Query 039555
Match_columns 214
No_of_seqs 108 out of 458
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 2.1E-42 4.6E-47 285.8 18.4 173 23-208 7-187 (187)
2 COG4894 Uncharacterized conser 100.0 2.8E-34 6.1E-39 224.5 8.9 152 32-214 6-158 (159)
3 PF03803 Scramblase: Scramblas 99.6 2.1E-13 4.5E-18 115.1 20.1 163 33-213 23-218 (221)
4 COG4894 Uncharacterized conser 98.1 5.4E-06 1.2E-10 65.7 5.0 69 28-99 26-95 (159)
5 PF04525 Tub_2: Tubby C 2; In 97.7 0.00015 3.3E-09 59.7 7.9 73 27-101 34-113 (187)
6 KOG0621 Phospholipid scramblas 97.7 0.0014 2.9E-08 58.1 13.5 181 22-213 71-278 (292)
7 PF03803 Scramblase: Scramblas 96.6 0.022 4.7E-07 47.9 10.0 99 28-138 50-165 (221)
8 PF13860 FlgD_ig: FlgD Ig-like 58.6 25 0.00055 24.6 4.7 15 48-62 29-43 (81)
9 PF02974 Inh: Protease inhibit 54.7 65 0.0014 23.7 6.5 31 68-102 61-91 (99)
10 PRK12816 flgG flagellar basal 54.4 18 0.00038 31.6 3.9 43 41-83 95-138 (264)
11 PF04790 Sarcoglycan_1: Sarcog 54.3 30 0.00065 30.3 5.3 48 32-79 103-154 (264)
12 KOG0621 Phospholipid scramblas 52.8 73 0.0016 28.4 7.6 48 45-93 187-241 (292)
13 PF15529 Toxin_49: Putative to 50.4 28 0.0006 25.6 3.8 27 36-64 22-48 (89)
14 PRK12691 flgG flagellar basal 48.7 31 0.00068 29.8 4.6 42 42-83 96-138 (262)
15 PF01167 Tub: Tub family; Int 48.2 1.5E+02 0.0032 25.6 8.6 76 78-164 6-87 (246)
16 cd06166 Sortase_D_5 Sortase D 47.4 42 0.0009 25.6 4.6 19 45-63 68-86 (126)
17 KOG3950 Gamma/delta sarcoglyca 46.8 19 0.00042 31.4 2.9 10 187-196 261-270 (292)
18 PRK12694 flgG flagellar basal 46.3 25 0.00054 30.5 3.6 42 42-83 96-138 (260)
19 TIGR02488 flgG_G_neg flagellar 45.7 25 0.00055 30.4 3.5 42 42-83 94-136 (259)
20 cd05828 Sortase_D_4 Sortase D 44.9 44 0.00096 25.4 4.5 21 66-86 63-83 (127)
21 TIGR03784 marine_sortase sorta 44.1 51 0.0011 27.0 4.9 21 66-86 110-131 (174)
22 PF07680 DoxA: TQO small subun 41.5 23 0.0005 27.9 2.4 35 59-94 36-73 (133)
23 PRK12693 flgG flagellar basal 41.4 38 0.00083 29.2 4.0 42 42-83 96-138 (261)
24 COG4998 Predicted endonuclease 40.2 50 0.0011 27.2 4.1 35 156-197 22-56 (209)
25 PRK00122 rimM 16S rRNA-process 39.2 91 0.002 25.1 5.7 27 73-99 110-136 (172)
26 COG5436 Predicted integral mem 38.9 71 0.0015 26.1 4.8 40 46-86 68-108 (182)
27 TIGR02150 IPP_isom_1 isopenten 37.5 54 0.0012 25.8 4.0 52 48-99 1-60 (158)
28 TIGR02273 16S_RimM 16S rRNA pr 36.5 84 0.0018 25.1 5.0 29 72-100 104-132 (165)
29 smart00634 BID_1 Bacterial Ig- 36.0 91 0.002 22.1 4.7 14 73-86 57-70 (92)
30 PF06788 UPF0257: Uncharacteri 35.9 87 0.0019 27.1 5.2 38 49-86 52-92 (236)
31 PRK06655 flgD flagellar basal 35.4 57 0.0012 27.8 4.1 34 48-81 130-167 (225)
32 PRK15393 NUDIX hydrolase YfcD; 35.0 85 0.0019 25.3 4.9 56 46-102 10-73 (180)
33 PRK14591 rimM 16S rRNA-process 34.4 1.1E+02 0.0024 24.6 5.5 27 73-99 110-136 (169)
34 PF12396 DUF3659: Protein of u 33.7 92 0.002 21.3 4.1 38 49-86 14-58 (64)
35 PRK13828 rimM 16S rRNA-process 32.0 1.3E+02 0.0028 24.1 5.4 27 73-99 90-116 (161)
36 PRK12640 flgF flagellar basal 30.0 45 0.00098 28.8 2.6 41 43-83 82-123 (246)
37 PRK12817 flgG flagellar basal 29.7 56 0.0012 28.3 3.1 41 43-83 93-134 (260)
38 cd03676 Nudix_hydrolase_3 Memb 29.5 1.6E+02 0.0034 23.5 5.6 58 45-102 4-72 (180)
39 PRK14592 rimM 16S rRNA-process 28.7 1.5E+02 0.0033 23.7 5.4 27 73-99 102-128 (165)
40 PRK12819 flgG flagellar basal 28.4 78 0.0017 27.4 3.8 38 46-83 99-136 (257)
41 PRK12818 flgG flagellar basal 28.2 61 0.0013 28.1 3.1 41 43-83 97-138 (256)
42 PF12690 BsuPI: Intracellular 28.1 43 0.00093 23.8 1.8 15 47-61 27-41 (82)
43 PRK12813 flgD flagellar basal 27.4 64 0.0014 27.6 3.0 18 69-86 126-143 (223)
44 PF05593 RHS_repeat: RHS Repea 27.1 1.2E+02 0.0025 18.0 3.4 29 51-81 1-29 (38)
45 cd02885 IPP_Isomerase Isopente 26.8 84 0.0018 24.8 3.5 52 48-99 4-63 (165)
46 cd00004 Sortase Sortases are c 26.6 1.5E+02 0.0031 22.3 4.7 21 66-86 66-86 (128)
47 PF09008 Head_binding: Head bi 26.6 1.1E+02 0.0024 23.3 3.8 44 38-86 62-105 (114)
48 cd05830 Sortase_D_5 Sortase D 26.5 1.4E+02 0.003 23.0 4.6 21 66-86 67-87 (137)
49 COG4787 FlgF Flagellar basal b 25.4 69 0.0015 27.6 2.8 52 30-82 69-121 (251)
50 PRK12634 flgD flagellar basal 25.3 1.2E+02 0.0025 25.9 4.2 19 68-86 123-141 (221)
51 PRK14590 rimM 16S rRNA-process 24.9 2.1E+02 0.0046 23.1 5.5 12 75-86 109-121 (171)
52 PRK12633 flgD flagellar basal 24.9 1E+02 0.0022 26.4 3.8 18 68-85 130-147 (230)
53 cd06165 Sortase_A_1 Sortase A 24.1 1.6E+02 0.0034 22.2 4.5 21 66-86 65-85 (127)
54 PF11141 DUF2914: Protein of u 23.8 1.2E+02 0.0025 20.7 3.2 21 66-86 43-63 (66)
55 PF06903 VirK: VirK protein; 23.3 3.2E+02 0.007 20.4 6.6 34 30-64 45-79 (100)
56 PF11906 DUF3426: Protein of u 22.9 1.8E+02 0.0038 22.5 4.6 30 54-83 65-103 (149)
57 PLN02552 isopentenyl-diphospha 22.4 2.2E+02 0.0047 24.7 5.4 58 45-102 22-92 (247)
58 PF08269 Cache_2: Cache domain 22.0 16 0.00034 26.2 -1.5 42 41-82 51-94 (95)
59 PF13511 DUF4124: Domain of un 20.8 78 0.0017 20.5 1.9 17 46-62 14-30 (60)
60 PF11191 DUF2782: Protein of u 20.7 1.4E+02 0.003 22.1 3.4 34 66-100 68-104 (105)
61 PF01167 Tub: Tub family; Int 20.6 3.4E+02 0.0074 23.3 6.3 42 157-207 199-242 (246)
