BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039556
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 185/496 (37%), Positives = 251/496 (50%), Gaps = 65/496 (13%)
Query: 58 LHTTYTPKFLGLKKDAGLWPAQSFCRIEERIFAECSAGNLGPDAYSIFNGALGL------ 111
+ +Y +F+ L +DA SF + + + SAGN GP S+ NG+ +
Sbjct: 169 ISISYGYRFIPLYEDA--ISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226
Query: 112 --QRELAVRITLGNRELTVTGQSVYPENLFV------------------------SKERK 145
R A +TLGN L + G S++P FV + E
Sbjct: 227 HTDRTFAGTLTLGN-GLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENT 285
Query: 146 YIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQYLSSSNFSMPLVTVNPKDWELVK 205
+ C D N Q + + R A+F S+ S+ F P V VN K+ + V
Sbjct: 286 IVIC----DDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVI 341
Query: 206 KYIINTENASVSIKFQITKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWV 265
Y+ N+ + +I FQ T L TK AP VA S+RGP I KPDILAPGV ILAA+
Sbjct: 342 NYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYP 401
Query: 266 PNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYL 325
PN I + L +DY L SGTS++ PH AGIAA+LKA +WS +AIRSAMMTTA
Sbjct: 402 PNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADP 461
Query: 326 LDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMDPGLVYDIEVQDYINYLCALNYTSLQI 385
LDN I D + TPLD G+GHV+PN+A+DPGLVYD QDY+N LC+LN+T Q
Sbjct: 462 LDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQF 521
Query: 386 RVLTGTS-NFTCENANLDLNYPSFMIILNNTKSASFT-----FKWVLTNVDDTSSVNTAA 439
+ + +S + C N + DLNYPSF+ + + +FT FK +TNV ++ A
Sbjct: 522 KTIARSSASHNCSNPSADLNYPSFIALY--SIEGNFTLLEQKFKRTVTNVGKGAATYKAK 579
Query: 440 VKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDLGITVSPKCNYLG------NFGYLTW 493
+KAP + V P+ F K K + LT+ Y+G N G +TW
Sbjct: 580 LKAPKNSTISVSPQILVFKNKNEKQSYTLTI------------RYIGDEGQSRNVGSITW 627
Query: 494 HENIGKHMVRSPIVSA 509
E G H VRSPIV++
Sbjct: 628 VEQNGNHSVRSPIVTS 643
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 227/473 (47%), Gaps = 84/473 (17%)
Query: 80 SFCRIEERIFAECSAGNLGPDAYSIFN--------GALGLQRELAVRITLGN-------- 123
SF +E I SAGN GP+ ++ + A + R+ ++ +GN
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 124 --------------RELTVTG-----------QSVYPENLFVSKERKYIFCAYDYDGNVT 158
R++ TG +SV P L + K + C +
Sbjct: 241 INTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLL----KGKIVVCEASFG---- 292
Query: 159 VYQQFKEVQRIGAAGAVFSSDPRQYLSSSNFSMPLVTVNPKDWELVKKYIINTENASVSI 218
++ FK + GAAG + +S+ R Y S + +P ++P D +YI + + +I
Sbjct: 293 PHEFFKSLD--GAAGVLMTSNTRDYADS--YPLPSSVLDPNDLLATLRYIYSIRSPGATI 348
Query: 219 KFQITKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDY 278
F+ T + AP V FSSRGP+ ++KPDI PGV+ILAAW PV IR+ +
Sbjct: 349 -FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRR-NT 406
Query: 279 LFSDYALMSGTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNANSTITDIRI 338
LF+ ++SGTS+SCPH+ GIA +K WS AAI+SA+MTTA ++ + +
Sbjct: 407 LFN---IISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE--- 460
Query: 339 GVSGTPLDFGSGHVNPNKAMDPGLVYDIEVQDYINYLCALNYTSLQIRVLTGTSNFTCEN 398
+GSGHVNP KA+ PGLVYD DY+ +LC Y + +R +TG + C +
Sbjct: 461 ------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYS-ACTS 513
Query: 399 ANL----DLNYPSFMIILNNTKSASFTFKWVLTNVDDTSSVNTAAVKAPAGMKVVVQPET 454
N DLNYPSF + ++ +++ + F LT+V +S A + AP G+ + V P
Sbjct: 514 GNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNV 573
Query: 455 ATFDRKYSKAEFNLTLSIDL-GITVSPKCNYLGNFGYLTWHENIGKHMVRSPI 506
+F+ + F LT+ + G VS L W + G H VRSPI
Sbjct: 574 LSFNGLGDRKSFTLTVRGSIKGFVVSAS---------LVWSD--GVHYVRSPI 615
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 20/123 (16%)
Query: 236 FSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPV-KPIRKSDYLFSDYALMSGTSISCP 294
FSSRGP + LKP+++APG I+AA + +PI +DY Y GT+++ P
Sbjct: 312 FSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPI--NDY----YTAAPGTAMATP 363
