Query 039555
Match_columns 214
No_of_seqs 108 out of 458
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 2.2E-39 7.5E-44 272.2 19.9 179 23-214 31-212 (217)
2 1zxu_A AT5G01750 protein; PFAM 97.9 0.00023 7.7E-09 58.8 12.6 98 53-164 34-136 (217)
3 2fim_A Tubby related protein 1 57.0 88 0.003 26.3 13.1 104 77-193 36-159 (276)
4 3c5n_A Tubby-related protein 1 53.1 96 0.0033 25.6 13.1 101 80-193 15-135 (246)
5 2v2f_A Penicillin binding prot 47.8 11 0.00039 19.8 2.0 13 49-61 8-20 (26)
6 3c12_A FLGD, flagellar protein 35.0 30 0.001 25.7 3.2 17 69-85 41-57 (138)
7 2ln7_A LPXTG-SITE transpeptida 34.7 13 0.00045 28.2 1.2 19 45-63 79-97 (147)
8 1hzt_A Isopentenyl diphosphate 32.7 39 0.0013 25.7 3.7 52 46-98 4-64 (190)
9 4he6_A Peptidase family U32; u 31.4 44 0.0015 22.7 3.4 35 52-86 16-52 (89)
10 3h9n_A Ribosome maturation fac 28.3 1.2E+02 0.0043 23.4 6.0 28 73-100 105-132 (177)
11 2pny_A Isopentenyl-diphosphate 26.3 1.3E+02 0.0044 24.4 6.0 53 45-98 37-102 (246)
12 2dho_A Isopentenyl-diphosphate 23.8 92 0.0031 25.1 4.6 53 45-98 26-91 (235)
13 2kw8_A LPXTG-SITE transpeptida 23.7 26 0.0009 26.7 1.2 19 68-86 92-110 (158)
14 3u88_M Histone-lysine N-methyl 23.6 48 0.0016 21.9 2.2 18 191-208 28-45 (75)
15 2h1z_A Hybrid atracotoxin; bet 23.1 56 0.0019 19.2 2.2 12 52-63 28-39 (39)
16 3fn5_A Sortase A; sortase-fold 22.7 30 0.001 27.5 1.3 40 45-84 102-143 (187)
17 1t2w_A Sortase; transpeptidase 20.8 57 0.0019 24.3 2.5 20 45-64 78-97 (145)
18 3g66_A Sortase C; pilus, trans 20.7 46 0.0016 26.9 2.1 20 45-64 132-151 (212)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=2.2e-39 Score=272.21 Aligned_cols=179 Identities=30% Similarity=0.528 Sum_probs=139.1
Q ss_pred ccCCCCCceEEEEEEEEeeeEeCCCEEEEeCCCCEEEEEEeec-CCCCeEEEEcCCCCeEEEEEeeecccccceeEEEeC
Q 039555 23 KKNIDEGECTSLTVWRKSLVICCNGFTVIDSHGNLVYRVDNYV-GSCHELILMDGSGKSIFTMRRRKKLTVADSWRVFEG 101 (214)
Q Consensus 23 ~~~~~~~~~~~l~V~~k~~~~sg~~f~V~D~~G~~vf~V~g~~-s~~~~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~~g 101 (214)
+|| ++.+++|+||+|.+++++++|+|+|++|+++|+|+|+. +++.++.|+|++|++|++|++ |.++++++|++|.+
T Consensus 31 ~~~--~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~r-k~~~~~~~~~v~~~ 107 (217)
T 1zxu_A 31 KYC--APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLRE-KMVSMHDRWQVFRG 107 (217)
T ss_dssp GGB--CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC-------CEEEEEET
T ss_pred ccc--CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEc-cccccCcEEEEEcC
Confidence 677 78999999999999999999999999999999999997 999999999999999999999 99999999999998
Q ss_pred CcchhhhcccCCCCceEEEEeeecc-CCccEEEEEEeccCCCCCceeEEEEeeeCCccEEEEeCC-CcEEEEEEeeeecc
Q 039555 102 EVDECSRRKKLSKRPVCYVKKHMMS-INSNVLAYVYYGGASSNKRYAYTVEGSYANRSCKVLDES-RRVVAEIKRKKAAI 179 (214)
Q Consensus 102 ~~~~~~~~~~~~~~~lf~vkk~~~~-~k~~~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~-g~~VAeV~rk~~~~ 179 (214)
++. +.++++|+|++++.+ +++ +++|+.+++++++.+.|+|+|+|++++|+|++++ |++||+|+|++. .
