Query 039547
Match_columns 67
No_of_seqs 113 out of 1068
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:36:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 2.5E-18 8.7E-23 95.0 4.3 52 1-55 16-67 (72)
2 2dim_A Cell division cycle 5-l 99.7 5E-17 1.7E-21 89.2 4.2 52 1-54 16-68 (70)
3 2din_A Cell division cycle 5-l 99.6 1.1E-16 3.8E-21 87.0 4.3 46 1-48 16-61 (66)
4 1guu_A C-MYB, MYB proto-oncoge 99.6 1E-16 3.6E-21 83.4 4.0 41 1-42 10-51 (52)
5 2d9a_A B-MYB, MYB-related prot 99.6 6.6E-17 2.3E-21 86.4 3.1 43 1-44 15-58 (60)
6 1gvd_A MYB proto-oncogene prot 99.6 2.1E-16 7.1E-21 82.3 3.7 41 1-42 10-51 (52)
7 1gv2_A C-MYB, MYB proto-oncoge 99.6 2.2E-16 7.5E-21 91.9 4.0 42 1-43 63-104 (105)
8 3zqc_A MYB3; transcription-DNA 99.6 4.3E-16 1.5E-20 94.0 4.6 47 1-48 61-107 (131)
9 2llk_A Cyclin-D-binding MYB-li 99.6 2E-16 6.8E-21 88.2 2.8 36 1-38 30-65 (73)
10 1ity_A TRF1; helix-turn-helix, 99.6 6E-16 2E-20 84.8 4.6 47 1-48 17-66 (69)
11 2k9n_A MYB24; R2R3 domain, DNA 99.6 6E-16 2E-20 90.7 4.1 44 1-45 60-103 (107)
12 1h8a_C AMV V-MYB, MYB transfor 99.6 6.3E-16 2.2E-20 92.8 3.8 42 1-43 86-127 (128)
13 2ltp_A Nuclear receptor corepr 99.4 9.5E-17 3.3E-21 92.1 0.0 44 1-45 23-66 (89)
14 1w0t_A Telomeric repeat bindin 99.6 1.3E-15 4.3E-20 79.7 4.1 41 1-42 9-52 (53)
15 3osg_A MYB21; transcription-DN 99.6 2.5E-15 8.5E-20 90.3 4.9 59 1-66 18-76 (126)
16 1h89_C C-MYB, MYB proto-oncoge 99.6 1.3E-15 4.5E-20 94.2 3.6 43 1-44 117-159 (159)
17 1x41_A Transcriptional adaptor 99.6 1.8E-15 6.1E-20 81.0 3.5 41 1-42 15-56 (60)
18 1gv2_A C-MYB, MYB proto-oncoge 99.6 2.6E-15 9E-20 87.3 4.3 59 1-66 11-70 (105)
19 1h8a_C AMV V-MYB, MYB transfor 99.6 3.5E-15 1.2E-19 89.6 4.6 60 1-67 34-94 (128)
20 2k9n_A MYB24; R2R3 domain, DNA 99.5 5E-15 1.7E-19 86.7 4.7 59 1-66 8-67 (107)
21 1h89_C C-MYB, MYB proto-oncoge 99.5 5.2E-15 1.8E-19 91.5 4.7 60 1-67 65-125 (159)
22 3osg_A MYB21; transcription-DN 99.5 6.3E-15 2.2E-19 88.5 4.4 42 1-43 69-110 (126)
23 2yum_A ZZZ3 protein, zinc fing 99.5 8.3E-15 2.8E-19 81.1 4.2 47 1-48 15-67 (75)
24 2ckx_A NGTRF1, telomere bindin 99.5 1.8E-14 6.2E-19 81.9 5.6 42 1-43 7-53 (83)
25 1ign_A Protein (RAP1); RAP1,ye 99.5 9.8E-15 3.4E-19 96.3 3.5 44 1-45 15-64 (246)
26 3sjm_A Telomeric repeat-bindin 99.5 2E-14 6.9E-19 78.0 4.1 42 1-43 18-62 (64)
27 2elk_A SPCC24B10.08C protein; 99.5 1.6E-14 5.5E-19 76.9 3.7 38 1-39 16-55 (58)
28 2juh_A Telomere binding protei 99.5 7.6E-14 2.6E-18 84.1 6.1 66 1-67 24-94 (121)
29 3zqc_A MYB3; transcription-DNA 99.5 1.6E-14 5.5E-19 87.1 2.8 59 1-66 9-68 (131)
30 2cqr_A RSGI RUH-043, DNAJ homo 99.4 9E-14 3.1E-18 77.4 3.4 38 1-39 25-66 (73)
31 2roh_A RTBP1, telomere binding 99.4 5.7E-13 1.9E-17 80.4 5.4 65 1-67 38-108 (122)
32 2yus_A SWI/SNF-related matrix- 99.3 5.7E-13 2E-17 74.9 3.0 38 1-39 25-62 (79)
33 2aje_A Telomere repeat-binding 99.3 2.6E-12 8.8E-17 75.8 5.5 41 1-42 20-65 (105)
34 2cjj_A Radialis; plant develop 99.3 2.9E-12 9.9E-17 74.1 4.3 41 1-42 15-59 (93)
35 1x58_A Hypothetical protein 49 99.3 3.7E-12 1.3E-16 68.9 3.9 40 1-41 15-57 (62)
36 2eqr_A N-COR1, N-COR, nuclear 99.1 1.2E-10 4.1E-15 62.3 3.9 37 1-38 19-55 (61)
37 2iw5_B Protein corest, REST co 98.8 1.9E-09 6.7E-14 70.7 3.4 41 1-42 140-180 (235)
38 3hm5_A DNA methyltransferase 1 98.8 1.2E-08 4.2E-13 58.9 5.3 47 1-48 37-88 (93)
39 2cqq_A RSGI RUH-037, DNAJ homo 98.8 7.3E-09 2.5E-13 57.2 3.8 40 1-42 15-58 (72)
40 1ug2_A 2610100B20RIK gene prod 98.2 1.8E-06 6.1E-11 49.7 3.8 39 1-40 40-81 (95)
41 1fex_A TRF2-interacting telome 98.2 1.9E-06 6.5E-11 45.7 3.6 39 1-40 9-57 (59)
42 2lr8_A CAsp8-associated protei 97.4 2.9E-07 9.8E-12 50.4 0.0 38 1-40 21-61 (70)
43 1wgx_A KIAA1903 protein; MYB D 98.1 2.1E-06 7.2E-11 47.5 3.4 38 1-39 15-56 (73)
44 4eef_G F-HB80.4, designed hema 97.4 1.7E-05 5.8E-10 43.9 -0.3 35 1-35 27-65 (74)
45 4iej_A DNA methyltransferase 1 97.4 0.00043 1.5E-08 39.7 5.2 47 1-48 37-88 (93)
46 4a69_C Nuclear receptor corepr 97.3 0.00032 1.1E-08 40.0 4.2 35 1-35 50-84 (94)
47 1ign_A Protein (RAP1); RAP1,ye 97.2 0.00029 9.8E-09 46.6 3.8 26 15-41 173-198 (246)
48 2xag_B REST corepressor 1; ami 97.2 0.00023 7.8E-09 50.8 3.3 36 2-38 388-423 (482)
49 2yqk_A Arginine-glutamic acid 97.2 0.00067 2.3E-08 36.0 4.1 35 3-38 18-53 (63)
50 2crg_A Metastasis associated p 96.9 0.0018 6.2E-08 35.0 4.2 35 3-38 17-52 (70)
51 2ebi_A DNA binding protein GT- 95.5 0.0086 3E-07 33.0 2.4 42 3-46 13-68 (86)
52 2xag_B REST corepressor 1; ami 85.9 0.15 5.1E-06 36.5 0.0 34 2-35 197-230 (482)
53 1ofc_X ISWI protein; nuclear p 81.2 2.1 7.2E-05 28.8 4.1 33 3-35 119-152 (304)
54 2o8x_A Probable RNA polymerase 79.9 4 0.00014 20.1 4.3 32 3-35 21-52 (70)
55 2li6_A SWI/SNF chromatin-remod 79.1 3.1 0.00011 23.8 3.9 37 5-42 54-98 (116)
56 2of5_H Leucine-rich repeat and 78.4 3.7 0.00013 23.5 4.1 31 2-33 13-43 (118)
57 2yqf_A Ankyrin-1; death domain 77.3 4.1 0.00014 23.0 4.0 31 3-34 19-49 (111)
58 1ku3_A Sigma factor SIGA; heli 75.2 6.4 0.00022 19.9 4.3 32 3-35 16-51 (73)
59 2of5_A Death domain-containing 74.0 5.7 0.00019 22.8 4.1 32 2-34 24-55 (114)
60 2o71_A Death domain-containing 73.8 6.2 0.00021 22.7 4.2 31 2-33 24-54 (115)
61 2lm1_A Lysine-specific demethy 73.4 8.9 0.0003 21.3 4.8 28 14-42 66-97 (107)
62 1ofc_X ISWI protein; nuclear p 73.2 2.6 8.7E-05 28.4 2.7 40 1-41 219-274 (304)
63 2p7v_B Sigma-70, RNA polymeras 72.0 6.7 0.00023 19.6 3.7 32 3-35 11-46 (68)
64 4b4c_A Chromodomain-helicase-D 71.4 5.2 0.00018 24.6 3.7 33 3-35 16-53 (211)
65 1wxp_A THO complex subunit 1; 70.7 6.6 0.00023 22.1 3.8 30 3-33 19-48 (110)
66 1kkx_A Transcription regulator 70.3 4 0.00014 23.8 2.9 27 15-42 71-97 (123)
67 3hug_A RNA polymerase sigma fa 69.9 9.7 0.00033 20.1 4.3 32 3-35 43-74 (92)
