Query 039554
Match_columns 189
No_of_seqs 169 out of 1261
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 8.2E-42 1.8E-46 306.1 11.2 189 1-189 58-246 (620)
2 KOG0873 C-4 sterol methyl oxid 99.9 2.2E-25 4.8E-30 184.5 12.9 155 11-177 55-222 (283)
3 COG3000 ERG3 Sterol desaturase 99.8 3.2E-19 7E-24 149.7 14.7 107 73-189 98-205 (271)
4 PF04116 FA_hydroxylase: Fatty 99.7 2.1E-17 4.6E-22 120.3 5.2 100 80-189 7-107 (114)
5 KOG0872 Sterol C5 desaturase [ 99.6 4.4E-15 9.5E-20 122.3 9.5 132 30-169 80-223 (312)
6 KOG0874 Sphingolipid hydroxyla 99.4 8E-14 1.7E-18 111.8 2.4 94 73-172 125-221 (287)
7 PLN02601 beta-carotene hydroxy 95.8 0.16 3.5E-06 42.7 10.7 30 79-110 145-175 (303)
8 PLN02434 fatty acid hydroxylas 85.0 21 0.00045 29.6 11.4 40 80-121 93-140 (237)
9 PRK07424 bifunctional sterol d 81.2 4.2 9E-05 36.3 5.9 35 81-115 19-53 (406)
10 PRK10633 hypothetical protein; 72.3 14 0.00031 25.4 5.3 44 28-71 4-51 (80)
11 KOG1600 Fatty acid desaturase 70.0 7.1 0.00015 33.7 4.1 16 32-47 34-49 (321)
12 COG3924 Predicted membrane pro 66.7 19 0.00042 24.3 4.8 43 29-71 5-51 (80)
13 PF06196 DUF997: Protein of un 62.2 23 0.0005 24.3 4.8 42 30-71 1-51 (80)
14 PLN02434 fatty acid hydroxylas 53.0 18 0.0004 29.9 3.6 50 76-126 172-224 (237)
15 PF11712 Vma12: Endoplasmic re 29.5 1.8E+02 0.004 21.7 5.6 11 78-88 123-133 (142)
16 cd03510 Rhizobitoxine-FADS-lik 21.4 2.9E+02 0.0062 21.4 5.5 57 93-169 68-124 (175)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=8.2e-42 Score=306.08 Aligned_cols=189 Identities=79% Similarity=1.411 Sum_probs=177.3
Q ss_pred CccceeehhccCcchhhhcCccCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHhhhh
Q 039554 1 MLHNQKWINLSRYRTAKGSNRIVDKAIEFEQVERERNWDDQIIFNGILFYVFSKILPGTTQLSFWRLDGVILTALLHAGP 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~kiq~~~~~~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~ll~~~~ 80 (189)
++++|+|++++|+.++.+|+||++|..+.+|++||++||+++++++++++++...+|..+.+|.|...+++..+++|+++
T Consensus 58 ~l~~q~W~s~sr~~~~~~~~ri~~~~i~f~QvDre~~wDd~iil~~l~~~~~~~~~p~~~~~P~W~~~g~l~~~Llhv~~ 137 (620)
T PLN02869 58 MLHNQLWISLSRYRTAKGNNRIVDKGIEFEQVDRERNWDDQILFNGILFYVGYMILPGASHMPLWRTDGVLITILLHMGP 137 (620)
T ss_pred HHHHHHHHHHHhhhhhhhceeeeccCCCceeeccccccchHHHHHHHHHHHHHHhhhhhhcCcccccchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999998888889999999988788889999999
Q ss_pred hhHHHHhHHhhcChhhhhhhhhhccCCCCCCCcchhcccCHHhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 039554 81 VDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSVIHPFAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMN 160 (189)
Q Consensus 81 ~D~~~Yw~HR~~H~~~~~w~~H~vHH~~~~p~~~t~~~hp~~E~~~~~~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
.|+++||.||++|++++||++|++||++++|+++|+++||++|.+.+..++.+|+++.++.+..|..++.+++++..+.+
T Consensus 138 ~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g~~hi~t~~~yli~~~f~~ 217 (620)