62 PHA00458 single-stranded DNA-b 20.0 1E+02 0.0022 26.5 2.8 33 50-82 98-139 (233)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=2.1e-42 Score=285.84 Aligned_cols=173 Identities=32% Similarity=0.501 Sum_probs=105.4
Q ss_pred ccCCCCCceEEEEEEEEeeeEeCCCEEEEeCCCCEEEEEEe-ec-CCCCeEEEEcCCCCeEEEEEeeecccccceeEEEe
Q 039555 23 KKNIDEGECTSLTVWRKSLVICCNGFTVIDSHGNLVYRVDN-YV-GSCHELILMDGSGKSIFTMRRRKKLTVADSWRVFE 100 (214)
Q Consensus 23 ~~~~~~~~~~~l~V~~k~~~~sg~~f~V~D~~G~~vf~V~g-~~-s~~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~~ 100 (214)
+|| +.+|++|+||+|.+++++++|+|+|++|+++|+|+| +. ++++++.|+|++|+||++|++ |.++++++|++|+
T Consensus 7 ~~~--~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~-k~~~l~~~w~i~~ 83 (187)
T PF04525_consen 7 QYC--SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRR-KLFSLRPTWEIYR 83 (187)
T ss_dssp GGB---SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE---------EEEEEE
T ss_pred HHc--CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEe-eecccceEEEEEE
Confidence 678 899999999999999999999999999999999999 77 999999999999999999999 9999999999999
Q ss_pred CCcchhhhcccCCCCceEEEEeeecc-CCccEEEEEEeccC-----CCCCceeEEEEeeeCCccEEEEeCCCcEEEEEEe
Q 039555 101 GEVDECSRRKKLSKRPVCYVKKHMMS-INSNVLAYVYYGGA-----SSNKRYAYTVEGSYANRSCKVLDESRRVVAEIKR 174 (214)
Q Consensus 101 g~~~~~~~~~~~~~~~lf~vkk~~~~-~k~~~~~~V~~~~~-----~~~~~~~~~v~G~~~~~~~~I~~~~g~~VAeV~r 174 (214)
+++. +..+++|+||+++.+ .++ .+.+|+... ..++.++|+|+|||++++|+|++.+|++||||+|
T Consensus 84 ~~~~-------~~~~~i~tvkk~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~r 154 (187)
T PF04525_consen 84 GGGS-------EGKKPIFTVKKKSMLQNKD--SFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISR 154 (187)
T ss_dssp TT----------GGGEEEEEE------------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE
T ss_pred CCCC-------ccCceEEEEEEecccCCCc--ceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEec
Confidence 8843 224689999999766 566 678887632 2356789999999999999999766999999999
Q ss_pred eeeccCCeeeeeceEEEEEeCCCCHHHHHHHHHH
Q 039555 175 KKAAIGGVSFGVEVFLLIVHPSFDAAFAMALVLL 208 (214)
Q Consensus 175 k~~~~~~~~~g~dtY~l~V~pgvD~ali~alvv~ 208 (214)
++. .+.++.|+|+|.|+|+||+|++|++|||||
T Consensus 155 k~~-~k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 155 KYS-SKKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp -----------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred ccc-eeeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 887 457788999999999999999999999987
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=224.48 Aligned_cols=152 Identities=22% Similarity=0.361 Sum_probs=138.1
Q ss_pred EEEEEEEEeeeEeCCCEEEEeCCCCEEEEEEeec-CCCCeEEEEcCCCCeEEEEEeeecccccceeEEEeCCcchhhhcc
Q 039555 32 TSLTVWRKSLVICCNGFTVIDSHGNLVYRVDNYV-GSCHELILMDGSGKSIFTMRRRKKLTVADSWRVFEGEVDECSRRK 110 (214)
Q Consensus 32 ~~l~V~~k~~~~sg~~f~V~D~~G~~vf~V~g~~-s~~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~~g~~~~~~~~~ 110 (214)
.+|.|+||..++ |++|.|+|.+|+.+|+|+|++ ++++.+++.|++|.+|.+|++ |+++++|+|++-.|+
T Consensus 6 ~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~-kll~l~~~yeI~d~~-------- 75 (159)
T COG4894 6 ITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQ-KLLSLLPRYEISDGG-------- 75 (159)
T ss_pred HhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHH-HHhhccceeEEEcCC--------
Confidence 477888886555 899999999999999999998 999999999999999999999 999999999999987
Q ss_pred cCCCCceEEEEeeeccCCccEEEEEEeccCCCCCceeEEEEeeeCCccEEEEeCCCcEEEEEEeeeeccCCeeeeeceEE
Q 039555 111 KLSKRPVCYVKKHMMSINSNVLAYVYYGGASSNKRYAYTVEGSYANRSCKVLDESRRVVAEIKRKKAAIGGVSFGVEVFL 190 (214)
Q Consensus 111 ~~~~~~lf~vkk~~~~~k~~~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~g~~VAeV~rk~~~~~~~~~g~dtY~ 190 (214)
...|.++|+.+++++ ++.+. +.+++++||+|+.+|++.++ +.++|+|+|||.. |+|||.
T Consensus 76 ----g~~~~vrKK~tf~Rd--k~e~d--------~~~~eihGNi~d~efkl~dg-~~~~aeVsKkwf~------~rdTY~ 134 (159)
T COG4894 76 ----GTVCEVRKKVTFSRD--KFEID--------GLNWEIHGNIWDDEFKLTDG-ENVRAEVSKKWFS------WRDTYH 134 (159)
T ss_pred ----CCEEEEEEEEEEEee--eEEEc--------CCCeEEecceeceEEEEecC-CceehhheeeeEe------ccceEE
Confidence 349999999999888 55543 24499999999999999998 6699999999976 899999
Q ss_pred EEEeCCCCHHHHHHHHHHhccccC
Q 039555 191 LIVHPSFDAAFAMALVLLLDQMFS 214 (214)
Q Consensus 191 l~V~pgvD~ali~alvv~lD~i~~ 214 (214)
|+|+|+.|.++|+++|||||+|.+
T Consensus 135 l~vapde~a~lii~i~VaLD~v~~ 158 (159)
T COG4894 135 LQVAPDEDALLIIAIAVALDMVLY 158 (159)
T ss_pred EEEcCchhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999865
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.60 E-value=2.1e-13 Score=115.06 Aligned_cols=163 Identities=13% Similarity=0.238 Sum_probs=126.1
Q ss_pred EEEEEEEeeeE-------eCCCEEEEeCCCCEEEEEEeec----------CCCCeEEEEcCCCCeEEEEEeeecccc---
Q 039555 33 SLTVWRKSLVI-------CCNGFTVIDSHGNLVYRVDNYV----------GSCHELILMDGSGKSIFTMRRRKKLTV--- 92 (214)
Q Consensus 33 ~l~V~~k~~~~-------sg~~f~V~D~~G~~vf~V~g~~----------s~~~~~~l~D~~G~~L~~ir~~k~ls~--- 92 (214)
.+.|+|+...+ ..+.|.|+|.+|+.+|.+.-.. ..+-+..++|+.|++++++++ ..-..