T Consensus 108 ~~~-------~~~~~i~~vrk~~~~~~~~--~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~-~ 177 (217)
T 1zxu_A 108 GST-------DQRDLLYTVKRSSMLQLKT--KLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHT-V 177 (217)
T ss_dssp TCC-------CGGGEEEEEEC-------C--CEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC----
T ss_pred CCC-------CCCcEEEEEEEeccccCCC--eEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeee-c
Confidence 732 123589999998423 677 6788887655555688999999999999999986 799999999954 4
Q ss_pred CCeeeeeceEEEEEeCCCCHHHHHHHHHHhccccC
Q 039555 180 GGVSFGVEVFLLIVHPSFDAAFAMALVLLLDQMFS 214 (214)
Q Consensus 180 ~~~~~g~dtY~l~V~pgvD~ali~alvv~lD~i~~ 214 (214)
+++++++|+|.|+|.||+|.+|+||+|++||+|++
T Consensus 178 ~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~ 212 (217)
T 1zxu_A 178 QSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNR 212 (217)
T ss_dssp -----CBCSEEEEECTTSBHHHHHHHHHHHHHHHC
T ss_pred cccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhh
Confidence 57888999999999999999999999999999864
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.86 E-value=0.00023 Score=58.82 Aligned_cols=98 Identities=17% Similarity=0.328 Sum_probs=66.6
Q ss_pred CCCCEEEEEEeec-CCCC-eEEEEcCCCCeEEEEEeeecccccceeEEEeCCcchhhhcccCCCCceEEEEeeeccCCcc
Q 039555 53 SHGNLVYRVDNYV-GSCH-ELILMDGSGKSIFTMRRRKKLTVADSWRVFEGEVDECSRRKKLSKRPVCYVKKHMMSINSN 130 (214)
Q Consensus 53 ~~G~~vf~V~g~~-s~~~-~~~l~D~~G~~L~~ir~~k~ls~~~~w~v~~g~~~~~~~~~~~~~~~lf~vkk~~~~~k~~ 130 (214)
+.+...|.|+-+. ++.. +..++|.+|+.++++.. +.+++..+..++... ++++++|+++...+.+
T Consensus 34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~-~~~~~~~~~~l~D~~-----------G~~l~~i~rk~~~~~~- 100 (217)
T 1zxu_A 34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE-PVFGLHDKRVLLDGS-----------GTPVVTLREKMVSMHD- 100 (217)
T ss_dssp CSSCEEEEEECC-----CCCEEEEETTSCEEEEEEC-SSTTCCSEEEEECTT-----------SCEEEEEEC------C-
T ss_pred CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEc-cccCCCCEEEEECCC-----------CCEEEEEEccccccCc-
Confidence 4689999999987 6666 99999999999999999 888888888888865 5899999997654567
Q ss_pred EEEEEEeccCCCCCceeEEEEee--e-CCccEEEEeC
Q 039555 131 VLAYVYYGGASSNKRYAYTVEGS--Y-ANRSCKVLDE 164 (214)
Q Consensus 131 ~~~~V~~~~~~~~~~~~~~v~G~--~-~~~~~~I~~~ 164 (214)
+++|+.+....++.+-++|+-. + ++..|.|..+
T Consensus 101 -~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~ 136 (217)
T 1zxu_A 101 -RWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG 136 (217)
T ss_dssp -EEEEEETTCCCGGGEEEEEEC-------CCEEEEET
T ss_pred -EEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence 7788875321112345677644 3 4567888875
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=56.99 E-value=88 Score=26.34 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred CCCeEEEEEeeec-c--cccceeEEEeCCcchhhhcccCCCCceEEEEeeeccCCccEEEEEEeccCC---CCCceeEEE
Q 039555 77 SGKSIFTMRRRKK-L--TVADSWRVFEGEVDECSRRKKLSKRPVCYVKKHMMSINSNVLAYVYYGGAS---SNKRYAYTV 150 (214)
Q Consensus 77 ~G~~L~~ir~~k~-l--s~~~~w~v~~g~~~~~~~~~~~~~~~lf~vkk~~~~~k~~~~~~V~~~~~~---~~~~~~~~v 150 (214)
.|-.-+.|++.|- + ++.++|..|..+ +.+..|+..||...-... .+-|.+...+ ++...-=++
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~---------~~~~fLLaarK~k~~~ts--~YiIS~d~~dlsr~s~~yvGKL 104 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDT---------EKKVFLLAGRKRKRSKTA--NYLISIDPTNLSRGGENFIGKL 104 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECS---------SSCEEEEEEEECTTCSSC--EEEEESCTTC------CEEEEE