Query: 295 HVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNP 354
HVAGIAALL W+ +++A++ TA ++ I DI +G+G VN
Sbjct: 364 HVAGIAALLLQAHPSWTPDKVKTALIETADIVK--PDEIADIA---------YGAGRVNA 412
Query: 355 NKA 357
KA
Sbjct: 413 YKA 415
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GTS++ PHVAG+AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTSMATPHVAGVAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L N N
Sbjct: 237 NVQIRNHLKNTATGLGNTN 255
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GTS++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GTS++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GTS++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GTS++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GTS++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 24/92 (26%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
++A FS+ G W+ D++APGVDI++ NR YA MSGTS+
Sbjct: 190 RLASFSNYGT-----WV---DVVAPGVDIVSTITGNR--------------YAYMSGTSM 227
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTA 323
+ PHVAG+AALL + R+ + IR A+ TA
Sbjct: 228 ASPHVAGLAALLASQGRN--NIEIRQAIEQTA 257
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GT ++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GT ++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GT ++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI+APGV++ +S Y S YA ++GT ++ PHVAG AAL+K WS
Sbjct: 191 DIVAPGVNV--------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWS 236
Query: 312 SAAIRSAMMTTAYLLDNAN 330
+ IR+ + TA L + N
Sbjct: 237 NVQIRNHLKNTATSLGSTN 255
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 23/98 (23%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIXSTLPGNK--------------YGAYSGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMM-TTAYLLDN 328
+ PHVAG AAL+ + +W++ +RS++ TT YL D+
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS 260
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSICSTLPGNK--------------YGAKSGTSM 213
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L N+
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSICSTLPGNK--------------YGAKSGTSM 213
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 24/116 (20%)
Query: 191 MPLVTVNPKDWELVKKYIINTENASVSIKFQITK--LGTKRAPQVAYFSSRGPDSQPPWI 248
MP ++ KD L+K +N+ +I F T L T +++ FSS G +
Sbjct: 337 MPAAFISRKDGLLLK------DNSKKTITFNATPKVLPTASDTKLSRFSSWGLTAD--GN 388
Query: 249 LKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLK 304
+KPDI APG DIL++ N+ YA +SGTS+S P VAGI LL+
Sbjct: 389 IKPDIAAPGQDILSSVANNK--------------YAKLSGTSMSAPLVAGIMGLLQ 430
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 26/102 (25%)
Query: 228 KRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMS 287
+RAP FSS GP+ D++APGV I S Y +S
Sbjct: 176 QRAP----FSSVGPEL--------DVMAPGVSIC--------------STLPGGKYGALS 209
Query: 288 GTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
GTS++ PHVAG AAL+ + +W++ +RS++ TA L ++
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS 251
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I++ N+ Y SGT++
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSIVSTLPGNK--------------YGAKSGTAM 213
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSICSTLPGNK--------------YGAKSGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSICSTLPGNK--------------YGAKSGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I++ N+ Y SGT++
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSIVSTLPGNK--------------YGAKSGTAM 213
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIXSTLPGNK--------------YGAYSGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAKSGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 26/102 (25%)
Query: 228 KRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMS 287
+RAP FSS GP+ D++APGV I S Y +S
