Query 039556
Match_columns 515
No_of_seqs 334 out of 2708
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1153 Subtilisin-related pro 99.9 1.6E-21 3.4E-26 199.4 11.2 263 25-324 145-461 (501)
2 cd05562 Peptidases_S53_like Pe 99.8 2E-20 4.3E-25 188.6 11.6 99 233-359 175-274 (275)
3 cd07475 Peptidases_S8_C5a_Pept 99.8 1.9E-18 4E-23 179.5 13.4 110 228-359 229-346 (346)
4 cd07497 Peptidases_S8_14 Pepti 99.8 2.3E-18 5E-23 176.4 13.2 89 229-323 217-311 (311)
5 cd07474 Peptidases_S8_subtilis 99.8 5E-18 1.1E-22 172.2 15.1 108 229-357 188-295 (295)
6 cd05561 Peptidases_S8_4 Peptid 99.8 3.2E-18 7E-23 169.2 12.1 90 226-350 150-239 (239)
7 cd07478 Peptidases_S8_CspA-lik 99.7 2.6E-18 5.7E-23 184.6 9.7 94 230-350 356-455 (455)
8 PTZ00262 subtilisin-like prote 99.7 5.6E-18 1.2E-22 184.2 11.4 98 233-364 521-618 (639)
9 cd07479 Peptidases_S8_SKI-1_li 99.7 1.2E-17 2.6E-22 166.7 12.0 88 225-326 158-253 (255)
10 cd07493 Peptidases_S8_9 Peptid 99.7 3E-17 6.6E-22 164.0 12.0 84 225-324 178-261 (261)
11 cd07489 Peptidases_S8_5 Peptid 99.7 4.4E-17 9.5E-22 167.1 13.4 111 234-361 189-300 (312)
12 cd07481 Peptidases_S8_Bacillop 99.7 4.3E-17 9.4E-22 163.2 12.4 139 145-324 121-264 (264)
13 cd04857 Peptidases_S8_Tripepti 99.7 2.7E-17 5.8E-22 173.0 8.1 83 230-326 326-412 (412)
14 cd07487 Peptidases_S8_1 Peptid 99.7 6.2E-16 1.3E-20 154.0 12.6 86 232-324 179-264 (264)
15 cd07476 Peptidases_S8_thiazoli 99.6 7.6E-16 1.7E-20 154.7 12.0 84 226-328 167-254 (267)
16 cd07483 Peptidases_S8_Subtilis 99.6 8.2E-16 1.8E-20 156.4 12.1 72 232-324 220-291 (291)
17 cd04843 Peptidases_S8_11 Pepti 99.6 1.9E-15 4.2E-20 152.6 13.2 81 232-324 192-277 (277)
18 cd04847 Peptidases_S8_Subtilis 99.6 2.8E-16 6.1E-21 159.5 7.2 87 235-324 200-291 (291)
19 PF00082 Peptidase_S8: Subtila 99.6 1.3E-16 2.8E-21 160.2 4.1 112 227-359 171-282 (282)
20 cd04077 Peptidases_S8_PCSK9_Pr 99.6 2.7E-15 5.8E-20 149.3 11.8 82 224-325 174-255 (255)
21 KOG1114 Tripeptidyl peptidase 99.6 8.8E-15 1.9E-19 160.2 14.2 100 233-359 454-557 (1304)
22 cd07490 Peptidases_S8_6 Peptid 99.6 1.2E-14 2.5E-19 144.4 12.0 88 226-324 157-254 (254)
23 cd07498 Peptidases_S8_15 Pepti 99.6 1E-14 2.3E-19 143.8 10.8 85 225-322 158-242 (242)
24 cd07496 Peptidases_S8_13 Pepti 99.6 1.3E-14 2.8E-19 147.0 11.6 145 144-322 138-285 (285)
25 cd07494 Peptidases_S8_10 Pepti 99.6 2.5E-14 5.4E-19 146.0 13.7 77 245-327 194-286 (298)
26 cd07485 Peptidases_S8_Fervidol 99.6 1.6E-14 3.4E-19 145.5 10.9 82 225-322 190-273 (273)
27 cd04842 Peptidases_S8_Kp43_pro 99.5 3.3E-14 7.1E-19 144.0 12.4 87 231-324 199-293 (293)
28 cd07473 Peptidases_S8_Subtilis 99.5 3.2E-14 7E-19 141.6 11.9 137 144-324 121-259 (259)
29 cd07477 Peptidases_S8_Subtilis 99.5 2.9E-14 6.4E-19 139.1 11.4 132 144-322 97-229 (229)
30 cd07484 Peptidases_S8_Thermita 99.5 4.9E-14 1.1E-18 140.5 11.9 79 225-326 181-259 (260)
31 cd04852 Peptidases_S8_3 Peptid 99.5 3.5E-14 7.5E-19 145.4 10.9 72 249-324 236-307 (307)
32 cd07480 Peptidases_S8_12 Pepti 99.5 1.5E-13 3.2E-18 140.1 12.4 102 229-355 195-296 (297)
33 cd04059 Peptidases_S8_Protein_ 99.5 1.1E-13 2.4E-18 140.6 9.7 81 225-324 210-297 (297)
34 cd07488 Peptidases_S8_2 Peptid 99.5 3.3E-13 7.2E-18 134.1 11.8 74 233-322 167-246 (247)
35 cd07492 Peptidases_S8_8 Peptid 99.5 3.3E-13 7.1E-18 131.5 11.2 61 250-324 162-222 (222)
36 cd07482 Peptidases_S8_Lantibio 99.4 5.9E-13 1.3E-17 134.8 10.6 91 224-322 194-294 (294)
37 cd04848 Peptidases_S8_Autotran 99.4 7.4E-13 1.6E-17 131.4 10.9 84 224-324 182-267 (267)
38 cd07491 Peptidases_S8_7 Peptid 99.3 6.1E-12 1.3E-16 125.1 9.7 63 225-306 167-229 (247)
39 KOG4266 Subtilisin kexin isozy 99.2 8.5E-12 1.8E-16 132.0 6.7 163 144-359 290-465 (1033)
40 cd02133 PA_C5a_like PA_C5a_lik 99.2 2.2E-11 4.8E-16 111.1 8.4 94 142-243 46-142 (143)
41 cd00306 Peptidases_S8_S53 Pept 99.2 2.1E-10 4.5E-15 110.9 11.1 76 227-322 165-241 (241)
42 cd02120 PA_subtilisin_like PA_ 99.0 1.5E-09 3.3E-14 96.3 9.8 95 119-217 2-125 (126)
43 PF05922 Inhibitor_I9: Peptida 98.9 2.1E-09 4.5E-14 88.0 5.2 46 14-59 37-82 (82)
44 PF06280 DUF1034: Fn3-like dom 98.7 1.9E-07 4.2E-12 81.5 11.0 86 418-507 8-112 (112)
45 PF02225 PA: PA domain; Inter 98.6 6.5E-08 1.4E-12 82.2 6.5 64 142-208 32-101 (101)
46 cd02127 PA_hPAP21_like PA_hPAP 98.5 3.9E-07 8.4E-12 80.5 7.9 73 143-218 34-116 (118)
47 cd04818 PA_subtilisin_1 PA_sub 98.5 3.4E-07 7.3E-12 80.7 7.2 70 142-214 39-114 (118)
48 cd04816 PA_SaNapH_like PA_SaNa 98.4 5.1E-07 1.1E-11 80.1 7.1 69 142-213 42-117 (122)
49 COG1404 AprE Subtilisin-like s 98.4 1.7E-06 3.8E-11 92.4 12.6 80 228-325 313-398 (508)
50 cd02122 PA_GRAIL_like PA _GRAI 98.4 6.7E-07 1.5E-11 81.1 7.7 70 143-215 60-135 (138)
51 cd02126 PA_EDEM3_like PA_EDEM3 98.4 7.2E-07 1.6E-11 79.7 7.1 69 143-214 40-122 (126)
52 cd00538 PA PA: Protease-associ 98.4 8E-07 1.7E-11 78.4 7.4 68 143-213 46-121 (126)
53 cd02129 PA_hSPPL_like PA_hSPPL 98.4 7.1E-07 1.5E-11 78.8 6.9 65 143-210 44-114 (120)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.4 9E-07 1.9E-11 78.5 7.4 70 142-214 43-118 (122)
55 cd02125 PA_VSR PA_VSR: Proteas 98.4 9.2E-07 2E-11 79.1 7.2 68 143-213 42-122 (127)
56 cd02132 PA_GO-like PA_GO-like: 98.4 9.4E-07 2E-11 80.3 7.3 70 141-213 57-134 (139)
57 cd04817 PA_VapT_like PA_VapT_l 98.3 1.6E-06 3.5E-11 78.5 6.3 67 142-211 55-134 (139)
58 cd02123 PA_C_RZF_like PA_C-RZF 98.2 4.4E-06 9.4E-11 77.2 6.9 68 143-213 67-142 (153)
59 cd04813 PA_1 PA_1: Protease-as 98.1 4.9E-06 1.1E-10 73.4 6.4 64 143-209 39-110 (117)
60 cd02124 PA_PoS1_like PA_PoS1_l 98.1 6.4E-06 1.4E-10 73.9 7.2 67 143-213 55-124 (129)
61 cd04819 PA_2 PA_2: Protease-as 97.8 6.5E-05 1.4E-09 67.1 7.8 68 142-212 43-121 (127)
62 cd04056 Peptidases_S53 Peptida 97.6 0.00024 5.2E-09 74.7 10.0 48 246-308 249-299 (361)
63 cd04815 PA_M28_2 PA_M28_2: Pro 97.2 0.0013 2.7E-08 59.4 7.3 71 141-213 37-129 (134)
64 cd02128 PA_TfR PA_TfR: Proteas 96.9 0.0018 3.9E-08 61.4 6.2 67 142-211 54-156 (183)
65 PF14874 PapD-like: Flagellar- 96.7 0.047 1E-06 46.3 12.7 81 418-509 20-100 (102)
66 KOG2442 Uncharacterized conser 95.8 0.016 3.4E-07 61.6 6.1 68 142-212 94-169 (541)
67 PF10633 NPCBM_assoc: NPCBM-as 95.3 0.082 1.8E-06 42.8 7.4 58 418-475 5-63 (78)
68 cd04822 PA_M28_1_3 PA_M28_1_3: 94.0 0.13 2.8E-06 47.4 6.2 62 142-206 46-130 (151)
69 cd04814 PA_M28_1 PA_M28_1: Pro 93.8 0.068 1.5E-06 48.7 3.9 34 143-179 47-98 (142)
70 KOG4628 Predicted E3 ubiquitin 93.6 0.091 2E-06 54.5 4.9 64 144-210 80-149 (348)
71 cd04820 PA_M28_1_1 PA_M28_1_1: 93.5 0.088 1.9E-06 47.7 4.1 35 142-179 48-94 (137)
72 cd02131 PA_hNAALADL2_like PA_h 93.4 0.095 2E-06 48.1 4.0 35 142-179 39-73 (153)
73 cd02121 PA_GCPII_like PA_GCPII 93.0 0.11 2.4E-06 50.9 4.1 35 142-179 70-104 (220)
74 PF11614 FixG_C: IG-like fold 92.2 0.84 1.8E-05 39.9 8.4 56 419-475 32-87 (118)
75 KOG3920 Uncharacterized conser 91.8 0.16 3.6E-06 46.4 3.4 74 144-220 88-173 (193)
76 PF06030 DUF916: Bacterial pro 89.0 6.5 0.00014 34.8 11.0 68 418-493 27-118 (121)
77 KOG3526 Subtilisin-like propro 88.9 0.091 2E-06 54.2 -0.9 76 283-358 378-456 (629)
78 PF00345 PapD_N: Pili and flag 84.7 9.7 0.00021 33.2 9.8 52 419-472 15-73 (122)
79 COG1470 Predicted membrane pro 83.1 13 0.00028 40.1 11.4 58 418-475 397-455 (513)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 77.5 2.7 5.8E-05 39.0 3.7 19 160-179 83-101 (157)
81 PF00635 Motile_Sperm: MSP (Ma 74.7 25 0.00054 29.6 8.8 54 418-474 18-71 (109)
82 TIGR02745 ccoG_rdxA_fixG cytoc 74.5 14 0.00029 40.1 8.6 55 419-474 347-401 (434)
83 COG1470 Predicted membrane pro 65.4 1E+02 0.0023 33.5 12.5 57 418-475 284-346 (513)
84 PF07610 DUF1573: Protein of u 63.7 24 0.00052 25.3 5.4 44 424-470 2-45 (45)
85 PF07718 Coatamer_beta_C: Coat 63.6 63 0.0014 29.4 9.1 67 419-493 70-137 (140)
86 smart00635 BID_2 Bacterial Ig- 62.4 21 0.00046 28.8 5.5 37 447-494 4-40 (81)
87 PF07705 CARDB: CARDB; InterP 60.7 41 0.0009 27.4 7.2 54 418-474 19-73 (101)
88 COG4934 Predicted protease [Po 55.9 11 0.00025 45.0 3.8 26 282-307 472-497 (1174)
89 PF00927 Transglut_C: Transglu 53.9 92 0.002 26.3 8.4 55 418-474 15-78 (107)
90 PLN03080 Probable beta-xylosid 51.2 67 0.0014 37.6 9.1 53 419-472 685-744 (779)
91 cd07479 Peptidases_S8_SKI-1_li 44.6 12 0.00027 37.1 1.7 25 84-108 125-149 (255)
92 cd07497 Peptidases_S8_14 Pepti 43.5 14 0.0003 38.1 1.8 25 84-108 165-189 (311)
93 cd08523 Reeler_cohesin_like Do 43.4 1.4E+02 0.003 26.7 7.9 20 455-474 75-94 (124)
94 PRK15308 putative fimbrial pro 43.0 99 0.0021 30.7 7.6 53 419-472 32-100 (234)
95 PRK15098 beta-D-glucoside gluc 41.6 79 0.0017 36.9 7.8 71 402-474 645-729 (765)
96 PF12690 BsuPI: Intracellular 39.0 1.6E+02 0.0036 24.0 7.2 21 453-474 52-72 (82)
97 KOG3525 Subtilisin-like propro 34.5 22 0.00047 38.5 1.7 74 285-359 251-324 (431)
98 PF02845 CUE: CUE domain; Int 33.3 41 0.0009 23.6 2.4 23 300-322 5-27 (42)
99 PRK15208 long polar fimbrial c 33.0 3.2E+02 0.0068 26.8 9.5 53 418-472 35-92 (228)
100 cd04857 Peptidases_S8_Tripepti 32.5 24 0.00052 38.0 1.6 24 84-107 273-296 (412)
101 PF04744 Monooxygenase_B: Mono 32.4 1E+02 0.0022 32.5 6.0 52 418-471 263-334 (381)
102 TIGR00845 caca sodium/calcium 29.8 3.8E+02 0.0082 32.0 10.7 25 299-323 322-346 (928)
103 cd00407 Urease_beta Urease bet 28.5 1.3E+02 0.0028 25.8 5.0 50 418-468 18-81 (101)
104 PRK09918 putative fimbrial cha 28.4 2.1E+02 0.0045 28.2 7.3 52 418-472 38-94 (230)
105 cd04852 Peptidases_S8_3 Peptid 27.5 33 0.00073 34.8 1.6 21 84-104 201-221 (307)
106 PRK13203 ureB urease subunit b 26.2 1.3E+02 0.0029 25.8 4.6 49 418-468 18-81 (102)
107 PRK13202 ureB urease subunit b 26.0 1.1E+02 0.0025 26.3 4.2 48 420-468 21-82 (104)
108 PF04255 DUF433: Protein of un 25.2 59 0.0013 24.5 2.2 40 281-320 9-54 (56)
109 TIGR00192 urease_beta urease, 25.0 1.2E+02 0.0025 26.1 4.1 50 418-468 18-81 (101)
110 KOG4266 Subtilisin kexin isozy 24.0 30 0.00065 38.7 0.5 24 85-108 318-341 (1033)
111 PF08260 Kinin: Insect kinin p 23.9 36 0.00077 15.7 0.4 6 235-240 3-8 (8)
112 PF05753 TRAP_beta: Translocon 23.2 5.3E+02 0.011 24.4 8.7 55 418-474 38-99 (181)
113 PF02368 Big_2: Bacterial Ig-l 23.2 56 0.0012 26.0 1.8 27 447-474 4-30 (79)
114 cd07491 Peptidases_S8_7 Peptid 22.5 44 0.00095 33.1 1.3 18 84-101 133-150 (247)
115 cd05561 Peptidases_S8_4 Peptid 21.9 42 0.00092 32.9 1.1 17 84-100 117-133 (239)
116 PF13598 DUF4139: Domain of un 21.9 4.4E+02 0.0095 26.7 8.6 20 420-439 244-263 (317)
117 PF01345 DUF11: Domain of unkn 21.4 2.2E+02 0.0049 22.2 5.1 31 418-448 41-72 (76)
118 cd04847 Peptidases_S8_Subtilis 21.4 55 0.0012 33.0 1.8 19 84-102 133-151 (291)
119 PRK13205 ureB urease subunit b 20.9 2E+02 0.0044 26.5 5.0 51 418-469 18-82 (162)
120 COG0832 UreB Urea amidohydrola 20.8 2.3E+02 0.005 24.3 5.0 50 418-468 18-81 (106)
121 PRK13201 ureB urease subunit b 20.4 2.2E+02 0.0048 25.7 5.0 51 418-469 18-82 (136)
No 1
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-21 Score=199.41 Aligned_cols=263 Identities=18% Similarity=0.186 Sum_probs=171.0
Q ss_pred ccceEEeecCHHHHHhhcCCCCeEEEEeCccccccc-----cccCcccCcccCCCCCCCC-----ccce-----------
Q 039556 25 VVDGFSAVLSQTHLDQLQKLPGHHATYIETFGHLHT-----TYTPKFLGLKKDAGLWPAQ-----SFCR----------- 83 (515)
Q Consensus 25 ~~~GFaA~lt~~~~~~L~~~p~V~~Ve~D~~~~l~t-----t~s~~~~Gl~~~~g~~~~~-----sfcn----------- 83 (515)
+|+||...++.+-...++.+|-+..||+|+++.... +|...+|||-|.+..-..- -||-
T Consensus 145 ~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaY 224 (501)
T KOG1153|consen 145 VFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAY 224 (501)
T ss_pred hhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEE
Confidence 889999999999999999999999999999998865 8999999999865432211 1121
Q ss_pred -eecceEEeecCCCCCCCCceeeeccccccceeeeEEEecCCeEEEeeeee---cC-CCCCCCc-cceEEEEeecC-CCc
Q 039556 84 -IEERIFAECSAGNLGPDAYSIFNGALGLQRELAVRITLGNRELTVTGQSV---YP-ENLFVSK-ERKYIFCAYDY-DGN 156 (515)
Q Consensus 84 -~~~GI~vv~sAGN~Gp~~~tv~n~a~t~dr~~~~~~~lg~g~~~i~G~s~---~~-~~~~~~~-~GkIvlc~~~~-g~~ 156 (515)
+++||.+-|-. +.+++..+|.-.- .-...++.|||++ ++|.-. |+ .. ..++ .-||+-| +. |.-
T Consensus 225 v~DTGVni~H~d-----FegRa~wGa~i~~-~~~~~D~nGHGTH-~AG~I~sKt~GvAK-~s~lvaVKVl~~--dGsGt~ 294 (501)
T KOG1153|consen 225 VLDTGVNIEHPD-----FEGRAIWGATIPP-KDGDEDCNGHGTH-VAGLIGSKTFGVAK-NSNLVAVKVLRS--DGSGTV 294 (501)
T ss_pred Eecccccccccc-----cccceecccccCC-CCcccccCCCcce-eeeeeecccccccc-ccceEEEEEecc--CCcEeH
Confidence 78888887765 5566666662221 1113467999999 766432 22 11 1111 1455555 32 111
Q ss_pred chhhhhHHHH-------HHhcCceeEEEcC-CCc-cc--------cCCCCccCeeecCchhhHHHHHHHhcCCCceEEEE
Q 039556 157 VTVYQQFKEV-------QRIGAAGAVFSSD-PRQ-YL--------SSSNFSMPLVTVNPKDWELVKKYIINTENASVSIK 219 (515)
Q Consensus 157 ~~~~k~~~~v-------~~aGa~gvi~~n~-~g~-~~--------~~~~~~~P~~~i~~~~g~~l~~~~~s~~~~~~~i~ 219 (515)
+.+.+.++.+ ++++.++-++... .|. .. .......-++..+++.-++|.. |+......|
T Consensus 295 Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~---SPass~~aI- 370 (501)
T KOG1153|consen 295 SDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSAALNMAVNAASERGIHFAVAAGNEHEDACNS---SPASSKKAI- 370 (501)
T ss_pred HHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccHHHHHHHHHHhhcCeEEEEcCCCcchhhhcc---CcccccccE-
Confidence 2222223322 2333444333222 221 11 0112233344455555555543 333333444
Q ss_pred eceeeecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHH
Q 039556 220 FQITKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGI 299 (515)
Q Consensus 220 ~~~t~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~ 299 (515)
|+...+-.+.+|.|||||+|+ ||+|||++|+|+|.+.. ....++||||||+|||||+
T Consensus 371 ---TVGAst~~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~------------~at~ilSGTSMasPhvaG~ 427 (501)
T KOG1153|consen 371 ---TVGASTKNDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN------------NATAILSGTSMASPHVAGL 427 (501)