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeC---------CCCEEEEEEEeccCCCCc--eEEEEecchhcccCCceEEEEE
Confidence 4556777865231 1 356899999854 224556677765433334 3445543211 122233467
Q ss_pred EeeeCCccEEEEeCC--------------CcEEEEEEeeeeccCCeeeeeceEEEEE
Q 039555 151 EGSYANRSCKVLDES--------------RRVVAEIKRKKAAIGGVSFGVEVFLLIV 193 (214)
Q Consensus 151 ~G~~~~~~~~I~~~~--------------g~~VAeV~rk~~~~~~~~~g~dtY~l~V 193 (214)
+-||++..|+|||.. .+.+|.|.-+.... ..-|.-...+.+
T Consensus 105 rSNflGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvl--g~~gPR~m~v~i 159 (276)
T 2fim_A 105 RSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVL--GFRGPRRMTVII 159 (276)
T ss_dssp EECSSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC-----------CCEEEEE
T ss_pred EEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEeccc--CCCCCeEEEEEe
Confidence 889999999999851 16788888764322 111345555555
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=53.13 E-value=96 Score=25.61 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=54.3
Q ss_pred eEEEEEeeec-c--cccceeEEEeCCcchhhhcccCCCCceEEEEeeeccCCccEEEEEEeccCC---CCCceeEEEEee
Q 039555 80 SIFTMRRRKK-L--TVADSWRVFEGEVDECSRRKKLSKRPVCYVKKHMMSINSNVLAYVYYGGAS---SNKRYAYTVEGS 153 (214)
Q Consensus 80 ~L~~ir~~k~-l--s~~~~w~v~~g~~~~~~~~~~~~~~~lf~vkk~~~~~k~~~~~~V~~~~~~---~~~~~~~~v~G~ 153 (214)
.-+.|++.|- + ++.++|..|..+ +.+..|...||...-... .+.|.+...+ ++...-=+++-|
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~~~---------~~~~fLlaark~~~~~~s--~YiIS~d~~dlsr~s~~yvGKLrsN 83 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHLDT---------EKKVFLLAGRKRKRSKTA--NYLISIDPTNLSRGGENFIGKLRSN 83 (246)
T ss_dssp EEEEEEECC------CCCEEEEEESS---------SSCCEEEEEEECTTCSSC--EEEEESCTTC------CEEEEEEEC
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeC---------CCcEEEEeeeeccCCCCc--eEEEEeCccccccCCceEEEEEEEc
Confidence 4466665121 1 356899888854 123456666665433334 3445543221 122233467889
Q ss_pred eCCccEEEEeCC--------------CcEEEEEEeeeeccCCeeeeeceEEEEE
Q 039555 154 YANRSCKVLDES--------------RRVVAEIKRKKAAIGGVSFGVEVFLLIV 193 (214)
Q Consensus 154 ~~~~~~~I~~~~--------------g~~VAeV~rk~~~~~~~~~g~dtY~l~V 193 (214)
|++..|+|||.. .+.+|.|.-+.... ..-|.-...+.+
T Consensus 84 f~Gt~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l--~~~gPR~m~v~i 135 (246)
T 3c5n_A 84 LLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVL--GFRGPRRMTVII 135 (246)
T ss_dssp SSSSEEEEECSCBCGGGCTTSCGGGBCCEEEEEEECCCCC--C---CCCEEEEE
T ss_pred cCCCEEEEECCCCCcccccCcccccccEEEEEEEEEeccc--CCCCCeEEEEEe
Confidence 999999999851 16788888764332 111445566655
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=47.83 E-value=11 Score=19.80 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=9.1
Q ss_pred EEEeCCCCEEEEE
Q 039555 49 TVIDSHGNLVYRV 61 (214)
Q Consensus 49 ~V~D~~G~~vf~V 61 (214)
.|||.+|+++..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 4677777777665
No 6
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=35.03 E-value=30 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=10.1
Q ss_pred CeEEEEcCCCCeEEEEE
Q 039555 69 HELILMDGSGKSIFTMR 85 (214)
Q Consensus 69 ~~~~l~D~~G~~L~~ir 85 (214)
-.+.|+|++|+.+-++.