68 2jrz_A Histone demethylase jar 69.8 10 0.00034 21.7 4.5 37 5-42 45-93 (117)
69 2cxy_A BAF250B subunit, HBAF25 66.0 14 0.00048 21.2 4.6 28 14-42 73-104 (125)
70 2eqy_A RBP2 like, jumonji, at 65.3 15 0.0005 21.1 4.6 28 14-42 64-95 (122)
71 1fad_A Protein (FADD protein); 64.4 5.7 0.00019 21.7 2.6 29 4-33 16-44 (99)
72 1ig6_A MRF-2, modulator recogn 62.1 13 0.00043 20.8 3.8 28 14-42 55-87 (107)
73 2jxj_A Histone demethylase jar 61.8 8.5 0.00029 21.0 3.0 27 14-41 58-88 (96)
74 3c57_A Two component transcrip 59.9 18 0.00062 19.3 4.2 31 3-35 33-63 (95)
75 1or7_A Sigma-24, RNA polymeras 59.1 23 0.0008 20.4 4.8 32 3-35 146-177 (194)
76 2kk0_A AT-rich interactive dom 58.5 19 0.00065 21.3 4.3 37 5-42 69-118 (145)
77 2y9y_A Imitation switch protei 57.7 8.7 0.0003 26.6 3.0 40 1-41 235-290 (374)
78 1je8_A Nitrate/nitrite respons 57.7 18 0.00063 18.7 4.1 31 3-35 27-57 (82)
79 1c20_A DEAD ringer protein; DN 57.4 24 0.00083 20.2 4.6 37 5-42 57-106 (128)
80 1x3u_A Transcriptional regulat 57.3 17 0.00058 18.2 4.7 31 3-35 22-52 (79)
81 3ulq_B Transcriptional regulat 56.7 21 0.00072 19.1 4.3 31 3-35 35-65 (90)
82 2rq5_A Protein jumonji; develo 56.5 22 0.00076 20.5 4.3 37 5-42 47-96 (121)
83 3i4p_A Transcriptional regulat 50.9 23 0.00079 20.6 3.9 39 2-42 5-44 (162)
84 1tty_A Sigma-A, RNA polymerase 50.8 25 0.00087 18.3 4.3 31 4-35 25-59 (87)
85 1rp3_A RNA polymerase sigma fa 50.0 38 0.0013 20.0 4.8 32 3-35 193-224 (239)
86 3mzy_A RNA polymerase sigma-H 49.2 31 0.0011 19.1 4.1 30 4-35 116-145 (164)
87 2rnj_A Response regulator prot 48.7 22 0.00074 18.7 3.2 31 3-35 35-65 (91)
88 3ezq_B Protein FADD; apoptosis 47.6 23 0.00079 20.4 3.4 27 7-34 11-37 (122)
89 1fse_A GERE; helix-turn-helix 47.6 25 0.00084 17.2 4.1 31 3-35 17-47 (74)
90 2xb0_X Chromo domain-containin 45.7 11 0.00036 24.9 1.9 21 1-21 175-196 (270)
91 1xsv_A Hypothetical UPF0122 pr 45.6 38 0.0013 18.8 4.9 32 3-35 31-62 (113)
92 2lfw_A PHYR sigma-like domain; 44.8 30 0.001 19.8 3.7 32 3-35 99-130 (157)
93 1irz_A ARR10-B; helix-turn-hel 44.7 33 0.0011 17.8 4.0 32 4-35 17-53 (64)
94 2gf5_A FADD protein; death dom 43.2 36 0.0012 20.7 4.0 30 4-34 100-129 (191)
95 2q1z_A RPOE, ECF SIGE; ECF sig 42.5 13 0.00043 21.5 1.7 32 3-35 141-172 (184)
96 2jvw_A Uncharacterized protein 41.1 28 0.00097 19.3 2.9 30 2-33 18-50 (88)
97 3e7l_A Transcriptional regulat 38.7 37 0.0013 16.7 3.0 23 1-23 20-42 (63)
98 2ib1_A Death domain containing 36.3 19 0.00064 19.7 1.7 24 10-34 15-38 (91)
99 3eyi_A Z-DNA-binding protein 1 34.7 55 0.0019 17.5 3.8 42 2-44 12-54 (72)
100 1ngr_A P75 low affinity neurot 33.6 32 0.0011 18.4 2.3 20 13-33 21-40 (85)
101 4d8o_A Ankyrin-2; ZU5, UPA, de 33.1 43 0.0015 24.5 3.5 32 2-34 498-529 (581)
102 1s7o_A Hypothetical UPF0122 pr 32.6 66 0.0023 17.8 4.4 32 3-35 28-59 (113)
103 2jpc_A SSRB; DNA binding prote 32.2 44 0.0015 15.7 4.1 31 3-35 4-34 (61)
104 2dbb_A Putative HTH-type trans 30.3 77 0.0026 17.8 4.8 37 2-40 11-48 (151)
105 1ich_A TNF-1, tumor necrosis f 30.2 55 0.0019 18.8 3.1 29 4-33 15-44 (112)
106 2e1c_A Putative HTH-type trans 29.5 90 0.0031 18.3 4.8 36 2-39 29-65 (171)
107 1p4w_A RCSB; solution structur 28.3 76 0.0026 17.2 4.1 30 4-35 41-70 (99)
108 1ntc_A Protein (nitrogen regul 26.7 74 0.0025 16.8 3.1 32 1-33 52-83 (91)
109 1dw9_A Cyanate lyase; cyanate 25.0 94 0.0032 18.8 3.6 32 3-35 16-47 (156)
110 1umq_A Photosynthetic apparatu 24.7 83 0.0028 16.7 3.0 30 1-31 42-71 (81)
111 3clo_A Transcriptional regulat 24.2 1.3E+02 0.0043 18.6 4.2 31 3-35 203-233 (258)
112 1j1v_A Chromosomal replication 22.8 87 0.003 16.9 2.9 26 10-35 43-68 (94)
113 1l0o_C Sigma factor; bergerat 22.7 18 0.00061 21.5 0.0 31 4-35 205-235 (243)
114 4dth_A VGRG protein; alpha-bet 21.9 30 0.001 23.6 1.0 31 7-38 240-277 (396)
115 2cyy_A Putative HTH-type trans 21.5 1.2E+02 0.0041 17.0 4.2 39 2-42 9-48 (151)
116 1i1g_A Transcriptional regulat 21.4 1.1E+02 0.0039 16.7 4.2 39 2-42 6-45 (141)
117 2v79_A DNA replication protein 20.3 1.3E+02 0.0046 17.2 4.3 33 12-46 50-82 (135)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=2.5e-18 Score=95.04 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=46.4
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCC
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKK 55 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~ 55 (67)
||++|++++.+||++|..||.+|||||+++|+||| +.++++.+.. + +++...
T Consensus 16 Ed~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~-~~~l~~~~~~-g-~~~~~~ 67 (72)
T 2cu7_A 16 EKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA-RQYFKNKVKC-G-LDKETP 67 (72)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHSCS-C-TTCCCS
T ss_pred HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHhc-C-CCCCcc
Confidence 79999999999999999999999999999999999 9999988776 5 555443
No 2
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=89.23 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCC
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMK 54 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~ 54 (67)
||++|++++..|| ++|..||.+|||||+++|++|| ..+|.+.+.... +++.+
T Consensus 16 ED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~L~p~i~~~~-wt~eE 68 (70)
T 2dim_A 16 EDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW-YEWLDPSIKKTE-WSGPS 68 (70)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHH-HHTSCSSSCCCC-SCCSC
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHH-HHHcCCcccCCC-CChHh
Confidence 7999999999999 7999999999999999999999 999999888777 55543
No 3
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=86.96 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG 48 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~ 48 (67)
||++|++++..+|++|+.||. |||||+++|++|| +.++++.+....