T ss_pred ---EecccccccchhhhcCcccee--------eeecCchhhhhhhhcCc------------cchheeecccccCcchhhh
Confidence 455567789999999999999 99999999999999854 5678999999999999999
Q ss_pred HHHHHhhCCC---------CCHHHHHHHHHhccc
Q 039556 300 AALLKAMQRD---------WSSAAIRSAMMTTAY 324 (515)
Q Consensus 300 aALl~~~~p~---------~s~~~i~~~L~~tA~ 324 (515)
+|.+++++|. .||.++|..+..-..
T Consensus 428 aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 428 AAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred HHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999982 378888877765544
No 2
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.83 E-value=2e-20 Score=188.63 Aligned_cols=99 Identities=29% Similarity=0.327 Sum_probs=82.8
Q ss_pred eeecCCCCCCCCCCCCCCCceEeCCC-cEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCC
Q 039556 233 VAYFSSRGPDSQPPWILKPDILAPGV-DILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311 (515)
Q Consensus 233 va~fSs~Gp~~~~~~~lKPdi~APG~-~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s 311 (515)
.+.|+++||... ..+||||+|||. ++.+++.+ +.|..++|||||||||||++|||++++|.|+
T Consensus 175 ~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~--------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt 238 (275)
T cd05562 175 FDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDG--------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLT 238 (275)
T ss_pred ccCCcccCcCCC--CCcCCeEEcCCcccccCCCcC--------------CceeecccchHHHHHHHHHHHHHHHhCCCCC
Confidence 455677788764 679999999965 45665544 6899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCC
Q 039556 312 SAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMD 359 (515)
Q Consensus 312 ~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 359 (515)
+++||++|++||+++. .+.....||+|+||+.+|++
T Consensus 239 ~~~v~~~L~~tA~~~~------------~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 239 PADIRDALRSTALDMG------------EPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHhCcccC------------CCCCCCCcCcCcccHHHHhh
Confidence 9999999999998763 22345689999999999986
No 3
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.77 E-value=1.9e-18 Score=179.50 Aligned_cols=110 Identities=35% Similarity=0.463 Sum_probs=92.3
Q ss_pred cCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhh-
Q 039556 228 KRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAM- 306 (515)
Q Consensus 228 ~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~- 306 (515)
...+.++.||+|||... ..+||||+|||.+|+++... +.|..++|||||||||||++|||+|+
T Consensus 229 ~~~~~~~~~S~~G~~~~--~~~~pdi~apG~~i~s~~~~--------------~~~~~~~GTS~AaP~VaG~aALl~~~~ 292 (346)
T cd07475 229 PNGGQMSGFSSWGPTPD--LDLKPDITAPGGNIYSTVND--------------NTYGYMSGTSMASPHVAGASALVKQRL 292 (346)
T ss_pred CCCCccCCCcCCCCCcc--cCcCCeEEeCCCCeEEecCC--------------CceEeeCcHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999875 78999999999999998776 67999999999999999999999998
Q ss_pred ---CCCCCHHH----HHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCC
Q 039556 307 ---QRDWSSAA----IRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMD 359 (515)
Q Consensus 307 ---~p~~s~~~----i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 359 (515)
+|.|++.+ ||.+|++||.+.... ........+..+|+|+||+.+|++
T Consensus 293 ~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 293 KEKYPKLSGEELVDLVKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HhhCCCCCHHHHHHHHHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 78999877 788899999853211 112455677899999999999984
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.77 E-value=2.3e-18 Score=176.43 Aligned_cols=89 Identities=29% Similarity=0.357 Sum_probs=73.6
Q ss_pred CCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCC
Q 039556 229 RAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQR 308 (515)
Q Consensus 229 ~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p 308 (515)
..+.++.||||||+.+ +++||||.|||++|+++.+.......... . ..|..+||||||||||||++|||+|++|
T Consensus 217 ~~~~~~~fSs~Gp~~~--g~~kPdv~ApG~~i~s~~~~~~~~~~~~~---~-~~y~~~sGTSmAaP~VaG~aALll~~~~ 290 (311)
T cd07497 217 GSGDVVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDG---N-EAFDLFGGTSMATPMTAGSAALVISALK 290 (311)
T ss_pred CCCCccccccCCCCcc--cCCCCceeccCcceEeecccCCCCcccCC---C-cceeeecchhhhhHHHHHHHHHHHHHhh
Confidence 3567899999999885 89999999999999998875321000000 1 4799999999999999999999999986
Q ss_pred ------CCCHHHHHHHHHhcc
Q 039556 309 ------DWSSAAIRSAMMTTA 323 (515)
Q Consensus 309 ------~~s~~~i~~~L~~tA 323 (515)
.++|++||.+|++||
T Consensus 291 ~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 291 EKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhcCCCCCCHHHHHHHHHhcC
Confidence 589999999999987
No 5
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.77 E-value=5e-18 Score=172.18 Aligned_cols=108 Identities=46% Similarity=0.655 Sum_probs=88.6
Q ss_pred CCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCC
Q 039556 229 RAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQR 308 (515)
Q Consensus 229 ~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p 308 (515)
.......|+++|+.. ....+||||.|||++|+++++... ..|..++|||||||+|||++||+++++|
T Consensus 188 ~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~~------------~~~~~~~GTS~AaP~vaG~aAll~~~~p 254 (295)
T cd07474 188 EADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGSG------------TGYARMSGTSMAAPHVAGAAALLKQAHP 254 (295)
T ss_pred CCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCCC------------CceEEeccHHHHHHHHHHHHHHHHhhCC
Confidence 345666677766543 247899999999999999988742 5789999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCcccc
Q 039556 309 DWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKA 357 (515)
Q Consensus 309 ~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 357 (515)
.|++++||++|++||.+....+ ....++..+|+|+||+.+|
T Consensus 255 ~l~~~~v~~~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 255 DWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCCHHHHHHHHHhhCcccccCC--------CCcCChhccCcceeccccC
Confidence 9999999999999999875322 1122456899999999987
No 6
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=3.2e-18 Score=169.19 Aligned_cols=90 Identities=30% Similarity=0.384 Sum_probs=78.5
Q ss_pred cccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHh
Q 039556 226 GTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKA 305 (515)
Q Consensus 226 ~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~ 305 (515)
+.+..+.++.||++|+.. ||.|||++|+++.+. +.|..++|||||||||||++|||+|
T Consensus 150 a~~~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~ 207 (239)
T cd05561 150 AVDARGRLYREANRGAHV--------DFAAPGVDVWVAAPG--------------GGYRYVSGTSFAAPFVTAALALLLQ 207 (239)
T ss_pred eecCCCCccccCCCCCcc--------eEEccccceecccCC--------------CCEEEeCCHHHHHHHHHHHHHHHHh
Confidence 345667889999999976 999999999998765 6899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCC
Q 039556 306 MQRDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSG 350 (515)
Q Consensus 306 ~~p~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG 350 (515)
++| ++++||+++|++||..+. .+..+..+|||
T Consensus 208 ~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 208 ASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred cCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 999 999999999999998763 33445678887
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.75 E-value=2.6e-18 Score=184.57 Aligned_cols=94 Identities=35% Similarity=0.456 Sum_probs=82.9
Q ss_pred CCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhC--
Q 039556 230 APQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ-- 307 (515)
Q Consensus 230 ~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~-- 307 (515)
...++.||||||+.. ..+||||+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 356 ~~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~--------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~ 419 (455)
T cd07478 356 NNSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPG--------------GGYTTRSGTSVAAAIVAGACALLLQWGIV 419 (455)
T ss_pred CCcccCccCCCcCCC--CCcCceEEecCCCEEEeecC--------------CcEEeeCcHHHHHHHHHHHHHHHHHhchh
Confidence 456999999999875 88999999999999999986 789999999999999999999999875
Q ss_pred ----CCCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCC
Q 039556 308 ----RDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSG 350 (515)
Q Consensus 308 ----p~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG 350 (515)
|.|++++||.+|+.+|++.. ...++..++|+|
T Consensus 420 ~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 420 RGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred ccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999998764 234566788987
No 8
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.74 E-value=5.6e-18 Score=184.22 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=79.2
Q ss_pred eeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCCH
Q 039556 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWSS 312 (515)
Q Consensus 233 va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s~ 312 (515)
.+.||++|.. ++||+|||++|+++++. +.|..++|||||||||||+||||++.+|+|++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~--------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~ 579 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPK--------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSY 579 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCC--------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCH
Confidence 4556666632 34999999999999987 68999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCCCCccc
Q 039556 313 AAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMDPGLVY 364 (515)
Q Consensus 313 ~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~pglvy 364 (515)
+||+++|+.||.++... ... ..+.|+||+.+|++.-+-+
T Consensus 580 ~qV~~iL~~TA~~l~~~------------~n~-~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 580 EEVIRILKESIVQLPSL------------KNK-VKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHHhCccCCCC------------CCc-cccCcEEcHHHHHHHHHhc
Confidence 99999999999865311 011 2234899999999855443
No 9
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.74 E-value=1.2e-17 Score=166.72 Aligned_cols=88 Identities=31% Similarity=0.370 Sum_probs=76.3
Q ss_pred ecccCCCeeeecCCCCCCCC----CCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQ----PPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIA 300 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~----~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~a 300 (515)
.+.+..+.++.|||+|+... ..+.+||||.|||.+|+++.+. +.|..++|||||||||||++
T Consensus 158 ga~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~--------------~~~~~~sGTS~AaP~VaG~a 223 (255)
T cd07479 158 GGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK--------------GGCRALSGTSVASPVVAGAV 223 (255)
T ss_pred eeeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC--------------CCeEEeccHHHHHHHHHHHH
Confidence 34556788999999997531 1367899999999999988665 67899999999999999999
Q ss_pred HHHHhhCC----CCCHHHHHHHHHhccccc
Q 039556 301 ALLKAMQR----DWSSAAIRSAMMTTAYLL 326 (515)
Q Consensus 301 ALl~~~~p----~~s~~~i~~~L~~tA~~~ 326 (515)
|||++++| .++|++||++|+++|+++
T Consensus 224 All~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 224 ALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred HHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999998 789999999999999876
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.72 E-value=3e-17 Score=163.99 Aligned_cols=84 Identities=32% Similarity=0.492 Sum_probs=75.0
Q ss_pred ecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLK 304 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~ 304 (515)
.+.+..+.++.||++||... ..+||||.|||.+|++.... +.|..++|||||||||||++|||+
T Consensus 178 ga~~~~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~ 241 (261)
T cd07493 178 GAVDANGNKASFSSIGPTAD--GRLKPDVMALGTGIYVINGD--------------GNITYANGTSFSCPLIAGLIACLW 241 (261)
T ss_pred EEeccCCCCCccCCcCCCCC--CCcCCceEecCCCeEEEcCC--------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 34456678999999999874 78999999999999985544 679999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhccc
Q 039556 305 AMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 305 ~~~p~~s~~~i~~~L~~tA~ 324 (515)
+++|+|++.|||++|++||+
T Consensus 242 ~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 242 QAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999984
No 11
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.72 E-value=4.4e-17 Score=167.07 Aligned_cols=111 Identities=38% Similarity=0.525 Sum_probs=93.7
Q ss_pred eecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhC-CCCCH
Q 039556 234 AYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ-RDWSS 312 (515)
Q Consensus 234 a~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~-p~~s~ 312 (515)
+.||+|||+.. ...||||+|||.+|+++++... +.|..++|||||||+|||++||+++++ |.+++
T Consensus 189 ~~~s~~g~~~~--~~~kpdv~ApG~~i~~~~~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~ 254 (312)
T cd07489 189 SYFSSWGPTNE--LYLKPDVAAPGGNILSTYPLAG------------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSP 254 (312)
T ss_pred CCccCCCCCCC--CCcCccEEcCCCCEEEeeeCCC------------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 78999999885 7899999999999999988732 469999999999999999999999999 99999
Q ss_pred HHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCCCC
Q 039556 313 AAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMDPG 361 (515)
Q Consensus 313 ~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~pg 361 (515)
.+|+++|++||.++...+..-. ....++...+|+|+||+.+|+...