T Consensus 23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~R-p~~c~~C~ 101 (221)
T PF03803_consen 23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIER-PFKCCSCC 101 (221)
T ss_pred EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEc-CCcceecc
Confidence 56676765432 2579999999999999886532 124467899999999999999 54322
Q ss_pred ---cceeEEEeCCcchhhhcccCCCCceEEEEeeeccCCccEEEEEEeccCCCCCceeEEEEee------eCCccEEEEe
Q 039555 93 ---ADSWRVFEGEVDECSRRKKLSKRPVCYVKKHMMSINSNVLAYVYYGGASSNKRYAYTVEGS------YANRSCKVLD 163 (214)
Q Consensus 93 ---~~~w~v~~g~~~~~~~~~~~~~~~lf~vkk~~~~~k~~~~~~V~~~~~~~~~~~~~~v~G~------~~~~~~~I~~ 163 (214)
..+.+|+.+. +.++.+|+++++++++ +++|+-++ +..-+.|+|. +.+..|.|++
T Consensus 102 ~~~~~~~~V~~p~-----------g~~iG~I~q~~~~~~~--~f~I~d~~----~~~~~~I~gp~~~~~~~~~~~F~I~~ 164 (221)
T PF03803_consen 102 PCCLQEMEVESPP-----------GNLIGSIRQPFSCCRP--NFDIFDAN----GNPIFTIKGPCCCCSCCCDWEFEIKD 164 (221)
T ss_pred cccceeEEEecCC-----------CcEEEEEEEcCcccce--EEEEEECC----CceEEEEeCCcceeccccceeeeeec
Confidence 2566666654 5899999999998888 77888642 3567899987 4577899999
Q ss_pred CCCcEEEEEEeeeeccCC-eeeeeceEEEEEeCCCCH---HHHHHHHHHhcccc
Q 039555 164 ESRRVVAEIKRKKAAIGG-VSFGVEVFLLIVHPSFDA---AFAMALVLLLDQMF 213 (214)
Q Consensus 164 ~~g~~VAeV~rk~~~~~~-~~~g~dtY~l~V~pgvD~---ali~alvv~lD~i~ 213 (214)
.+|+.||+|+|+|..... .+-..|.|.|+..+..|. |+++|.++.+|.++
T Consensus 165 ~~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~ 218 (221)
T PF03803_consen 165 PNGQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY 218 (221)
T ss_pred ccCcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence 778999999999865422 344689999999988875 69999999999886
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=5.4e-06 Score=65.71 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=60.8
Q ss_pred CCceEEEEEEEEeeeEeCCCEEEEeCCCCEEEEEEeec-CCCCeEEEEcCCCCeEEEEEeeecccccceeEEE
Q 039555 28 EGECTSLTVWRKSLVICCNGFTVIDSHGNLVYRVDNYV-GSCHELILMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 28 ~~~~~~l~V~~k~~~~sg~~f~V~D~~G~~vf~V~g~~-s~~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
...++++.|.=+.++. |+.|+|+|+.|.+++.++.+. ++..+..+.|++|+ ++.+|+ |..-++++|++-
T Consensus 26 ~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrK-K~tf~Rdk~e~d 95 (159)
T COG4894 26 RDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRK-KVTFSRDKFEID 95 (159)
T ss_pred CCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEE-EEEEEeeeEEEc
Confidence 6778999998766666 888999999999999999998 99999999999999 899999 877668888764
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.72 E-value=0.00015 Score=59.70 Aligned_cols=73 Identities=27% Similarity=0.375 Sum_probs=43.2
Q ss_pred CCCceEEEEEEE-EeeeEeCCCEEEEeCCCCEEEEEEeec-CCCCeEEEEcCCCC----eEEEEEeee-cccccceeEEE
Q 039555 27 DEGECTSLTVWR-KSLVICCNGFTVIDSHGNLVYRVDNYV-GSCHELILMDGSGK----SIFTMRRRK-KLTVADSWRVF 99 (214)
Q Consensus 27 ~~~~~~~l~V~~-k~~~~sg~~f~V~D~~G~~vf~V~g~~-s~~~~~~l~D~~G~----~L~~ir~~k-~ls~~~~w~v~ 99 (214)
|+.....|+|.. +.+++ ++...++|.+|+++++++.+. ++..+..+.++++. ++++|++ + .+..++.-.+|
T Consensus 34 D~~G~~vf~V~g~~~~s~-~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk-~~~~~~~~~~~~f 111 (187)
T PF04525_consen 34 DENGNVVFRVDGGKFFSI-GKKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKK-KSMLQNKDSFDVF 111 (187)
T ss_dssp ETTS-EEEEEE--SCTTB-TTEEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE-----------EEEE
T ss_pred cCCCCEEEEEEEecccCC-CCEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEE-ecccCCCcceeEE
Confidence 366778999988 55555 789999999999999999986 99999999999998 5999999 6 44555566666
Q ss_pred eC
Q 039555 100 EG 101 (214)
Q Consensus 100 ~g 101 (214)
.+
T Consensus 112 ~~ 113 (187)
T PF04525_consen 112 LP 113 (187)
T ss_dssp ET
T ss_pred Ee
Confidence 65
No 6
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=97.67 E-value=0.0014 Score=58.12 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=109.4
Q ss_pred cccCCCCCceEEEEEEEEeeeE----eCCCEEEEeCCCCEEEEEEe-ec---------CCCCeEEEEcCCCCeEEEEEee
Q 039555 22 IKKNIDEGECTSLTVWRKSLVI----CCNGFTVIDSHGNLVYRVDN-YV---------GSCHELILMDGSGKSIFTMRRR 87 (214)
Q Consensus 22 ~~~~~~~~~~~~l~V~~k~~~~----sg~~f~V~D~~G~~vf~V~g-~~---------s~~~~~~l~D~~G~~L~~ir~~ 87 (214)
+.|-...+........+....+ +.+.|.|.|.+|+.+|.+-- +. ..+-...++|.-|++++++++
T Consensus 71 l~~L~~~~~~~V~q~~E~~ei~tG~et~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R- 149 (292)
T KOG0621|consen 71 LEYLAHLDSLMVVQQIEPLEIFTGFETANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKR- 149 (292)
T ss_pred hheeecCCceEEEEeeeehhhhccCccCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEec-
Confidence 3344344455555555555333 26899999999999885522 11 345577899999999999999
Q ss_pred ecccccceeEEEeCCcc-hhhhcccCCCCceEEEEeeeccCCccEEEEEEeccCCCCCceeEEEEee-------eCCccE
Q 039555 88 KKLTVADSWRVFEGEVD-ECSRRKKLSKRPVCYVKKHMMSINSNVLAYVYYGGASSNKRYAYTVEGS-------YANRSC 159 (214)
Q Consensus 88 k~ls~~~~w~v~~g~~~-~~~~~~~~~~~~lf~vkk~~~~~k~~~~~~V~~~~~~~~~~~~~~v~G~-------~~~~~~ 159 (214)
....... .+.+-.. +-.+ +.-....+-+|.+...+..+ +++|.-. ....-+.|+|- +-+..+
T Consensus 150 ~~~c~~~---~c~~~~~~~~~v-~~p~~~~lG~v~q~~~~~~~--~f~i~~~----~~~~v~~v~gp~~~~~~~~~d~~f 219 (292)
T KOG0621|consen 150 PFPCCSS---ACALCLAQEIEI-QSPPMGLLGKVLQTWGCVNP--NFHLWDR----DGNLVFLVEGPRCCTFACCDDTVF 219 (292)
T ss_pred ccccccc---ccccccccEEEE-EcCCCceEEEEEEeeccccc--eEEEEcc----cceeEEEEEcCceeEEEeecCcce
Confidence 7543332 1111100 0000 00113455556655555566 5555532 22344667666 344444
Q ss_pred EE-EeCCCcEEEEEEeeeeccC-CeeeeeceEEEEEeCCCCH---HHHHHHHHHhcccc
Q 039555 160 KV-LDESRRVVAEIKRKKAAIG-GVSFGVEVFLLIVHPSFDA---AFAMALVLLLDQMF 213 (214)
Q Consensus 160 ~I-~~~~g~~VAeV~rk~~~~~-~~~~g~dtY~l~V~pgvD~---ali~alvv~lD~i~ 213 (214)
.| ...+|+.|++|.|+|.... +.+-+.|+|.|.-.-..|. ++++|.++-||.++
T Consensus 220 ~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f~v~FPldLdvk~kavllga~flID~~~ 278 (292)
T KOG0621|consen 220 FPKTTDNGRIVGSISRKWAGLVREAFTDADTFVVHFPLDLDVKLKALLLGSTFLIDYMS 278 (292)
T ss_pred eEEEcCCCeEEEEEeecccchhhhheeccceeeEecCCcCCHHHHhhhhhheeeEEEEE
Confidence 44 4456899999999997753 4455678888888767764 68888888888664
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.63 E-value=0.022 Score=47.89 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCceEEEEEEEEeeeEe------CCC--EEEEeCCCCEEEEEEeecC-------CCCeEEEEcCCCCeEEEEEeeecccc
Q 039555 28 EGECTSLTVWRKSLVIC------CNG--FTVIDSHGNLVYRVDNYVG-------SCHELILMDGSGKSIFTMRRRKKLTV 92 (214)
Q Consensus 28 ~~~~~~l~V~~k~~~~s------g~~--f~V~D~~G~~vf~V~g~~s-------~~~~~~l~D~~G~~L~~ir~~k~ls~ 92 (214)
+..+..+.+.+.+-.+. ... ..|+|.+|+.+++++-..+ ...+..+.++.|++|-+|++ +.-.+
T Consensus 50 ~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q-~~~~~ 128 (221)
T PF03803_consen 50 PNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQ-PFSCC 128 (221)
T ss_pred CCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEE-cCccc
Confidence 45556666666642221 123 4689999999999998762 23677888999999999999 76667
Q ss_pred cceeEEEeCCcchhhhcccCCCCceEEEEeeeccC--CccEEEEEEec
Q 039555 93 ADSWRVFEGEVDECSRRKKLSKRPVCYVKKHMMSI--NSNVLAYVYYG 138 (214)
Q Consensus 93 ~~~w~v~~g~~~~~~~~~~~~~~~lf~vkk~~~~~--k~~~~~~V~~~ 138 (214)
.++++|+..+ ++++++|+.+.... -..+.+.|...