T Consensus 16 ED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw-~~~l~~~~~~~~ 61 (66)
T 2din_A 16 EEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHY-EFLLDKAAQRDS 61 (66)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHH-HHHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHH-HHHhChHhcCCC
Confidence 799999999999999999999 9999999999999 999999887765
No 4
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=1e-16 Score=83.38 Aligned_cols=41 Identities=32% Similarity=0.525 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
||++|++++.++|+ +|+.||..|||||+++|++|| +.+|.+
T Consensus 10 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P 51 (52)
T 1guu_A 10 EDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW-QKVLNP 51 (52)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH-HHHHSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence 79999999999998 999999999999999999999 887765
No 5
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=6.6e-17 Score=86.37 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=40.2
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhh
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKH 44 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~ 44 (67)
||++|++++.+|| ++|+.||.+|||||+++|++|| +.+|++.+
T Consensus 15 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~i 58 (60)
T 2d9a_A 15 EDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW-LRVLSGPS 58 (60)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHH-HHTSCSSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHH-HHHcCCcc
Confidence 7999999999999 6999999999999999999999 88888764
No 6
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=2.1e-16 Score=82.30 Aligned_cols=41 Identities=34% Similarity=0.601 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
||++|++++.++|+ +|+.||..|||||+++|++|| ..+|.+
T Consensus 10 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P 51 (52)
T 1gvd_A 10 EDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNP 51 (52)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTSC
T ss_pred HHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence 79999999999997 699999999999999999999 887765
No 7
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.62 E-value=2.2e-16 Score=91.94 Aligned_cols=42 Identities=45% Similarity=0.758 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~ 43 (67)
||.+|++++.++|++|+.||++|||||+++|+||| +..++++
T Consensus 63 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~~~~~ 104 (105)
T 1gv2_A 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104 (105)
T ss_dssp HHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHH-HHHTC--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHHHhcc
Confidence 79999999999999999999999999999999999 8888775
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.61 E-value=4.3e-16 Score=94.05 Aligned_cols=47 Identities=38% Similarity=0.649 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG 48 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~ 48 (67)
||++|+++|.++|++|+.||++|||||+++|+||| ++++++++...+
T Consensus 61 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~l~~~~~~~~ 107 (131)
T 3zqc_A 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW-NSSISKRISTNS 107 (131)
T ss_dssp HHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHH-HHTTGGGCCCCT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHhhcCC
Confidence 79999999999999999999999999999999999 999999887665
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=88.20 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=34.6
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT 38 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~ 38 (67)
||++|+++|.++|++|+.||+.| |||+++||||| +.
T Consensus 30 ED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw-~~ 65 (73)
T 2llk_A 30 EIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RL 65 (73)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHH-HH
Confidence 79999999999999999999999 99999999999 64
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=6e-16 Score=84.76 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCC--CCChhhHHHHHHHhhhhhhhhhCC
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLP--GRTDNETNNYYKNTKLKRKHEEGG 48 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lp--gRt~~~vknrw~~~~l~~~~~~~~ 48 (67)
||++|++++.+|| ++|+.||..|| |||+++|++|| ..++++.+.+..
T Consensus 17 ED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~l~p~i~k~~ 66 (69)
T 1ity_A 17 EDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKLKLISSD 66 (69)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHH-HHHcCCCCCCCC
Confidence 7999999999999 69999999999 99999999999 999998876554
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.60 E-value=6e-16 Score=90.68 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=40.5
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHE 45 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~ 45 (67)
||.+|+++|.+||++|+.||++|||||+++|+||| +..+++...
T Consensus 60 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~r~~~~ 103 (107)
T 2k9n_A 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW-MMIARHRAK 103 (107)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHH-HHHHhhHHH
Confidence 79999999999999999999999999999999999 887776543
No 12
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.59 E-value=6.3e-16 Score=92.84 Aligned_cols=42 Identities=45% Similarity=0.763 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~ 43 (67)
||.+|++++.++|++|+.||++|||||+++|+||| +..++++
T Consensus 86 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~-~~~~~~~ 127 (128)
T 1h8a_C 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRK 127 (128)
T ss_dssp HHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHH-HTTTTC-
T ss_pred HHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHH-HHHHhcc
Confidence 79999999999999999999999999999999999 8888775
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.37 E-value=9.5e-17 Score=92.05 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHE 45 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~ 45 (67)
||++|+++|.+||++|+.||.+|||||+++|+||| +.++++.-.
T Consensus 23 Ed~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~-~~~lrk~~l 66 (89)
T 2ltp_A 23 EMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY-FNYKKRQNL 66 (89)
Confidence 89999999999999999999999999999999999 988876533
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.3e-15 Score=79.70 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=37.9
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCC--CCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLP--GRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lp--gRt~~~vknrw~~~~l~~ 42 (67)
||++|++++..+| ++|+.||..|| |||+++|++|| ..+++.
T Consensus 9 Ed~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~~k~ 52 (53)
T 1w0t_A 9 EDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKL 52 (53)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH-HHHHcc
Confidence 7999999999999 69999999999 99999999999 776654
No 15
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.57 E-value=2.5e-15 Score=90.25 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=52.4
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN 66 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (67)
||++|++++..||.+|..||..|||||+.+|+.|| ..++.+.+.. .+++.++|..++.+
T Consensus 18 ED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~------~~WT~eEd~~L~~~ 76 (126)
T 3osg_A 18 EDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW-KNYLAPSISH------TPWTAEEDALLVQK 76 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHH-HHHTSTTSCC------SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-hhhccccccc------ccCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999 8888776544 45899999888765
No 16
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.57 E-value=1.3e-15 Score=94.16 Aligned_cols=43 Identities=44% Similarity=0.725 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKH 44 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~ 44 (67)
||.+|++++.++|++|+.||++|||||+++|+||| +..+++++
T Consensus 117 Ed~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~-~~~~r~~~ 159 (159)
T 1h89_C 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 159 (159)
T ss_dssp HHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HTTTCC--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH-HHHHhccC
Confidence 79999999999999999999999999999999999 88887753
No 17
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.8e-15 Score=81.01 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
||++|++++..|| ++|..||++|||||+++|++|| ..++.+
T Consensus 15 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~-~~~l~~ 56 (60)
T 1x41_A 15 EEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY-MKYFSG 56 (60)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHH-HHHccC
Confidence 7999999999999 7999999999999999999999 766643
No 18
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.56 E-value=2.6e-15 Score=87.33 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=51.4
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547 1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN 66 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (67)
||++|++++..||. +|..||..|||||+.+|+.|| ..++.+.+ ...+++.++|..++.+
T Consensus 11 ED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~------~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 11 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEV------KKTSWTEEEDRIIYQA 70 (105)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTCCCC------CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHH-HhccCCcc------cccCCCHHHHHHHHHH
Confidence 79999999999997 699999999999999999999 88777664 4455888988888765
No 19
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.55 E-value=3.5e-15 Score=89.55 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547 1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH 67 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (67)
||++|++++..||. +|..||..|||||+++|++|| ..++.+.+. ..+++.++|..++.+|
T Consensus 34 ED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~------~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 34 EDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERW-HNHLNPEVK------KTSWTEEEDRIIYQAH 94 (128)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHH-HHTTCSSSC------CSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHH-HHhcccccc------cccCCHHHHHHHHHHH
Confidence 79999999999996 699999999999999999999 888877644 4458888888887653
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.55 E-value=5e-15 Score=86.72 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547 1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN 66 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (67)
||++|++++..||. .|..||..|||||+.+|+.|| ..+|.+.+. ..+++.++|..++.+
T Consensus 8 ED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~p~i~------~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 8 EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERW-NNYINPALR------TDPWSPEEDMLLDQK 67 (107)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHH-HHHSSSCCT------TCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHH-HHHHccccc------ccccCHHHHHHHHHH
Confidence 79999999999996 899999999999999999999 888887644 445888988888765
No 21
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.54 E-value=5.2e-15 Score=91.46 Aligned_cols=60 Identities=30% Similarity=0.456 Sum_probs=51.9
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547 1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH 67 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (67)
||++|++++..+|+ +|+.||.+|||||+++|++|| ..++.+.+. ..+++.++|..++.+|
T Consensus 65 Ed~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~------~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEVK------KTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHH-HHTTCTTSC------CSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHH-HHHhCcccc------ccCCChHHHHHHHHHH
Confidence 78999999999996 699999999999999999999 888877644 4458888888887653
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.53 E-value=6.3e-15 Score=88.48 Aligned_cols=42 Identities=31% Similarity=0.512 Sum_probs=39.0
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~ 43 (67)
||++|++++.++|++|+.||++|||||+++|+||| +..+++.
T Consensus 69 Ed~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~~k~ 110 (126)
T 3osg_A 69 EDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL 110 (126)
T ss_dssp HHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHhc
Confidence 79999999999999999999999999999999999 7766653
No 23
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.3e-15 Score=81.14 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhcC------CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547 1 EDRLICRLFAISE------SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG 48 (67)
Q Consensus 1 Ed~ll~~~~~~~G------~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~ 48 (67)
||++|++++..|| ++|..||.+|||||+++|++|| +.++.+.++...
T Consensus 15 Ed~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~-~~~l~~~~k~g~ 67 (75)
T 2yum_A 15 EQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV-QKYFIKLTKAGI 67 (75)
T ss_dssp HHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHH-HHHHGGGSTTCS
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 7999999999999 7999999999999999999999 999988765543
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.52 E-value=1.8e-14 Score=81.89 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhh
Q 039547 1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRK 43 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~ 43 (67)
||+.|++++.+||+ +|+.|++. |+|||+++||+|| .++++..
T Consensus 7 Ed~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrW-rnllk~~ 53 (83)
T 2ckx_A 7 EVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTA 53 (83)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHH-HHHHHhc
Confidence 79999999999998 99999996 8999999999999 8877643
No 25
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.50 E-value=9.8e-15 Score=96.34 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhcCCc------HHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547 1 EDRLICRLFAISESR------WSVIAAHLPGRTDNETNNYYKNTKLKRKHE 45 (67)
Q Consensus 1 Ed~ll~~~~~~~G~k------W~~Ia~~lpgRt~~~vknrw~~~~l~~~~~ 45 (67)
||++|+++|.++|++ |+.||++|||||+|+||||| +++|++++.
