Query 039546
Match_columns 313
No_of_seqs 109 out of 119
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 18:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039546.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039546hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 52.1 52 0.0038 26.0 22.0 53 120-172 100-152 (288)
2 d1qvra2 c.37.1.20 (A:149-535) 48.8 19 0.0014 32.3 7.3 17 281-297 314-330 (387)
3 d1io1a_ e.32.1.1 (A:) Phase 1 43.8 50 0.0036 26.5 8.7 64 233-298 6-69 (395)
4 d2efka1 a.238.1.4 (A:10-288) C 27.0 1.3E+02 0.0097 23.3 23.1 56 122-177 93-148 (279)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.0 95 0.007 22.6 7.0 43 105-151 3-45 (133)
6 d1ez3a_ a.47.2.1 (A:) Syntaxin 23.7 1.2E+02 0.009 21.8 12.2 32 198-229 89-120 (124)
7 d2efka1 a.238.1.4 (A:10-288) C 17.7 2.1E+02 0.015 22.1 22.6 40 119-158 104-143 (279)
8 d2efla1 a.238.1.4 (A:1-288) Fo 17.3 2.1E+02 0.016 22.0 22.5 39 119-157 113-151 (288)
9 d1vf7a_ f.46.1.1 (A:) Multidru 15.6 1.7E+02 0.013 22.1 6.7 24 106-129 49-72 (237)
10 d2ncda_ c.37.1.9 (A:) Kinesin 14.8 1.2E+02 0.0089 26.0 6.0 41 104-144 4-44 (368)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.06 E-value=52 Score=26.01 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039546 120 KKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEK 172 (313)
Q Consensus 120 ~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k 172 (313)
..++..+...+..+....++.....+.+......|+.+...=.++..+.+-.+
T Consensus 100 ~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~ 152 (288)
T d2efla1 100 VDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQ 152 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666677777777777777777777776555555544444443
No 2
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=48.84 E-value=19 Score=32.26 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039546 281 LVLKLEEEIDTLKEELE 297 (313)
Q Consensus 281 ~~~~le~e~~~L~~el~ 297 (313)
.+.+|..++..++.+++
T Consensus 314 ~i~~Lk~~Le~lr~~le 330 (387)
T d1qvra2 314 KLREAQHRLDEVRREIE 330 (387)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 3
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=43.76 E-value=50 Score=26.47 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=48.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546 233 NQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298 (313)
Q Consensus 233 ~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~k 298 (313)
+.++..+.+++.+.....--+.+.+.=|.||||+---+.- ..-.......|..|+..|+.||-.
T Consensus 6 ~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan--~t~~~~dr~ai~~E~~~l~~ei~~ 69 (395)
T d1io1a_ 6 TQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSAN--STNSQSDLDSIQAEITQRLNEIDR 69 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999988888778899999999999997655542 111224566788888888888865
No 4
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.99 E-value=1.3e+02 Score=23.32 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039546 122 AKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE 177 (313)
Q Consensus 122 ~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E 177 (313)
++.-+...+..+.+..++.....+.+.++...|+++...=..+..+.+-.......
T Consensus 93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~ 148 (279)
T d2efka1 93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAER 148 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666666666666655444554444444433333
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.02 E-value=95 Score=22.62 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151 (313)
Q Consensus 105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~ 151 (313)
..+|..|+..++++|..+..++..... .+.|+..++..++.|.
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~----~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRA----TISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 467888888888888888888877654 4667888888887775
No 6
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.71 E-value=1.2e+02 Score=21.78 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039546 198 EAVRNQHALDVASLLSTTQELQRIKQELAMTT 229 (313)
Q Consensus 198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~ 229 (313)
-.-+.||..-.-.|.-++.+-+.++.+|-..+
T Consensus 89 Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~ 120 (124)
T d1ez3a_ 89 RIRKTQHSTLSRKFVEVMSEYNATQSDYRERC 120 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466888888888999999999999986544
No 7
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.72 E-value=2.1e+02 Score=22.07 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 119 LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEAL 158 (313)
Q Consensus 119 L~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~ 158 (313)
.+++...+...+..-.....+++++|+........++.+.
T Consensus 104 ~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~ 143 (279)
T d2efka1 104 RKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAA 143 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555666666666555555555544
No 8
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29 E-value=2.1e+02 Score=22.04 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 119 LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157 (313)
Q Consensus 119 L~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a 157 (313)
.+++..........-.....+++++++........++.+
T Consensus 113 ~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~ 151 (288)
T d2efla1 113 RKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRA 151 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444
No 9
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.62 E-value=1.7e+02 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 039546 106 SELQAQLNLVQEDLKKAKEKIELI 129 (313)
Q Consensus 106 ~elE~QL~~~QeEL~k~KeQl~~A 129 (313)
.+++.+|..++-++..++.+++..
T Consensus 49 ~~~~~~l~~a~a~~~~a~~~~~r~ 72 (237)
T d1vf7a_ 49 ATYEADYQSAQANLASTQEQAQRY 72 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhh
Confidence 677777777777777666665543
No 10
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.76 E-value=1.2e+02 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=35.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQ 144 (313)
Q Consensus 104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AK 144 (313)
.+.+|+..++++.-|+..+++|+...+..+.+..++|..-|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (368)
T d2ncda_ 4 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44 (368)
T ss_dssp SSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 45788899999999999999999999888888888877654
Done!