T PLN02869 138 VEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMN 217 (620)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888887677888998877777778999999999999999
Q ss_pred hhccccceeecccccccCCCceEEeeCCC
Q 039554 161 NMGHCNFELVPNWLFTIFPPLKYLMYSPS 189 (189)
Q Consensus 161 ~~~Hsg~~~~p~~~~~~~~~l~~v~~TP~ 189 (189)
+++|||+|++|+++.+.+|+++|+++||+
T Consensus 218 ~~gHSN~El~P~~~~~~~ppLkyll~TPs 246 (620)
T PLN02869 218 NMGHCNFELIPKWLFSIFPPLKYLMYTPS 246 (620)
T ss_pred cccccCccccccchhccCCcchheecCch
Confidence 99999999999998887899999999995
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.93 E-value=2.2e-25 Score=184.45 Aligned_cols=155 Identities=19% Similarity=0.333 Sum_probs=120.8
Q ss_pred cCcchhhhcCccCCC-CCCHHHHHHHHHhhhhHHHHHHHHHHHHH----------hcCCCCCCCCcchhHHHHHHHHhhh
Q 039554 11 SRYRTAKGSNRIVDK-AIEFEQVERERNWDDQIIFNGILFYVFSK----------ILPGTTQLSFWRLDGVILTALLHAG 79 (189)
Q Consensus 11 ~~~~~~~~~~kiq~~-~~~~~~i~~e~~~~~~~~~~~~~~~~~~~----------~~~~~~~~p~w~~~~~~~~~ll~~~ 79 (189)
++++.++||||||++ +++.+++++++|. ++.|.+++..+.. ..+....+|.|.. ++..++++.+
T Consensus 55 t~~~~~~~rYKIQp~k~~s~~~~~kc~k~---vl~n~~~v~~p~~~~~y~~~~~~~~~~~~plPt~~~--~l~~l~i~~l 129 (283)
T KOG0873|consen 55 TNRPPFLRRYKIQPKKNPSLSKQLKCLKV---VLLNHFLVVLPLTLVSYPFVEWFGLPSGAPLPSWKE--MLAQLVVFFL 129 (283)
T ss_pred ccCcchhhhhccCCCCCCCHHHHHHHHHH---HHHHHHHHHhhHHHHhHHHHHHhCCCcCCCCCcHHH--HHHHHHHHHH
Confidence 346779999999985 5588888888885 4466666655542 1222234667776 5667777777
Q ss_pred hhhHHHHhHHhhcChhhhhhhhhhccCCCCCCCcchhc-ccCHHhHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 039554 80 PVDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSV-IHPFAEHIAY-FALLSIPLVTTVLIGTASIVSIFGYIIFID 157 (189)
Q Consensus 80 ~~D~~~Yw~HR~~H~~~~~w~~H~vHH~~~~p~~~t~~-~hp~~E~~~~-~~~~~ipl~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
+.|+++||.||+.|.+++|+.+||+||+..+|.+.++. .||. |.+.. ...+..|+++. .|..+.+++.++..
T Consensus 130 iEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~YaHp~-E~~~lg~~~~~~p~~~~-----~H~~t~wiw~~l~i 203 (283)
T KOG0873|consen 130 IEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEYAHPL-EHLFLGLGTVMGPALLC-----GHVITLWIWIALRI 203 (283)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhhcCHH-HHHHcCChhhhhhHHhh-----hHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999995 7887 88873 33455555432 29999999999999
Q ss_pred HHhhhccccceeeccccccc
Q 039554 158 LMNNMGHCNFELVPNWLFTI 177 (189)
Q Consensus 158 ~~~~~~Hsg~~~~p~~~~~~ 177 (189)
+.++..||||++ |....+-
T Consensus 204 ~~t~~~HsGY~f-Pwsl~~~ 222 (283)
T KOG0873|consen 204 LETVESHSGYDF-PWSLSKL 222 (283)
T ss_pred HHHhhccCCCCC-Ccccccc
Confidence 999999999997 8766653
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.82 E-value=3.2e-19 Score=149.70 Aligned_cols=107 Identities=34% Similarity=0.477 Sum_probs=89.6
Q ss_pred HHHHhhhhhhHHHHhHHhhcChhhhhhhhhhccCCCCCCCcchhc-ccCHHhHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 039554 73 TALLHAGPVDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSV-IHPFAEHIAYFALLSIPLVTTVLIGTASIVSIFG 151 (189)