T Consensus 15 ED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw-~~~L~~~ln 64 (246)
T 1ign_A 15 EDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF-RVYLSKRLE 64 (246)
T ss_dssp HHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHH-HHTTGGGCC
T ss_pred HHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHH-HHHHhhhcc
Confidence 799999999999986 99999999999999999999 999999864
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2e-14 Score=78.05 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCC--CCChhhHHHHHHHhhhhhh
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLP--GRTDNETNNYYKNTKLKRK 43 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lp--gRt~~~vknrw~~~~l~~~ 43 (67)
||++|++++.+|| .+|+.||+.+| |||+.+|++|| .+++++.
T Consensus 18 ED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~nl~k~g 62 (64)
T 3sjm_A 18 ESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW-RTMKRLG 62 (64)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHH-HHHhccC
Confidence 7999999999999 48999999976 99999999999 7777664
No 27
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=1.6e-14 Score=76.90 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCC-CCChhhHHHHHHHhh
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLP-GRTDNETNNYYKNTK 39 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lp-gRt~~~vknrw~~~~ 39 (67)
||.+|++++.++| ++|..||++|| |||+++|++|| ..+
T Consensus 16 ED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~-~~~ 55 (58)
T 2elk_A 16 EELLLIDACETLGLGNWADIADYVGNARTKEECRDHY-LKT 55 (58)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHH-HHH
Confidence 7999999999999 89999999999 99999999999 543
No 28
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.48 E-value=7.6e-14 Score=84.10 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=49.7
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547 1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH 67 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (67)
||+.|++++.+||+ +|+.|++. |+|||+++||+|| .++++............+.+.+.+..++.+|
T Consensus 24 Ed~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRW-rnllk~~~~~p~~krg~~~p~e~~~rv~~~h 94 (121)
T 2juh_A 24 EVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTASIAPQQRRGEPVPQDLLDRVLAAH 94 (121)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHH-HHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHH-HHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence 79999999999998 99999998 4999999999999 8888743333331222255566666666654
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.47 E-value=1.6e-14 Score=87.11 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547 1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN 66 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (67)
||++|++++..+| +.|..||..|||||+.+|+.|| ..+|.+.+.. .+++.++|..++.+
T Consensus 9 ED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~------~~Wt~eEd~~L~~~ 68 (131)
T 3zqc_A 9 EDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERW-FNHLDPAVVK------HAWTPEEDETIFRN 68 (131)
T ss_dssp HHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHH-HHHTSTTCCC------SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHH-hhccCccccC------CCCCHHHHHHHHHH
Confidence 7999999999999 6799999999999999999999 8888876544 45889999888765
No 30
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=9e-14 Score=77.35 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=35.3
Q ss_pred ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhh
Q 039547 1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTK 39 (67)
Q Consensus 1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~ 39 (67)
||.+|++++..|| ++|..||.+|||||+++|++|| +.+
T Consensus 25 Ed~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry-~~L 66 (73)
T 2cqr_A 25 QQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY-KLL 66 (73)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHH
Confidence 7899999999999 7899999999999999999999 543
No 31
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.38 E-value=5.7e-13 Score=80.38 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.2
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHH-HHHHHhcC
Q 039547 1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLER-DLRIVKNH 67 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 67 (67)
||+.|++.+.+||. +|+.|++. |+|||+.+||+|| .++++....... +....+.+++ +..++.+|
T Consensus 38 Ed~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRW-rnllk~~~~~p~-~kr~~~~p~e~~~~v~~~h 108 (122)
T 2roh_A 38 EVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW-KTLVHTASIAPQ-QRRGAPVPQELLDRVLAAQ 108 (122)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHH-HHHHHHHHSCTT-TCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHhhccCCcc-ccCCCCCCHHHHHHHHHHH
Confidence 79999999999997 99999986 4999999999999 887754433333 3333444444 45555554
No 32
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.33 E-value=5.7e-13 Score=74.94 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=35.7
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTK 39 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~ 39 (67)
||.+|++++.+||++|..||.+|+|||+.+|++|| ..+
T Consensus 25 Ed~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~-~~~ 62 (79)
T 2yus_A 25 ETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF-LRL 62 (79)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHh
Confidence 79999999999999999999999999999999999 543
No 33
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=2.6e-12 Score=75.76 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhcCC-cHHHHHhhC----CCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISES-RWSVIAAHL----PGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G~-kW~~Ia~~l----pgRt~~~vknrw~~~~l~~ 42 (67)
||+.|++.+.+||+ +|+.|++.+ +|||+++||++| .+.++.
T Consensus 20 Ed~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW-rnllk~ 65 (105)
T 2aje_A 20 EVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW-KTLVHT 65 (105)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHhh
Confidence 79999999999997 999999965 899999999999 877754
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.29 E-value=2.9e-12 Score=74.10 Aligned_cols=41 Identities=27% Similarity=0.541 Sum_probs=36.8
Q ss_pred ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
||.+|.+++..|| ++|..||.+|||||+++|++|| +.++..
T Consensus 15 Ed~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry-~~l~~d 59 (93)
T 2cjj_A 15 ENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVED 59 (93)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence 7899999999996 7899999999999999999999 766544
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=3.7e-12 Score=68.89 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=36.2
Q ss_pred ChHHHHHHHHhcCCcHHHHH---hhCCCCChhhHHHHHHHhhhh
Q 039547 1 EDRLICRLFAISESRWSVIA---AHLPGRTDNETNNYYKNTKLK 41 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia---~~lpgRt~~~vknrw~~~~l~ 41 (67)
||+.|++.|.+||.+|+.|+ .+|+|||+-++|++| ...++
T Consensus 15 E~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~-r~L~k 57 (62)
T 1x58_A 15 EVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY-HRLIS 57 (62)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH-HHHHh
Confidence 78999999999999999999 688999999999999 65444
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=62.32 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=35.0
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT 38 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~ 38 (67)
|++++++.+..+|.+|..||.+|||||..+|.++| +.
T Consensus 19 E~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y-y~ 55 (61)
T 2eqr_A 19 EKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY-YL 55 (61)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HH
Confidence 68899999999999999999999999999999999 54
No 37
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.83 E-value=1.9e-09 Score=70.69 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
|+.++++.+..||+.|..||+.++|||.++|+++| +.+.++
T Consensus 140 E~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY-~~~kKR 180 (235)
T 2iw5_B 140 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VNYRRR 180 (235)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH-HHTTTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence 67889999999999999999999999999999999 776655
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.78 E-value=1.2e-08 Score=58.88 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=42.0
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhC-----CCCChhhHHHHHHHhhhhhhhhhCC
Q 039547 1 EDRLICRLFAISESRWSVIAAHL-----PGRTDNETNNYYKNTKLKRKHEEGG 48 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~l-----pgRt~~~vknrw~~~~l~~~~~~~~ 48 (67)
|++.|++|+.+||.+|..|+..+ ++||..++|+|| .+.+++.+...+
T Consensus 37 ETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~Ry-Y~v~~~l~~~r~ 88 (93)
T 3hm5_A 37 ETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVRA 88 (93)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHH-HHHHHHHHHhcC
Confidence 68899999999999999999999 589999999999 888877666654
No 39
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=7.3e-09 Score=57.20 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=34.9
Q ss_pred ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
||++|.+++..|+ ++|..||.+| |||..+|+++| +.+...
T Consensus 15 E~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y-~~L~~d 58 (72)
T 2cqq_A 15 DLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKA-KQLKDS 58 (72)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHH-HHHHHh
Confidence 6889999999997 6899999998 99999999999 655444
No 40
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.18 E-value=1.8e-06 Score=49.67 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=35.3
Q ss_pred ChHHHHHHHHhcCC---cHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547 1 EDRLICRLFAISES---RWSVIAAHLPGRTDNETNNYYKNTKL 40 (67)
Q Consensus 1 Ed~ll~~~~~~~G~---kW~~Ia~~lpgRt~~~vknrw~~~~l 40 (67)
||..||....+-|. .|+.||+.|.+|+.++|+||| ...|
T Consensus 40 ~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RF-q~Lm 81 (95)
T 1ug2_A 40 ADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF-RELM 81 (95)
T ss_dssp HHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH-HHHH
T ss_pred cCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHH-HHHH
Confidence 58899999999997 799999999999999999999 6544
No 41
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.17 E-value=1.9e-06 Score=45.70 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhc--------CCc-HHHHHh-hCCCCChhhHHHHHHHhhh
Q 039547 1 EDRLICRLFAIS--------ESR-WSVIAA-HLPGRTDNETNNYYKNTKL 40 (67)
Q Consensus 1 Ed~ll~~~~~~~--------G~k-W~~Ia~-~lpgRt~~~vknrw~~~~l 40 (67)
||.+|++.+.++ ||+ |..+|. .+|++|-.++++|| ...|
T Consensus 9 dD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy-~k~l 57 (59)
T 1fex_A 9 DDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRY-LKHL 57 (59)
T ss_dssp HHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHH-HHHc
Confidence 689999999999 764 999999 89999999999999 4433
No 42
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.43 E-value=2.9e-07 Score=50.43 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhcCC---cHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547 1 EDRLICRLFAISES---RWSVIAAHLPGRTDNETNNYYKNTKL 40 (67)
Q Consensus 1 Ed~ll~~~~~~~G~---kW~~Ia~~lpgRt~~~vknrw~~~~l 40 (67)
||..|+..+.+-|. .|+.||..| |||+++|+||| ...+
T Consensus 21 eDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF-~~Lm 61 (70)
T 2lr8_A 21 DDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERF-QQLM 61 (70)
Confidence 68899999999998 799999999 99999999999 5443
No 43
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.13 E-value=2.1e-06 Score=47.47 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=32.1
Q ss_pred ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhh
Q 039547 1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTK 39 (67)
Q Consensus 1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~ 39 (67)
|+.+|......|+ .+|..||..+||||..+|+.+| ...