T Consensus 129 ~~~f~I~d~~-----------~~~~~~I~gp~~~~~~~~~~~F~I~~~ 165 (221)
T PF03803_consen 129 RPNFDIFDAN-----------GNPIFTIKGPCCCCSCCCDWEFEIKDP 165 (221)
T ss_pred ceEEEEEECC-----------CceEEEEeCCcceeccccceeeeeecc
Confidence 9999999976 46888998775421 12346777653
No 8
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=58.61 E-value=25 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=7.0
Q ss_pred EEEEeCCCCEEEEEE
Q 039555 48 FTVIDSHGNLVYRVD 62 (214)
Q Consensus 48 f~V~D~~G~~vf~V~ 62 (214)
..|+|++|++|.++.
T Consensus 29 v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 29 VTIYDSNGQVVRTIS 43 (81)
T ss_dssp EEEEETTS-EEEEEE
T ss_pred EEEEcCCCCEEEEEE
Confidence 444555555555544
No 9
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=54.67 E-value=65 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCeEEEEEeeecccccceeEEEeCC
Q 039555 68 CHELILMDGSGKSIFTMRRRKKLTVADSWRVFEGE 102 (214)
Q Consensus 68 ~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~~g~ 102 (214)
++.+.|+|++|+.|..+.+ .- -..|+....+
T Consensus 61 gd~l~L~d~~G~~v~~f~~-~~---~g~~~g~~~~ 91 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYR-SG---DGRFEGQTPD 91 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEE-EC---TTEEEEEECC
T ss_pred CCEEEEECCCCCEEEEEEc-cC---CeeEEeEcCC
Confidence 4789999999999999988 43 4578888865
No 10
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=54.36 E-value=18 Score=31.57 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=32.7
Q ss_pred eeEeCCCE-EEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 41 LVICCNGF-TVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 41 ~~~sg~~f-~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
+.+.|++| .|.+.+|..+|+=+|.+.+-..-.|.+++|.+|+.
T Consensus 95 lAI~G~GFF~V~~~~G~~~YTR~G~F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 95 VAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred EEECCCcEEEEEcCCCCeEEeeCCCeeECCCCCEECCCCCEecc
Confidence 33456665 66677898889999988555566699999999985
No 11
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=54.29 E-value=30 Score=30.33 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=28.6
Q ss_pred EEEEEEEEe-eeEeCCCEEEEeC-CCCEEEEEEeec--CCCCeEEEEcCCCC
Q 039555 32 TSLTVWRKS-LVICCNGFTVIDS-HGNLVYRVDNYV--GSCHELILMDGSGK 79 (214)
Q Consensus 32 ~~l~V~~k~-~~~sg~~f~V~D~-~G~~vf~V~g~~--s~~~~~~l~D~~G~ 79 (214)
..|.|-.+. .....+.|.|+|. +|+++|.++..- -...++.+..+.|-
T Consensus 103 ~~l~v~~~~~v~~~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~G~ 154 (264)
T PF04790_consen 103 SRLVVGPDGTVEAQSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPEGA 154 (264)
T ss_pred ceEEECCCccEEEecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCccE
Confidence 345554444 3334667777777 777777777753 34455555555555
No 12
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=52.80 E-value=73 Score=28.41 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=34.5
Q ss_pred CCCEEEEeCCCCEEEEEEee-c------CCCCeEEEEcCCCCeEEEEEeeeccccc
Q 039555 45 CNGFTVIDSHGNLVYRVDNY-V------GSCHELILMDGSGKSIFTMRRRKKLTVA 93 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~-~------s~~~~~~l~D~~G~~L~~ir~~k~ls~~ 93 (214)
.-.|.|.|..++.+|+|+|. . +......++..+|..+..|-+ +...+.
T Consensus 187 ~~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k-~w~g~~ 241 (292)
T KOG0621|consen 187 NPNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISR-KWAGLV 241 (292)
T ss_pred cceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEee-cccchh
Confidence 45788888888888888886 2 344556777778888888877 654443
No 13
>PF15529 Toxin_49: Putative toxin 49
Probab=50.40 E-value=28 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=18.4
Q ss_pred EEEEeeeEeCCCEEEEeCCCCEEEEEEee
Q 039555 36 VWRKSLVICCNGFTVIDSHGNLVYRVDNY 64 (214)
Q Consensus 36 V~~k~~~~sg~~f~V~D~~G~~vf~V~g~ 64 (214)
++.+. . .-.+|++||++|.++-++++.
T Consensus 22 ~~~~~-G-~vt~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 22 YRADP-G-RVTSYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred EeccC-C-cccceeEEcCCCcEeEEeecc
Confidence 44454 1 245899999999966666554
No 14
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=48.74 E-value=31 Score=29.82 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=31.8
Q ss_pred eEeCCCE-EEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 42 VICCNGF-TVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 42 ~~sg~~f-~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
.+.|++| .|.+.+|..+|+=+|.+.+-..-.|.+++|.+|+.
T Consensus 96 AI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 96 AIQGRGYFQIQLPDGETAYTRAGAFNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEcCCcEEEEEcCCCCEEEeeCCCeeECCCCCEECCCCCEeEe
Confidence 3356665 66667898889999988555555699999999985
No 15
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=48.21 E-value=1.5e+02 Score=25.61 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCeEEEEEeeec-c--cccceeEEEeCCcchhhhcccCCCCceEEEEeeeccCCccEEEEEEeccC---CCCCceeEEEE
Q 039555 78 GKSIFTMRRRKK-L--TVADSWRVFEGEVDECSRRKKLSKRPVCYVKKHMMSINSNVLAYVYYGGA---SSNKRYAYTVE 151 (214)
Q Consensus 78 G~~L~~ir~~k~-l--s~~~~w~v~~g~~~~~~~~~~~~~~~lf~vkk~~~~~k~~~~~~V~~~~~---~~~~~~~~~v~ 151 (214)
|-.-+.|++.|- + .+.+.|..|..+ +.++.|...||...-... .+-|.+... ..+...-=+|+
T Consensus 6 ~~vqC~I~R~k~g~~~~lyp~y~l~l~~---------~~~kfLLaArK~~~s~~s--~YiIS~~~~dlsr~s~~yvGKLr 74 (246)
T PF01167_consen 6 GPVQCFIRRDKSGLTRGLYPGYYLYLEG---------ENGKFLLAARKRKRSKTS--NYIISLDPDDLSRSSNNYVGKLR 74 (246)
T ss_dssp -EEEEEEEEESTTCCCT---EEEEEEES---------TTSEEEEEEEEECSSSSE--EEEEESSHHHHCTT---ESEEEE
T ss_pred cEEEEEEEEECCCCCcccCcEeEecccc---------CCCcEEEeeeecccCCCc--ceEEecCCCccccCCCceeeeec
Confidence 344577766231 2 357788888853 234788888876543344 445554321 11222334678
Q ss_pred eeeCCccEEEEeC
Q 039555 152 GSYANRSCKVLDE 164 (214)
Q Consensus 152 G~~~~~~~~I~~~ 164 (214)
.||++.+|.|||.