Sbjct: 176 QRAP----FSSVGPEL--------DVMAPGVSIC--------------STLPGGKYGALS 209
Query: 288 GTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
GT+++ PHVAG AAL+ + +W++ +RS++ TA L ++
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS 251
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS 260
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS 260
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGT +
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSICSTLPGNK--------------YGAKSGTXM 213
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGT +
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAKSGTXM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GTS+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTSM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGT +
Sbjct: 173 QRASFSSVGPEL--------DVMAPGVSIWSTLPGNK--------------YGAKSGTXM 210
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 211 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 248
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGT +
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYSGTXM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 189 FSMPLVTVNPKDWELVKKYIINTENASVSIKFQITK--LGTKRAPQVAYFSSRGPDSQPP 246
+P V P + K ++ +N +I F T L T +++ FSS G +
Sbjct: 320 IELPNVDQXPAAFISRKDGLLLKDNPQKTITFNATPKVLPTASGTKLSRFSSWGLTAD-- 377
Query: 247 WILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL-KA 305
+KPDI APG DIL++ N+ YA +SGTS S P VAGI LL K
Sbjct: 378 GNIKPDIAAPGQDILSSVANNK--------------YAKLSGTSXSAPLVAGIXGLLQKQ 423
Query: 306 MQRDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKA 357
+ + + +L ++ + + D +P G+G V+ KA
Sbjct: 424 YETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y SGT +
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYSGTXM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GTS
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTSX 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GT +
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTXM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS GP+ D++APGV I + N+ Y +GT +
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGNK--------------YGAYNGTXM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + +W++ +RS++ T L ++
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 30/107 (28%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
D+ APG I S Y S YA +SGTS++ PHVAG+A LL + R S
Sbjct: 201 DVAAPGSSIY--------------STYPTSTYASLSGTSMATPHVAGVAGLLASQGR--S 244
Query: 312 SAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAM 358
++ IR+A+ TA +SGT + G VN KA+
Sbjct: 245 ASNIRAAIENTADK--------------ISGTGTYWAKGRVNAYKAV 277
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLF-----SDYALM 286
VA FSSRGP +KPD++APG IL+A P D F S YA M
Sbjct: 201 HVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAP-------DSSFWANHDSKYAYM 251
Query: 287 SGTSISCPHVAGIAALLK 304
GTS++ P VAG A L+
Sbjct: 252 GGTSMATPIVAGNVAQLR 269
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 30/107 (28%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
D+ APG +W+ S Y S YA +SGTS++ PHVAG+A LL + R S
Sbjct: 201 DVAAPG-----SWI---------YSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--S 244
Query: 312 SAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAM 358
++ IR+A+ TA +SGT + G VN KA+
Sbjct: 245 ASNIRAAIENTADK--------------ISGTGTYWAKGRVNAYKAV 277
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI PG DIL+ W+ +SGTS++ PHVAG+AA L + + +
Sbjct: 200 DIFGPGTDILSTWIGGSTRS--------------ISGTSMATPHVAGLAAYLMTLGKTTA 245
Query: 312 SAAIRSAMMTTAYLLDNAN 330
++A R Y+ D AN
Sbjct: 246 ASACR-------YIADTAN 257
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 230 APQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGT 289
A Q A FSS G + D++APGV I +S Y +GT
Sbjct: 183 ANQRASFSSAGSE--------LDVMAPGVSI--------------QSTLPGGTYGAYNGT 220