T Consensus 255 ~~v~~~l~~ta~~~~~~~~~~~---~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 255 AELRDLLASTAKPLPWSDGTSA---LPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred HHHHHHHHHhCccccccCCCcc---ccCCCCHhhcCcceeeHHHHhcCC
Confidence 9999999999998754321111 112456679999999999999843
No 12
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.71 E-value=4.3e-17 Score=163.23 Aligned_cols=139 Identities=32% Similarity=0.294 Sum_probs=102.2
Q ss_pred eEEEEeecCCCcch-hhhhHHHHHHhcCceeEEEcCCCccccCCC--CccCeeecCchhhHHHHHHHhcCCCceEEEEec
Q 039556 145 KYIFCAYDYDGNVT-VYQQFKEVQRIGAAGAVFSSDPRQYLSSSN--FSMPLVTVNPKDWELVKKYIINTENASVSIKFQ 221 (515)
Q Consensus 145 kIvlc~~~~g~~~~-~~k~~~~v~~aGa~gvi~~n~~g~~~~~~~--~~~P~~~i~~~~g~~l~~~~~s~~~~~~~i~~~ 221 (515)
+|+.| +.|.... .......++.+-..|++++...|+...... ...|+. .+ -.|
T Consensus 121 ~Iin~--S~G~~~~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~----------------~~---~vi--- 176 (264)
T cd07481 121 DVINN--SWGGPSGDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPAN----------------YP---ESF--- 176 (264)
T ss_pred eEEEe--CCCcCCCCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCc----------------CC---ceE---
Confidence 57777 7775543 222133445555678888876444322111 112211 11 122
Q ss_pred eeeecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHH
Q 039556 222 ITKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAA 301 (515)
Q Consensus 222 ~t~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aA 301 (515)
++......+.++.||++||... ..+||||+|||.+|+++++. +.|..++|||||||+|||++|
T Consensus 177 -~Vga~~~~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~s~~~~--------------~~~~~~~GTS~AaP~vaG~aA 239 (264)
T cd07481 177 -AVGATDRNDVLADFSSRGPSTY--GRIKPDISAPGVNIRSAVPG--------------GGYGSSSGTSMAAPHVAGVAA 239 (264)
T ss_pred -EEEecCCCCCCccccCCCCCCC--CCcCceEEECCCCeEEecCC--------------CceEeeCcHHHHHHHHHHHHH
Confidence 2344566788999999999875 78999999999999999887 678999999999999999999
Q ss_pred HHHhhCCC--CCHHHHHHHHHhccc
Q 039556 302 LLKAMQRD--WSSAAIRSAMMTTAY 324 (515)
Q Consensus 302 Ll~~~~p~--~s~~~i~~~L~~tA~ 324 (515)
||+|++|. ++++|||++|++||+
T Consensus 240 ll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 240 LLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999 999999999999985
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.69 E-value=2.7e-17 Score=172.99 Aligned_cols=83 Identities=33% Similarity=0.355 Sum_probs=71.7
Q ss_pred CCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHh----
Q 039556 230 APQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKA---- 305 (515)
Q Consensus 230 ~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~---- 305 (515)
.+.++.||||||+.+ +.+||||+|||++|.++ +.... ..|..|+|||||+|||||++|||++
T Consensus 326 ~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~-p~~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~ 391 (412)
T cd04857 326 PGNQYTWSSRGPTAD--GALGVSISAPGGAIASV-PNWTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKA 391 (412)
T ss_pred CCccccccccCCccc--CCcCceEEeCCCcEEEc-ccCCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhh
Confidence 467899999999985 88999999999999885 22110 5789999999999999999999975
Q ss_pred hCCCCCHHHHHHHHHhccccc
Q 039556 306 MQRDWSSAAIRSAMMTTAYLL 326 (515)
Q Consensus 306 ~~p~~s~~~i~~~L~~tA~~~ 326 (515)
.+|.|+|.+||.+|++||+++
T Consensus 392 ~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 392 EGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cCCCCCHHHHHHHHHHhCccC
Confidence 478999999999999999853
No 14
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.66 E-value=6.2e-16 Score=154.02 Aligned_cols=86 Identities=36% Similarity=0.551 Sum_probs=72.6
Q ss_pred eeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCC
Q 039556 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311 (515)
Q Consensus 232 ~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s 311 (515)
.++.||++||... ..+||||.|||.+|++..+..... . .... +.|..++|||||||+|||++||+++++|.++
T Consensus 179 ~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~~~-~---~~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~~~ 251 (264)
T cd07487 179 GISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGNP-G---AGVG-SGYFEMSGTSMATPHVSGAIALLLQANPILT 251 (264)
T ss_pred cccccccCCCCCC--CCcCCCEEccccceEecccccccc-C---CCCC-CceEeccccchHHHHHHHHHHHHHHHCcCCC
Confidence 3899999999875 789999999999999986542110 0 0011 6789999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 039556 312 SAAIRSAMMTTAY 324 (515)
Q Consensus 312 ~~~i~~~L~~tA~ 324 (515)
+.+||++|++||+
T Consensus 252 ~~~ik~~L~~tA~ 264 (264)
T cd07487 252 PDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999984
No 15
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.65 E-value=7.6e-16 Score=154.75 Aligned_cols=84 Identities=38% Similarity=0.405 Sum_probs=74.8
Q ss_pred cccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHh
Q 039556 226 GTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKA 305 (515)
Q Consensus 226 ~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~ 305 (515)
+.+..+.++.||++|+.. -||||+|||.+|+++++. +.|..++|||||||||||++|||+|
T Consensus 167 a~~~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~--------------~~~~~~sGTS~AaP~vaG~aALl~s 227 (267)
T cd07476 167 AMDDDGLPLKFSNWGADY-----RKKGILAPGENILGAALG--------------GEVVRRSGTSFAAAIVAGIAALLLS 227 (267)
T ss_pred eecCCCCeeeecCCCCCC-----CCceEEecCCCceeecCC--------------CCeEEeccHHHHHHHHHHHHHHHHH
Confidence 345567789999999865 378999999999999887 6899999999999999999999999
Q ss_pred hCCC----CCHHHHHHHHHhccccccC
Q 039556 306 MQRD----WSSAAIRSAMMTTAYLLDN 328 (515)
Q Consensus 306 ~~p~----~s~~~i~~~L~~tA~~~~~ 328 (515)
.+|. ++|++||++|++||+++..
T Consensus 228 ~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 228 LQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred hhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 9886 9999999999999998753
No 16
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.64 E-value=8.2e-16 Score=156.36 Aligned_cols=72 Identities=29% Similarity=0.493 Sum_probs=66.7
Q ss_pred eeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCC
Q 039556 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS 311 (515)
Q Consensus 232 ~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s 311 (515)
.++.||++|+. +|||+|||++|+++.+. +.|..++|||||||||||++||++|++|.++
T Consensus 220 ~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt 278 (291)
T cd07483 220 LVANFSNYGKK-------NVDVFAPGERIYSTTPD--------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLT 278 (291)
T ss_pred cccccCCCCCC-------ceEEEeCCCCeEeccCc--------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCC
Confidence 58999999984 34999999999999876 6899999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 039556 312 SAAIRSAMMTTAY 324 (515)
Q Consensus 312 ~~~i~~~L~~tA~ 324 (515)
+.|||++|++||.
T Consensus 279 ~~~v~~~L~~ta~ 291 (291)
T cd07483 279 AKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999984
No 17
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.63 E-value=1.9e-15 Score=152.60 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=64.7
Q ss_pred eeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHh----h-
Q 039556 232 QVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKA----M- 306 (515)
Q Consensus 232 ~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~----~- 306 (515)
.++.|||+||.. ||.|||++|+++++........... ..|..++|||||||||||++|||++ +
T Consensus 192 ~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~~~~~~----~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~ 259 (277)
T cd04843 192 TRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDLGGENQ----DYTDSFSGTSSASPIVAGAAASIQGIAKQKG 259 (277)
T ss_pred ccccccCCCCcc--------ceEcCCCCeEecCCCCcccccCCCC----cceeeecccchhhHHHHHHHHHHHHHHhhcC
Confidence 389999999977 9999999999998863321000000 2346899999999999999999975 3
Q ss_pred CCCCCHHHHHHHHHhccc
Q 039556 307 QRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 307 ~p~~s~~~i~~~L~~tA~ 324 (515)
+|+|+|+|||++|+.|++
T Consensus 260 ~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 260 GTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 499999999999999874
No 18
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.63 E-value=2.8e-16 Score=159.54 Aligned_cols=87 Identities=28% Similarity=0.262 Sum_probs=68.6
Q ss_pred ecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCC-----CCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCC
Q 039556 235 YFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPV-----KPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRD 309 (515)
Q Consensus 235 ~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~-----~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~ 309 (515)
.||+|||... ..+||||+|||++|.+..+..... ......... ..|..++|||||||||||++|||++++|+
T Consensus 200 ~fs~~Gp~~~--~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GTS~AaP~Vag~aAll~~~~p~ 276 (291)
T cd04847 200 ATTSSGPGSP--GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSG-GGFVTVGGTSFAAPLAARLAAGLFAELPE 276 (291)
T ss_pred CccccCCCCC--CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCC-CcccccccchHHHHHHHHHHHHHHHHCCC
Confidence 4999999875 899999999999998854321100 000000011 67999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccc
Q 039556 310 WSSAAIRSAMMTTAY 324 (515)
Q Consensus 310 ~s~~~i~~~L~~tA~ 324 (515)
++|++||++|+.+|+
T Consensus 277 ~t~~~ikalL~~sA~ 291 (291)
T cd04847 277 LSPETIRALLIHSAE 291 (291)
T ss_pred CCHHHHHHHHHhhcC
Confidence 999999999999984
No 19
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.63 E-value=1.3e-16 Score=160.22 Aligned_cols=112 Identities=36% Similarity=0.461 Sum_probs=90.3
Q ss_pred ccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhh
Q 039556 227 TKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAM 306 (515)
Q Consensus 227 ~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~ 306 (515)
......++.||++|+... ...+||||+|||.+|+++++.... ..|...+|||||||+|||++||++++
T Consensus 171 ~~~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-----------~~~~~~~GTS~Aap~vag~~All~~~ 238 (282)
T PF00082_consen 171 VDNNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-----------GSYTSFSGTSFAAPVVAGAAALLLSK 238 (282)
T ss_dssp EETTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES-----------EEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccc-----------ccccccCcCCchHHHHHHHHHHHHHH
Confidence 344557799999976542 478999999999999999876210 24788999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCC
Q 039556 307 QRDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMD 359 (515)
Q Consensus 307 ~p~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 359 (515)
+|.|++.+||.+|++||......+ .......+|+|+||+.+|++
T Consensus 239 ~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 239 YPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp STTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999999876211 12233467999999999974
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.61 E-value=2.7e-15 Score=149.29 Aligned_cols=82 Identities=40% Similarity=0.592 Sum_probs=72.9
Q ss_pred eecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHH
Q 039556 224 KLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL 303 (515)
Q Consensus 224 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl 303 (515)
+.+.+..+..+.||++||.. ||+|||.+|+++.+... ..|..++|||||||+|||++|||
T Consensus 174 Vga~~~~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~------------~~~~~~~GTS~Aap~vaG~~All 233 (255)
T cd04077 174 VGATDSDDARASFSNYGSCV--------DIFAPGVDILSAWIGSD------------TATATLSGTSMAAPHVAGLAAYL 233 (255)
T ss_pred EeccCCCCCccCcccCCCCC--------cEEeCCCCeEecccCCC------------CcEEeeCcHHHHHHHHHHHHHHH
Confidence 34455667799999999987 99999999999887522 68999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHhcccc
Q 039556 304 KAMQRDWSSAAIRSAMMTTAYL 325 (515)
Q Consensus 304 ~~~~p~~s~~~i~~~L~~tA~~ 325 (515)
++++|.+++++||++|++||++
T Consensus 234 ~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 234 LSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999974
No 21
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.8e-15 Score=160.24 Aligned_cols=100 Identities=31% Similarity=0.366 Sum_probs=83.1
Q ss_pred eeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhh----CC
Q 039556 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAM----QR 308 (515)
Q Consensus 233 va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~----~p 308 (515)
+=.||||||+.+ +.+--.|.|||+.|.+. |... + ..-..|.|||||+|+++|..|||++. +-
T Consensus 454 ~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~t---------l--q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni 519 (1304)
T KOG1114|consen 454 PYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQYT---------L--QNSQLMNGTSMSSPSACGAIALLLSGLKAQNI 519 (1304)
T ss_pred ccccccCCCCcC--CCcceEEecCCccccCC-chhh---------h--hhhhhhCCcccCCccccchHHHHHHHHHhcCC
Confidence 456899999986 77777999999998763 3321 0 35678999999999999999999765 56
Q ss_pred CCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCC
Q 039556 309 DWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMD 359 (515)
Q Consensus 309 ~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 359 (515)
.|||..||.+|++||+++.+ -.+|.||.|+|++.+|.+
T Consensus 520 ~ytpysVrrAlenTa~~l~~-------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 520 PYTPYSVRRALENTATKLGD-------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCcHHHHHHHHHhcccccCc-------------cchhccCcceeehhHHHH
Confidence 89999999999999998753 147899999999999976
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=1.2e-14 Score=144.36 Aligned_cols=88 Identities=43% Similarity=0.647 Sum_probs=71.1
Q ss_pred cccCCCeeeecCCCC----------CCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhH
Q 039556 226 GTKRAPQVAYFSSRG----------PDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPH 295 (515)
Q Consensus 226 ~~~~~~~va~fSs~G----------p~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPh 295 (515)
..+..+..+.||++| |.. .....||||.|||.+|++++..... . +.|..++||||||||
T Consensus 157 a~~~~~~~~~~s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~~------~----~~~~~~~GTS~AaP~ 225 (254)
T cd07490 157 AVDRDDEDAWFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGANG------D----GQYTRLSGTSMAAPH 225 (254)
T ss_pred cccccCCccCccCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCCCC------C----CCeeecccHHHHHHH
Confidence 345566777888777 222 2356899999999999997632110 1 689999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 039556 296 VAGIAALLKAMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 296 VAG~aALl~~~~p~~s~~~i~~~L~~tA~ 324 (515)
|||++||+++++|+|++.+||.+|++||+
T Consensus 226 vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 226 VAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999984
No 23
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=1e-14 Score=143.76 Aligned_cols=85 Identities=27% Similarity=0.361 Sum_probs=69.1
Q ss_pred ecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLK 304 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~ 304 (515)
.+.+..+.++.||++||.. |+.|||.++.......... .+... +.|..++|||||||+|||++|||+
T Consensus 158 ga~~~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~-~~~~~~~GTS~Aap~vaG~~All~ 224 (242)
T cd07498 158 AATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPG-GGYGSFSGTSFASPVAAGVAALIL 224 (242)
T ss_pred EEeCCCCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCC-CceEeeCcHHHHHHHHHHHHHHHH
Confidence 3445667899999999987 9999999998875432100 00111 678999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhc
Q 039556 305 AMQRDWSSAAIRSAMMTT 322 (515)
Q Consensus 305 ~~~p~~s~~~i~~~L~~t 322 (515)
+++|+|++++||++|+.|
T Consensus 225 ~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 225 SANPNLTPAEVEDILTST 242 (242)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999875
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=1.3e-14 Score=146.96 Aligned_cols=145 Identities=27% Similarity=0.291 Sum_probs=96.5
Q ss_pred ceEEEEeecCCCcch-hhhhHHHHHHhcCceeEEEcCCCccccCCCCccCeeecCchhhHHHHHHHhcCCCceEEEEece
Q 039556 144 RKYIFCAYDYDGNVT-VYQQFKEVQRIGAAGAVFSSDPRQYLSSSNFSMPLVTVNPKDWELVKKYIINTENASVSIKFQI 222 (515)
Q Consensus 144 GkIvlc~~~~g~~~~-~~k~~~~v~~aGa~gvi~~n~~g~~~~~~~~~~P~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~ 222 (515)
.+|+.| +.|.... .....+.+..+-.+|+|++...|+.........|+.. + ..|
T Consensus 138 ~~Iin~--S~G~~~~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~----------------~---~vi---- 192 (285)
T cd07496 138 AKVINL--SLGGDGACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANC----------------R---GVI---- 192 (285)
T ss_pred CeEEEe--CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCC----------------C---ceE----
Confidence 477777 7775433 2222344455555688877664443222112233211 1 122
Q ss_pred eeecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCC--CCCCCCccccceEEecCcccchhHHHHHH
Q 039556 223 TKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVK--PIRKSDYLFSDYALMSGTSISCPHVAGIA 300 (515)
Q Consensus 223 t~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~--~~~~~~~~~~~~~~~SGTSmAaPhVAG~a 300 (515)
++.+....+.++.||++|+.. ||+|||.+|.++........ ........ ..|..++|||||||+|||++
T Consensus 193 ~Vga~~~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~sGTS~AaP~vaG~a 263 (285)
T cd07496 193 AVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGG-STYGFLQGTSMAAPHVAGVA 263 (285)
T ss_pred EEeccCCCCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCC-CceEeeCcHHHHHHHHHHHH
Confidence 334456678899999999987 99999999998876532110 00000011 57899999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhc
Q 039556 301 ALLKAMQRDWSSAAIRSAMMTT 322 (515)
Q Consensus 301 ALl~~~~p~~s~~~i~~~L~~t 322 (515)
||+++++|.|++++||++|++|
T Consensus 264 Alv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 264 ALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999875
No 25
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=2.5e-14 Score=146.03 Aligned_cols=77 Identities=26% Similarity=0.335 Sum_probs=61.0
Q ss_pred CCCCCCCceE----------------eCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCC
Q 039556 245 PPWILKPDIL----------------APGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQR 308 (515)
Q Consensus 245 ~~~~lKPdi~----------------APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p 308 (515)
.++..|||++ |||..|.++..... .....+ ..|..+||||||||||||++|||++++|
T Consensus 194 ~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~--~~~~~~----~~y~~~sGTS~Aap~vaG~aAll~~~~p 267 (298)
T cd07494 194 YPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP--DGTPPN----DGWGVFSGTSAAAPQVAGVCALMLQANP 267 (298)
T ss_pred CCCCccCccccccCcCCcccccccccCCCcceeccccCCC--CCCCCC----CCeEeeccchHHHHHHHHHHHHHHHhCC
Confidence 3467788874 79999976654210 000001 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcccccc
Q 039556 309 DWSSAAIRSAMMTTAYLLD 327 (515)
Q Consensus 309 ~~s~~~i~~~L~~tA~~~~ 327 (515)
.|++++||.+|+.||.++.
