BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039555
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 38  RKSLVICCNGFTVIDSHGNLVYRVDNYVGSCHE-LILMDGSGKSIFTMRRRKKLTVADSW 96
           RK   +    F + D +GNL+++V   V   H+  +L+DGSG  + T+R  K ++  D W
Sbjct: 44  RKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLRE-KXVSXHDRW 102

Query: 97  RVFEGEVDECSRRKKLSKRPVCYVKKHMMSINSNVLAYVYYGGASSNKRYAYTVEGSYAN 156
           +VF G            +R + Y  K    +       V+ G     KR  + V+GS+  
Sbjct: 103 QVFRG--------GSTDQRDLLYTVKRSSXLQLKTKLDVFLGHNKDEKRCDFRVKGSWLE 154

Query: 157 RSCKVL-DESRRVVAEIKRKKAAIGGVSFGVEVFLLIVHPSFDAAFAMALVLLLDQM 212
           RSC V   ES  +VA+  RK   +  V  G + F + V+P+ D AF  +LV++LD +
Sbjct: 155 RSCVVYAGESDAIVAQXHRKH-TVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDV 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,923,506
Number of Sequences: 62578
Number of extensions: 228111
Number of successful extensions: 489
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 3
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)