Query: 290 SISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
S++ PHVAG AAL+ + W++A +R + +TA L ++
Sbjct: 221 SMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGSS 260
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS G + D++APGV I +S Y +GT +
Sbjct: 185 QRASFSSAGSE--------LDVMAPGVSI--------------QSTLPGGTYGAYNGTCM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + W++A +R + +TA L N+
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 22/98 (22%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSI 291
Q A FSS G + D++APGV I +S Y +GT +
Sbjct: 185 QRASFSSVGSE--------LDVMAPGVSI--------------QSTLPGGTYGAYNGTXM 222
Query: 292 SCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA 329
+ PHVAG AAL+ + W++A +R + +TA L N+
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRD 309
DI+APGV I KS YL S YA +SGT+++ PHVAG AL+ + D
Sbjct: 226 DIVAPGVGI--------------KSTYLDSGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRD 309
DI+APGV I KS YL S YA +SGT+++ PHVAG AL+ + D
Sbjct: 208 DIVAPGVGI--------------KSTYLDSGYAELSGTAMAAPHVAGALALIINLAED 251
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRD 309
DI+APGV I KS YL S YA +SGT+++ PHVAG AL+ + D
Sbjct: 226 DIVAPGVGI--------------KSTYLDSGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRD 309
DI+APGV I KS YL S YA +SGT+++ PHVAG AL+ + D
Sbjct: 226 DIVAPGVGI--------------KSTYLDSGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 21/79 (26%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI PG IL+ W+ +SGTS++ PHVAG+AA L + + +
Sbjct: 200 DIFGPGTSILSTWIGGSTRS--------------ISGTSMATPHVAGLAAYLMTLGKTTA 245
Query: 312 SAAIRSAMMTTAYLLDNAN 330
++A R Y+ D AN
Sbjct: 246 ASACR-------YIADTAN 257
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 21/79 (26%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI PG IL+ W+ +SGTS++ PHVAG+AA L + + +
Sbjct: 200 DIFGPGTSILSTWIGGSTRS--------------ISGTSMATPHVAGLAAYLMTLGKTTA 245
Query: 312 SAAIRSAMMTTAYLLDNAN 330
++A R Y+ D AN
Sbjct: 246 ASACR-------YIADTAN 257
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLF-----SDYALM 286
VA FSSRGP +KPD++APG IL+A P D F S YA
Sbjct: 201 HVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAP-------DSSFWANHDSKYAYX 251
Query: 287 SGTSISCPHVAGIAALLK 304
GTS + P VAG A L+
Sbjct: 252 GGTSXATPIVAGNVAQLR 269
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 232 QVAYFSSRG-PDSQPPWILKP---DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMS 287
+VA FSSRG + ++++ +I APG + + W YA +S
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW--------------FDGGYATIS 246
Query: 288 GTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLD 327
GTS++ PH AG+AA + A S+ +R + T A + D
Sbjct: 247 GTSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 11/75 (14%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL----KAMQ 307
D+ APG DIL+ V + +P+ + Y+ M+GTS++ PHV+G+AAL+ ++
Sbjct: 245 DLAAPGQDILST-VDSGTRRPVSDA------YSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 308 RDWSSAAIRSAMMTT 322
++ + A ++ +++T
Sbjct: 298 KNLTPAELKDVLVST 312
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 11/75 (14%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL----KAMQ 307
D+ APG DIL+ V + +P+ + Y+ M+GTS++ PHV+G+AAL+ ++
Sbjct: 245 DLAAPGQDILST-VDSGTRRPVSDA------YSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 308 RDWSSAAIRSAMMTT 322
++ + A ++ +++T
Sbjct: 298 KNLTPAELKDVLVST 312
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 11/75 (14%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL----KAMQ 307
D+ APG DIL+ V + +P+ + Y+ M+GTS++ PHV+G+AAL+ ++
Sbjct: 245 DLAAPGQDILST-VDSGTRRPVSDA------YSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 308 RDWSSAAIRSAMMTT 322
++ + A ++ +++T
Sbjct: 298 KNLTPAELKDVLVST 312
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GTS++ PHVAG AAL+ + + S