T Consensus 268 ~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 268 GLSPERARSLLNKTARDVT 286 (298)
T ss_pred CCCHHHHHHHHHHhCcccC
Confidence 9999999999999998764
No 26
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.55 E-value=1.6e-14 Score=145.45 Aligned_cols=82 Identities=33% Similarity=0.434 Sum_probs=70.1
Q ss_pred ecccCCCeeeecCCCCCCCCCCCCCCCceEeCCC-cEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGV-DILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALL 303 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~-~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl 303 (515)
......+.++.||++|+.. ||.|||. +|+++++...... . ..|..++|||||||||||++|||
T Consensus 190 ~a~~~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~~~-------~-~~~~~~sGTS~AaP~VaG~aAll 253 (273)
T cd07485 190 AALDTNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDG-------G-GNYEYLSGTSMAAPHVSGVAALV 253 (273)
T ss_pred EeccCCCCcCccccCCCce--------EEEeCCCCccccccccccCCC-------C-CCeEeeccHHHHHHHHHHHHHHH
Confidence 3445667889999999976 9999999 9999887642110 1 57999999999999999999999
Q ss_pred HhhCCC-CCHHHHHHHHHhc
Q 039556 304 KAMQRD-WSSAAIRSAMMTT 322 (515)
Q Consensus 304 ~~~~p~-~s~~~i~~~L~~t 322 (515)
+|++|. ++|+|||.+|++|
T Consensus 254 ~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 254 LSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHhCCCCCCHHHHHHHHHhC
Confidence 999999 9999999999976
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.55 E-value=3.3e-14 Score=144.00 Aligned_cols=87 Identities=39% Similarity=0.496 Sum_probs=70.7
Q ss_pred CeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhC---
Q 039556 231 PQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQ--- 307 (515)
Q Consensus 231 ~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~--- 307 (515)
..++.||++||... ..+||||+|||++|+++++.... ...... ..|...+|||||||||||++|||+|++
T Consensus 199 ~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~~~~----~~~~~~-~~~~~~~GTS~AaP~VaG~aAll~~~~~~~ 271 (293)
T cd04842 199 DTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSGGGG----IGDTSD-SAYTSKSGTSMATPLVAGAAALLRQYFVDG 271 (293)
T ss_pred CccccccCcCCCCC--CCcCCCEECCCCCeEeccCCCCC----CCCCCh-hheeecCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 34999999999875 78999999999999998754200 000011 578999999999999999999999985
Q ss_pred --C---CCCHHHHHHHHHhccc
Q 039556 308 --R---DWSSAAIRSAMMTTAY 324 (515)
Q Consensus 308 --p---~~s~~~i~~~L~~tA~ 324 (515)
| .+++.++|++|++||+
T Consensus 272 ~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 272 YYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CcCCCcCcCHHHHHHHHHhcCC
Confidence 4 6777899999999984
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.54 E-value=3.2e-14 Score=141.60 Aligned_cols=137 Identities=30% Similarity=0.397 Sum_probs=96.0
Q ss_pred ceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCCCccccC--CCCccCeeecCchhhHHHHHHHhcCCCceEEEEec
Q 039556 144 RKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQYLSS--SNFSMPLVTVNPKDWELVKKYIINTENASVSIKFQ 221 (515)
Q Consensus 144 GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~g~~~~~--~~~~~P~~~i~~~~g~~l~~~~~s~~~~~~~i~~~ 221 (515)
-+|+.+ +.|.........+.+.++...|+|++...|+.... ....+|.. ... .-.|
T Consensus 121 ~~vin~--S~G~~~~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~----------------~~~-~~vi--- 178 (259)
T cd07473 121 AKIINN--SWGGGGPSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPAS----------------YDL-DNII--- 178 (259)
T ss_pred CeEEEe--CCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcc----------------cCC-CCeE---
Confidence 355555 77765444443445555556688877764443221 11122320 000 0122
Q ss_pred eeeecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHH
Q 039556 222 ITKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAA 301 (515)
Q Consensus 222 ~t~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aA 301 (515)
++......+.++.||++||.. ||+.|||.++++..+. ..|..++|||||||+|||++|
T Consensus 179 -~Vga~~~~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~--------------~~~~~~~GTS~AaP~vaG~~A 236 (259)
T cd07473 179 -SVAATDSNDALASFSNYGKKT-------VDLAAPGVDILSTSPG--------------GGYGYMSGTSMATPHVAGAAA 236 (259)
T ss_pred -EEEecCCCCCcCcccCCCCCC-------cEEEeccCCeEeccCC--------------CcEEEeccHhHHHHHHHHHHH
Confidence 233445667888999999863 4999999999997665 689999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhccc
Q 039556 302 LLKAMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 302 Ll~~~~p~~s~~~i~~~L~~tA~ 324 (515)
|++|++|.+++++||++|++||+
T Consensus 237 ll~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 237 LLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999984
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.54 E-value=2.9e-14 Score=139.07 Aligned_cols=132 Identities=30% Similarity=0.412 Sum_probs=93.4
Q ss_pred ceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCCCccccCCCC-ccCeeecCchhhHHHHHHHhcCCCceEEEEece
Q 039556 144 RKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQYLSSSNF-SMPLVTVNPKDWELVKKYIINTENASVSIKFQI 222 (515)
Q Consensus 144 GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~g~~~~~~~~-~~P~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~ 222 (515)
-+|+.+ +.|.........+.++.+-..|+|++...|+....... .+|+. .++ .|
T Consensus 97 ~~Vin~--S~g~~~~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~----------------~~~---vi---- 151 (229)
T cd07477 97 MDIINM--SLGGPSDSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAK----------------YPS---VI---- 151 (229)
T ss_pred CCEEEE--CCccCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCC----------------CCC---EE----
Confidence 477777 77654433332333444555677777664443221111 12211 111 22
Q ss_pred eeecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHH
Q 039556 223 TKLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAAL 302 (515)
Q Consensus 223 t~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aAL 302 (515)
++.+....+.+..||++|+.. |+.|||.+|+++++. +.|..++|||||||+|||++||
T Consensus 152 ~Vga~~~~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~--------------~~~~~~~GTS~Aap~vag~~Al 209 (229)
T cd07477 152 AVGAVDSNNNRASFSSTGPEV--------ELAAPGVDILSTYPN--------------NDYAYLSGTSMATPHVAGVAAL 209 (229)
T ss_pred EEEeecCCCCcCCccCCCCCc--------eEEeCCCCeEEecCC--------------CCEEEEccHHHHHHHHHHHHHH
Confidence 233445667889999999976 999999999999876 6789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhc
Q 039556 303 LKAMQRDWSSAAIRSAMMTT 322 (515)
Q Consensus 303 l~~~~p~~s~~~i~~~L~~t 322 (515)
|+|++|.++|.+||++|++|
T Consensus 210 l~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 210 VWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999975
No 30
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.53 E-value=4.9e-14 Score=140.52 Aligned_cols=79 Identities=42% Similarity=0.527 Sum_probs=71.3
Q ss_pred ecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLK 304 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~ 304 (515)
.+....+..+.||++|+.. |+.|||.+|+++.+. +.|..++|||||||+|||++||++
T Consensus 181 ga~~~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~--------------~~~~~~~GTS~Aap~vag~~Al~~ 238 (260)
T cd07484 181 AATDQDDKRASFSNYGKWV--------DVSAPGGGILSTTPD--------------GDYAYMSGTSMATPHVAGVAALLY 238 (260)
T ss_pred EeeCCCCCcCCcCCCCCCc--------eEEeCCCCcEeecCC--------------CCEEEeeeHHHHHHHHHHHHHHHH
Confidence 3345667889999999876 999999999998776 679999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhccccc
Q 039556 305 AMQRDWSSAAIRSAMMTTAYLL 326 (515)
Q Consensus 305 ~~~p~~s~~~i~~~L~~tA~~~ 326 (515)
+++| |++.+||.+|++||+++
T Consensus 239 ~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 239 SQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred hcCC-CCHHHHHHHHHHhCccC
Confidence 9999 99999999999999864
No 31
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.53 E-value=3.5e-14 Score=145.39 Aligned_cols=72 Identities=63% Similarity=0.976 Sum_probs=60.7
Q ss_pred CCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 039556 249 LKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 249 lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s~~~i~~~L~~tA~ 324 (515)
+||||.|||++|+++++...... ..... ..|..++|||||||||||++|||+|++|.|+|+|||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~~~~---~~~~~-~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGADP---GDARG-EDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccccc---cCCCC-CcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 79999999999999987521111 11111 68999999999999999999999999999999999999999985
No 32
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.49 E-value=1.5e-13 Score=140.12 Aligned_cols=102 Identities=29% Similarity=0.283 Sum_probs=74.7
Q ss_pred CCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCC
Q 039556 229 RAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQR 308 (515)
Q Consensus 229 ~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p 308 (515)
..+....|+++.+.. ..||||.|||++|+++++. +.|..++|||||||||||++||++|++|
T Consensus 195 ~~~~~~~~~~~~~~~----~~~~dv~ApG~~i~s~~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~p 256 (297)
T cd07480 195 ALGRTGNFSAVANFS----NGEVDIAAPGVDIVSAAPG--------------GGYRSMSGTSMATPHVAGVAALWAEALP 256 (297)
T ss_pred CCCCCCCccccCCCC----CCceEEEeCCCCeEeecCC--------------CcEEEeCcHHHHHHHHHHHHHHHHHhCc
Confidence 334444555544432 3578999999999999876 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCcc
Q 039556 309 DWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPN 355 (515)
Q Consensus 309 ~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~ 355 (515)
.+++.+++.+|+......... .......+.++|+|++++.
T Consensus 257 ~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 257 KAGGRALAALLQARLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred ccCHHHHHHHHHHHHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 999988888877432211000 0022345668999999875
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.47 E-value=1.1e-13 Score=140.59 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=68.6
Q ss_pred ecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCc-------EEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVD-------ILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVA 297 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~-------I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVA 297 (515)
......+.++.||++|+.. ++.|||.. |+++.+... . ..|..++||||||||||
T Consensus 210 ga~~~~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~~-------~----~~~~~~sGTS~AaP~VA 270 (297)
T cd04059 210 SAVTANGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGGN-------C----NCTSSHNGTSAAAPLAA 270 (297)
T ss_pred EeeCCCCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCCC-------C----CcccccCCcchhhhhhH
Confidence 3445677889999999987 89999987 666655410 0 45788999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhccc
Q 039556 298 GIAALLKAMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 298 G~aALl~~~~p~~s~~~i~~~L~~tA~ 324 (515)
|++|||+|+||+|++.|||.+|++||+
T Consensus 271 G~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 271 GVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999984
No 34
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.46 E-value=3.3e-13 Score=134.08 Aligned_cols=74 Identities=28% Similarity=0.286 Sum_probs=57.2
Q ss_pred eeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCC-
Q 039556 233 VAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWS- 311 (515)
Q Consensus 233 va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s- 311 (515)
.+.||++|.........||||+|||++|++ +. +.|..+||||||||||||++|||++++|.+.
T Consensus 167 ~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~--------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~ 230 (247)
T cd07488 167 ASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD--------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYK 230 (247)
T ss_pred ecccccccCCCCCCCCceeEEEEeeeeEEC--CC--------------CceeeecccchHHHHHHHHHHHHHHHChhhhh
Confidence 456677543332346789999999999998 33 6788999999999999999999999987655
Q ss_pred -----HHHHHHHHHhc
Q 039556 312 -----SAAIRSAMMTT 322 (515)
Q Consensus 312 -----~~~i~~~L~~t 322 (515)
--++|.+|+.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 231 KGNNNLIALRALVSSS 246 (247)
T ss_pred CcchhHHHHHHHHhcc
Confidence 45566666654
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.46 E-value=3.3e-13 Score=131.52 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=57.3
Q ss_pred CCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 039556 250 KPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 250 KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p~~s~~~i~~~L~~tA~ 324 (515)
++++.|||.+|+++++. +.|..++|||||||||||++|||++++|.|+++|||++|+.||+
T Consensus 162 ~~~~~apg~~i~~~~~~--------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 162 YVEFSADGVDIIAPAPH--------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CceEEeCCCCeEeecCC--------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 44999999999999876 67999999999999999999999999999999999999999985
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.42 E-value=5.9e-13 Score=134.77 Aligned_cols=91 Identities=25% Similarity=0.259 Sum_probs=67.5
Q ss_pred eecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCC---CCCC------CCCCCccccceEEecCcccchh
Q 039556 224 KLGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNR---PVKP------IRKSDYLFSDYALMSGTSISCP 294 (515)
Q Consensus 224 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~---~~~~------~~~~~~~~~~~~~~SGTSmAaP 294 (515)
+......+.++.||++|+... |++|||.++....+... .... ....... +.|..++|||||||
T Consensus 194 Vga~~~~~~~~~~S~~g~~~~-------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GTS~AaP 265 (294)
T cd07482 194 VSATDNNGNLSSFSNYGNSRI-------DLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPE-GGYAYMYGTSLAAP 265 (294)
T ss_pred EEeeCCCCCcCccccCCCCcc-------eEECCCCCcccccccCccccccccccccceeeecccC-CceEeecchhhhhH
Confidence 344567788999999997653 99999999853221100 0000 0000112 68999999999999
Q ss_pred HHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 039556 295 HVAGIAALLKAMQRDWSS-AAIRSAMMTT 322 (515)
Q Consensus 295 hVAG~aALl~~~~p~~s~-~~i~~~L~~t 322 (515)
||||++|||+|++|.|++ .|||++|++|
T Consensus 266 ~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 266 KVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999999999 9999999986
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.42 E-value=7.4e-13 Score=131.45 Aligned_cols=84 Identities=29% Similarity=0.357 Sum_probs=70.1
Q ss_pred eecccCCCeeeec--CCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHH
Q 039556 224 KLGTKRAPQVAYF--SSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAA 301 (515)
Q Consensus 224 ~~~~~~~~~va~f--Ss~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aA 301 (515)
+.+.+..+....| |++|+... .+++.|||.+|+++.+... ..|..++|||||||+|||++|
T Consensus 182 Vga~~~~~~~~~~~~s~~~~~~~-----~~~~~apG~~i~~~~~~~~------------~~~~~~~GTS~Aap~vaG~~A 244 (267)
T cd04848 182 VVAVDPNGTIASYSYSNRCGVAA-----NWCLAAPGENIYSTDPDGG------------NGYGRVSGTSFAAPHVSGAAA 244 (267)
T ss_pred EEEecCCCCcccccccccchhhh-----hheeecCcCceeecccCCC------------CcccccceeEchHHHHHHHHH
Confidence 3444555667777 99987653 3479999999999887411 578899999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhccc
Q 039556 302 LLKAMQRDWSSAAIRSAMMTTAY 324 (515)
Q Consensus 302 Ll~~~~p~~s~~~i~~~L~~tA~ 324 (515)
|++|++|.+++++||++|++||+
T Consensus 245 l~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 245 LLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999984
No 38
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.31 E-value=6.1e-12 Score=125.07 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=53.2
Q ss_pred ecccCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHH
Q 039556 225 LGTKRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLK 304 (515)
Q Consensus 225 ~~~~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~ 304 (515)
...+..+.++.||++|+.+ |++|||++|+++++.... +.|..++|||||||||||++||++
T Consensus 167 gA~~~~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~~-----------~~~~~~sGTS~Atp~vaGvaAL~l 227 (247)
T cd07491 167 GAADEDGGADAPVGDEDRV--------DYILPGENVEARDRPPLS-----------NSFVTHTGSSVATALAAGLAALIL 227 (247)
T ss_pred EeeCCCCCCccccCCCCcc--------eEEeCCCceecCCcCCCC-----------CCeeeeccHHHHHHHHHHHHHHHH
Confidence 3445667889999999987 999999999999763110 689999999999999999999999
Q ss_pred hh
Q 039556 305 AM 306 (515)
Q Consensus 305 ~~ 306 (515)
+.