T Consensus 75 sNf~GT~F~iyD~ 87 (246)
T PF01167_consen 75 SNFLGTEFTIYDN 87 (246)
T ss_dssp E-TTSSEEEEEES
T ss_pred cccceeEEEEECC
Confidence 9999999999994
No 16
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=47.35 E-value=42 Score=25.55 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=8.7
Q ss_pred CCCEEEEeCCCCEEEEEEe
Q 039555 45 CNGFTVIDSHGNLVYRVDN 63 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g 63 (214)
||.+.|++.++...|+|.+
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~ 86 (126)
T cd06166 68 GDEIKVTTKNGTYKYKITS 86 (126)
T ss_pred CCEEEEEECCEEEEEEEEE
Confidence 4444444444444444444
No 17
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=46.79 E-value=19 Score=31.36 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=7.0
Q ss_pred ceEEEEEeCC
Q 039555 187 EVFLLIVHPS 196 (214)
Q Consensus 187 dtY~l~V~pg 196 (214)
.+|+|=|.|+
T Consensus 261 ~v~eiCvC~n 270 (292)
T KOG3950|consen 261 KVFEICVCPN 270 (292)
T ss_pred eEEEEEEecC
Confidence 4788877765
No 18
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.26 E-value=25 Score=30.46 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=31.5
Q ss_pred eEeCCCE-EEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 42 VICCNGF-TVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 42 ~~sg~~f-~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
.+.|++| .|.+.+|...|+=+|.+.+-..-.|.+++|.+|+.
T Consensus 96 AI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 96 AINGQGFFQVLMPDGTTAYTRDGSFQTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred EEcCCcEEEEEcCCCCeEEeeCCCceECCCCCEECCCCCEecc
Confidence 3456666 66667888889988888555555689999998885
No 19
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=45.74 E-value=25 Score=30.38 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=31.4
Q ss_pred eEeCCCE-EEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 42 VICCNGF-TVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 42 ~~sg~~f-~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
.+.|++| .|.+.+|..+|+=+|.+.+-..-.|.+++|.+|+.
T Consensus 94 AI~G~GfF~V~~~~g~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 94 AIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEcCCcEEEEEcCCCCeEEeeCCceEECCCCCEECCCCCEecC
Confidence 3356665 66667888889988888555555689999999885
No 20
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=44.94 E-value=44 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=10.8
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 039555 66 GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L~~ir~ 86 (214)
..++++.+.+..+.-.+.+.+
T Consensus 63 ~~Gd~i~v~~~~~~~~Y~V~~ 83 (127)
T cd05828 63 EPGDIITLQTLGGTYTYRVTS 83 (127)
T ss_pred CCCCEEEEEECCEEEEEEEee
Confidence 345555555554444444544
No 21
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=44.07 E-value=51 Score=26.96 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=11.6
Q ss_pred CCCCeEEEEcCCCCeE-EEEEe
Q 039555 66 GSCHELILMDGSGKSI-FTMRR 86 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L-~~ir~ 86 (214)
..++++.|.+.+|+.. +++..
T Consensus 110 ~~GD~I~v~~~~g~~~~Y~V~~ 131 (174)
T TIGR03784 110 RPGDVIRLQTPDGQWQSYQVTA 131 (174)
T ss_pred CCCCEEEEEECCCeEEEEEEeE
Confidence 4555666666666543 55544
No 22
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=41.49 E-value=23 Score=27.92 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=25.2
Q ss_pred EEEEeec---CCCCeEEEEcCCCCeEEEEEeeecccccc
Q 039555 59 YRVDNYV---GSCHELILMDGSGKSIFTMRRRKKLTVAD 94 (214)
Q Consensus 59 f~V~g~~---s~~~~~~l~D~~G~~L~~ir~~k~ls~~~ 94 (214)
||++|.. +.--+..|+|.+|+.+++-.. +.++-.|
T Consensus 36 yr~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~-~~L~~lP 73 (133)
T PF07680_consen 36 YRVEGPDVYGSFLIGIQLKDSTGHVVLNWDQ-EKLSSLP 73 (133)
T ss_pred EEcCCCccCCceeeEEEEECCCCCEEEEeCH-HHhhhCC
Confidence 4445533 667788999999999999988 5555333
No 23
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=41.43 E-value=38 Score=29.22 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=31.5
Q ss_pred eEeCCCE-EEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 42 VICCNGF-TVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 42 ~~sg~~f-~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
.+.|++| .|.+.+|...|+=+|.+.+-..-.|.+++|.+|+.
T Consensus 96 Ai~G~GfF~v~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 96 AIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred EECCCcEEEEEcCCCCeEEeeCCCeeECCCCCEECCCCCEEee
Confidence 3456766 56667888889988888555555699999999885
No 24
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=40.16 E-value=50 Score=27.21 Aligned_cols=35 Identities=31% Similarity=0.289 Sum_probs=27.4
Q ss_pred CccEEEEeCCCcEEEEEEeeeeccCCeeeeeceEEEEEeCCC
Q 039555 156 NRSCKVLDESRRVVAEIKRKKAAIGGVSFGVEVFLLIVHPSF 197 (214)
Q Consensus 156 ~~~~~I~~~~g~~VAeV~rk~~~~~~~~~g~dtY~l~V~pgv 197 (214)
.+++.|+++ |..|+||.-- ... +..+|.++|..|+
T Consensus 22 Arn~~ve~e-gveVgEiDIV-Aek-----~GerYavEVKAG~ 56 (209)
T COG4998 22 ARNMPVEDE-GVEVGEIDIV-AEK-----GGERYAVEVKAGM 56 (209)
T ss_pred eecceeecC-CeEEEEEEEE-Eec-----CCcEEEEEEeccc
Confidence 467888887 8899999864 222 7899999999884
No 25
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=39.21 E-value=91 Score=25.07 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=13.7
Q ss_pred EEcCCCCeEEEEEeeecccccceeEEE
Q 039555 73 LMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 73 l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
+.|.+|+.|-+|..---..-++-|+|-
T Consensus 110 V~d~~g~~lG~V~~v~~~~a~dll~I~ 136 (172)
T PRK00122 110 VVDEDGEELGKVTDILETGANDVLVVL 136 (172)
T ss_pred EEeCCCcEEEEEEEEccCCCceEEEEE
Confidence 455556666666552223345555553
No 26
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=38.93 E-value=71 Score=26.06 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCEEEEe-CCCCEEEEEEeecCCCCeEEEEcCCCCeEEEEEe
Q 039555 46 NGFTVID-SHGNLVYRVDNYVGSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 46 ~~f~V~D-~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ir~ 86 (214)
..+..+| ++|-+.+.-+|. -..+.+.++|++|+.+++|+.