Sbjct: 196 EVMAPGAGVY--------------STYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 242 ASQVRNRLSSTATYL 256
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GTS++ PHVAG AAL+ + + S
Sbjct: 196 EVMAPGAGVY--------------STYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 242 ASQVRNRLSSTATYL 256
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GTS++ PHVAG AAL+ + + S
Sbjct: 196 EVMAPGAGVY--------------STYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 242 ASQVRNRLSSTATYL 256
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GTS++ PHVAG AAL+ + + S
Sbjct: 197 EVMAPGAGVY--------------STYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 242
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 243 ASQVRNRLSSTATYL 257
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GTS++ PHVAG AAL+ + + S
Sbjct: 197 EVMAPGAGVY--------------STYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 242
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 243 ASQVRNRLSSTATYL 257
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GTS++ PHVAG AAL+ + + S
Sbjct: 196 EVMAPGAGVY--------------STYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 242 ASQVRNRLSSTATYL 256
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 233 VAYFSSRGPDSQPPWIL--KPDILAPGVDILAA---WVPNRPVKPIRKSDYLFSDYALMS 287
+ Y +S P Q P+++ DI P V + A + + + S+ DY +
Sbjct: 307 IVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYN 366
Query: 288 GTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTA 323
GTS++ PHV+G+A L+ + + S++ +R+A+ TA
Sbjct: 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 250 KPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ-- 307
K ILAPG +IL A +P+R ++GTS++ P + GI+ALL ++Q
Sbjct: 265 KEGILAPGEEILGAQPCTE--EPVR-----------LTGTSMAAPVMTGISALLMSLQVQ 311
Query: 308 --RDWSSAAIRSAMMTTAYLLD 327
+ + A+R+A++ TA D
Sbjct: 312 QGKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 250 KPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ-- 307
K ILAPG +IL A +P+R ++GTS++ P + GI+ALL ++Q
Sbjct: 265 KEGILAPGEEILGAQPCTE--EPVR-----------LTGTSMAAPVMTGISALLMSLQVQ 311
Query: 308 --RDWSSAAIRSAMMTTAYLLD 327
+ + A+R+A++ TA D
Sbjct: 312 QGKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 250 KPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ-- 307
K ILAPG +IL A +P+R ++GTS++ P + GI+ALL ++Q
Sbjct: 247 KEGILAPGEEILGAQPCTE--EPVR-----------LTGTSMAAPVMTGISALLMSLQVQ 293
Query: 308 --RDWSSAAIRSAMMTTAYLLD 327
+ + A+R+A++ TA D
Sbjct: 294 QGKPVDAEAVRTALLKTAIPCD 315
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 14/75 (18%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APG + S Y + YA ++GT ++ PHVAG AAL+ + + S
Sbjct: 196 EVMAPGAGVY--------------STYPTNTYATLNGTXMASPHVAGAAALILSKHPNLS 241
Query: 312 SAAIRSAMMTTAYLL 326
++ +R+ + +TA L
Sbjct: 242 ASQVRNRLSSTATYL 256
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 326
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 327 TPHVSGVVALIQA 339
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 326
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 327 TPHVSGVVALIQA 339
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 326
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 327 TPHVSGVVALIQA 339
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 326
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 327 TPHVSGVVALIQA 339
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 288 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 323
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 324 TPHVSGVVALIQA 336
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ 307
DI APG I + W+ R +SGTS++ PH+AG+AA L ++
Sbjct: 201 DIFAPGTSITSTWIGGRT--------------NTISGTSMATPHIAGLAAYLFGLE 242
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 222 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 257
