Query 039554
Match_columns 189
No_of_seqs 169 out of 1261
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 11.7 89 0.0031 18.1 1.2 10 17-26 34-43 (44)
2 2jwa_A Receptor tyrosine-prote 10.1 76 0.0026 18.4 0.5 10 16-25 34-43 (44)
3 2ks1_B Epidermal growth factor 7.5 1.6E+02 0.0053 17.0 1.1 9 17-25 35-43 (44)
4 2l9u_A Receptor tyrosine-prote 5.9 4.3E+02 0.015 14.4 2.9 14 80-93 23-36 (40)
5 2kj1_A BM2 protein; cytoplasmi 5.3 3.5E+02 0.012 17.3 1.9 18 20-37 12-29 (89)
6 1kdx_B CREB; complex (transcri 5.2 1.2E+02 0.0041 15.8 -0.3 21 17-37 4-24 (28)
7 2ls0_1 Zoocin A endopeptidase; 4.6 2.4E+02 0.0083 20.0 0.8 16 102-117 6-21 (128)
8 2v6z_M DNA polymerase epsilon 4.5 1.7E+02 0.0058 19.9 0.0 16 101-116 4-19 (99)
9 1evs_A Oncostatin M; 4-helix b 2.5 3.4E+02 0.011 20.2 -0.1 9 87-95 172-180 (187)
10 4anr_A Soluble lytic transglyc 2.4 5.4E+02 0.018 21.2 1.1 26 101-126 4-29 (323)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.74 E-value=89 Score=18.07 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=6.0
Q ss_pred hhcCccCCCC
Q 039554 17 KGSNRIVDKA 26 (189)
Q Consensus 17 ~~~~kiq~~~ 26 (189)
.|++|+|+|+
T Consensus 34 ~RRRr~~~kr 43 (44)
T 2l2t_A 34 VRRKSIKKKR 43 (44)
T ss_dssp HHTTCSSCCC
T ss_pred hhhhhhhhcc
Confidence 5566766654
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.08 E-value=76 Score=18.39 Aligned_cols=10 Identities=0% Similarity=-0.247 Sum_probs=6.3
Q ss_pred hhhcCccCCC
Q 039554 16 AKGSNRIVDK 25 (189)
Q Consensus 16 ~~~~~kiq~~ 25 (189)
+.||+|+|++
T Consensus 34 ~~RRR~~~~k 43 (44)
T 2jwa_A 34 LIKRRQQKIR 43 (44)
T ss_dssp HHHHHCSCCC
T ss_pred heehhhhhcc
Confidence 3566777754
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.49 E-value=1.6e+02 Score=16.97 Aligned_cols=9 Identities=33% Similarity=0.320 Sum_probs=4.8
Q ss_pred hhcCccCCC
Q 039554 17 KGSNRIVDK 25 (189)
Q Consensus 17 ~~~~kiq~~ 25 (189)
.|++|+|+|
T Consensus 35 ~RRr~~~~k 43 (44)
T 2ks1_B 35 MRRRHIVRK 43 (44)
T ss_dssp HHTTTCCSC
T ss_pred hhhhHhhcc
Confidence 455566554
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=5.92 E-value=4.3e+02 Score=14.40 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=9.3
Q ss_pred hhhHHHHhHHhhcC
Q 039554 80 PVDFLYYWLHRALH 93 (189)
Q Consensus 80 ~~D~~~Yw~HR~~H 93 (189)
....+.||--|--|
T Consensus 23 lg~tflywrgrrhh 36 (40)
T 2l9u_A 23 LGGTFLYWRGRRHH 36 (40)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hCceeEEEcccccc
Confidence 45777888766544
No 5
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=5.33 E-value=3.5e+02 Score=17.32 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=10.6
Q ss_pred CccCCCCCCHHHHHHHHH
Q 039554 20 NRIVDKAIEFEQVERERN 37 (189)
Q Consensus 20 ~kiq~~~~~~~~i~~e~~ 37 (189)
-||+-+.|.++.+-||..