T Consensus 41 v~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 41 VNFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEEECSSCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEE
Confidence 34556666666666654
No 7
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=34.71 E-value=13 Score=28.16 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=9.5
Q ss_pred CCCEEEEeCCCCEEEEEEe
Q 039555 45 CNGFTVIDSHGNLVYRVDN 63 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g 63 (214)
||.+.|++.++...|+|+.
T Consensus 79 GD~i~v~~~~~~~~Y~V~~ 97 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQK 97 (147)
T ss_dssp TCEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEe
Confidence 4445555555555555544
No 8
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=32.67 E-value=39 Score=25.72 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=18.8
Q ss_pred CCEEEEeCCCCEEEEEEeec-C-------CCCeEEEEcCCCCeEEEEEeeec-ccccceeEE
Q 039555 46 NGFTVIDSHGNLVYRVDNYV-G-------SCHELILMDGSGKSIFTMRRRKK-LTVADSWRV 98 (214)
Q Consensus 46 ~~f~V~D~~G~~vf~V~g~~-s-------~~~~~~l~D~~G~~L~~ir~~k~-ls~~~~w~v 98 (214)
+-+.|+|.+|+++..+.-.. . ..-...+.+.+|+.|+.-|. .. -.+...|..
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~-~~~~~~~g~w~~ 64 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRA-LSKKAWPGVWTN 64 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEEC-TTCSSSTTCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeC-CCCCCCCCcccC
Confidence 45789999999988765533 2 12245678888987776554 22 234577877
No 9
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=31.36 E-value=44 Score=22.72 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=26.2
Q ss_pred eCC-CCEEEEEEeecCCCCeEEEEcCCC-CeEEEEEe
Q 039555 52 DSH-GNLVYRVDNYVGSCHELILMDGSG-KSIFTMRR 86 (214)
Q Consensus 52 D~~-G~~vf~V~g~~s~~~~~~l~D~~G-~~L~~ir~ 86 (214)
|.+ |.....++++++.++++.++-+.| +.-+++.+
T Consensus 16 ~~~~g~~~ie~rN~f~~GD~iEi~~P~g~~~~~~v~~ 52 (89)
T 4he6_A 16 DPETGIATVQQRNHFRPGDEVEFFGPEIENFTQVIEK 52 (89)
T ss_dssp ETTTTEEEEEESSCBCTTCEEEEESTTSCCEEEECCC
T ss_pred eCCCCEEEEEEcCCcCCCCEEEEEcCCCCcEEEEeHH
Confidence 444 777788888889999999999998 55455543
No 10
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=28.35 E-value=1.2e+02 Score=23.35 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=15.1
Q ss_pred EEcCCCCeEEEEEeeecccccceeEEEe
Q 039555 73 LMDGSGKSIFTMRRRKKLTVADSWRVFE 100 (214)
Q Consensus 73 l~D~~G~~L~~ir~~k~ls~~~~w~v~~ 100 (214)
+.|.+|..|-++..--...-++-|+|-.
T Consensus 105 V~~~~g~~lG~V~~v~~~gandvl~V~~ 132 (177)
T 3h9n_A 105 VVNLEGYTMGTVTEMMETGSNDVLVVKA 132 (177)
T ss_dssp EEETTCCEEEEEEEEEESSSCEEEEEEC
T ss_pred EEeCCCCEEEEEEEEeeCCCcEEEEEEe
Confidence 4566666666666511123455666654
No 11
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=26.28 E-value=1.3e+02 Score=24.40 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=34.9
Q ss_pred CCCEEEEeCCCCEEEEEEeec-C--------CCC---eEEEEcCCCCeEEEEEeeec-ccccceeEE
Q 039555 45 CNGFTVIDSHGNLVYRVDNYV-G--------SCH---ELILMDGSGKSIFTMRRRKK-LTVADSWRV 98 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~~-s--------~~~---~~~l~D~~G~~L~~ir~~k~-ls~~~~w~v 98 (214)
.+-+.|+|++|+++.++.-.. . ..+ ...+.|.+|+.|++-|. .. ..+...|..