T Consensus 15 E~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY-~~l 56 (73)
T 1wgx_A 15 ELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY-MEN 56 (73)
T ss_dssp HHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH-HHS
T ss_pred HHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHH-HHH
Confidence 5667777778887 3799999999999999999999 544
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.43 E-value=1.7e-05 Score=43.90 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=28.4
Q ss_pred ChHHHHHHHHhcCC----cHHHHHhhCCCCChhhHHHHH
Q 039547 1 EDRLICRLFAISES----RWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 1 Ed~ll~~~~~~~G~----kW~~Ia~~lpgRt~~~vknrw 35 (67)
|++++-.....|+. +|..||..+||||..+|+.+|
T Consensus 27 E~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 27 ENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp HHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 34555556666663 799999999999999999998
No 45
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.39 E-value=0.00043 Score=39.74 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCC-----CCChhhHHHHHHHhhhhhhhhhCC
Q 039547 1 EDRLICRLFAISESRWSVIAAHLP-----GRTDNETNNYYKNTKLKRKHEEGG 48 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lp-----gRt~~~vknrw~~~~l~~~~~~~~ 48 (67)
|-+.|++|...|+-+|..|+..+. +||...+|.|| .+..++.+....
T Consensus 37 ETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RY-Y~V~~~l~~~r~ 88 (93)
T 4iej_A 37 ETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVRA 88 (93)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHH-HHHHHHHHHhhC
Confidence 456899999999999999999884 79999999999 988877666554
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.32 E-value=0.00032 Score=40.03 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=31.6
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
|-.+..+.+..+|..|..||..||+||..+|-..|
T Consensus 50 E~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 50 EKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 34567788999999999999999999999999988
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.23 E-value=0.00029 Score=46.56 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.0
Q ss_pred cHHHHHhhCCCCChhhHHHHHHHhhhh
Q 039547 15 RWSVIAAHLPGRTDNETNNYYKNTKLK 41 (67)
Q Consensus 15 kW~~Ia~~lpgRt~~~vknrw~~~~l~ 41 (67)
.|..||+.+|+||++++|+|| ...++
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRy-rKfl~ 198 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRF-RKFLL 198 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHH-HHTHH
T ss_pred HHHHHHHHCCCCChhhHHHHH-HHHHh
Confidence 799999999999999999999 54443
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.20 E-value=0.00023 Score=50.82 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=32.5
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT 38 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~ 38 (67)
-.+.++.+.+||..|..||..++.||..+|+++| ..
T Consensus 388 ~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy-~~ 423 (482)
T 2xag_B 388 QLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VN 423 (482)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHH-HH
Confidence 4567888999999999999999999999999998 54
No 49
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00067 Score=35.95 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCcHHHHHh-hCCCCChhhHHHHHHHh
Q 039547 3 RLICRLFAISESRWSVIAA-HLPGRTDNETNNYYKNT 38 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~-~lpgRt~~~vknrw~~~ 38 (67)
.+-.+.+..+|..|..|++ .+|+||..+|...| ..
T Consensus 18 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY-Y~ 53 (63)
T 2yqk_A 18 KRFVKGLRQYGKNFFRIRKELLPNKETGELITFY-YY 53 (63)
T ss_dssp HHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH-HH
T ss_pred HHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH-hc
Confidence 4566788999999999999 59999999999988 53
No 50
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.87 E-value=0.0018 Score=34.98 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcHHHHHh-hCCCCChhhHHHHHHHh
Q 039547 3 RLICRLFAISESRWSVIAA-HLPGRTDNETNNYYKNT 38 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~-~lpgRt~~~vknrw~~~ 38 (67)
.+-.+.+..+|..|..|++ .+|+||..+|...| ..
T Consensus 17 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY-Y~ 52 (70)
T 2crg_A 17 CLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY-YM 52 (70)
T ss_dssp HHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH-HH
T ss_pred HHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH-Hh
Confidence 4566788999999999999 69999999999988 53
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.52 E-value=0.0086 Score=32.97 Aligned_cols=42 Identities=12% Similarity=0.290 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCC----------cHHHHHhhCC----CCChhhHHHHHHHhhhhhhhhh
Q 039547 3 RLICRLFAISES----------RWSVIAAHLP----GRTDNETNNYYKNTKLKRKHEE 46 (67)
Q Consensus 3 ~ll~~~~~~~G~----------kW~~Ia~~lp----gRt~~~vknrw~~~~l~~~~~~ 46 (67)
.+||+++.++.. .|..||..|. .||+.+|+++| .+ |++.++.
T Consensus 13 ~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~-~n-L~k~Yk~ 68 (86)
T 2ebi_A 13 RSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKW-RN-LLKEFKK 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHH-HH-HHHHHCS
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHHHHH
Confidence 456666665332 5999999873 79999999999 65 4443333
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=85.86 E-value=0.15 Score=36.45 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..+..+.+..||..|..|+++||+||-.+|-.+|
T Consensus 197 ~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 197 KVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 3455677889999999999999999999998876
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=81.15 E-value=2.1 Score=28.85 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISES-RWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw 35 (67)
...+.....||. .|..||..|+|.|...|+.++
T Consensus 119 ~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 119 NQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp HHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 345677889995 899999999999999998765
No 54
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=79.94 E-value=4 Score=20.13 Aligned_cols=32 Identities=16% Similarity=-0.008 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-.+..||..+ |-|...|+++.
T Consensus 21 r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~ 52 (70)
T 2o8x_A 21 REALLLTQLLGLSYADAAAVC-GCPVGTIRSRV 52 (70)
T ss_dssp HHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 456667667888999999999 88999999987
No 55
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=79.06 E-value=3.1 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHhcC--------CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 5 ICRLFAISE--------SRWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 5 l~~~~~~~G--------~kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
|...+...| ++|..||..|.--.+..++..| ..+|-+
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y-~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIY-FRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHH-HHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHH-HHHHHH
Confidence 444555555 4799999988544489999999 766644
No 56
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=78.37 E-value=3.7 Score=23.52 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.6
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHH
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vkn 33 (67)
|..|..+...+|..|..+|..| |=|+..|.+
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778899999999999998 788877765
No 57
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=77.28 E-value=4.1 Score=22.95 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNY 34 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknr 34 (67)
..+..+-..+|..|..+|..| |=++..|.+.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I 49 (111)
T 2yqf_A 19 MKMAVISEHLGLSWAELAREL-QFSVEDINRI 49 (111)
T ss_dssp HHHHHHHHHHTTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 345566788999999999999 8888777663
No 58
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=75.19 E-value=6.4 Score=19.94 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHh----cCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAI----SESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~----~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-. -|-.+..||..+ |-|...|+++.
T Consensus 16 r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~ 51 (73)
T 1ku3_A 16 AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIE 51 (73)
T ss_dssp HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHH
Confidence 345555554 577899999998 89999999976
No 59
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=74.03 E-value=5.7 Score=22.79 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.2
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHH
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNY 34 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknr 34 (67)
|.-|-.+...+|..|..+|+.| |=|++.|...
T Consensus 24 ~~~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~I 55 (114)
T 2of5_A 24 DRQINQLAQRLGPEWEPMVLSL-GLSQTDIYRC 55 (114)
T ss_dssp HHHHHHHHHTCCSTHHHHHHTT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 3456667889999999999998 7888777653
No 60
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=73.80 E-value=6.2 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.7
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHH
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vkn 33 (67)
|.-|-.+...+|..|..+|+.| |=+++.|..
