.+.+|+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e 370 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEE 370 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445666667777766667776666666666666643
No 105
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.41 E-value=2.3e+02 Score=20.36 Aligned_cols=40 Identities=33% Similarity=0.452 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 250 VEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 250 ~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
...|+.|..|=..|+-.|..- .-.++|||.|.+.+|.=|.
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dN--------S~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDN--------SNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhh--------HHHHHHHHhhhhhHHHHHH
Confidence 456888888888888877543 3569999999999886554
No 106
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=21.02 E-value=5.3e+02 Score=24.29 Aligned_cols=84 Identities=8% Similarity=0.100 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 131 KEKVQAIDELKEAQRVAEEAN-EKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVA 209 (313)
Q Consensus 131 ~~KaqAl~ELE~AKr~ieeL~-~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~A 209 (313)
..+....++...+.+.+.... ..|+.+...=.++-.+.+.++.+..+... ..+++-++.+|..
T Consensus 112 ~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k-------------~ke~eK~~~k~~k--- 175 (406)
T 4dyl_A 112 QLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASK-------------DKDRDKAKDKYVR--- 175 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC----------------------CHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------CchHHHHHHHHHH---
Confidence 344455555555555555555 55655554444444444444433333211 1455556666555
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546 210 SLLSTTQELQRIKQELAMTTDAKNQ 234 (313)
Q Consensus 210 eL~Sak~EL~klrqEl~~~~~ak~a 234 (313)
+..++.+.+.+|-..+..-+.
T Consensus 176 ----~~~~~~~a~neY~~~l~~~N~ 196 (406)
T 4dyl_A 176 ----SLWKLFAHHNRYVLGVRAAQL 196 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777766666553
No 107
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=20.56 E-value=4e+02 Score=22.75 Aligned_cols=44 Identities=27% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039546 253 VEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELE 297 (313)
Q Consensus 253 veeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ 297 (313)
|+-||.=|..|+-.|+...= +.++.-.-..+|.-|+..++..|.
T Consensus 114 Ve~LT~TiG~LrKELEdEkl-K~~E~MdSFE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 114 VESLTETIGILRKELENEKL-KAAENMDSFEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHhHHHHHH
Confidence 56677777777777766552 123333445677778888877764
No 108
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.35 E-value=1.9e+02 Score=19.03 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039546 247 ELHVEKVEILSSELTRLKALLD 268 (313)
Q Consensus 247 e~~~eKveeLt~EL~~lKe~Le 268 (313)
+..-.+..+|..||.++++.|.
T Consensus 10 Eell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 10 EENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhc
Confidence 3444555667778888887764
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.34 E-value=4.1e+02 Score=22.78 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
+..|+.+|..++..+...++.+..-...=.-+.+|+..-+-++.-+..+|...
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444444445555555555555555555544
Done!