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs-~~K~~~pG~W~~ 102 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRS-DTKVTFPGYFTD 102 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEEC-TTCSSSTTCBCC
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEec-CCCCCCCCceEe
Confidence 456999999999999986542 1 111 33578999988876554 21 234556763
No 12
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=23.79 E-value=92 Score=25.07 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCCEEEEEEeec-C--------CCC---eEEEEcCCCCeEEEEEeeec-ccccceeEE
Q 039555 45 CNGFTVIDSHGNLVYRVDNYV-G--------SCH---ELILMDGSGKSIFTMRRRKK-LTVADSWRV 98 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~~-s--------~~~---~~~l~D~~G~~L~~ir~~k~-ls~~~~w~v 98 (214)
.+-+.|+|++|+++.++.-.. . ..+ ...+.|.+|+.|++-|. .. ..+...|..
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~-~~k~~~pg~W~~ 91 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRS-DAKITFPGCFTN 91 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEEC-TTCSSSTTCEES
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEec-CcCCCCCCcEEe
Confidence 566999999999999985542 1 111 23578999988886554 22 234567874
No 13
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=23.70 E-value=26 Score=26.66 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=8.6
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q 039555 68 CHELILMDGSGKSIFTMRR 86 (214)
Q Consensus 68 ~~~~~l~D~~G~~L~~ir~ 86 (214)
++++.+.+..+.-.+++..
T Consensus 92 Gd~i~v~~~~~~~~Y~V~~ 110 (158)
T 2kw8_A 92 GDKIYLYDNENEYEYAVTG 110 (158)
T ss_dssp TCEEEEECSSEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEE
Confidence 4455555554444444433
No 14
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=23.62 E-value=48 Score=21.93 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=14.7
Q ss_pred EEEeCCCCHHHHHHHHHH
Q 039555 191 LIVHPSFDAAFAMALVLL 208 (214)
Q Consensus 191 l~V~pgvD~ali~alvv~ 208 (214)
|-|.||+|.||.++.+|-
T Consensus 28 lgvgpGFDAALqvSa~Ig 45 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIG 45 (75)
T ss_dssp CEECCCCCHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHH
Confidence 468899999998877664
No 15
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=23.06 E-value=56 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.1
Q ss_pred eCCCCEEEEEEe
Q 039555 52 DSHGNLVYRVDN 63 (214)
Q Consensus 52 D~~G~~vf~V~g 63 (214)
++||+.|+|.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 689999999863
No 16
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=22.69 E-value=30 Score=27.45 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCEEEEEEeec-CCCCeEEEEcC-CCCeEEEE
Q 039555 45 CNGFTVIDSHGNLVYRVDNYV-GSCHELILMDG-SGKSIFTM 84 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~~-s~~~~~~l~D~-~G~~L~~i 84 (214)
||.+.|++.++...|+|++.. --+.++.++++ .|++.++|
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~vl~~~~g~~~LTL 143 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAGLKEVTL 143 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEEEEECTTCGGGGSCCTTCCEEEE
T ss_pred CCEEEEEECCeEEEEEEeeEEEECcccceeeccCCCCCEEEE
Confidence 677777777777777777753 12222223333 45555554
No 17
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=20.82 E-value=57 Score=24.26 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=13.0
Q ss_pred CCCEEEEeCCCCEEEEEEee
Q 039555 45 CNGFTVIDSHGNLVYRVDNY 64 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~ 64 (214)
||.+.|++.++...|+|.+.
T Consensus 78 Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 78 GSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 56666666666666777664
No 18
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=20.66 E-value=46 Score=26.90 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=10.9
Q ss_pred CCCEEEEeCCCCEEEEEEee
Q 039555 45 CNGFTVIDSHGNLVYRVDNY 64 (214)
Q Consensus 45 g~~f~V~D~~G~~vf~V~g~ 64 (214)
||.+.|++.+|...|+|++.
T Consensus 132 GD~I~v~~~~~~~~Y~V~~~ 151 (212)
T 3g66_A 132 GDIFYLHVLDQVLAYQVDQI 151 (212)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeE
Confidence 45555555555555555553
Done!