T Consensus 24 ~~~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 24 DRQINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3456667789999999999998 777777665
No 61
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=73.38 E-value=8.9 Score=21.33 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=19.9
Q ss_pred CcHHHHHhhCCCCC----hhhHHHHHHHhhhhh
Q 039547 14 SRWSVIAAHLPGRT----DNETNNYYKNTKLKR 42 (67)
Q Consensus 14 ~kW~~Ia~~lpgRt----~~~vknrw~~~~l~~ 42 (67)
+.|..||..|.--+ +..++..| ..+|-+
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y-~k~L~~ 97 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHY-ERILHP 97 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHH-HHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHH-HHHhHH
Confidence 47999999994322 46788888 666544
No 62
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=73.24 E-value=2.6 Score=28.43 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.0
Q ss_pred ChHHHHHHHHhcCC----cHHHHH---h---------hCCCCChhhHHHHHHHhhhh
Q 039547 1 EDRLICRLFAISES----RWSVIA---A---------HLPGRTDNETNNYYKNTKLK 41 (67)
Q Consensus 1 Ed~ll~~~~~~~G~----kW~~Ia---~---------~lpgRt~~~vknrw~~~~l~ 41 (67)
||..|+-....+|- .|..|. + ++.-||+..|..|. ++.++
T Consensus 219 EDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc-~tLi~ 274 (304)
T 1ofc_X 219 EDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC-NTLIT 274 (304)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH-HHHHH
Confidence 67788888888884 699886 2 56789999999999 77664
No 63
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=72.00 E-value=6.7 Score=19.57 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHHHH----hcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFA----ISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~----~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++- .-|-.+..||..| |-|...|+++.
T Consensus 11 r~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~ 46 (68)
T 2p7v_B 11 AKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIE 46 (68)
T ss_dssp HHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 34555554 3477899999999 89999999987
No 64
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=71.39 E-value=5.2 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHHhcC---CcHHHHHh--hCCCCChhhHHHHH
Q 039547 3 RLICRLFAISE---SRWSVIAA--HLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G---~kW~~Ia~--~lpgRt~~~vknrw 35 (67)
..+++.+..|| .+|..|+. .|+++|...|+..+
T Consensus 16 r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 16 RRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp HHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 45788899999 47999985 47899999999876
No 65
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=70.72 E-value=6.6 Score=22.06 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vkn 33 (67)
..+-.+...+|..|..+|..| |=+++.|.+
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 445566788899999999999 788887766
No 66
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=70.34 E-value=4 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=21.8
Q ss_pred cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 15 RWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 15 kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
+|..||..|.--.+..+++.| ..+|-+
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y-~k~L~~ 97 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIY-FRILLP 97 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHCCChHHHHHHHH-HHHHHH
Confidence 699999988544489999999 777755
No 67
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=69.95 E-value=9.7 Score=20.13 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-.-..||..| |-+...|+++.
T Consensus 43 r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l 74 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRL 74 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 456677667788899999999 89999999987
No 68
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=69.76 E-value=10 Score=21.66 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHhcC--------CcHHHHHhhCCCCC----hhhHHHHHHHhhhhh
Q 039547 5 ICRLFAISE--------SRWSVIAAHLPGRT----DNETNNYYKNTKLKR 42 (67)
Q Consensus 5 l~~~~~~~G--------~kW~~Ia~~lpgRt----~~~vknrw~~~~l~~ 42 (67)
|...+...| ++|..||..|.--. +..++..| ..+|-+
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y-~k~L~~ 93 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHY-ERIVYP 93 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHH-HHTTHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHH-HHHHHH
Confidence 444555566 47999999983322 45688888 655543
No 69
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=66.00 E-value=14 Score=21.24 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=20.4
Q ss_pred CcHHHHHhhCCCCC----hhhHHHHHHHhhhhh
Q 039547 14 SRWSVIAAHLPGRT----DNETNNYYKNTKLKR 42 (67)
Q Consensus 14 ~kW~~Ia~~lpgRt----~~~vknrw~~~~l~~ 42 (67)
++|..||..|.--+ +..+|+.| ..+|-+
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y-~k~L~~ 104 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQY-IQYLFA 104 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHH-HHHTHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHH-HHHHHH
Confidence 47999999984332 45789999 777755
No 70
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.34 E-value=15 Score=21.12 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=19.6
Q ss_pred CcHHHHHhhCCCCC----hhhHHHHHHHhhhhh
Q 039547 14 SRWSVIAAHLPGRT----DNETNNYYKNTKLKR 42 (67)
Q Consensus 14 ~kW~~Ia~~lpgRt----~~~vknrw~~~~l~~ 42 (67)
++|..||..|.--+ +..+|..| ..+|-+
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y-~k~L~~ 95 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHY-ERILNP 95 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHH-HHTHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHH-HHHhHH
Confidence 47999999984322 35788888 666544
No 71
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=64.41 E-value=5.7 Score=21.69 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCcHHHHHhhCCCCChhhHHH
Q 039547 4 LICRLFAISESRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 4 ll~~~~~~~G~kW~~Ia~~lpgRt~~~vkn 33 (67)
.+-.+...+|..|..+|..| |=|++.|..
T Consensus 16 ~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 16 AFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 34456678899999999998 788877765
No 72
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=62.09 E-value=13 Score=20.75 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=19.6
Q ss_pred CcHHHHHhhCCC---C--ChhhHHHHHHHhhhhh
Q 039547 14 SRWSVIAAHLPG---R--TDNETNNYYKNTKLKR 42 (67)
Q Consensus 14 ~kW~~Ia~~lpg---R--t~~~vknrw~~~~l~~ 42 (67)
+.|..||..|.. - .+..+++.| ..+|-+
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y-~k~L~~ 87 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHY-ERLILP 87 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHH-HHHTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHH-HHHHHH
Confidence 479999998832 1 246799998 666643
No 73
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=61.78 E-value=8.5 Score=20.98 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.5
Q ss_pred CcHHHHHhhCCCC----ChhhHHHHHHHhhhh
Q 039547 14 SRWSVIAAHLPGR----TDNETNNYYKNTKLK 41 (67)
Q Consensus 14 ~kW~~Ia~~lpgR----t~~~vknrw~~~~l~ 41 (67)
++|..||..|.-- .+..+++.| ..+|-
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y-~k~L~ 88 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHY-ERILY 88 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHH-TTTTH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHH-HHHHH
Confidence 4799999988322 245788888 65554
No 74
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=59.90 E-value=18 Score=19.33 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ ..|-.-..||..| |-|...|+++.
T Consensus 33 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l 63 (95)
T 3c57_A 33 RTLLGLL-SEGLTNKQIADRM-FLAEKTVKNYV 63 (95)
T ss_dssp HHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 4566676 7788899999999 88999999987
No 75
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=59.13 E-value=23 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-....||..| |-|...|+++.
T Consensus 146 r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l 177 (194)
T 1or7_A 146 RMAITLRELDGLSYEEIAAIM-DCPVGTVRSRI 177 (194)
T ss_dssp HHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHH
T ss_pred HHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 456667667788899999999 89999999987
No 76
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=58.48 E-value=19 Score=21.29 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=25.1
Q ss_pred HHHHHHhcC--------CcHHHHHhhCC--CC---ChhhHHHHHHHhhhhh
Q 039547 5 ICRLFAISE--------SRWSVIAAHLP--GR---TDNETNNYYKNTKLKR 42 (67)
Q Consensus 5 l~~~~~~~G--------~kW~~Ia~~lp--gR---t~~~vknrw~~~~l~~ 42 (67)
|...+...| ++|..||..|. .. .+..+++.| ..+|-+
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y-~k~L~~ 118 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY-MKYLYP 118 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHH-HHHSSH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH-HHHHHH
Confidence 444555555 47999999983 22 246799999 777765
No 77
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=57.74 E-value=8.7 Score=26.63 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhcC----CcHHHHHhh------------CCCCChhhHHHHHHHhhhh
Q 039547 1 EDRLICRLFAISE----SRWSVIAAH------------LPGRTDNETNNYYKNTKLK 41 (67)
Q Consensus 1 Ed~ll~~~~~~~G----~kW~~Ia~~------------lpgRt~~~vknrw~~~~l~ 41 (67)
||..||-....+| +.|..|-.. |.-||+..|..|+ ++.++
T Consensus 235 EDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc-~tLi~ 290 (374)
T 2y9y_A 235 EDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG-NTLLQ 290 (374)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH-HHHHH
Confidence 6777887778888 469888433 4789999999999 87664
No 78
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=57.70 E-value=18 Score=18.74 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ ..|-.-..||..| |-+.+.|+++.
T Consensus 27 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l 57 (82)
T 1je8_A 27 RDILKLI-AQGLPNKMIARRL-DITESTVKVHV 57 (82)
T ss_dssp HHHHHHH-TTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 4566665 6788899999999 88999999987
No 79
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=57.40 E-value=24 Score=20.24 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHhcC--------CcHHHHHhhCC--CC---ChhhHHHHHHHhhhhh
Q 039547 5 ICRLFAISE--------SRWSVIAAHLP--GR---TDNETNNYYKNTKLKR 42 (67)
Q Consensus 5 l~~~~~~~G--------~kW~~Ia~~lp--gR---t~~~vknrw~~~~l~~ 42 (67)
|...+...| ++|..||..|. .. .+..+|..| ..+|-+
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y-~k~L~~ 106 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY-MKYLYP 106 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH-HHHTHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH-HHHHHH
Confidence 444555556 47999999983 22 146799999 777765
No 80
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=57.35 E-value=17 Score=18.21 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ ..|-....||..| |-+...|+++.
T Consensus 22 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~ 52 (79)
T 1x3u_A 22 RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHR 52 (79)
T ss_dssp HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3456665 6777889999999 78999999877
No 81
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=56.74 E-value=21 Score=19.09 Aligned_cols=31 Identities=16% Similarity=-0.005 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++. -|-.-..||..| |-+.+.|+++.
