Query 039554
Match_columns 189
No_of_seqs 169 out of 1261
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 18:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039554.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039554hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2epra1 g.37.1.1 (A:350-384) P 3.2 2.5E+02 0.019 13.7 1.3 11 102-112 24-34 (35)
2 d1y0jb1 g.37.1.2 (B:1-36) U-sh 3.0 65 0.0047 16.1 -1.2 6 85-90 30-35 (36)
3 d1kf6d_ f.21.2.2 (D:) Fumarate 2.7 1.6E+02 0.011 19.1 0.1 12 96-107 75-86 (119)
4 d2oara1 f.16.1.1 (A:10-118) Ga 2.4 1.7E+02 0.013 18.4 0.0 12 26-37 98-109 (109)
5 d1uh6a_ d.15.1.1 (A:) Ubiquiti 2.2 2.8E+02 0.021 16.7 0.9 10 101-110 6-15 (100)
6 d1vk6a4 g.41.14.1 (A:97-125) N 2.1 2.2E+02 0.016 13.5 0.2 9 102-110 7-15 (29)
7 d1evsa_ a.26.1.1 (A:) Oncostat 1.7 2.5E+02 0.018 19.0 -0.1 8 87-94 169-176 (184)
8 d1w98b1 a.74.1.1 (B:228-357) G 1.4 7.4E+02 0.054 15.8 2.0 14 25-38 75-88 (130)
9 d1cr5a2 d.31.1.1 (A:108-210) C 1.4 6.2E+02 0.045 15.2 1.4 22 17-38 17-38 (103)
10 d1jvra_ a.61.1.2 (A:) HTLV-II 1.4 7.7E+02 0.056 15.7 1.9 31 7-40 25-55 (137)
No 1
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.20 E-value=2.5e+02 Score=13.70 Aligned_cols=11 Identities=27% Similarity=0.172 Sum_probs=5.7
Q ss_pred hhccCCCCCCC
Q 039554 102 HSHHHSSIVTE 112 (189)
Q Consensus 102 H~vHH~~~~p~ 112 (189)
|+.-|+.+.|.
T Consensus 24 hklshs~ekpy 34 (35)
T d2epra1 24 HKLSHSGEKPY 34 (35)
T ss_dssp HGGGSCSCCCC
T ss_pred hhcccCCCCCC
Confidence 55555555543
No 2
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.02 E-value=65 Score=16.08 Aligned_cols=6 Identities=67% Similarity=1.287 Sum_probs=3.6
Q ss_pred HHhHHh
Q 039554 85 YYWLHR 90 (189)
Q Consensus 85 ~Yw~HR 90 (189)
||..||
T Consensus 30 yycshr 35 (36)
T d1y0jb1 30 YYCSHR 35 (36)
T ss_dssp TTTCSC
T ss_pred eeeecc
Confidence 566665
No 3
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=2.72 E-value=1.6e+02 Score=19.09 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=7.0
Q ss_pred hhhhhhhhccCC
Q 039554 96 YLYSRNHSHHHS 107 (189)
Q Consensus 96 ~~~w~~H~vHH~ 107 (189)
+++...|++||.
T Consensus 75 plWh~~HRihHg 86 (119)
T d1kf6d_ 75 PLWCGLHRMHHA 86 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444556777764
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.40 E-value=1.7e+02 Score=18.37 Aligned_cols=12 Identities=8% Similarity=-0.249 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHH
Q 039554 26 AIEFEQVERERN 37 (189)
Q Consensus 26 ~~~~~~i~~e~~ 37 (189)
++++.++.+|||
T Consensus 98 ~p~e~~LL~EIR 109 (109)
T d2oara1 98 GDTQVVLLTEIR 109 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCcHHHHHHhhC
Confidence 344446666765
No 5
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.24 E-value=2.8e+02 Score=16.74 Aligned_cols=10 Identities=60% Similarity=0.833 Sum_probs=7.2
Q ss_pred hhhccCCCCC
Q 039554 101 NHSHHHSSIV 110 (189)
Q Consensus 101 ~H~vHH~~~~ 110 (189)
-|..||++..
T Consensus 6 ~~~~~~ss~~ 15 (100)
T d1uh6a_ 6 HHHHHHSSGA 15 (100)
T ss_dssp CCCCCCCCCC
T ss_pred ccccccCCcc
Confidence 3777888875
No 6
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=2.15 E-value=2.2e+02 Score=13.51 Aligned_cols=9 Identities=22% Similarity=0.054 Sum_probs=5.7
Q ss_pred hhccCCCCC
Q 039554 102 HSHHHSSIV 110 (189)
Q Consensus 102 H~vHH~~~~ 110 (189)
|.+|+|-++
T Consensus 7 h~Mh~s~tE 15 (29)
T d1vk6a4 7 HEMYPSKTE 15 (29)
T ss_dssp CBEEECSSS
T ss_pred CccccchhH
Confidence 667776554
No 7
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.66 E-value=2.5e+02 Score=19.03 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=6.5
Q ss_pred hHHhhcCh
Q 039554 87 WLHRALHH 94 (189)
Q Consensus 87 w~HR~~H~ 94 (189)
=+||+||.
T Consensus 169 GyHrfM~S 176 (184)
T d1evsa_ 169 GYHRFMHS 176 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 37999997
No 8
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.44 E-value=7.4e+02 Score=15.76 Aligned_cols=14 Identities=14% Similarity=0.480 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHh
Q 039554 25 KAIEFEQVERERNW 38 (189)
Q Consensus 25 ~~~~~~~i~~e~~~ 38 (189)
-+.+++++..|++|
T Consensus 75 SGl~w~~l~~Cv~W 88 (130)
T d1w98b1 75 SGYQWCDIENCVKW 88 (130)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred cCccHHHHHHHHHH
Confidence 46899999999999
No 9
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=1.38 E-value=6.2e+02 Score=15.24 Aligned_cols=22 Identities=5% Similarity=0.216 Sum_probs=12.2
Q ss_pred hhcCccCCCCCCHHHHHHHHHh
Q 039554 17 KGSNRIVDKAIEFEQVERERNW 38 (189)
Q Consensus 17 ~~~~kiq~~~~~~~~i~~e~~~ 38 (189)
.+|-|..+.+.+.+++.+|+..
T Consensus 17 ~~kkk~~~~p~D~Dela~~F~~ 38 (103)
T d1cr5a2 17 RARGKAVSTVFDQDELAKQFVR 38 (103)
T ss_dssp CC-------CCCHHHHHHHHHH
T ss_pred hhcCCCCCCcccHHHHHHHHHH
Confidence 4454566788999999999864
No 10
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=1.35 E-value=7.7e+02 Score=15.74 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred ehhccCcchhhhcCccCCCCCCHHHHHHHHHhhh
Q 039554 7 WINLSRYRTAKGSNRIVDKAIEFEQVERERNWDD 40 (189)
Q Consensus 7 ~~~~~~~~~~~~~~kiq~~~~~~~~i~~e~~~~~ 40 (189)
|.+|-. ...|-.-.+...+..|++|=+|+..
T Consensus 25 WLNfLQ---aAyRLqPgPS~~DF~qLr~flklal 55 (137)
T d1jvra_ 25 WLNFLQ---AAYRLQPGPSDFDFQQLRRFLKLAL 55 (137)
T ss_dssp HHHHHH---HHHHSSCCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHH---HHHhcCCCCCcccHHHHHHHHHHHH
Done!