Q Consensus 73 ~~ll~~~~~D~~~Yw~HR~~H~~~~~w~~H~vHH~~~~p~~~t~~-~hp~~E~~~~~~~~~ipl~~~~~~~~~~~~~~~~ 151 (189)
++++..++.|+++||.||+.|+++++|++|++||++++|+++|+. .||+ |.++......+|+.+.+ .++.++.+
T Consensus 98 ~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~-e~ll~~~~~~~~~~l~~----~~~~~~~~ 172 (271)
T COG3000 98 QLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPL-EILLLAFLGLLPLLLLG----LSPVAVAL 172 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChH-HHHHHHHHHHHHHHHhc----CCHHHHHH
Confidence 333334468999999999999999999999999999999999998 5777 88876555666665543 78899999
Q ss_pred HHHHHHHHhhhccccceeecccccccCCCceEEeeCCC
Q 039554 152 YIIFIDLMNNMGHCNFELVPNWLFTIFPPLKYLMYSPS 189 (189)
Q Consensus 152 ~~~~~~~~~~~~Hsg~~~~p~~~~~~~~~l~~v~~TP~ 189 (189)
...+..+.++++|||++. | ...++++++++||+
T Consensus 173 ~~~~~~~~~~~~H~~~~~-~----~~~~~~~~v~~~p~ 205 (271)
T COG3000 173 LFIFLLFWAVLIHSNLDL-P----LPLGWLRYVFNTPR 205 (271)
T ss_pred HHHHHHHHHHHHhcCccc-c----CCcccceeeecCch
Confidence 999999999999999996 4 24679999999995
No 4
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.69 E-value=2.1e-17 Score=120.30 Aligned_cols=100 Identities=29% Similarity=0.482 Sum_probs=76.3
Q ss_pred hhhHHHHhHHhhcChhhhhhhhhhccCCCCCCCcchhc-ccCHHhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 039554 80 PVDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSV-IHPFAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDL 158 (189)
Q Consensus 80 ~~D~~~Yw~HR~~H~~~~~w~~H~vHH~~~~p~~~t~~-~hp~~E~~~~~~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
+.|+++||.||++|+.+++|++|+.||++++|+++++. .+|+ |.++.... ++.+....++.+..++.+..++..+
T Consensus 7 ~~d~~~Y~~HRl~H~~~~l~~~H~~HH~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T PF04116_consen 7 LWDFWEYWMHRLLHKIPFLWRIHKVHHSPKNPTPLSAFRFHPL-EALLLALL---PLLLPLLLLPFHALAFLLGIALFYL 82 (114)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHhCCcccCchHHHHcChH-HHHHHHHH---HHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 47999999999999766677999999999999999997 5776 88874222 2222223346788889999999999
Q ss_pred HhhhccccceeecccccccCCCceEEeeCCC
Q 039554 159 MNNMGHCNFELVPNWLFTIFPPLKYLMYSPS 189 (189)
Q Consensus 159 ~~~~~Hsg~~~~p~~~~~~~~~l~~v~~TP~ 189 (189)
.+.++|||+.. +..++.+++++||+
T Consensus 83 ~~~~~H~~~~~------~~~~~~~~~~~~~~ 107 (114)
T PF04116_consen 83 WYIFIHSGYHH------RFPPRLRYLFVTPR 107 (114)
T ss_pred HHHHhhcCccC------CCCCcchhHhcCHH
Confidence 99999999921 12456777777763
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.60 E-value=4.4e-15 Score=122.26 Aligned_cols=132 Identities=23% Similarity=0.293 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH-----H----hcCCCC--CCCCcchhHHHHHHHHhhhhhhHHHHhHHhhcChhhhh
Q 039554 30 EQVERERNWDDQIIFNGILFYVFS-----K----ILPGTT--QLSFWRLDGVILTALLHAGPVDFLYYWLHRALHHHYLY 98 (189)
Q Consensus 30 ~~i~~e~~~~~~~~~~~~~~~~~~-----~----~~~~~~--~~p~w~~~~~~~~~ll~~~~~D~~~Yw~HR~~H~~~~~ 98 (189)