T Consensus 35 ~~Vl~l~~-~G~s~~eIA~~L-~iS~~TV~~~~ 65 (90)
T 3ulq_B 35 CLILQEVE-KGFTNQEIADAL-HLSKRSIEYSL 65 (90)
T ss_dssp HHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 34566665 788899999999 88999999987
No 82
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=56.52 E-value=22 Score=20.54 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=24.7
Q ss_pred HHHHHHhcC--------CcHHHHHhhC--CCC---ChhhHHHHHHHhhhhh
Q 039547 5 ICRLFAISE--------SRWSVIAAHL--PGR---TDNETNNYYKNTKLKR 42 (67)
Q Consensus 5 l~~~~~~~G--------~kW~~Ia~~l--pgR---t~~~vknrw~~~~l~~ 42 (67)
|...+...| ++|..||..| |.- ....+++.| ..+|-+
T Consensus 47 Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y-~k~L~~ 96 (121)
T 2rq5_A 47 FFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAY-CQYLLS 96 (121)
T ss_dssp HHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHH-HTTHHH
T ss_pred HHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH-HHHhHH
Confidence 455556666 4799999998 322 235688988 666644
No 83
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=50.92 E-value=23 Score=20.64 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 2 DRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 2 d~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
|..|+.+..+-|. .|..||+.+ |=|...|..|. +.....
T Consensus 5 d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl-~~L~~~ 44 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRI-QKMEED 44 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHH-HHHHHC
Confidence 5567777766664 799999999 89999999999 543333
No 84
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=50.80 E-value=25 Score=18.30 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=24.2
Q ss_pred HHHHHHHh----cCCcHHHHHhhCCCCChhhHHHHH
Q 039547 4 LICRLFAI----SESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 4 ll~~~~~~----~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
.++.++-- -|-.+..||..| |-|...|+++-
T Consensus 25 ~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~ 59 (87)
T 1tty_A 25 MVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIE 59 (87)
T ss_dssp HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHH
Confidence 45555544 467899999998 89999999976
No 85
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.00 E-value=38 Score=20.04 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-....||..| |-|...|+.+.
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~ 224 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLK 224 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHH
Confidence 445666666788899999999 89999999987
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=49.19 E-value=31 Score=19.05 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 4 LICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 4 ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
.++. +-..|-....||..| |-|...|+++.
T Consensus 116 ~v~~-~~~~g~s~~EIA~~l-gis~~tV~~~~ 145 (164)
T 3mzy_A 116 EVLT-YLIRGYSYREIATIL-SKNLKSIDNTI 145 (164)
T ss_dssp HHHH-HHTTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHH-HHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 3444 456778899999999 89999999987
No 87
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=48.71 E-value=22 Score=18.67 Aligned_cols=31 Identities=16% Similarity=-0.104 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ ..|-.-..||..| |-+.+.|+++.
T Consensus 35 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l 65 (91)
T 2rnj_A 35 MEILLLI-AKGYSNQEIASAS-HITIKTVKTHV 65 (91)
T ss_dssp HHHHHHH-HTTCCTTHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3455665 5777888999999 88999999987
No 88
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=47.61 E-value=23 Score=20.40 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=20.2
Q ss_pred HHHHhcCCcHHHHHhhCCCCChhhHHHH
Q 039547 7 RLFAISESRWSVIAAHLPGRTDNETNNY 34 (67)
Q Consensus 7 ~~~~~~G~kW~~Ia~~lpgRt~~~vknr 34 (67)
.+...+|..|..+|..| |=+++.|...
T Consensus 11 ~Ia~~lG~~Wk~LAR~L-Glse~dId~I 37 (122)
T 3ezq_B 11 VICDNVGKDWRRLARQL-KVSDTKIDSI 37 (122)
T ss_dssp HHHTTCCTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHh-CCCHHHHHHH
Confidence 34467899999999998 6777666543
No 89
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.59 E-value=25 Score=17.21 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ ..|-....||..+ |-|...|+.+.
T Consensus 17 ~~il~~~-~~g~s~~eIA~~l-~is~~tV~~~~ 47 (74)
T 1fse_A 17 REVFELL-VQDKTTKEIASEL-FISEKTVRNHI 47 (74)
T ss_dssp HHHHHHH-TTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 3456665 6677889999999 78999999887
No 90
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=45.66 E-value=11 Score=24.92 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.1
Q ss_pred ChHHHHHHHHhcC-CcHHHHHh
Q 039547 1 EDRLICRLFAISE-SRWSVIAA 21 (67)
Q Consensus 1 Ed~ll~~~~~~~G-~kW~~Ia~ 21 (67)
||..|+-.+-+|| ..|..|..
T Consensus 175 dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 175 EDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHhc
Confidence 5888999999999 68999874
No 91
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.58 E-value=38 Score=18.78 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-....||..| |-|...|+++.
T Consensus 31 r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l 62 (113)
T 1xsv_A 31 RNYLELFYLEDYSLSEIADTF-NVSRQAVYDNI 62 (113)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345666667788899999999 88999999886
No 92
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=44.79 E-value=30 Score=19.75 Aligned_cols=32 Identities=16% Similarity=-0.036 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-.-..||..| |-+.+.|+++.
T Consensus 99 r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l 130 (157)
T 2lfw_A 99 RQALLLTAMEGFSPEDAAYLI-EVDTSEVETLV 130 (157)
T ss_dssp HHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345555556677889999999 89999999987
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=44.67 E-value=33 Score=17.83 Aligned_cols=32 Identities=6% Similarity=-0.154 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCc---HHHHHhhC--CCCChhhHHHHH
Q 039547 4 LICRLFAISESR---WSVIAAHL--PGRTDNETNNYY 35 (67)
Q Consensus 4 ll~~~~~~~G~k---W~~Ia~~l--pgRt~~~vknrw 35 (67)
..++.+..+|.. +..|-..| +|.|-.+|+.+.
T Consensus 17 ~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 17 KFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 456788899954 77888876 699999999886
No 94
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=43.19 E-value=36 Score=20.71 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCcHHHHHhhCCCCChhhHHHH
Q 039547 4 LICRLFAISESRWSVIAAHLPGRTDNETNNY 34 (67)
Q Consensus 4 ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknr 34 (67)
.+-.+...+|..|..+|..+ |=+++.|...
T Consensus 100 ~~~~ia~~lg~~Wk~Lar~L-gl~~~~I~~I 129 (191)
T 2gf5_A 100 AFNVICDNVGKDWRRLARQL-KVSDTKIDSI 129 (191)
T ss_dssp HHHHHHHSCCTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHccchhHHHHHHHc-CCCHHHHHHH
Confidence 34456678899999999998 7777776553
No 95
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=42.51 E-value=13 Score=21.48 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-....||..| |-|...|+++.
T Consensus 141 r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l 172 (184)
T 2q1z_A 141 RALIERAFFGDLTHRELAAET-GLPLGTIKSRI 172 (184)
T ss_dssp HHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345666667788888999998 89999999987
No 96
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=41.14 E-value=28 Score=19.33 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=21.5
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCC---ChhhHHH
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGR---TDNETNN 33 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgR---t~~~vkn 33 (67)
+.+|.+|+..|| |...+..++=| ++.+||.
T Consensus 18 E~ilt~Lv~~YG--W~~L~~~i~I~CF~~~PSikS 50 (88)
T 2jvw_A 18 QKLLTELVEHYG--WEELSYMVNINCFKKDPSIKS 50 (88)
T ss_dssp HHHHHHHHHHTC--HHHHHHHTTSSSTTSSCCHHH
T ss_pred HHHHHHHHHHhC--HHHHHhhcccccCCCCCchHH
Confidence 568889999998 99888877533 3444544
No 97
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.72 E-value=37 Score=16.70 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.3
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhC
Q 039547 1 EDRLICRLFAISESRWSVIAAHL 23 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~l 23 (67)
|.++|.+....+|.+.+..|+.+
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 45678888899998999999887
No 98
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=36.30 E-value=19 Score=19.71 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=20.1
Q ss_pred HhcCCcHHHHHhhCCCCChhhHHHH
Q 039547 10 AISESRWSVIAAHLPGRTDNETNNY 34 (67)
Q Consensus 10 ~~~G~kW~~Ia~~lpgRt~~~vknr 34 (67)
...|..|...|..| |=++..|...
T Consensus 15 ~~~G~dW~~LA~~L-g~~~~~I~~i 38 (91)
T 2ib1_A 15 GEPAKGWQELAGHL-GYQAEAVETM 38 (91)
T ss_dssp TCCSSTHHHHHHHH-TCCHHHHHHH
T ss_pred CCCCccHHHHHHHc-CCCHHHHHHH
Confidence 55689999999998 8888888774
No 99
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=34.70 E-value=55 Score=17.50 Aligned_cols=42 Identities=26% Similarity=0.196 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhh
Q 039547 2 DRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKH 44 (67)
Q Consensus 2 d~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~ 44 (67)
++.|+++-...|. +=-.||+.|.-||..+|-..- +..-++.+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~L-Y~m~~~~l 54 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDL-YRMKSRHL 54 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHH-HHHHHTTS
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHH-HHHHHccC
Confidence 4668888888996 566799999999999987654 44333333
No 100
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=33.60 E-value=32 Score=18.43 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=16.7
Q ss_pred CCcHHHHHhhCCCCChhhHHH
Q 039547 13 ESRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 13 G~kW~~Ia~~lpgRt~~~vkn 33 (67)
|+.|...|..| |=+...|.+
T Consensus 21 g~dW~~LA~~L-g~~~~~I~~ 40 (85)
T 1ngr_A 21 GDTWRHLAGEL-GYQPEHIDS 40 (85)
T ss_dssp TTHHHHHHHHT-TCCHHHHHH
T ss_pred cCCHHHHHHHc-CCCHHHHHH
Confidence 99999999998 667767666
No 101
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=33.12 E-value=43 Score=24.48 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=24.7
Q ss_pred hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHH
Q 039547 2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNY 34 (67)
Q Consensus 2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknr 34 (67)
|..|..+-..+|..|..+|..| |=++..|.+.