T Consensus 228 ~~ 229 (247)
T cd07491 228 YC 229 (247)
T ss_pred HH
Confidence 85
No 39
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.5e-12 Score=132.02 Aligned_cols=163 Identities=24% Similarity=0.258 Sum_probs=114.2
Q ss_pred ceEEEEeecCCCc-----chhhhhHHHHHHhcCceeEEEcCCCccccCCCCccCeeecCchhhHHHHHHHhcCCCceEEE
Q 039556 144 RKYIFCAYDYDGN-----VTVYQQFKEVQRIGAAGAVFSSDPRQYLSSSNFSMPLVTVNPKDWELVKKYIINTENASVSI 218 (515)
Q Consensus 144 GkIvlc~~~~g~~-----~~~~k~~~~v~~aGa~gvi~~n~~g~~~~~~~~~~P~~~i~~~~g~~l~~~~~s~~~~~~~i 218 (515)
-||=+.+++-|+. .|++| +-+.-|.-+|++...|++... ...++.+.+-.-.|
T Consensus 290 ~kidvLNLSIGGPDfmD~PFVeK----VwEltAnNvIMvSAiGNDGPL------------------YGTLNNPaDQsDVi 347 (1033)
T KOG4266|consen 290 TKIDVLNLSIGGPDFMDLPFVEK----VWELTANNVIMVSAIGNDGPL------------------YGTLNNPADQSDVI 347 (1033)
T ss_pred hhcceEeeccCCcccccchHHHH----HHhhccCcEEEEEecCCCCcc------------------eeecCCccccccee
Confidence 5666666566654 45555 556677778887764332110 00111121111122
Q ss_pred EeceeeecccCCCeeeecCCCCCCCC----CCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchh
Q 039556 219 KFQITKLGTKRAPQVAYFSSRGPDSQ----PPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCP 294 (515)
Q Consensus 219 ~~~~t~~~~~~~~~va~fSs~Gp~~~----~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaP 294 (515)
-+.+.+-.|.+|.|||||-+.. ..+++||||.+-|.+|...-.. ++-..+||||.|+|
T Consensus 348 ----GVGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~--------------~GCr~LSGTSVaSP 409 (1033)
T KOG4266|consen 348 ----GVGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS--------------TGCRSLSGTSVASP 409 (1033)
T ss_pred ----eeccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc--------------ccchhccCCcccch
Confidence 2344567899999999998654 3578999999999998875444 45678999999999
Q ss_pred HHHHHHHHHHhh----CCCCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCC
Q 039556 295 HVAGIAALLKAM----QRDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMD 359 (515)
Q Consensus 295 hVAG~aALl~~~----~p~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 359 (515)
.|||+++||.+. .--+.|+-+|.+|...|..+.. ...|.||+|.+|..++.+
T Consensus 410 VVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 410 VVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred hhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------CchhhccCcchhHHHHHH
Confidence 999999999872 3346899999999999987742 235789999999998764
No 40
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.24 E-value=2.2e-11 Score=111.11 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=76.9
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCccccC--CCCccCeeecCchhhHHHHHHHhcCCCceEEE
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQYLSS--SNFSMPLVTVNPKDWELVKKYIINTENASVSI 218 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~~~~--~~~~~P~~~i~~~~g~~l~~~~~s~~~~~~~i 218 (515)
..|||||| +||.|.+.+| ..+++++||+|+|++|+ .+..... ....+|+++|+.++|..|++|+++ .++|
T Consensus 46 v~GkIvL~--~rg~c~~~~K-~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i 118 (143)
T cd02133 46 VKGKIALI--QRGEITFVEK-IANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES----SKKL 118 (143)
T ss_pred ccceEEEE--ECCCCCHHHH-HHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC----CCeE
Confidence 34999999 9999999999 99999999999999988 3321111 124689999999999999999987 4677
Q ss_pred EeceeeecccCCCeeeecCCCCCCC
Q 039556 219 KFQITKLGTKRAPQVAYFSSRGPDS 243 (515)
Q Consensus 219 ~~~~t~~~~~~~~~va~fSs~Gp~~ 243 (515)
.+..+.. ..+++.++.||||||..
T Consensus 119 ~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 119 TFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EEEeccc-cccCCccccccCcCCCC
Confidence 7777655 56788999999999963
No 41
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.15 E-value=2.1e-10 Score=110.94 Aligned_cols=76 Identities=39% Similarity=0.540 Sum_probs=60.7
Q ss_pred ccCCCeee-ecCCCCCCCCCCCCCCCceEeCCCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHh
Q 039556 227 TKRAPQVA-YFSSRGPDSQPPWILKPDILAPGVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKA 305 (515)
Q Consensus 227 ~~~~~~va-~fSs~Gp~~~~~~~lKPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~ 305 (515)
........ .++++|+ |||+.|||.++........ ..+..++|||||||+|||++||+++
T Consensus 165 ~~~~~~~~~~~~~~~~--------~~~~~apg~~~~~~~~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~ 224 (241)
T cd00306 165 VDRDGTPASPSSNGGA--------GVDIAAPGGDILSSPTTGG------------GGYATLSGTSMAAPIVAGVAALLLS 224 (241)
T ss_pred cCcCCCccCCcCCCCC--------CceEEeCcCCccCcccCCC------------CCeEeeccHHHHHHHHHHHHHHHHH
Confidence 33444444 5666665 4599999999987511111 6789999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhc
Q 039556 306 MQRDWSSAAIRSAMMTT 322 (515)
Q Consensus 306 ~~p~~s~~~i~~~L~~t 322 (515)
++|.+++.++|++|+++
T Consensus 225 ~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 225 ANPDLTPAQVKAALLST 241 (241)
T ss_pred HCCCCCHHHHHHHHhhC
Confidence 99999999999999875
No 42
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.02 E-value=1.5e-09 Score=96.34 Aligned_cols=95 Identities=31% Similarity=0.535 Sum_probs=73.8
Q ss_pred EEecCCeEEEeeeeecC-C--CCCC-----------------------CccceEEEEeecCCCc-chhhhhHHHHHHhcC
Q 039556 119 ITLGNRELTVTGQSVYP-E--NLFV-----------------------SKERKYIFCAYDYDGN-VTVYQQFKEVQRIGA 171 (515)
Q Consensus 119 ~~lg~g~~~i~G~s~~~-~--~~~~-----------------------~~~GkIvlc~~~~g~~-~~~~k~~~~v~~aGa 171 (515)
++||||.. +.|+++++ + ..+. ...||||+| +|+.| .+.+| ..+++++||
T Consensus 2 i~LGng~~-i~G~sl~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc--~~~~~~~~~~k-~~~~~~~GA 77 (126)
T cd02120 2 VTLGNGKT-IVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC--DRGGNTSRVAK-GDAVKAAGG 77 (126)
T ss_pred EEeCCCCE-EEEEEccCCCCCccceEeccCcCCCCccccCCCCCCChhhccccEEEE--eCCCCccHHHH-HHHHHHcCC
Confidence 67888887 88888887 4 1110 012999999 99999 88889 999999999
Q ss_pred ceeEEEcCC-Ccc-ccCCCCccCeeecCchhhHHHHHHHhcCCCceEE
Q 039556 172 AGAVFSSDP-RQY-LSSSNFSMPLVTVNPKDWELVKKYIINTENASVS 217 (515)
Q Consensus 172 ~gvi~~n~~-g~~-~~~~~~~~P~~~i~~~~g~~l~~~~~s~~~~~~~ 217 (515)
+|+|++++. +.. .......+|++.|+.++|..|++|++++.+++++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999872 221 1122467999999999999999999998776554
No 43
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.89 E-value=2.1e-09 Score=88.00 Aligned_cols=46 Identities=33% Similarity=0.554 Sum_probs=41.3
Q ss_pred CCCceEEEeccccceEEeecCHHHHHhhcCCCCeEEEEeCcccccc
Q 039556 14 DTPTHLYTYNHVVDGFSAVLSQTHLDQLQKLPGHHATYIETFGHLH 59 (515)
Q Consensus 14 ~~~~i~ysY~~~~~GFaA~lt~~~~~~L~~~p~V~~Ve~D~~~~l~ 59 (515)
....++|+|+.+|+||+++|+++++++|+++|+|.+||||+++++|
T Consensus 37 ~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 37 INAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred cCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 4578999999999999999999999999999999999999999886
No 44
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.68 E-value=1.9e-07 Score=81.49 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=59.4
Q ss_pred ceEEEEEEEEeccCCCeeeEEEEEC--------CCC----------c-EEEEecceEEEecCCcEEEEEEEEEecccccc
Q 039556 418 ASFTFKWVLTNVDDTSSVNTAAVKA--------PAG----------M-KVVVQPETATFDRKYSKAEFNLTLSIDLGITV 478 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~~v~~--------p~g----------~-~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 478 (515)
...+++.||+|.|+...+|++++.. ..| . .+...|..+++ ++|++++|+|+|+++.. +
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~--~ 84 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSG--L 84 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GG--G
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhc--C
Confidence 4589999999999999999998871 011 1 67888999999 89999999999999753 1
Q ss_pred cCCCCCcceEEEEEEEeeCCeeEEEeEEE
Q 039556 479 SPKCNYLGNFGYLTWHENIGKHMVRSPIV 507 (515)
Q Consensus 479 ~~~~~~~~~~G~i~~~~~~~~~~vr~P~~ 507 (515)
+.. ...+++|+|.+++.++...+++||+
T Consensus 85 ~~~-~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 85 DAS-NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HHT-T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred Ccc-cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 122 2389999999953344459999996
No 45
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.63 E-value=6.5e-08 Score=82.18 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=52.1
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC------CCccccCCCCccCeeecCchhhHHHHHHH
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD------PRQYLSSSNFSMPLVTVNPKDWELVKKYI 208 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~------~g~~~~~~~~~~P~~~i~~~~g~~l~~~~ 208 (515)
..|||||| +||.|.+.+| +.+|+++||+|+|++|. ...........+|+++|+.++|+.|++|+
T Consensus 32 ~~gkIvlv--~rg~~~~~~k-~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 32 VKGKIVLV--ERGSCSFDDK-VRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp CTTSEEEE--ESTSSCHHHH-HHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccceEEEE--ecCCCCHHHH-HHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 34999999 9999999999 99999999999999992 11122334578999999999999999986
No 46
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.50 E-value=3.9e-07 Score=80.47 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCc--ccc-------CCCCccCeeecCchhhHHHHHHHhcCC
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQ--YLS-------SSNFSMPLVTVNPKDWELVKKYIINTE 212 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~--~~~-------~~~~~~P~~~i~~~~g~~l~~~~~s~~ 212 (515)
.|||+|+ +||.|.|.+| ..+++++||+++|++|+ .+. ... .....+|+++|+.++|+.|++.+..+.
T Consensus 34 ~g~I~Lv--~RG~C~F~~K-~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~ 110 (118)
T cd02127 34 NGNIALI--ERGGCSFLTK-AINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLG 110 (118)
T ss_pred CCeEEEE--ECCCCCHHHH-HHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcCC
Confidence 4999999 9999999999 99999999999999998 221 111 123468999999999999999999888
Q ss_pred CceEEE
Q 039556 213 NASVSI 218 (515)
Q Consensus 213 ~~~~~i 218 (515)
.+.+.|
T Consensus 111 ~~~~~~ 116 (118)
T cd02127 111 LPYAII 116 (118)
T ss_pred ceEEee
Confidence 765544
No 47
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.48 E-value=3.4e-07 Score=80.66 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=57.2
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCcc-cc----CCCCccCeeecCchhhHHHHHHHhcCCCc
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQY-LS----SSNFSMPLVTVNPKDWELVKKYIINTENA 214 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~-~~----~~~~~~P~~~i~~~~g~~l~~~~~s~~~~ 214 (515)
..|||||| +||.|.+.+| ..+++++||+|+|++|+ .... .. .....+|+++|+.++|..|++|++.+...
T Consensus 39 v~GkIvL~--~rg~c~f~~k-~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v 114 (118)
T cd04818 39 FAGKIALI--DRGTCNFTVK-VLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTV 114 (118)
T ss_pred CCCEEEEE--ECCCCCHHHH-HHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcE
Confidence 34999999 9999999999 99999999999999988 3211 11 12346999999999999999999977643
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.43 E-value=5.1e-07 Score=80.08 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=57.0
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCccc-----cC-CCCccCeeecCchhhHHHHHHHhcCCC
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQYL-----SS-SNFSMPLVTVNPKDWELVKKYIINTEN 213 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~~-----~~-~~~~~P~~~i~~~~g~~l~~~~~s~~~ 213 (515)
..|||||| +||.|.+.+| .++++++||+|+|++|+ .+... .. ....+|+++|+.++|+.|+++++.+.+
T Consensus 42 ~~GkIvLv--~rg~c~f~~K-~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 42 VKGAIVLV--DRGGCPFADK-QKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred cCCeEEEE--ECCCCCHHHH-HHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCE
Confidence 34999999 9999999999 99999999999999988 32111 11 234699999999999999999987754
No 49
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-06 Score=92.40 Aligned_cols=80 Identities=40% Similarity=0.618 Sum_probs=67.0
Q ss_pred cCCCeeeecCCCCCCCCCCCCCCCceEeCCCcEEe-----eeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHH
Q 039556 228 KRAPQVAYFSSRGPDSQPPWILKPDILAPGVDILA-----AWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAAL 302 (515)
Q Consensus 228 ~~~~~va~fSs~Gp~~~~~~~lKPdi~APG~~I~s-----a~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aAL 302 (515)
...+.++.||++|+.. ..+++|||.+|.+ .+++.. ..|..++||||++|||+|++||
T Consensus 313 ~~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~------------~~~~~~~Gts~a~p~v~g~aal 374 (508)
T COG1404 313 DLSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG------------ADYVTLSGTSMAAPHVSGVAAL 374 (508)
T ss_pred CCCCccccccccCCCC------CcceeCCCccccccccceeeeCCc------------cceEeeccccccccHHHHHHHH
Confidence 3458999999999851 1299999999998 555411 1499999999999999999999
Q ss_pred HHhhCC-CCCHHHHHHHHHhcccc
Q 039556 303 LKAMQR-DWSSAAIRSAMMTTAYL 325 (515)
Q Consensus 303 l~~~~p-~~s~~~i~~~L~~tA~~ 325 (515)
+++.+| .+++.+++..+..++..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 375 VLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred HHccCcccCCHHHHHHHHhhcccc
Confidence 999999 89999999998888763
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.42 E-value=6.7e-07 Score=81.13 Aligned_cols=70 Identities=6% Similarity=-0.058 Sum_probs=58.1
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-C-Ccccc----CCCCccCeeecCchhhHHHHHHHhcCCCce
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-P-RQYLS----SSNFSMPLVTVNPKDWELVKKYIINTENAS 215 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~-g~~~~----~~~~~~P~~~i~~~~g~~l~~~~~s~~~~~ 215 (515)
.|+|||+ +||.|.|.+| ..+|+++||+++|++|+ + +.... .....+|+++|+.++|+.|+++++.+.+.+
T Consensus 60 ~g~IaLV--~RG~C~F~~K-~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~G~~Vt 135 (138)
T cd02122 60 EPWIALI--QRGNCTFEEK-IKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLERGISVT 135 (138)
T ss_pred CCeEEEE--ECCCCCHHHH-HHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHcCCcEE
Confidence 4999999 9999999999 99999999999999998 3 32111 123468999999999999999998876543
No 51
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.39 E-value=7.2e-07 Score=79.69 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=56.9
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCc-----cc-----c---CCCCccCeeecCchhhHHHHHHH
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQ-----YL-----S---SSNFSMPLVTVNPKDWELVKKYI 208 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~-----~~-----~---~~~~~~P~~~i~~~~g~~l~~~~ 208 (515)
.|||+|+ +||.|.|.+| ..+++++||+++|++|+ .+. .. . .+...+|+++|+..+|+.|++++
T Consensus 40 ~gkIaLv--~RG~C~f~~K-~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l 116 (126)
T cd02126 40 KGKIAIM--ERGDCMFVEK-ARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAI 116 (126)
T ss_pred CceEEEE--ECCCCcHHHH-HHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHH
Confidence 4999999 9999999999 99999999999999987 331 11 0 12346899999999999999999
Q ss_pred hcCCCc
Q 039556 209 INTENA 214 (515)
Q Consensus 209 ~s~~~~ 214 (515)
+.+...