.|++.|++.+.+++--.-++.++. . .+.... ++|+-. .++.+.+++...||++||.||..|++.+|
T Consensus 80 r~~~~ei~~av~A~pw~sll~~~~~~m~i~gyskl~d~i~~~~~gw~~---~~~~i~~flfF~Df~iYw~HR~lH~~~vy 156 (312)
T KOG0872|consen 80 RQMLMEIKTAVQALPWMSLLTVPWFLMEIRGYSKLYDNIGILEYGWFL---LFVSIFLFLFFTDFGIYWAHRELHHRGVY 156 (312)
T ss_pred HHHHHHHHHHHHhcchHHHHhHHHHHHHHhhhHHhhhccCcccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 399999998776332222222221 1 233444 444333 33455555556899999999999999999
Q ss_pred hhhhhccCCCCCCCcchhc-ccCHHhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhcccccee
Q 039554 99 SRNHSHHHSSIVTEPITSV-IHPFAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMNNMGHCNFEL 169 (189)
Q Consensus 99 w~~H~vHH~~~~p~~~t~~-~hp~~E~~~~~~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hsg~~~ 169 (189)
|+.|+.||+++..+++++. .||+ +.++ ..+|-.+..+..+.|..+..+...+..++++..|.|.-.
T Consensus 157 ~~LH~~HH~~~~~tpfAslafhpi-dg~l----qaip~~I~~Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~ 223 (312)
T KOG0872|consen 157 KRLHKPHHIWNICTPFASLAFHPI-DGFL----QAIPYHIYPFIFPLHKVTYLSLFTFVNIWTISIHDGIYG 223 (312)
T ss_pred hhhcchhhhhhccCchhhhhcCcc-hhHh----hhchhHheeeeecchHHHHHHHHHHHHhHheeeeccccc
Confidence 9999999999999999997 6888 5554 334555555556678899999999999999999998854
No 6
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.41 E-value=8e-14 Score=111.80 Aligned_cols=94 Identities=24% Similarity=0.375 Sum_probs=74.6
Q ss_pred HHHHhhhhhhHHHHhHHhhcCh-hhhhhhhhhccCCCCCCCcchhc-ccCHHhHHHH-HHHHHHHHHHHHhhcchhHHHH
Q 039554 73 TALLHAGPVDFLYYWLHRALHH-HYLYSRNHSHHHSSIVTEPITSV-IHPFAEHIAY-FALLSIPLVTTVLIGTASIVSI 149 (189)
Q Consensus 73 ~~ll~~~~~D~~~Yw~HR~~H~-~~~~w~~H~vHH~~~~p~~~t~~-~hp~~E~~~~-~~~~~ipl~~~~~~~~~~~~~~ 149 (189)
.++...++.|.|+|..||.||. +.+|+.+|++||+-..|.+..+. .||+ |.++. ....++..++ .|+++-+.
T Consensus 125 q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyNhP~-EGllLDT~G~gla~l~----sglspr~a 199 (287)
T KOG0874|consen 125 QFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYNHPV-EGLLLDTIGGGLAFLL----SGLSPRTA 199 (287)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhcCcc-hhhhhhhhchHHHHHH----cCCCccce
Confidence 3334444689999999999996 88999999999999999999996 8999 76663 3334444433 35777788
Q ss_pred HHHHHHHHHHhhhccccceeecc
Q 039554 150 FGYIIFIDLMNNMGHCNFELVPN 172 (189)
Q Consensus 150 ~~~~~~~~~~~~~~Hsg~~~~p~ 172 (189)
+++..+.++.++.+|||+.+ |-
T Consensus 200 iifFtfaTiKTVDDHCGy~l-P~ 221 (287)
T KOG0874|consen 200 IIFFTFATIKTVDDHCGYWL-PG 221 (287)
T ss_pred EEEEEeeeeeeecccccccc-CC
Confidence 88889999999999999987 53
No 7
>PLN02601 beta-carotene hydroxylase
Probab=95.80 E-value=0.16 Score=42.66 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.1
Q ss_pred hhhhHHHHhHHh-hcChhhhhhhhhhccCCCCC
Q 039554 79 GPVDFLYYWLHR-ALHHHYLYSRNHSHHHSSIV 110 (189)
Q Consensus 79 ~~~D~~~Yw~HR-~~H~~~~~w~~H~vHH~~~~ 110 (189)
+..|++-.|.|| +||- ++|..|+-||+.++
T Consensus 145 vgMEf~Aw~aHKYvMHG--~LW~lH~sHH~Pr~ 175 (303)
T PLN02601 145 VGMEFWARWAHRALWHD--SLWNMHESHHKPRE 175 (303)