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 258 TPHVSGVVALIQA 270
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 211 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 246
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 247 TPHVSGVVALIQA 259
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 213 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 248
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 249 TPHVSGVVALIQA 261
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT+++
Sbjct: 222 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTAMA 257
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 258 TPHVSGVVALIQA 270
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 14/72 (19%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
+++APGV + + + N Y ++GTS++ PHVAG AAL+ + S
Sbjct: 196 EVMAPGVSVYSTYPSNT--------------YTSLNGTSMASPHVAGAAALILSKYPTLS 241
Query: 312 SAAIRSAMMTTA 323
++ +R+ + +TA
Sbjct: 242 ASQVRNRLSSTA 253
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 247 WILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAAL 302
W D+ APG I +AW Y +SGTS++ PHVAG+AAL
Sbjct: 191 WGSCVDLFAPGSQIKSAWYD--------------GGYKTISGTSMATPHVAGVAAL 232
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT ++
Sbjct: 211 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTXMA 246
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 247 TPHVSGVVALIQA 259
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 169 IGAAGAVFSSDPRQYLSSSNFSMPLVTVNPKDWELVKKYIINTENASVSIKFQITKLGTK 228
+G G + R ++N +V + + + ++ N +S+ K K
Sbjct: 177 LGGGGGCSQNSQRMIDKTTNLGALIVIAAGNENQDASRTWPSSCNNVLSVGATTPK--GK 234
Query: 229 RAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSG 288
RAP FS+ G + + APG +IL+ + P+R S Y + +G
Sbjct: 235 RAP----FSNYG--------ARVHLAAPGTNILST-IDVGQAGPVRSS------YGMKAG 275
Query: 289 TSISCPHVAGIAALL 303
TS++ PHV+G+AAL+
Sbjct: 276 TSMAAPHVSGVAALV 290
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSIS 292
+A FS+R +P++ APGVDIL S Y Y + GT ++
Sbjct: 211 IASFSNR----------QPEVSAPGVDIL--------------STYPDDSYETLMGTCMA 246
Query: 293 CPHVAGIAALLKA 305
PHV+G+ AL++A
Sbjct: 247 TPHVSGVVALIQA 259
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYAL--MSGTSISCPHVAGIAALLKAMQRD 309
D+ APG I +AW SD A ++GTS++ PHVAG+AAL
Sbjct: 196 DLFAPGASIPSAW--------------YTSDTATQTLNGTSMATPHVAGVAALYLEQNPS 241
Query: 310 WSSAAIRSAMMTTA 323
+ A++ SA++ A
Sbjct: 242 ATPASVASAILNGA 255
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 253 ILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL 303
+ APG +IL+ + P+R S Y + +GTS++ PHV+G+AAL+
Sbjct: 247 LAAPGTNILST-IDVGQAGPVRSS------YGMKAGTSMAAPHVSGVAALV 290
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 232 QVAYFSSRG-PDSQPPWILKP---DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMS 287
+VA +SSRG + ++++ +I APG + + W Y +S
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW--------------YNGGYNTIS 247
Query: 288 GTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLD 327
GTS++ PHV+G+AA + A S+ +RS + A +D
Sbjct: 248 GTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311
DI APG I ++W + +SGTS++ PHVAG+AAL + S
Sbjct: 198 DIYAPGSSITSSWYTSNSATNT------------ISGTSMASPHVAGVAALYLDENPNLS 245
Query: 312 SAAIRSAMMTTAYLLDNANSTITDIRIG 339
A + + + T A +TD + G
Sbjct: 246 PAQVTNLLKTRATA-----DKVTDAKTG 268
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 252 DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ 307
DI APG +IL+ W+ +SGTS++ PH+ G+ A L ++
Sbjct: 203 DIFAPGSNILSTWIGGTT--------------NTISGTSMATPHIVGLGAYLAGLE 244
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 232 QVAYFSSRG-PDSQPPWILKP---DILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMS 287
+VA +SSRG + ++++ +I APG + + W Y +S
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW--------------YNGGYNTIS 247