T Consensus 12 lki~ir~pnke~inrevs 29 (89)
T 2kj1_A 12 MKIRIKGPNKETINREVS 29 (89)
T ss_dssp ------CCCHHHHHHHHH
T ss_pred eEEEecCCCHHHHhHHHH
Confidence 478888999999999875
No 6
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=5.15 E-value=1.2e+02 Score=15.80 Aligned_cols=21 Identities=5% Similarity=0.254 Sum_probs=14.3
Q ss_pred hhcCccCCCCCCHHHHHHHHH
Q 039554 17 KGSNRIVDKAIEFEQVERERN 37 (189)
Q Consensus 17 ~~~~kiq~~~~~~~~i~~e~~ 37 (189)
.+++.|..++|+..++..|+.
T Consensus 4 ~krr~iL~rrpSYrkIlndls 24 (28)
T 1kdx_B 4 QKRREILSRRPSYRKILNDLS 24 (28)
T ss_dssp HHHHHHHTTSTHHHHHHHHHH
T ss_pred hhhhhhhhcCchHHHHHHhhc
Confidence 355677777887777766654
No 7
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=4.57 E-value=2.4e+02 Score=19.95 Aligned_cols=16 Identities=50% Similarity=0.760 Sum_probs=10.9
Q ss_pred hhccCCCCCCCcchhc
Q 039554 102 HSHHHSSIVTEPITSV 117 (189)
Q Consensus 102 H~vHH~~~~p~~~t~~ 117 (189)
|.-||.++..+|+++.
T Consensus 6 ~~~~~~~~~~~~~t~~ 21 (128)
T 2ls0_1 6 HHHHHGSEPTTPTTNL 21 (128)
T ss_dssp CCCCCCSCCCCCSCCC
T ss_pred cccccCCCCCCccccc
Confidence 4556777777787774
No 8
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=4.54 E-value=1.7e+02 Score=19.90 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=0.0
Q ss_pred hhhccCCCCCCCcchh
Q 039554 101 NHSHHHSSIVTEPITS 116 (189)
Q Consensus 101 ~H~vHH~~~~p~~~t~ 116 (189)
-|--||.+..|+..++
T Consensus 4 ~~~~~~~~~~~~~~~~ 19 (99)
T 2v6z_M 4 SHHHHHHSQDPNSSSA 19 (99)
T ss_dssp ----------------
T ss_pred ccccccccCCCCccch
Confidence 4667888899988777
No 9
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.1
Probab=2.48 E-value=3.4e+02 Score=20.20 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=7.1
Q ss_pred hHHhhcChh
Q 039554 87 WLHRALHHH 95 (189)
Q Consensus 87 w~HR~~H~~ 95 (189)
=+||+||..
T Consensus 172 GYHRfM~Sv 180 (187)
T 1evs_A 172 GYHRFMHSV 180 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 379999973
No 10
>4anr_A Soluble lytic transglycosylase B; lyase, EF-hand like motif, peptidoglycan; 1.84A {Pseudomonas aeruginosa}
Probab=2.44 E-value=5.4e+02 Score=21.17 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=3.9
Q ss_pred hhhccCCCCCCCcchhcccCHHhHHH
Q 039554 101 NHSHHHSSIVTEPITSVIHPFAEHIA 126 (189)
Q Consensus 101 ~H~vHH~~~~p~~~t~~~hp~~E~~~ 126 (189)
-|-.||.+..|+...-..+|=.+.++
T Consensus 4 ~~~~~~~~~~~~~~~y~~~~~~~~fi 29 (323)
T 4anr_A 4 SHHHHHHSQDPNSLVPRGSPQVAEFV 29 (323)
T ss_dssp -------------------CHHHHHH
T ss_pred ccccccccCCCcccccccCHHHHHHH
Confidence 46778888999988776666545555
Done!