T Consensus 117 ~~~~~~ 122 (126)
T cd02126 117 KEHQNV 122 (126)
T ss_pred HhCCce
Confidence 876543
No 52
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.39 E-value=8e-07 Score=78.42 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=56.4
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCCCc--cc--c----CCCCccCeeecCchhhHHHHHHHhcCCC
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQ--YL--S----SSNFSMPLVTVNPKDWELVKKYIINTEN 213 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~g~--~~--~----~~~~~~P~~~i~~~~g~~l~~~~~s~~~ 213 (515)
.|||||| +||.|.+.+| ..+++++||+|+|++++... .. . .....+|++.|+.++|..|++|+.++.+
T Consensus 46 ~GkIvl~--~~g~~~~~~k-~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~~~~ 121 (126)
T cd00538 46 KGKIVLV--RRGGCSFSEK-VKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKT 121 (126)
T ss_pred cceEEEE--ECCCcCHHHH-HHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhcCCc
Confidence 4999999 9999999999 99999999999999987321 11 1 1235799999999999999999988664
No 53
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.39 E-value=7.1e-07 Score=78.76 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=54.2
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCCCc-cc---c--CCCCccCeeecCchhhHHHHHHHhc
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQ-YL---S--SSNFSMPLVTVNPKDWELVKKYIIN 210 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~g~-~~---~--~~~~~~P~~~i~~~~g~~l~~~~~s 210 (515)
.|||+|+ +||.|+|.+| ..+++++||+++|++|+... .. . .....||+++|+.++|++|++.+..
T Consensus 44 ~gkIaLV--~RG~CsF~~K-~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 44 KGKAVVV--MRGNCTFYEK-ARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred CCeEEEE--ECCCcCHHHH-HHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 4999999 9999999999 99999999999999998321 11 1 1345689999999999999988763
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.38 E-value=9e-07 Score=78.49 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=58.1
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCC--Ccc--c--cCCCCccCeeecCchhhHHHHHHHhcCCCc
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDP--RQY--L--SSSNFSMPLVTVNPKDWELVKKYIINTENA 214 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~--g~~--~--~~~~~~~P~~~i~~~~g~~l~~~~~s~~~~ 214 (515)
..|||||+ +||.|.+.+| .++++++||+|+|++|+. +.. . ......+|++.|+.++|+.|++.++++.+.
T Consensus 43 ~~gkIvlv--~rg~c~f~~K-~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v 118 (122)
T cd02130 43 VAGNIALI--ERGECPFGDK-SALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGGEV 118 (122)
T ss_pred CCCEEEEE--ECCCCCHHHH-HHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCCcE
Confidence 45999999 9999999999 999999999999999874 211 1 112356999999999999999999988754
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.37 E-value=9.2e-07 Score=79.11 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=56.4
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCcccc------------CCCCccCeeecCchhhHHHHHHHh
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQYLS------------SSNFSMPLVTVNPKDWELVKKYII 209 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~~~------------~~~~~~P~~~i~~~~g~~l~~~~~ 209 (515)
.++|||+ +||.|.|.+| ..+|+++||+++|++|+ ++.... .....+|+++|+.++|+.|++.+.
T Consensus 42 ~~~IvLv--~RG~C~F~~K-~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~ 118 (127)
T cd02125 42 RPVILLL--DRGGCFFTLK-AWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAIS 118 (127)
T ss_pred CceEEEE--ECCCcCHHHH-HHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHh
Confidence 3799999 9999999999 99999999999999998 332110 112358999999999999999998
Q ss_pred cCCC
Q 039556 210 NTEN 213 (515)
Q Consensus 210 s~~~ 213 (515)
.+..
T Consensus 119 ~g~~ 122 (127)
T cd02125 119 NGEM 122 (127)
T ss_pred cCCe
Confidence 7765
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.37 E-value=9.4e-07 Score=80.30 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=57.7
Q ss_pred CccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCcccc------C-CCCccCeeecCchhhHHHHHHHhcCC
Q 039556 141 SKERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQYLS------S-SNFSMPLVTVNPKDWELVKKYIINTE 212 (515)
Q Consensus 141 ~~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~~~------~-~~~~~P~~~i~~~~g~~l~~~~~s~~ 212 (515)
...|||+|+ +||.|.|.+| ..+++++||+++|++|+ ++.... . ....+|+++|+..+|+.|++++..+.
T Consensus 57 ~~~g~IvLV--~RG~C~F~~K-~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~ 133 (139)
T cd02132 57 KLSGSIALV--ERGECAFTEK-AKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGK 133 (139)
T ss_pred ccCCeEEEE--ECCCCCHHHH-HHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCC
Confidence 344999999 9999999999 99999999999999987 321111 0 13478999999999999999998876
Q ss_pred C
Q 039556 213 N 213 (515)
Q Consensus 213 ~ 213 (515)
.
T Consensus 134 ~ 134 (139)
T cd02132 134 K 134 (139)
T ss_pred c
Confidence 5
No 57
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.26 E-value=1.6e-06 Score=78.55 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=55.3
Q ss_pred ccceEEEEeecCCCcc-----hhhhhHHHHHHhcCceeEEEcCC---Ccc--ccCC---CCccCeeecCchhhHHHHHHH
Q 039556 142 KERKYIFCAYDYDGNV-----TVYQQFKEVQRIGAAGAVFSSDP---RQY--LSSS---NFSMPLVTVNPKDWELVKKYI 208 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~-----~~~k~~~~v~~aGa~gvi~~n~~---g~~--~~~~---~~~~P~~~i~~~~g~~l~~~~ 208 (515)
..|||+|+ +||.|. |.+| .++++++||+|+|++|+. |.. ...+ ...+|++.|+.++|++|++.+
T Consensus 55 ~~GkIaLI--~RG~c~~~~~~f~~K-v~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l 131 (139)
T cd04817 55 MAGKICLI--ERGGNSKSVYPEIDK-VKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAAL 131 (139)
T ss_pred cCccEEEE--ECCCCCCCcccHHHH-HHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHh
Confidence 34999999 999999 9999 999999999999999983 311 1111 357999999999999999987
Q ss_pred hcC
Q 039556 209 INT 211 (515)
Q Consensus 209 ~s~ 211 (515)
...
T Consensus 132 ~~~ 134 (139)
T cd04817 132 GQS 134 (139)
T ss_pred cCC
Confidence 543
No 58
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.16 E-value=4.4e-06 Score=77.20 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=56.5
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCCCccc---cC-----CCCccCeeecCchhhHHHHHHHhcCCC
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQYL---SS-----SNFSMPLVTVNPKDWELVKKYIINTEN 213 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~g~~~---~~-----~~~~~P~~~i~~~~g~~l~~~~~s~~~ 213 (515)
.|||||+ +||+|.|.+| ..+|+++||+++|++|+.+... .. ....+|+++|+.++|+.|+.++...+.
T Consensus 67 ~g~IvLV--~RG~CtF~~K-v~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 67 GSFIVLI--RRGNCSFETK-VRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred CCeEEEE--ECCCCCHHHH-HHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 4999999 9999999999 9999999999999999832211 11 134799999999999999999887654
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.13 E-value=4.9e-06 Score=73.36 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=52.8
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCccc--c-----CCCCccCeeecCchhhHHHHHHHh
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQYL--S-----SSNFSMPLVTVNPKDWELVKKYII 209 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~~--~-----~~~~~~P~~~i~~~~g~~l~~~~~ 209 (515)
.|||||+ +||.|.|.+| ..+++++||+++|++|+ .+... . .....+|+++++.++|+.|..++.
T Consensus 39 ~gkIvLV--~RG~CsF~~K-~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 39 DGKVALV--LRGGCGFLDK-VMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred CCeEEEE--ECCCCCHHHH-HHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 4999999 9999999999 99999999999999987 32211 1 123468999999999999988764
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.13 E-value=6.4e-06 Score=73.89 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=53.3
Q ss_pred cceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-CCcc--ccCCCCccCeeecCchhhHHHHHHHhcCCC
Q 039556 143 ERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-PRQY--LSSSNFSMPLVTVNPKDWELVKKYIINTEN 213 (515)
Q Consensus 143 ~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~g~~--~~~~~~~~P~~~i~~~~g~~l~~~~~s~~~ 213 (515)
.|||+|+ +||.|.+.+| ..+++++||+++|++|+ ++.. ...+...+|.+.+ .++|++|++.++.+..
T Consensus 55 ~g~IaLv--~rg~c~f~~K-~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~G~~ 124 (129)
T cd02124 55 SGYIVLV--RRGTCTFATK-AANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALAAGSN 124 (129)
T ss_pred cCeEEEE--ECCCCCHHHH-HHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHhcCCe
Confidence 4999999 9999999999 99999999999999988 3321 1122334566666 9999999999987754
No 61
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.82 E-value=6.5e-05 Score=67.14 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccceEEEEeecCCCc--chhhhhHHHHHHhcCceeEEEcC-CCccc------c--CCCCccCeeecCchhhHHHHHHHhc
Q 039556 142 KERKYIFCAYDYDGN--VTVYQQFKEVQRIGAAGAVFSSD-PRQYL------S--SSNFSMPLVTVNPKDWELVKKYIIN 210 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~--~~~~k~~~~v~~aGa~gvi~~n~-~g~~~------~--~~~~~~P~~~i~~~~g~~l~~~~~s 210 (515)
..||||++ ++|.| .+.+| .++++++||+|+|++|+ .+... . .....+|++.|+.++|+.|...++.
T Consensus 43 v~GkIvlv--~~g~~~~~~~~k-~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~ 119 (127)
T cd04819 43 LEGKIAVV--KRDDPDVDRKEK-YAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAER 119 (127)
T ss_pred CCCeEEEE--EcCCCchhHHHH-HHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhc
Confidence 44999999 99998 78889 99999999999999987 33211 1 1235699999999999999999876
Q ss_pred CC
Q 039556 211 TE 212 (515)
Q Consensus 211 ~~ 212 (515)
+.
T Consensus 120 g~ 121 (127)
T cd04819 120 ND 121 (127)
T ss_pred CC
Confidence 54
No 62
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=97.64 E-value=0.00024 Score=74.71 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=38.9
Q ss_pred CCCCCCceEeC---CCcEEeeeCCCCCCCCCCCCCccccceEEecCcccchhHHHHHHHHHHhhCC
Q 039556 246 PWILKPDILAP---GVDILAAWVPNRPVKPIRKSDYLFSDYALMSGTSISCPHVAGIAALLKAMQR 308 (515)
Q Consensus 246 ~~~lKPdi~AP---G~~I~sa~~~~~~~~~~~~~~~~~~~~~~~SGTSmAaPhVAG~aALl~~~~p 308 (515)
..+-+|||+|. +...+-.+. +.+..+.|||+|||++||++||+.|++.
T Consensus 249 ~gR~~PDVaa~a~~~~g~~i~~~---------------g~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 249 SGRGVPDVAANADPGTGYLVVVN---------------GQWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred CCCcCCeeecccCCCCCEEEEEC---------------CeEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 37889999998 455544332 4788899999999999999999999864
No 63
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.16 E-value=0.0013 Score=59.44 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=53.8
Q ss_pred CccceEEEEeecCCCc------chhhhh------HHHHHHhcCceeEEEcC-CCc--------ccc-CCCCccCeeecCc
Q 039556 141 SKERKYIFCAYDYDGN------VTVYQQ------FKEVQRIGAAGAVFSSD-PRQ--------YLS-SSNFSMPLVTVNP 198 (515)
Q Consensus 141 ~~~GkIvlc~~~~g~~------~~~~k~------~~~v~~aGa~gvi~~n~-~g~--------~~~-~~~~~~P~~~i~~ 198 (515)
++.||||++ +++.| .+..|. .+.++++||+|+|++|. .+. ... .....+|++.|+.
T Consensus 37 ~v~GKIvlv--~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ 114 (134)
T cd04815 37 AVKGKIVFF--NQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISV 114 (134)
T ss_pred hcCCeEEEe--cCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEech
Confidence 344999999 99999 776662 47899999999999985 221 111 1134699999999
Q ss_pred hhhHHHHHHHhcCCC
Q 039556 199 KDWELVKKYIINTEN 213 (515)
Q Consensus 199 ~~g~~l~~~~~s~~~ 213 (515)
++++.|...++.+..
T Consensus 115 ed~~~L~r~l~~g~~ 129 (134)
T cd04815 115 EDADMLERLAARGKP 129 (134)
T ss_pred hcHHHHHHHHhCCCC
Confidence 999999998887654
No 64
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.93 E-value=0.0018 Score=61.36 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=52.3
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCC---Ccc-----------------cc------C---------
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDP---RQY-----------------LS------S--------- 186 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~---g~~-----------------~~------~--------- 186 (515)
..|||||| ++|.|.+.+| ..+|+++||+|+|++++. +.. .. .
T Consensus 54 v~GkIvLv--r~G~~~~~~K-v~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 54 VNGSVVLV--RAGKISFAEK-VANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCeEEEE--ECCCCCHHHH-HHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 34999999 9999999999 999999999999999871 110 00 0
Q ss_pred -CCCccCeeecCchhhHHHHHHHhcC
Q 039556 187 -SNFSMPLVTVNPKDWELVKKYIINT 211 (515)
Q Consensus 187 -~~~~~P~~~i~~~~g~~l~~~~~s~ 211 (515)
....||++-|+.+++..|+..+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235889999999999999987543
No 65
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.68 E-value=0.047 Score=46.32 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=60.9
Q ss_pred ceEEEEEEEEeccCCCeeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEecccccccCCCCCcceEEEEEEEeeC
Q 039556 418 ASFTFKWVLTNVDDTSSVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDLGITVSPKCNYLGNFGYLTWHENI 497 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~~~G~i~~~~~~ 497 (515)
...+.+.+|+|.|..+..|++.......-.++++|..=.+ ++|++.+++|+|.+.. .. +.+.+.|.. .-
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-----~~---g~~~~~l~i--~~ 88 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-----PL---GDYEGSLVI--TT 88 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-----CC---ceEEEEEEE--EE
Confidence 4567778899999999999997654334567778877677 8999999999999654 22 467899988 43
Q ss_pred CeeEEEeEEEEE
Q 039556 498 GKHMVRSPIVSA 509 (515)
Q Consensus 498 ~~~~vr~P~~v~ 509 (515)
.+..+.+|+-+.
T Consensus 89 e~~~~~i~v~a~ 100 (102)
T PF14874_consen 89 EGGSFEIPVKAE 100 (102)
T ss_pred CCeEEEEEEEEE
Confidence 345788887664
No 66
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.84 E-value=0.016 Score=61.63 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=54.4
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC-C-------CccccCCCCccCeeecCchhhHHHHHHHhcCC
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD-P-------RQYLSSSNFSMPLVTVNPKDWELVKKYIINTE 212 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~-~-------g~~~~~~~~~~P~~~i~~~~g~~l~~~~~s~~ 212 (515)
..||+++. .||.|.|.+| .+.++++||.+++++|+ . ++......-.||++++..++++.+..-..++.
T Consensus 94 l~~~~~~v--~RGnC~Ft~K-a~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 94 LSGKVALV--FRGNCSFTEK-AKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred ccceeEEE--ecccceeehh-hhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 34999999 9999999999 99999999999999998 1 11112234679999999999999987444443
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.31 E-value=0.082 Score=42.81 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=38.4
Q ss_pred ceEEEEEEEEeccCCC-eeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEeccc
Q 039556 418 ASFTFKWVLTNVDDTS-SVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDLG 475 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~ 475 (515)
...+++.+|+|.|+.. ...++++..|.|-.+...|..+.--++|++++++++|+++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 5778999999999755 468888899999998888888763389999999999999863
No 68
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.03 E-value=0.13 Score=47.43 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=40.3
Q ss_pred ccceEEEEeecCCC------------------cchhhhhHHHHHHhcCceeEEEcCCCcc-----ccCCCCccCeeecCc
Q 039556 142 KERKYIFCAYDYDG------------------NVTVYQQFKEVQRIGAAGAVFSSDPRQY-----LSSSNFSMPLVTVNP 198 (515)
Q Consensus 142 ~~GkIvlc~~~~g~------------------~~~~~k~~~~v~~aGa~gvi~~n~~g~~-----~~~~~~~~P~~~i~~ 198 (515)
..||||++ .++. |.+..| ..+++++||+|||++++.... .......-.++.++.