Query: 288 GTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLD 327
GT ++ PHV+G+AA + A S+ +RS + A +D
Sbjct: 248 GTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 250 KPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ 307
K ILAPG DIL A PN IR +SGTS + P V+G+AALL ++Q
Sbjct: 198 KQGILAPGKDILGAK-PNGGT--IR-----------LSGTSFATPIVSGVAALLLSLQ 241
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 253 ILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ 307
ILAPG DIL A KP ++ L SGTS + P V+G+AALL + Q
Sbjct: 198 ILAPGEDILGA-------KPGGGTERL-------SGTSFATPIVSGVAALLLSEQ 238
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 278 YLFSDYALMSGTSISCPHVAGIAAL----LKAMQRDWSSAAIRSAMMTTAYLL 326
+ S L +GTS + PHVAG AL LK ++S +I+ A+ TA L
Sbjct: 450 FTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL 502
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 253 ILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ 307
ILAPG DIL A KP ++ L SGTS + P V+G+AALL + Q
Sbjct: 207 ILAPGEDILGA-------KPGGGTERL-------SGTSFATPIVSGVAALLLSEQ 247
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 253 ILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ 307
ILAPG DIL A KP ++ L SGT+ + P V+G+AALL + Q
Sbjct: 188 ILAPGEDILGA-------KPGGGTERL-------SGTAFATPIVSGVAALLLSEQ 228
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 340 VSGTPLDFGSGHVNPNKAMDPGLVYDIEVQD 370
+SGT GSG V MD G YD++V++
Sbjct: 121 ISGTAFSVGSGSVYAYGVMDRGYSYDLKVEE 151
>pdb|1E1D|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris
Length = 553
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 255 APGVDILAAWVPNRPVKPIR-------KSDYLFSDYALMSG---TSISCPHVAGIAALLK 304
A V ILA N V+ +R K ++++A + G T I + +A+ K
Sbjct: 131 AKSVGILA--TENEDVRSLRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTTK 188
Query: 305 AMQRDWSSAAI---RSAMMTTAYLLDNANST------ITDIRIGVSGTPLDFGSGH 351
+ D A + R +TT LLD AN+T IT + IGV P SGH
Sbjct: 189 DLSVDEMVALVMKGRRMAVTTMALLDEANTTTYGNPEITQVNIGVGKNPGILISGH 244
>pdb|1E2U|A Chain A, Low Temperature Stucture Of Hybrid Cluster Protein From
Desulfovibrio Vulgaris To 1.6a
pdb|1E9V|A Chain A, Xenon Bound In Hydrophobic Channel Of Hybrid Cluster
Protein From Desulfovibrio Vulgaris
pdb|1W9M|A Chain A, As-Isolated Hybrid Cluster Protein From Desulfovibrio
Vulgaris X-Ray Structure At 1.35a Resolution Using Iron
Anomalous Signal
Length = 553
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 255 APGVDILAAWVPNRPVKPIR-------KSDYLFSDYALMSG---TSISCPHVAGIAALLK 304
A V ILA N V+ +R K ++++A + G T I + +A+ K
Sbjct: 131 AKSVGILA--TENEDVRSLRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTTK 188
Query: 305 AMQRDWSSAAIRSA---MMTTAYLLDNANST------ITDIRIGVSGTPLDFGSGH 351
+ D A + A +TT LLD AN+T IT + IGV P SGH
Sbjct: 189 DLSVDEMVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNIGVGKNPGILISGH 244
>pdb|1GNT|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris. X-Ray
Structure At 1.25a Resolution Using Synchrotron
Radiation.
pdb|1OA1|A Chain A, Reduced Hybrid Cluster Protein (Hcp) From Desulfovibrio
Vulgaris Hildenborough Structure At 1.55a Resolution
Using Synchrotron Radiation
Length = 553
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 255 APGVDILAAWVPNRPVKPIR-------KSDYLFSDYALMSG---TSISCPHVAGIAALLK 304
A V ILA N V+ +R K ++++A + G T I + +A+ K
Sbjct: 131 AKSVGILA--TENEDVRSLRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTTK 188
Query: 305 AMQRDWSSAAIRSA---MMTTAYLLDNANST------ITDIRIGVSGTPLDFGSGH 351
+ D A + A +TT LLD AN+T IT + IGV P SGH
Sbjct: 189 DLSVDEMVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNIGVGKNPGILISGH 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,888,368
Number of Sequences: 62578
Number of extensions: 665452
Number of successful extensions: 1700
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 117
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)