T ss_pred HHHHHHHHHHHHHHHHh--cchhhhhhcCCCCC
Confidence 357999999999 5665 57999999998875
No 8
>PLN02434 fatty acid hydroxylase
Probab=85.02 E-value=21 Score=29.64 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=26.2
Q ss_pred hhhHHHHhHHh-hcCh-------hhhhhhhhhccCCCCCCCcchhcccCH
Q 039554 80 PVDFLYYWLHR-ALHH-------HYLYSRNHSHHHSSIVTEPITSVIHPF 121 (189)
Q Consensus 80 ~~D~~~Yw~HR-~~H~-------~~~~w~~H~vHH~~~~p~~~t~~~hp~ 121 (189)
+.-+..|..|| +.|. ..+....|..|| +.|.-.....-|+
T Consensus 93 ~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH--~~P~D~~rLv~PP 140 (237)
T PLN02434 93 IWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHH--KHPMDGLRLVFPP 140 (237)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhh--cCCCCCCCeecCc
Confidence 47899999999 5664 244556899999 4444444443444
No 9
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=81.16 E-value=4.2 Score=36.31 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=24.0
Q ss_pred hhHHHHhHHhhcChhhhhhhhhhccCCCCCCCcch
Q 039554 81 VDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPIT 115 (189)
Q Consensus 81 ~D~~~Yw~HR~~H~~~~~w~~H~vHH~~~~p~~~t 115 (189)
.|..+=.+|-+.|....+.+.|..||+.-+++-.-
T Consensus 19 ~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~ 53 (406)
T PRK07424 19 VEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSV 53 (406)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCc
Confidence 34444455666666557788999999987776443
No 10
>PRK10633 hypothetical protein; Provisional
Probab=72.28 E-value=14 Score=25.40 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=24.5
Q ss_pred CHHHHHHHHHhhhhHH-HHHHHHHHHHH---hcCCCCCCCCcchhHHH
Q 039554 28 EFEQVERERNWDDQII-FNGILFYVFSK---ILPGTTQLSFWRLDGVI 71 (189)
Q Consensus 28 ~~~~i~~e~~~~~~~~-~~~~~~~~~~~---~~~~~~~~p~w~~~~~~ 71 (189)
+..|..||.+|+..+. +.-+.-....+ ..+++.++|.|...+++
T Consensus 4 Rf~Qa~kEA~~al~L~l~y~~~W~~~aY~~~~~~~i~GlP~WF~~sCi 51 (80)
T PRK10633 4 RFVQAHKEARWALGLTLLYLAAWLVAAYLPGNAPGFTGLPHWFEMACL 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCcHHHHHHHH
Confidence 3468999999987522 22222222222 22345678999986543
No 11
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=69.98 E-value=7.1 Score=33.68 Aligned_cols=16 Identities=25% Similarity=0.713 Sum_probs=11.6
Q ss_pred HHHHHHhhhhHHHHHH
Q 039554 32 VERERNWDDQIIFNGI 47 (189)
Q Consensus 32 i~~e~~~~~~~~~~~~ 47 (189)
..+|+.|.|.+.++++
T Consensus 34 ~~~~~~w~nv~~~~~l 49 (321)
T KOG1600|consen 34 WKRELVWRNVVLFSAL 49 (321)
T ss_pred hhcchhhhhhHHHHHH
Confidence 6899999887555444
No 12
>COG3924 Predicted membrane protein [Function unknown]
Probab=66.65 E-value=19 Score=24.29 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhHHH-HHHHHHHHHH---hcCCCCCCCCcchhHHH
Q 039554 29 FEQVERERNWDDQIIF-NGILFYVFSK---ILPGTTQLSFWRLDGVI 71 (189)
Q Consensus 29 ~~~i~~e~~~~~~~~~-~~~~~~~~~~---~~~~~~~~p~w~~~~~~ 71 (189)
..|-.+|.+|...+-+ ..++--+..+ ..++..+.|.|.+..++
T Consensus 5 f~QA~KEA~WAlgLtllYl~gW~v~AYlp~~t~G~~gfP~WFE~aCi 51 (80)