T Consensus 46 VkGKIVlv--~~g~P~~~~~~~~~~~~~~~~~~~~~~K-~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~~~~~~~~~~~ 122 (151)
T cd04822 46 VKGKIVLV--LRHEPQEDDANSRFNGPGLTRHAGLRYK-ATNARRHGAAAVIVVNGPNSHSGDADRLPRFGGTAPQRVDI 122 (151)
T ss_pred CCCeEEEE--EcCCcccccccccccccccccccCHHHH-HHHHHHCCCeEEEEEeCCcccCcccccccccCccceEEech
Confidence 34999999 7663 456788 999999999999999982111 111111122566666
Q ss_pred hhhHHHHH
Q 039556 199 KDWELVKK 206 (515)
Q Consensus 199 ~~g~~l~~ 206 (515)
...+.++.
T Consensus 123 ~~~~~~~~ 130 (151)
T cd04822 123 AAADPWFT 130 (151)
T ss_pred HHHHHHhh
Confidence 66666655
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=93.83 E-value=0.068 Score=48.72 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=29.6
Q ss_pred cceEEEEeecCCCc------------------chhhhhHHHHHHhcCceeEEEcC
Q 039556 143 ERKYIFCAYDYDGN------------------VTVYQQFKEVQRIGAAGAVFSSD 179 (515)
Q Consensus 143 ~GkIvlc~~~~g~~------------------~~~~k~~~~v~~aGa~gvi~~n~ 179 (515)
.||||++ .+|.| .+..| .++++++||+|||++++
T Consensus 47 kGKIVlv--~~g~P~~~~~~~~~~~~~~~~~~~~~~K-~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 47 KGKVVVV--LRNDPQGEPGAGDFGGKAMTYYGRWTYK-YEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCcEEEE--EcCCCCcccccccccccccccccCHHHH-HHHHHHCCCcEEEEEeC
Confidence 4999999 88877 35568 89999999999999997
No 70
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.091 Score=54.47 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=51.9
Q ss_pred ceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCCCcc--c----cCCCCccCeeecCchhhHHHHHHHhc
Q 039556 144 RKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDPRQY--L----SSSNFSMPLVTVNPKDWELVKKYIIN 210 (515)
Q Consensus 144 GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~g~~--~----~~~~~~~P~~~i~~~~g~~l~~~~~s 210 (515)
..++|+ .||+|+|.+| +.+|+++|.+++|++|+.+.. . ......+++++++...|+.|.+|...
T Consensus 80 ~~laLI--~Rg~CsFe~K-v~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~ 149 (348)
T KOG4628|consen 80 SFLALI--RRGGCSFEDK-VLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGR 149 (348)
T ss_pred ceEEEE--EccCCchHHH-HhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcc
Confidence 679999 9999999999 999999999999999983322 1 12234588999999999999987543
No 71
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.53 E-value=0.088 Score=47.70 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=29.9
Q ss_pred ccceEEEEeecCCCcc------------hhhhhHHHHHHhcCceeEEEcC
Q 039556 142 KERKYIFCAYDYDGNV------------TVYQQFKEVQRIGAAGAVFSSD 179 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~------------~~~k~~~~v~~aGa~gvi~~n~ 179 (515)
..||||++ .+|.|. +..| .++++++||+|||++++
T Consensus 48 VkGKIVlv--~~g~p~~~~~~~~~~~~~~~~K-~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 48 VKGKIVVV--LSGGPAGIPSEEGAHAHSSNEK-ARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCeEEEE--EcCCCCccccccccccccHHHH-HHHHHHCCCeEEEEEeC
Confidence 34999999 888763 5578 99999999999999997
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.37 E-value=0.095 Score=48.08 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=31.9
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD 179 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~ 179 (515)
+.||||++ +.|...+-.| .++|+++||+|+|++.+
T Consensus 39 v~GkIvi~--RyG~~~RG~K-v~~A~~~GA~GviIYsD 73 (153)
T cd02131 39 VTNQIALL--KLGQAPLLYK-LSLLEEAGFGGVLLYVD 73 (153)
T ss_pred ccceEEEE--eccCcchHHH-HHHHHHCCCeEEEEecC
Confidence 34999999 8888888899 99999999999999987
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=92.99 E-value=0.11 Score=50.87 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.6
Q ss_pred ccceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcC
Q 039556 142 KERKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSD 179 (515)
Q Consensus 142 ~~GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~ 179 (515)
..||||++ ++|.+.+.+| .++|+++||+|+|++++
T Consensus 70 v~GKIvLv--r~G~~~~~~K-v~~A~~~GA~gVIiy~D 104 (220)
T cd02121 70 VKGKIVIA--RYGGIFRGLK-VKNAQLAGAVGVIIYSD 104 (220)
T ss_pred CCCeEEEE--ECCCccHHHH-HHHHHHcCCEEEEEEeC
Confidence 34999999 8898887889 99999999999999997
No 74
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.22 E-value=0.84 Score=39.87 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=40.6
Q ss_pred eEEEEEEEEeccCCCeeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEeccc
Q 039556 419 SFTFKWVLTNVDDTSSVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDLG 475 (515)
Q Consensus 419 ~~t~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~ 475 (515)
.-..+.+|+|..+.+.+|+++++.++|+++......+.+ ++|++..+.|.+.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 446788899999999999999999889999665588999 89999999999999864
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.80 E-value=0.16 Score=46.40 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=54.8
Q ss_pred ceEEEEeecCCCcchhhhhHHHHHHhcCceeEEEcCC--Cccc----------cCCCCccCeeecCchhhHHHHHHHhcC
Q 039556 144 RKYIFCAYDYDGNVTVYQQFKEVQRIGAAGAVFSSDP--RQYL----------SSSNFSMPLVTVNPKDWELVKKYIINT 211 (515)
Q Consensus 144 GkIvlc~~~~g~~~~~~k~~~~v~~aGa~gvi~~n~~--g~~~----------~~~~~~~P~~~i~~~~g~~l~~~~~s~ 211 (515)
|.|+|+ +||+|+|..| ..+++++||..+|+-.+. .... ..+...+|++++-..+|..++.-++.-
T Consensus 88 d~vaL~--eRGeCSFl~K-tl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~r~ 164 (193)
T KOG3920|consen 88 DSVALM--ERGECSFLVK-TLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLKRY 164 (193)
T ss_pred CcEEEE--ecCCceeeeh-hhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHHHh
Confidence 789999 9999999999 999999999999887662 1111 123467999999888887777666655
Q ss_pred CCceEEEEe
Q 039556 212 ENASVSIKF 220 (515)
Q Consensus 212 ~~~~~~i~~ 220 (515)
..+-+.|..
T Consensus 165 ~r~ha~i~I 173 (193)
T KOG3920|consen 165 FRDHAKIDI 173 (193)
T ss_pred CCccEEEec
Confidence 544455543
No 76
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.04 E-value=6.5 Score=34.83 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=49.9
Q ss_pred ceEEEEEEEEeccCCCeeeEEEEEC----CCCc--------------------EEEEecceEEEecCCcEEEEEEEEEec
Q 039556 418 ASFTFKWVLTNVDDTSSVNTAAVKA----PAGM--------------------KVVVQPETATFDRKYSKAEFNLTLSID 473 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~~v~~----p~g~--------------------~v~v~P~~l~~~~~g~~~~~~Vt~~~~ 473 (515)
..+++..+|+|.++.+.+|.+.+.. ..|+ -+++ |..+++ +++|++.++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 6789999999999999999998752 1110 1333 555888 899999999999998
Q ss_pred ccccccCCCCCcceEEEEEE
Q 039556 474 LGITVSPKCNYLGNFGYLTW 493 (515)
Q Consensus 474 ~~~~~~~~~~~~~~~G~i~~ 493 (515)
.. .- . +.+-|-|.+
T Consensus 105 ~~----~f-~-G~ilGGi~~ 118 (121)
T PF06030_consen 105 KK----AF-D-GIILGGIYF 118 (121)
T ss_pred CC----Cc-C-CEEEeeEEE
Confidence 63 22 3 566677766
No 77
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=88.87 E-value=0.091 Score=54.25 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=51.2
Q ss_pred eEEecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC-CCc-cc-ccCCCCCCCCCCCCCCccCccccC
Q 039556 283 YALMSGTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNA-NST-IT-DIRIGVSGTPLDFGSGHVNPNKAM 358 (515)
Q Consensus 283 ~~~~SGTSmAaPhVAG~aALl~~~~p~~s~~~i~~~L~~tA~~~~~~-~~~-~~-~~~~~~~~~~~~~GaG~vn~~~A~ 358 (515)
...-||||.|+|-.||+-||.++++|.++-.+++-+-.-|.+..... +.- .. ........-...+|+|.+|+-+-+
T Consensus 378 t~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv 456 (629)
T KOG3526|consen 378 TRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMV 456 (629)
T ss_pred ecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHH
Confidence 44679999999999999999999999999999987766665543211 100 00 000112223457899999987643
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=84.71 E-value=9.7 Score=33.20 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=41.4
Q ss_pred eEEEEEEEEeccCCCeeeEEEEEC---CC----CcEEEEecceEEEecCCcEEEEEEEEEe
Q 039556 419 SFTFKWVLTNVDDTSSVNTAAVKA---PA----GMKVVVQPETATFDRKYSKAEFNLTLSI 472 (515)
Q Consensus 419 ~~t~~rtvtNvg~~~~tY~~~v~~---p~----g~~v~v~P~~l~~~~~g~~~~~~Vt~~~ 472 (515)
....+.+|+|.|+.+..+.+.+.. .. .-.+.++|..+.+ ++|+++.+.| +..
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 457788999999988888888764 11 1257799999999 7999999999 663
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.14 E-value=13 Score=40.12 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=49.8
Q ss_pred ceEEEEEEEEeccCCCe-eeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEeccc
Q 039556 418 ASFTFKWVLTNVDDTSS-VNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDLG 475 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~-tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~ 475 (515)
...++...+.|.|+.+. .-++++..|.|-++.|+|.++---++|++.++.+|++++..
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~ 455 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED 455 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC
Confidence 46778888999998774 46788999999999999998765589999999999999974
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=77.54 E-value=2.7 Score=39.04 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=16.8
Q ss_pred hhhHHHHHHhcCceeEEEcC
Q 039556 160 YQQFKEVQRIGAAGAVFSSD 179 (515)
Q Consensus 160 ~k~~~~v~~aGa~gvi~~n~ 179 (515)
.| .+.++++||+|+|+++.
T Consensus 83 ~K-~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 83 YK-YEEAARQGAAGALIVHE 101 (157)
T ss_pred HH-HHHHHHCCCeEEEEEeC
Confidence 37 88999999999999976
No 81
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=74.66 E-value=25 Score=29.61 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=40.9
Q ss_pred ceEEEEEEEEeccCCCeeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEecc
Q 039556 418 ASFTFKWVLTNVDDTSSVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 474 (515)
.......+|+|.++...-|++....|.... |.|..-.+ .+|++..+.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 346777899999999999999888887665 67998888 7999999999888753
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.47 E-value=14 Score=40.11 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=47.8
Q ss_pred eEEEEEEEEeccCCCeeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEecc
Q 039556 419 SFTFKWVLTNVDDTSSVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 419 ~~t~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 474 (515)
....+.++.|..+.+.+|+++++..++.++...++.+.+ ++||+.++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 446777899999999999999999999998876557888 8999999999999875
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.39 E-value=1e+02 Score=33.53 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=45.4
Q ss_pred ceEEEEEEEEeccCCCeeeEEEEE-CCCCcEEEEecc-----eEEEecCCcEEEEEEEEEeccc
Q 039556 418 ASFTFKWVLTNVDDTSSVNTAAVK-APAGMKVVVQPE-----TATFDRKYSKAEFNLTLSIDLG 475 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~~v~-~p~g~~v~v~P~-----~l~~~~~g~~~~~~Vt~~~~~~ 475 (515)
.+..++.++.|.|....+|.+++. .|+|-....+-. ++.+ .+||+++|+|.+.++..
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 466788899999999999999998 788765554433 3555 69999999999998753
No 84
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=63.69 E-value=24 Score=25.34 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=26.2
Q ss_pred EEEEeccCCCeeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEE
Q 039556 424 WVLTNVDDTSSVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTL 470 (515)
Q Consensus 424 rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~ 470 (515)
.+++|.|+.+..-+ .+...-|= .+++.+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 57899998764322 22222232 2233444456 799999998874
No 85
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=63.63 E-value=63 Score=29.45 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=47.5
Q ss_pred eEEEEEEEEeccCCC-eeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEecccccccCCCCCcceEEEEEE
Q 039556 419 SFTFKWVLTNVDDTS-SVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDLGITVSPKCNYLGNFGYLTW 493 (515)
Q Consensus 419 ~~t~~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~~~G~i~~ 493 (515)
...+-.-+-|--+.. .--++....-.++++.=.|..+++ .|++.++++.++++... . . ++.||+|+|
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSt-----e-t-GvIfG~I~Y 137 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSST-----E-T-GVIFGNIVY 137 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEec-----c-C-CEEEEEEEE
Confidence 344444555544322 223344444567899889999999 89999999999998763 2 3 799999999
No 86
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=62.42 E-value=21 Score=28.80 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=28.8
Q ss_pred EEEEecceEEEecCCcEEEEEEEEEecccccccCCCCCcceEEEEEEE
Q 039556 447 KVVVQPETATFDRKYSKAEFNLTLSIDLGITVSPKCNYLGNFGYLTWH 494 (515)
Q Consensus 447 ~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~~~G~i~~~ 494 (515)
.|++.|..+++ ..|+++.|+++++.... .- ...+.|.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---------~~-~~~v~w~ 40 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA---------KV-TGKVTWT 40 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC---------Cc-cceEEEE
Confidence 57899999999 69999999999765431 12 6788895
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=60.65 E-value=41 Score=27.39 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=33.2
Q ss_pred ceEEEEEEEEeccCCC-eeeEEEEECCCCcEEEEecceEEEecCCcEEEEEEEEEecc
Q 039556 418 ASFTFKWVLTNVDDTS-SVNTAAVKAPAGMKVVVQPETATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 474 (515)
...+++.+|+|.|... ..+.+.+... |..+ -+...-.+ ++|+++++++++..+.
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~-~~~~i~~L-~~g~~~~v~~~~~~~~ 73 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV-STVTIPSL-APGESETVTFTWTPPS 73 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE-EEEEESEB--TTEEEEEEEEEE-SS
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee-ccEEECCc-CCCcEEEEEEEEEeCC
Confidence 5788999999999864 5566666532 3333 11111256 7999999888888763
No 88
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=55.86 E-value=11 Score=45.00 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.6
Q ss_pred ceEEecCcccchhHHHHHHHHHHhhC
Q 039556 282 DYALMSGTSISCPHVAGIAALLKAMQ 307 (515)
Q Consensus 282 ~~~~~SGTSmAaPhVAG~aALl~~~~ 307 (515)
...+.-|||.|+|..||+.|++-|..
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHh
Confidence 44577899999999999999998873
No 89
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=53.91 E-value=92 Score=26.30 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=36.7
Q ss_pred ceEEEEEEEEeccCCC-eeeE-----EEEECCCCcE---EEEecceEEEecCCcEEEEEEEEEecc
Q 039556 418 ASFTFKWVLTNVDDTS-SVNT-----AAVKAPAGMK---VVVQPETATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~-~tY~-----~~v~~p~g~~---v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 474 (515)
...++..+++|..+.. .+=+ .++. -.|+. .......+++ ++|++.++++++++..