T Consensus 68 ~a~C~fdvsegpvri~a~~n-vpyWSvsiyds~~nn~fS~ND 108 (182)
T COG5436 68 YAFCRFDVSEGPVRIEAKGN-VPYWSVSIYDSNGNNFFSIND 108 (182)
T ss_pred hheeEeeccCCcEEEEecCC-CceEEEEEEcCCCCceEEecc
Confidence 4677888 567776665553 455677899999999999988
No 27
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=37.51 E-value=54 Score=25.83 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=35.8
Q ss_pred EEEEeCCCCEEEEEEeec-C-------CCCeEEEEcCCCCeEEEEEeeecccccceeEEE
Q 039555 48 FTVIDSHGNLVYRVDNYV-G-------SCHELILMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 48 f~V~D~~G~~vf~V~g~~-s-------~~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
+.|+|++|+++-++.... . ..--..|.|.+|+.|+.-|......+...|.+-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 368999999999986643 1 223467899999988875541123556788754
No 28
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=36.53 E-value=84 Score=25.08 Aligned_cols=29 Identities=10% Similarity=0.018 Sum_probs=17.6
Q ss_pred EEEcCCCCeEEEEEeeecccccceeEEEe
Q 039555 72 ILMDGSGKSIFTMRRRKKLTVADSWRVFE 100 (214)
Q Consensus 72 ~l~D~~G~~L~~ir~~k~ls~~~~w~v~~ 100 (214)
.+.|.+|+.|-+|..--....++-|+|-.
T Consensus 104 ~V~d~~~~~lG~V~~v~~~~a~dll~V~~ 132 (165)
T TIGR02273 104 EVVTEEGEELGKVVEILETGANDVLVVRS 132 (165)
T ss_pred EEEcCCCcEEEEEEEEecCCCccEEEEEE
Confidence 46667777777776622234466666664
No 29
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=36.04 E-value=91 Score=22.14 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=6.3
Q ss_pred EEcCCCCeEEEEEe
Q 039555 73 LMDGSGKSIFTMRR 86 (214)
Q Consensus 73 l~D~~G~~L~~ir~ 86 (214)
..|.+|.-++.++.
T Consensus 57 ~Td~~G~a~~~l~~ 70 (92)
T smart00634 57 TTDANGIATVTLTS 70 (92)
T ss_pred eeCCCCEEEEEEEC
Confidence 34444444444443
No 30
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=35.92 E-value=87 Score=27.10 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=31.8
Q ss_pred EEEeCCCCEEEEEEeec---CCCCeEEEEcCCCCeEEEEEe
Q 039555 49 TVIDSHGNLVYRVDNYV---GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 49 ~V~D~~G~~vf~V~g~~---s~~~~~~l~D~~G~~L~~ir~ 86 (214)
+++|++|.+.++|.+.+ .+-..+.+.|..-+.-+.+.+
T Consensus 52 t~~de~g~v~~~v~~~l~~eGCfd~l~~~~~~~n~~~~Lv~ 92 (236)
T PF06788_consen 52 TLYDEDGEVTKRVSLTLSREGCFDTLELYDKENNTHLALVR 92 (236)
T ss_pred EEEcCCCcEEEEEEEEECCccceeeeeecccccccceEEEE
Confidence 57899999999999987 677788899987777777665
No 31
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=35.43 E-value=57 Score=27.80 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEEeecCCCCeEEE----EcCCCCeE
Q 039555 48 FTVIDSHGNLVYRVDNYVGSCHELIL----MDGSGKSI 81 (214)
Q Consensus 48 f~V~D~~G~~vf~V~g~~s~~~~~~l----~D~~G~~L 81 (214)
.+|+|++|++|++++....-.....+ .|.+|+++
T Consensus 130 i~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~l 167 (225)
T PRK06655 130 VTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNAL 167 (225)
T ss_pred EEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcC
No 32
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=35.03 E-value=85 Score=25.34 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=34.7
Q ss_pred CCEEEEeCCCCEEEEEEee------c-CCCCeEEEEcCCCCeEEEEEeeeccc-ccceeEEEeCC
Q 039555 46 NGFTVIDSHGNLVYRVDNY------V-GSCHELILMDGSGKSIFTMRRRKKLT-VADSWRVFEGE 102 (214)
Q Consensus 46 ~~f~V~D~~G~~vf~V~g~------~-s~~~~~~l~D~~G~~L~~ir~~k~ls-~~~~w~v~~g~ 102 (214)
.=+.|+|+||+++-.+.-. . ...--..++|.+|+.|+.=|. ..-. +...|...-|+
T Consensus 10 e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~-~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 10 EWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRT-ETKDFLPGMLDATAGG 73 (180)
T ss_pred eEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeC-CCCCCCCCcccccCCC
Confidence 3488999999999988321 1 334466778999988874333 2211 23456555443
No 33
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=34.39 E-value=1.1e+02 Score=24.60 Aligned_cols=27 Identities=4% Similarity=-0.157 Sum_probs=12.4
Q ss_pred EEcCCCCeEEEEEeeecccccceeEEE
Q 039555 73 LMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 73 l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
+.|.+|++|-++..--...-++-|.|-
T Consensus 110 V~d~~g~~lG~V~~v~~~ga~dll~I~ 136 (169)
T PRK14591 110 VKNINNDSFGVVVDIIETGANEVLVCK 136 (169)
T ss_pred EEeCCCCEEEEEEEEeecCCceEEEEE
Confidence 345555555555542122334445543
No 34
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=33.74 E-value=92 Score=21.32 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=26.7
Q ss_pred EEEeCCCCEEEEE-Eeec------CCCCeEEEEcCCCCeEEEEEe
Q 039555 49 TVIDSHGNLVYRV-DNYV------GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 49 ~V~D~~G~~vf~V-~g~~------s~~~~~~l~D~~G~~L~~ir~ 86 (214)
.|.|.+|+++-+| +|-. ..-.+=.|.|.+|+.|-....
T Consensus 14 ~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae~ 58 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAEP 58 (64)
T ss_pred eEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEEe
Confidence 4779999999994 5533 233344588888888877654
No 35
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=32.04 E-value=1.3e+02 Score=24.07 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=11.8
Q ss_pred EEcCCCCeEEEEEeeecccccceeEEE
Q 039555 73 LMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 73 l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
+.|.+|+.|-+|..---..-++-|.|-
T Consensus 90 V~d~~g~~lG~V~~V~~~ga~dvlvV~ 116 (161)
T PRK13828 90 AVDTGGALLGRVKAVHNFGAGDILEIA 116 (161)
T ss_pred EEeCCCCEEEEEEEEccCCCccEEEEE
Confidence 345555555555441112234444444
No 36
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=30.02 E-value=45 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=29.1
Q ss_pred EeCCC-EEEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 43 ICCNG-FTVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 43 ~sg~~-f~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
+.|++ |.|.+.+|+..|+=+|.+.+-..-.|.+++|.+|+-
T Consensus 82 I~G~GFF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 82 LQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLG 123 (246)
T ss_pred ECCCcEEEEEcCCCCEEEEeCCCeeECCCCCEEcCCCCCccC
Confidence 34554 456667888889988887555555588888888774
No 37
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=29.74 E-value=56 Score=28.30 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=29.9
Q ss_pred EeCCCE-EEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 43 ICCNGF-TVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 43 ~sg~~f-~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
+.|++| .|.+.+|..+|+=+|.+.+-..-.|.+++|.+|+.