T Consensus 498 d~~L~~Ia~~LG~DWk~LAr~L-G~s~~dId~I 529 (581)
T 4d8o_A 498 EERLAYIADHLGFSWTELAREL-DFTEEQIHQI 529 (581)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHT-TCCHHHHHHH
T ss_pred hhHHHHHHHhcccCHHHHHHHc-CCCHHHHHHH
Confidence 4566677789999999999999 7776666553
No 102
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=32.64 E-value=66 Score=17.83 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++-..|-.-..||..+ |-|...|+++.
T Consensus 28 r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l 59 (113)
T 1s7o_A 28 MNYIELYYADDYSLAEIADEF-GVSRQAVYDNI 59 (113)
T ss_dssp HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345666667788899999998 89999999887
No 103
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.23 E-value=44 Score=15.68 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ ..|-.-..||..| |-+.+.|+++.
T Consensus 4 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~ 34 (61)
T 2jpc_A 4 RQVLKLI-DEGYTNHGISEKL-HISIKTVETHR 34 (61)
T ss_dssp HHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHH
Confidence 3455564 5677788999999 88999999987
No 104
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.26 E-value=77 Score=17.81 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=28.0
Q ss_pred hHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547 2 DRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKL 40 (67)
Q Consensus 2 d~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l 40 (67)
|..|+.+...-| -.++.||+.+ |=|...|..+. +...
T Consensus 11 d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l-~~L~ 48 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADIL-NTTRQRIARRI-DKLK 48 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH-HHHH
Confidence 455666666666 4799999998 78999999998 5433
No 105
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=30.24 E-value=55 Score=18.78 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.1
Q ss_pred HHHHHHHhcC-CcHHHHHhhCCCCChhhHHH
Q 039547 4 LICRLFAISE-SRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 4 ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vkn 33 (67)
.|.......| .+|..+++.+ |=|++.|..
T Consensus 15 ~l~~i~d~v~~~~WK~~aRkL-GLse~~Id~ 44 (112)
T 1ich_A 15 TLYAVVENVPPLRWKEFVKRL-GLSDHEIDR 44 (112)
T ss_dssp HHHHHHHHSCSTTHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHc-CCCHHHHHH
Confidence 5667778888 5899999998 788887755
No 106
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.46 E-value=90 Score=18.35 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=28.0
Q ss_pred hHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhh
Q 039547 2 DRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTK 39 (67)
Q Consensus 2 d~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~ 39 (67)
|..|+.+...-|. .++.||+.+ |-|...|..|. ...
T Consensus 29 d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl-~~L 65 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKIT-GLAESTIHERI-RKL 65 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHH-HHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH-HHH
Confidence 4566776666664 799999998 78999999998 443
No 107
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.28 E-value=76 Score=17.16 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 4 LICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 4 ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
.++.++ .-|-.-..||..| |-+.+.|+++.
T Consensus 41 ~Vl~l~-~~G~s~~EIA~~L-~iS~~TV~~~l 70 (99)
T 1p4w_A 41 EVLRLF-AEGFLVTEIAKKL-NRSIKTISSQK 70 (99)
T ss_dssp HHHHHH-HHTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 455555 3688889999999 78999999876
No 108
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.74 E-value=74 Score=16.76 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.3
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHH
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNN 33 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vkn 33 (67)
|..+|.+....+|.+.+..|+.| |=+-+.+..
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 45677788888888888888877 555444443
No 109
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=25.00 E-value=94 Score=18.82 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
+.|+..=..-|=.|..||..+ |+|..-+-.-+
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~vtaa~ 47 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFVTAAL 47 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHH
Confidence 345666667788999999999 78877665544
No 110
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.75 E-value=83 Score=16.70 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=21.6
Q ss_pred ChHHHHHHHHhcCCcHHHHHhhCCCCChhhH
Q 039547 1 EDRLICRLFAISESRWSVIAAHLPGRTDNET 31 (67)
Q Consensus 1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~v 31 (67)
|.++|.+....+|.+.+..|+.| |=+.+.+
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L-GISR~TL 71 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL-NMHRRTL 71 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH-TSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh-CCCHHHH
Confidence 45678888889998888888877 4444444
No 111
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.24 E-value=1.3e+02 Score=18.61 Aligned_cols=31 Identities=26% Similarity=0.052 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 3 RLICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 3 ~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
..++.++ .-|-.-..||..| |-+.+.|+.+-
T Consensus 203 revl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l 233 (258)
T 3clo_A 203 KEILRCI-RKGLSSKEIAATL-YISVNTVNRHR 233 (258)
T ss_dssp HHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3456666 5788899999999 99999999987
No 112
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=22.78 E-value=87 Score=16.91 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=20.9
Q ss_pred HhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 10 AISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 10 ~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
...|..-..|+..|.||+-..|-.-.
T Consensus 43 ~~t~~Sl~~IG~~fggrdHsTV~ha~ 68 (94)
T 1j1v_A 43 ELTNHSLPEIGDAFGGRDHTTVLHAC 68 (94)
T ss_dssp HHSCCCHHHHHHHTTSCCHHHHHHHH
T ss_pred HHHCcCHHHHHHHhCCCCHHHHHHHH
Confidence 44567889999999999888776655
No 113
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=22.70 E-value=18 Score=21.48 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547 4 LICRLFAISESRWSVIAAHLPGRTDNETNNYY 35 (67)
Q Consensus 4 ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw 35 (67)
.++.++-..|-....||..| |-|...|+++.
T Consensus 205 ~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~~ 235 (243)
T 1l0o_C 205 LIVYLRYYKDQTQSEVASRL-GISQVQMSRLE 235 (243)
T ss_dssp --------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 34555555666778899888 77888888876
No 114
>4dth_A VGRG protein; alpha-beta protein, actin cross-linking toxin, G-actin, TOXI; HET: ATP; 1.78A {Vibrio cholerae} PDB: 4dtd_A* 4dtf_A* 4e1c_A* 4e1d_A* 4dtl_A*
Probab=21.86 E-value=30 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHhcC---CcHHHHHhhC----CCCChhhHHHHHHHh
Q 039547 7 RLFAISE---SRWSVIAAHL----PGRTDNETNNYYKNT 38 (67)
Q Consensus 7 ~~~~~~G---~kW~~Ia~~l----pgRt~~~vknrw~~~ 38 (67)
+|-.+|| |.|...+..+ .|=||..|||-| .-
T Consensus 240 ~LA~eyGI~In~WDP~sEg~~PnA~GLTDPkVKNAW-~I 277 (396)
T 4dth_A 240 ELAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAW-EI 277 (396)
T ss_dssp HHHHHHTCCBTTBCGGGGTCCCCSSSTTSHHHHHHH-SE
T ss_pred HHHHHhCcccCCCChhhhcCCCCcccCCCccccchh-hh
Confidence 4556777 7897766555 689999999999 53
No 115
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.55 E-value=1.2e+02 Score=17.04 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 2 DRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 2 d~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
|..|+.+...-|. .++.||..+ |-|...|..+. +.....
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l-~~L~~~ 48 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT-GLAESTIHERI-RKLRES 48 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH-HHHHHC
Confidence 4456666666664 799999998 78999999998 544333
No 116
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.40 E-value=1.1e+02 Score=16.71 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547 2 DRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKR 42 (67)
Q Consensus 2 d~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~ 42 (67)
|..|+.....-| -.++.||..+ |-|...|..+. ......
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l-~~L~~~ 45 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL-GISETAVRKRV-KALEEK 45 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH-HHHHHC
Confidence 345666666555 4799999999 89999999998 544333
No 117
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.31 E-value=1.3e+02 Score=17.16 Aligned_cols=33 Identities=6% Similarity=-0.084 Sum_probs=23.9
Q ss_pred cCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhh
Q 039547 12 SESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEE 46 (67)
Q Consensus 12 ~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~ 46 (67)
.++.-..||..| |-+...|-..- ...+++.+..
T Consensus 50 ~~ps~~~LA~~~-~~s~~~v~~~L-~~L~~KGlI~ 82 (135)
T 2v79_A 50 YFPTPNQLQEGM-SISVEECTNRL-RMFIQKGFLF 82 (135)
T ss_dssp CSCCHHHHHTTS-SSCHHHHHHHH-HHHHHHTSCE
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHH-HHHHHCCCEE
Confidence 445678899888 78888888877 6666665443
Done!