T COG3924 5 FVQAHKEARWALGLTLLYLAGWLVAAYLPGNTPGFTGFPLWFEMACI 51 (80)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHH
Confidence 3577899999765221 1111112222 34677889999995443
No 13
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=62.16 E-value=23 Score=24.27 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhH-HHHHHHHHHHHHhcC--------CCCCCCCcchhHHH
Q 039554 30 EQVERERNWDDQI-IFNGILFYVFSKILP--------GTTQLSFWRLDGVI 71 (189)
Q Consensus 30 ~~i~~e~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~p~w~~~~~~ 71 (189)
+|..||.+++..+ ++..+.-....+... .+-++|.|...+++
T Consensus 1 kqa~rEA~~tl~l~l~yf~~W~~~ay~~~~~~~~~y~~i~GlPlWF~~SCi 51 (80)
T PF06196_consen 1 KQANREARWTLGLTLIYFAWWYGFAYGLGNGDGEEYKYIFGLPLWFFYSCI 51 (80)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccCCcHHHHHHHH
Confidence 4889999997642 222222222222111 24567999886543
No 14
>PLN02434 fatty acid hydroxylase
Probab=53.02 E-value=18 Score=29.94 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=29.5
Q ss_pred HhhhhhhHHHHhHHhhcChh---hhhhhhhhccCCCCCCCcchhcccCHHhHHH
Q 039554 76 LHAGPVDFLYYWLHRALHHH---YLYSRNHSHHHSSIVTEPITSVIHPFAEHIA 126 (189)
Q Consensus 76 l~~~~~D~~~Yw~HR~~H~~---~~~w~~H~vHH~~~~p~~~t~~~hp~~E~~~ 126 (189)
+..++.|...|..|...-.. +-+|+.|..||--. .+..=+...|+-|.+.
T Consensus 172 ~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~-~~~~fGVTs~~wD~vF 224 (237)
T PLN02434 172 LGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRD-QDKGFGITSSLWDRVF 224 (237)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCC-CCCCCCcCchHHHHhc
Confidence 33346788888888753322 34788899999633 2332233445545444
No 15
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=29.49 E-value=1.8e+02 Score=21.68 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=8.4
Q ss_pred hhhhhHHHHhH
Q 039554 78 AGPVDFLYYWL 88 (189)
Q Consensus 78 ~~~~D~~~Yw~ 88 (189)
+++.|++.|+.
T Consensus 123 vlvAEv~l~~~ 133 (142)
T PF11712_consen 123 VLVAEVVLYIR 133 (142)
T ss_pred HHHHHHHHHHH
Confidence 34689999975
No 16
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=21.36 E-value=2.9e+02 Score=21.37 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=32.6
Q ss_pred ChhhhhhhhhhccCCCCCCCcchhcccCHHhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhcccccee
Q 039554 93 HHHYLYSRNHSHHHSSIVTEPITSVIHPFAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMNNMGHCNFEL 169 (189)
Q Consensus 93 H~~~~~w~~H~vHH~~~~p~~~t~~~hp~~E~~~~~~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hsg~~~ 169 (189)
.....|+..|..||+..+- -..|=.+ .......+|+++ .+..+..+.++..|.+.+-
T Consensus 68 ~~~~~~r~~H~~HH~~~~~-----~~Dpd~~--~~~~~W~~P~~~-------------~~~~~~~~~~~~eH~~~~~ 124 (175)
T cd03510 68 QSLAAYRRSHLKHHRHLGT-----EDDPDLA--LYLLLWLVPLLT-------------VFPLIGRIREIAEHAGVPA 124 (175)
T ss_pred CCHHHHHHHHHHHhCccCC-----CCCCcHH--HHHHHHHHHHHH-------------HHHHHHHHHHHHhccCCCC
Confidence 3446788889999986532 1222222 222345566543 2334566777888888654
Done!