T Consensus 93 i~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~ 134 (260)
T PRK12817 93 IDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRLEI 134 (260)
T ss_pred ECCCcEEEEEcCCCCeEEEeCCceeECCCCCEEcCCCCEEEe
Confidence 346554 56677888889988888554555588899998885
No 38
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=29.45 E-value=1.6e+02 Score=23.51 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=35.0
Q ss_pred CCCEEEEeCCCCEEEEEEeec-----CCCCeEE----EEcCC--CCeEEEEEeeecccccceeEEEeCC
Q 039555 45 CNGFTVIDSHGNLVYRVDNYV-----GSCHELI----LMDGS--GKSIFTMRRRKKLTVADSWRVFEGE 102 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~~-----s~~~~~~----l~D~~--G~~L~~ir~~k~ls~~~~w~v~~g~ 102 (214)
.+-|.|+|++|++++.+.-.. -.+.-+. +.|.+ |..+++-|.....++...|....++
T Consensus 4 ~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G 72 (180)
T cd03676 4 NELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAG 72 (180)
T ss_pred CcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeeccc
Confidence 467899999999998876542 2333333 33665 5555555541123456777656543
No 39
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=28.72 E-value=1.5e+02 Score=23.66 Aligned_cols=27 Identities=4% Similarity=-0.079 Sum_probs=11.8
Q ss_pred EEcCCCCeEEEEEeeecccccceeEEE
Q 039555 73 LMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 73 l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
+.|.+|+.|-++..--...-++-|.|-
T Consensus 102 V~~~~g~~lG~V~~v~~~ga~dvlvI~ 128 (165)
T PRK14592 102 VKLEDNTIYGYIKKIYNFGSCDIIEIS 128 (165)
T ss_pred EEcCCCCEEEEEEEEccCCCccEEEEE
Confidence 345555555555541112234444444
No 40
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=28.43 E-value=78 Score=27.37 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCEEEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 46 NGFTVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 46 ~~f~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
++|-+...+|...|+=+|.+.+-..-.|.+++|.+|+-
T Consensus 99 ~gFf~v~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vlg 136 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGSFTLNSDRYLQTASGAFVMG 136 (257)
T ss_pred CEEEEEcCCCCeeEeeCCCeeECCCCCEEcCCCCEEec
Confidence 66777777888889988887555555688888888774
No 41
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=28.16 E-value=61 Score=28.05 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=28.4
Q ss_pred EeCCC-EEEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEE
Q 039555 43 ICCNG-FTVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFT 83 (214)
Q Consensus 43 ~sg~~-f~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ 83 (214)
+.|++ |.|.+.+|+..|+=+|.+.+-..-.|.+++|.+|+-
T Consensus 97 I~G~GFF~V~~~~G~~~YTR~G~F~~d~~G~Lvt~~G~~vlg 138 (256)
T PRK12818 97 IQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVLG 138 (256)
T ss_pred ECCCceEEEEcCCCCeEEeeCCCeeECCCCCEEcCCCCEEec
Confidence 34654 456667788789888887444444588888888874
No 42
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.05 E-value=43 Score=23.84 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=9.3
Q ss_pred CEEEEeCCCCEEEEE
Q 039555 47 GFTVIDSHGNLVYRV 61 (214)
Q Consensus 47 ~f~V~D~~G~~vf~V 61 (214)
+|.|+|.+|+.||+-
T Consensus 27 D~~v~d~~g~~vwrw 41 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRW 41 (82)
T ss_dssp EEEEE-TT--EEEET
T ss_pred EEEEECCCCCEEEEe
Confidence 677888888888874
No 43
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=27.40 E-value=64 Score=27.57 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=12.0
Q ss_pred CeEEEEcCCCCeEEEEEe
Q 039555 69 HELILMDGSGKSIFTMRR 86 (214)
Q Consensus 69 ~~~~l~D~~G~~L~~ir~ 86 (214)
-.+.|+|++|+.+-++.-
T Consensus 126 v~v~I~D~~G~vV~t~~~ 143 (223)
T PRK12813 126 AELVVRDAAGAEVARETV 143 (223)
T ss_pred EEEEEEcCCCCEEEEEee
Confidence 366777777777766543
No 44
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=27.14 E-value=1.2e+02 Score=17.99 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=13.4
Q ss_pred EeCCCCEEEEEEeecCCCCeEEEEcCCCCeE
Q 039555 51 IDSHGNLVYRVDNYVGSCHELILMDGSGKSI 81 (214)
Q Consensus 51 ~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L 81 (214)
||++|+++=.++... .....-+|+.|+++
T Consensus 1 YD~~G~l~~~~d~~G--~~~~y~YD~~g~l~ 29 (38)
T PF05593_consen 1 YDANGRLTSVTDPDG--RTTRYTYDAAGRLT 29 (38)
T ss_pred CCCCCCEEEEEcCCC--CEEEEEECCCCCEE
Confidence 355666655553321 12234455555543
No 45
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=26.79 E-value=84 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=33.9
Q ss_pred EEEEeCCCCEEEEEEeec----CCC--C--eEEEEcCCCCeEEEEEeeecccccceeEEE
Q 039555 48 FTVIDSHGNLVYRVDNYV----GSC--H--ELILMDGSGKSIFTMRRRKKLTVADSWRVF 99 (214)
Q Consensus 48 f~V~D~~G~~vf~V~g~~----s~~--~--~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~ 99 (214)
..|+|.+|+++-+..-.. ... . -..+.|.+|+.|+.-|......+...|.+-
T Consensus 4 ~~~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~ 63 (165)
T cd02885 4 VILVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNT 63 (165)
T ss_pred EEEECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCccccc
Confidence 578999999999766543 111 1 255789999988875551123456667754
No 46
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=26.65 E-value=1.5e+02 Score=22.32 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=13.3
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 039555 66 GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L~~ir~ 86 (214)
..++++.|.|..+.-.+++-.
T Consensus 66 ~~Gd~v~v~~~~~~~~Y~V~~ 86 (128)
T cd00004 66 KKGDKIYLTDGGKTYVYKVTS 86 (128)
T ss_pred CCCCEEEEEECCEEEEEEEEE
Confidence 456677777776666666655
No 47
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=26.58 E-value=1.1e+02 Score=23.31 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=26.5
Q ss_pred EEeeeEeCCCEEEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEEEEEe
Q 039555 38 RKSLVICCNGFTVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 38 ~k~~~~sg~~f~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~~ir~ 86 (214)
...+.+..++|.+++.+ .+..|.. -++...++|++|..+|.+-.
T Consensus 62 ~QPi~iN~gg~~~y~gq--~a~~vt~---~~hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 62 AQPIIINKGGFPVYNGQ--IAKFVTV---PGHSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp -SSEEE-TTS-EEETTE--E--EEES---SSEEEEEE-TTS-EEEEESE
T ss_pred cCCEEEccCCceEEccc--eeEEEEc---cCceEEEEeCCCcEEEeecc
Confidence 45577878899888654 4444444 34567899999999998855
No 48
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=26.50 E-value=1.4e+02 Score=23.03 Aligned_cols=21 Identities=10% Similarity=0.280 Sum_probs=12.1
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 039555 66 GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L~~ir~ 86 (214)
..++++.+.|..|.--+++..
T Consensus 67 ~~Gd~i~v~~~~~~~~Y~V~~ 87 (137)
T cd05830 67 RPGDKIVVETADGWYTYVVRS 87 (137)
T ss_pred CCCCEEEEEECCeEEEEEEeE
Confidence 455566666666655555544
No 49
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=25.36 E-value=69 Score=27.56 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=30.9
Q ss_pred ceEEEEEEEEeeeEeCCC-EEEEeCCCCEEEEEEeecCCCCeEEEEcCCCCeEE
Q 039555 30 ECTSLTVWRKSLVICCNG-FTVIDSHGNLVYRVDNYVGSCHELILMDGSGKSIF 82 (214)
Q Consensus 30 ~~~~l~V~~k~~~~sg~~-f~V~D~~G~~vf~V~g~~s~~~~~~l~D~~G~~L~ 82 (214)
.+..+|=+.--..+.+|+ ++|.|.+|...|+=.|.+.+.... ++-.+|.|++
T Consensus 69 G~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g-~lTiqg~pVi 121 (251)
T COG4787 69 GSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNIQIDATG-QLTIQGHPVI 121 (251)
T ss_pred ccccccCCcceEEEccCceEEEEcCCCcchheecCceEECccc-ceecCCCeee
Confidence 334444433333344555 579999999999999976333322 4455566654
No 50
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.25 E-value=1.2e+02 Score=25.86 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=14.1
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q 039555 68 CHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 68 ~~~~~l~D~~G~~L~~ir~ 86 (214)
.-.+.|+|.+|+.+-++.-
T Consensus 123 ~v~i~I~d~~G~~V~t~~l 141 (221)
T PRK12634 123 FVNFEITDANGAFVKQISV 141 (221)
T ss_pred eEEEEEEcCCCCEEEEEec
Confidence 3468888888888877743
No 51
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=24.86 E-value=2.1e+02 Score=23.11 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=5.1
Q ss_pred cCCCCeEE-EEEe
Q 039555 75 DGSGKSIF-TMRR 86 (214)
Q Consensus 75 D~~G~~L~-~ir~ 86 (214)
|.+|+.|- ++..
T Consensus 109 d~~g~~lGG~V~~ 121 (171)
T PRK14590 109 DETGKPLNWKLTD 121 (171)
T ss_pred eCCCCEeeeEEEE
Confidence 44444443 4433
No 52
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=24.85 E-value=1e+02 Score=26.37 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=13.8
Q ss_pred CCeEEEEcCCCCeEEEEE
Q 039555 68 CHELILMDGSGKSIFTMR 85 (214)
Q Consensus 68 ~~~~~l~D~~G~~L~~ir 85 (214)
.-++.|+|++|+.+-++.
T Consensus 130 ~v~v~I~D~~G~vV~t~~ 147 (230)
T PRK12633 130 KVTVKVLDPSGAVVRTME 147 (230)
T ss_pred EEEEEEEeCCCCEEEEEe
Confidence 456788888888887774
No 53
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=24.12 E-value=1.6e+02 Score=22.20 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=10.7
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 039555 66 GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L~~ir~ 86 (214)
..++++.|.+..+.--+++..
T Consensus 65 ~~Gd~I~l~~~~~~~~Y~V~~ 85 (127)
T cd06165 65 KVGDKIYLTDKDNVYEYKVTS 85 (127)
T ss_pred cCCCEEEEEECCEEEEEEEee
Confidence 345555555555544444444
No 54
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=23.78 E-value=1.2e+02 Score=20.70 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.1
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 039555 66 GSCHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L~~ir~ 86 (214)
.+..++.++|.+|+.|..++=
T Consensus 43 ~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 43 PGDWRVEVVDEDGQVLGSLRF 63 (66)
T ss_pred CcCEEEEEEcCCCCEEEEEEE
Confidence 567899999999999988764
No 55
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=23.25 E-value=3.2e+02 Score=20.41 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.1
Q ss_pred ceEEEEEEEE-eeeEeCCCEEEEeCCCCEEEEEEee
Q 039555 30 ECTSLTVWRK-SLVICCNGFTVIDSHGNLVYRVDNY 64 (214)
Q Consensus 30 ~~~~l~V~~k-~~~~sg~~f~V~D~~G~~vf~V~g~ 64 (214)
++-.+.|... .++|+..+|||-+. |+++++.--|
T Consensus 45 ~i~ayrI~~D~tlaFSd~HfTv~~~-g~Pi~qf~rY 79 (100)
T PF06903_consen 45 RIDAYRITPDGTLAFSDTHFTVDND-GKPIQQFIRY 79 (100)
T ss_pred ceeeEEEeCCCeEEEecceEEECCC-CCceEeEEEE
Confidence 3446666665 67888888887444 8887777665
No 56
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=22.95 E-value=1.8e+02 Score=22.45 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCCEEEEEEeec---------CCCCeEEEEcCCCCeEEE
Q 039555 54 HGNLVYRVDNYV---------GSCHELILMDGSGKSIFT 83 (214)
Q Consensus 54 ~G~~vf~V~g~~---------s~~~~~~l~D~~G~~L~~ 83 (214)
+|.-+|.|+|.. ...=++.|+|.+|++|.+
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEE
Confidence 788899998865 133488999999999965
No 57
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=22.42 E-value=2.2e+02 Score=24.65 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCEEEEEEeec-------------CCCCeEEEEcCCCCeEEEEEeeecccccceeEEEeCC
Q 039555 45 CNGFTVIDSHGNLVYRVDNYV-------------GSCHELILMDGSGKSIFTMRRRKKLTVADSWRVFEGE 102 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~~-------------s~~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~~g~ 102 (214)
.+.+.|+|++++++-+..-.. -..=.+.|.|.+|+.|++-|......+-..|..-.++
T Consensus 22 ~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~G 92 (247)
T PLN02552 22 EDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCS 92 (247)
T ss_pred cCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCC
Confidence 368899999999998886421 1222567889999999998872234456678665433
No 58
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=22.04 E-value=16 Score=26.17 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=18.9
Q ss_pred eeEeCC-CEEEEeCCCCEEEEEEee-cCCCCeEEEEcCCCCeEE
Q 039555 41 LVICCN-GFTVIDSHGNLVYRVDNY-VGSCHELILMDGSGKSIF 82 (214)
Q Consensus 41 ~~~sg~-~f~V~D~~G~~vf~V~g~-~s~~~~~~l~D~~G~~L~ 82 (214)
+.|.++ =|-|+|.+|..+.--... .-+..-.-+.|++|.+++
T Consensus 51 ~r~~~~gY~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 51 LRYGGDGYFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --SBTTB--EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred cccCCCCeEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 455544 478899999876553322 234444558899998875
No 59
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=20.79 E-value=78 Score=20.53 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=11.6
Q ss_pred CCEEEEeCCCCEEEEEE
Q 039555 46 NGFTVIDSHGNLVYRVD 62 (214)
Q Consensus 46 ~~f~V~D~~G~~vf~V~ 62 (214)
+=|.=.|++|+++|.=.
T Consensus 14 ~vYk~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 14 EVYKWVDENGVVHYSDT 30 (60)
T ss_pred cEEEEECCCCCEEECcc
Confidence 34555788888888643
No 60
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=20.72 E-value=1.4e+02 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCCCeEEEEcCCCCeEEEEEeee---cccccceeEEEe
Q 039555 66 GSCHELILMDGSGKSIFTMRRRK---KLTVADSWRVFE 100 (214)
Q Consensus 66 s~~~~~~l~D~~G~~L~~ir~~k---~ls~~~~w~v~~ 100 (214)
+.+....++|.+|.--+.=+. . .--.-+.|.+|.
T Consensus 68 ~~G~~Yyl~d~dg~g~~~~~~-~~~~~~~~~p~W~i~~ 104 (105)
T PF11191_consen 68 KAGPPYYLVDPDGDGNFSRSD-ANSDSDVSPPQWVIFS 104 (105)
T ss_pred CCCCCEEEECCCCCCcccccc-cccCCCCCCcEEEEee
Confidence 455888899999875554443 2 122366777764
No 61
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=20.56 E-value=3.4e+02 Score=23.31 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=25.8
Q ss_pred ccEEEEeC--CCcEEEEEEeeeeccCCeeeeeceEEEEEeCCCCHHHHHHHHH
Q 039555 157 RSCKVLDE--SRRVVAEIKRKKAAIGGVSFGVEVFLLIVHPSFDAAFAMALVL 207 (214)
Q Consensus 157 ~~~~I~~~--~g~~VAeV~rk~~~~~~~~~g~dtY~l~V~pgvD~ali~alvv 207 (214)
.+|.++.. .+.+|.+.-|- ++|+|.+++.--.-..-+.|+|+
T Consensus 199 KNFql~~~~~~~~~~lqfGk~---------~~~~f~~d~~~Pls~~qAF~i~l 242 (246)
T PF01167_consen 199 KNFQLVHPSDPDRIVLQFGKV---------GKDVFTMDFRYPLSPLQAFAIAL 242 (246)
T ss_dssp TEEEEEBTTBTTSESEEEEEE---------ETTEEEEEEETT-BHHHHHHHHH
T ss_pred ceeEEEccCCCCeEEEEEEEe---------cCCEEEEEecCCCCHHHHHHHHH
Confidence 45777664 25566665553 68999999997665443444443
No 62
>PHA00458 single-stranded DNA-binding protein
Probab=20.02 E-value=1e+02 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=24.3
Q ss_pred EEeCCCCEEEEEEeecCCC---------CeEEEEcCCCCeEE
Q 039555 50 VIDSHGNLVYRVDNYVGSC---------HELILMDGSGKSIF 82 (214)
Q Consensus 50 V~D~~G~~vf~V~g~~s~~---------~~~~l~D~~G~~L~ 82 (214)
..+.+|++.|+.+.+.|.. ....|.|+.|.+|-
T Consensus 98 ~eNedG~v~F~FK~~aS~~dkktGe~~~i~l~v~DskGK~l~ 139 (233)
T PHA00458 98 FDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIE 139 (233)
T ss_pred ccCCCceEEEEEEeeeecccccCCcccccceeEEcCCCcCcC
Confidence 3557899999999976333 23568999998775
Done!