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~-ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVE-YTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEE-CTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEE-ECCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5788999999998876 4422 2223 35663 5666777788 7999999999998754
No 90
>PLN03080 Probable beta-xylosidase; Provisional
Probab=51.19 E-value=67 Score=37.57 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=32.8
Q ss_pred eEEEEEEEEeccCCC--eeeEEEEECCCC-----cEEEEecceEEEecCCcEEEEEEEEEe
Q 039556 419 SFTFKWVLTNVDDTS--SVNTAAVKAPAG-----MKVVVQPETATFDRKYSKAEFNLTLSI 472 (515)
Q Consensus 419 ~~t~~rtvtNvg~~~--~tY~~~v~~p~g-----~~v~v~P~~l~~~~~g~~~~~~Vt~~~ 472 (515)
..+++.+|||+|+.. ++=.+-+..|.. ++--+--+++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 478999999999844 333333444421 111112234456 79999999888876
No 91
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=44.61 E-value=12 Score=37.11 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=19.3
Q ss_pred eecceEEeecCCCCCCCCceeeecc
Q 039556 84 IEERIFAECSAGNLGPDAYSIFNGA 108 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~~~tv~n~a 108 (515)
.++||+|++||||+|+...+..+++
T Consensus 125 ~~~gi~vV~aaGN~g~~~~~~~~Pa 149 (255)
T cd07479 125 TANNIIMVSAIGNDGPLYGTLNNPA 149 (255)
T ss_pred HHCCcEEEEEcCCCCCCcccccCcc
Confidence 5789999999999998655544444
No 92
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=43.46 E-value=14 Score=38.13 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=19.7
Q ss_pred eecceEEeecCCCCCCCCceeeecc
Q 039556 84 IEERIFAECSAGNLGPDAYSIFNGA 108 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~~~tv~n~a 108 (515)
.++||++++||||+|+...++.+++
T Consensus 165 ~~~Gv~vV~AAGN~g~~~~~~~~Pa 189 (311)
T cd07497 165 TYTGVPIVSAAGNGGPGYGTITAPG 189 (311)
T ss_pred hcCCCEEEEeCCCCCCCCccccCcc
Confidence 4899999999999998655555544
No 93
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=43.37 E-value=1.4e+02 Score=26.66 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.5
Q ss_pred EEEecCCcEEEEEEEEEecc
Q 039556 455 ATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 455 l~~~~~g~~~~~~Vt~~~~~ 474 (515)
++.+.+||.+.|.|.+.+..
T Consensus 75 VTWtapgqf~~f~vs~~~~P 94 (124)
T cd08523 75 VTWKAPSQEVRAKVSLRAEP 94 (124)
T ss_pred EEEcCCCceEEEEEEeecCC
Confidence 66667999999999998765
No 94
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=42.98 E-value=99 Score=30.67 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=38.9
Q ss_pred eEEEEEEEEeccCCCeeeEEEEE---CC---C----------CcEEEEecceEEEecCCcEEEEEEEEEe
Q 039556 419 SFTFKWVLTNVDDTSSVNTAAVK---AP---A----------GMKVVVQPETATFDRKYSKAEFNLTLSI 472 (515)
Q Consensus 419 ~~t~~rtvtNvg~~~~tY~~~v~---~p---~----------g~~v~v~P~~l~~~~~g~~~~~~Vt~~~ 472 (515)
......+|.|.|+....+++.+. .| . .-.+-++|..|.+ ++|+++.|.|.-..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 34556779999998887777754 22 1 1258899999999 89999998876544
No 95
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=41.59 E-value=79 Score=36.89 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=41.5
Q ss_pred CCCCCcEEEEecCCC------CceEEEEEEEEeccCCC--eeeEEEEECCCC-c-----EEEEecceEEEecCCcEEEEE
Q 039556 402 DLNYPSFMIILNNTK------SASFTFKWVLTNVDDTS--SVNTAAVKAPAG-M-----KVVVQPETATFDRKYSKAEFN 467 (515)
Q Consensus 402 ~lN~PSi~~~~~~~~------~~~~t~~rtvtNvg~~~--~tY~~~v~~p~g-~-----~v~v~P~~l~~~~~g~~~~~~ 467 (515)
-|.|-.|..+..... ....+++.+|||+|+.. ++=.+-+..|.+ + .+.- -+++.+ ++||+++++
T Consensus 645 GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~g-F~Kv~L-~pGes~~V~ 722 (765)
T PRK15098 645 GLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKG-FEKIML-KPGETQTVS 722 (765)
T ss_pred CCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccC-ceeEeE-CCCCeEEEE
Confidence 566666655432110 24688999999999743 343343444432 1 1111 123456 799999999
Q ss_pred EEEEecc
Q 039556 468 LTLSIDL 474 (515)
Q Consensus 468 Vt~~~~~ 474 (515)
+++....
T Consensus 723 ~~l~~~~ 729 (765)
T PRK15098 723 FPIDIEA 729 (765)
T ss_pred EeecHHH
Confidence 8888653
No 96
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.95 E-value=1.6e+02 Score=23.99 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=12.5
Q ss_pred ceEEEecCCcEEEEEEEEEecc
Q 039556 453 ETATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 453 ~~l~~~~~g~~~~~~Vt~~~~~ 474 (515)
...++ ++||+++|+.++....
T Consensus 52 ~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 52 QEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEE--TT-EEEEEEEESS--
T ss_pred eEEEE-CCCCEEEEEEEECCCC
Confidence 34566 7899999887776543
No 97
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=34.55 E-value=22 Score=38.51 Aligned_cols=74 Identities=20% Similarity=0.105 Sum_probs=52.0
Q ss_pred EecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCcccccCCCCCCCCCCCCCCccCccccCC
Q 039556 285 LMSGTSISCPHVAGIAALLKAMQRDWSSAAIRSAMMTTAYLLDNANSTITDIRIGVSGTPLDFGSGHVNPNKAMD 359 (515)
Q Consensus 285 ~~SGTSmAaPhVAG~aALl~~~~p~~s~~~i~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 359 (515)
--.|||-++|..||+.+|.++.+|.++-.++..++..++.........-+....+. .-...+|.|++|...-..
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~-~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGG-LVSHLYGFGLLDAKALVS 324 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCc-eeeeeecccccCcchhhh
Confidence 35699999999999999999999999988888888888765443222211111111 122378999999877554
No 98
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=33.27 E-value=41 Score=23.60 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 039556 300 AALLKAMQRDWSSAAIRSAMMTT 322 (515)
Q Consensus 300 aALl~~~~p~~s~~~i~~~L~~t 322 (515)
+--|++.+|+|++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 34588999999999999999654
No 99
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=33.02 E-value=3.2e+02 Score=26.83 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=35.6
Q ss_pred ceEEEEEEEEeccCCCeeeEE--EEECCCC---cEEEEecceEEEecCCcEEEEEEEEEe
Q 039556 418 ASFTFKWVLTNVDDTSSVNTA--AVKAPAG---MKVVVQPETATFDRKYSKAEFNLTLSI 472 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~--~v~~p~g---~~v~v~P~~l~~~~~g~~~~~~Vt~~~ 472 (515)
+....+.+|+|.++.. .|-+ -++...+ .-+-|+|..+.+ ++|+.+.+.|....
T Consensus 35 ~~~~~si~i~N~~~~~-~~LvQsWv~~~~~~~~~pfivtPPl~rl-~p~~~q~lRIi~~~ 92 (228)
T PRK15208 35 SKKEASLTVNNKSKTE-EFLIQSWIDDANGNKKTPFIITPPLFKL-DPTKNNVLRIVNIT 92 (228)
T ss_pred CCceEEEEEEeCCCCC-cEEEEEEEECCCCCccCCEEECCCeEEE-CCCCccEEEEEECC
Confidence 3566778888987532 2333 2332221 337899999999 79999999987653
No 100
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=32.48 E-value=24 Score=37.97 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=18.9
Q ss_pred eecceEEeecCCCCCCCCceeeec
Q 039556 84 IEERIFAECSAGNLGPDAYSIFNG 107 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~~~tv~n~ 107 (515)
.++||++++||||+||...++..+
T Consensus 273 ~~~GVlvVaAAGN~G~~~~tv~~P 296 (412)
T cd04857 273 NKHGVIFVSSAGNNGPALSTVGAP 296 (412)
T ss_pred HhCCCEEEEECCCCCCCccccCCc
Confidence 358999999999999876655443
No 101
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=32.38 E-value=1e+02 Score=32.53 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=28.6
Q ss_pred ceEEEEEEEEeccCCCee---e-EEEEE--C----------CC----CcEEEEecceEEEecCCcEEEEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSSV---N-TAAVK--A----------PA----GMKVVVQPETATFDRKYSKAEFNLTLS 471 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~t---Y-~~~v~--~----------p~----g~~v~v~P~~l~~~~~g~~~~~~Vt~~ 471 (515)
...+++.+|||.|+.+.. | ++.+. . |. .--++|+|+. -+ ++||+++++|+++
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-pI-~PGETrtl~V~a~ 334 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-PI-APGETRTLTVEAQ 334 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-Cc-CCCceEEEEEEee
Confidence 678899999999987632 1 12222 1 11 1125566764 23 6999999999875
No 102
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=29.83 E-value=3.8e+02 Score=32.02 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 039556 299 IAALLKAMQRDWSSAAIRSAMMTTA 323 (515)
Q Consensus 299 ~aALl~~~~p~~s~~~i~~~L~~tA 323 (515)
+.-=++|+||+.+.+|+......-+
T Consensus 322 ~l~el~~~~p~~~~~~l~~~a~~~~ 346 (928)
T TIGR00845 322 ILKELKQKHPDKDLEQLEEMANYQV 346 (928)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 3344678899999999876654433
No 103
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.54 E-value=1.3e+02 Score=25.82 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=29.8
Q ss_pred ceEEEEEEEEeccCCCe----eeEEEEE---------CCCCcEEEEec-ceEEEecCCcEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSS----VNTAAVK---------APAGMKVVVQP-ETATFDRKYSKAEFNL 468 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~V 468 (515)
+..+++.+|+|.||.+- -|++--. ..-|..+.+-. ..+.| +||+++++++
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEE
Confidence 45678889999999763 3443211 11255555411 23567 7899988765
No 104
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.37 E-value=2.1e+02 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=36.2
Q ss_pred ceEEEEEEEEeccCCCeeeEE--EEECC---CCcEEEEecceEEEecCCcEEEEEEEEEe
Q 039556 418 ASFTFKWVLTNVDDTSSVNTA--AVKAP---AGMKVVVQPETATFDRKYSKAEFNLTLSI 472 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~--~v~~p---~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~ 472 (515)
.....+.+|+|.++.+ |.+ .++.. ....+-|+|..+.+ ++|+++.++|....
T Consensus 38 ~~~~~si~v~N~~~~p--~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~ 94 (230)
T PRK09918 38 SDGEGSINVKNTDSNP--ILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKS 94 (230)
T ss_pred CCCeEEEEEEcCCCCc--EEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECC
Confidence 3456778888988753 443 23221 12458899999999 79999999887653
No 105
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=27.50 E-value=33 Score=34.85 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=17.4
Q ss_pred eecceEEeecCCCCCCCCcee
Q 039556 84 IEERIFAECSAGNLGPDAYSI 104 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~~~tv 104 (515)
.++||++++||||+|+...+.
T Consensus 201 ~~~gilvV~aAGN~g~~~~~~ 221 (307)
T cd04852 201 VEAGIFVAASAGNSGPGASTV 221 (307)
T ss_pred HhCCCEEEEECCCCCCCCCcc
Confidence 689999999999999765443
No 106
>PRK13203 ureB urease subunit beta; Reviewed
Probab=26.20 E-value=1.3e+02 Score=25.80 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=29.5
Q ss_pred ceEEEEEEEEeccCCCe----eeEEEEE---------CCCCcEEEEecc--eEEEecCCcEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSS----VNTAAVK---------APAGMKVVVQPE--TATFDRKYSKAEFNL 468 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~p~g~~v~v~P~--~l~~~~~g~~~~~~V 468 (515)
+..+++.+|+|.||.+. -|++--. ..-|..+.+ |+ .+.| +||+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVEL 81 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 45678889999999763 2433111 112444444 32 3567 7899988765
No 107
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.02 E-value=1.1e+02 Score=26.27 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=28.8
Q ss_pred EEEEEEEEeccCCCe----eeEEEEE---------CCCCcEEEEec-ceEEEecCCcEEEEEE
Q 039556 420 FTFKWVLTNVDDTSS----VNTAAVK---------APAGMKVVVQP-ETATFDRKYSKAEFNL 468 (515)
Q Consensus 420 ~t~~rtvtNvg~~~~----tY~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~V 468 (515)
.+++.+|+|.||.+. -|++--. ..-|..+.+-. ..+.| +||+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEE
Confidence 578889999999763 3443211 11244454421 23567 7899988765
No 108
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.19 E-value=59 Score=24.48 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=24.8
Q ss_pred cceEEecCcccchhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 039556 281 SDYALMSGTSISCPHVAGIAA------LLKAMQRDWSSAAIRSAMM 320 (515)
Q Consensus 281 ~~~~~~SGTSmAaPhVAG~aA------Ll~~~~p~~s~~~i~~~L~ 320 (515)
++--.+.||-+..=.+....+ -+.+.||.+++++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455678888887666665532 3456689999999999874
No 109
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.00 E-value=1.2e+02 Score=26.08 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=29.8
Q ss_pred ceEEEEEEEEeccCCCe----eeEEEEE---------CCCCcEEEEec-ceEEEecCCcEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSS----VNTAAVK---------APAGMKVVVQP-ETATFDRKYSKAEFNL 468 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~V 468 (515)
+..+++.+|+|.||.+. -|++--. ..-|..+.+-. ..+.| +||+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 45678889999999763 3443211 11244554411 23567 7999988765
No 110
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=30 Score=38.67 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.0
Q ss_pred ecceEEeecCCCCCCCCceeeecc
Q 039556 85 EERIFAECSAGNLGPDAYSIFNGA 108 (515)
Q Consensus 85 ~~GI~vv~sAGN~Gp~~~tv~n~a 108 (515)
...|..+.++||+||.-+|+.|++
T Consensus 318 AnNvIMvSAiGNDGPLYGTLNNPa 341 (1033)
T KOG4266|consen 318 ANNVIMVSAIGNDGPLYGTLNNPA 341 (1033)
T ss_pred cCcEEEEEecCCCCcceeecCCcc
Confidence 677899999999999999999988
No 111
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=23.90 E-value=36 Score=15.73 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=4.2
Q ss_pred ecCCCC
Q 039556 235 YFSSRG 240 (515)
Q Consensus 235 ~fSs~G 240 (515)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 112
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.23 E-value=5.3e+02 Score=24.43 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=36.3
Q ss_pred ceEEEEEEEEeccCCCeeeEEEEEC---C-CCcEEEEecce---EEEecCCcEEEEEEEEEecc
Q 039556 418 ASFTFKWVLTNVDDTSSVNTAAVKA---P-AGMKVVVQPET---ATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~tY~~~v~~---p-~g~~v~v~P~~---l~~~~~g~~~~~~Vt~~~~~ 474 (515)
...+++.+|.|+|+. .-|.+++.. | +.+++.---.+ =++ ++|+..+..+++.+..
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEeeee
Confidence 578999999999986 467777764 2 34443111111 123 7899888888888764
No 113
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=23.22 E-value=56 Score=26.02 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=23.6
Q ss_pred EEEEecceEEEecCCcEEEEEEEEEecc
Q 039556 447 KVVVQPETATFDRKYSKAEFNLTLSIDL 474 (515)
Q Consensus 447 ~v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 474 (515)
+|++.|..+.+ ..|++..|++++....
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~ 30 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSD 30 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECC
Confidence 57789999999 7999999999988875
No 114
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=22.46 E-value=44 Score=33.12 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=15.9
Q ss_pred eecceEEeecCCCCCCCC
Q 039556 84 IEERIFAECSAGNLGPDA 101 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~~ 101 (515)
.++||++++||||+|+..
T Consensus 133 ~~~GilvvaaAGN~g~~~ 150 (247)
T cd07491 133 LDRGILLFCSASDQGAFT 150 (247)
T ss_pred HhCCeEEEEecCCCCCcC
Confidence 679999999999998754
No 115
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.94 E-value=42 Score=32.91 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.2
Q ss_pred eecceEEeecCCCCCCC
Q 039556 84 IEERIFAECSAGNLGPD 100 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~ 100 (515)
.++||++++||||+|+.
T Consensus 117 ~~~gilvv~AaGN~g~~ 133 (239)
T cd05561 117 AARGMVLVAAAGNDGPA 133 (239)
T ss_pred HHCCCEEEEecCCCCCC
Confidence 57899999999999874
No 116
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=21.86 E-value=4.4e+02 Score=26.72 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=10.7
Q ss_pred EEEEEEEEeccCCCeeeEEE
Q 039556 420 FTFKWVLTNVDDTSSVNTAA 439 (515)
Q Consensus 420 ~t~~rtvtNvg~~~~tY~~~ 439 (515)
..++.||+|..+.+.+-.+.
T Consensus 244 ~~~~itv~N~~~~~v~v~v~ 263 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVE 263 (317)
T ss_pred EEEEEEEECCCCCCEEEEEE
Confidence 44555677766554443333
No 117
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=21.45 E-value=2.2e+02 Score=22.24 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=20.1
Q ss_pred ceEEEEEEEEeccCCCee-eEEEEECCCCcEE
Q 039556 418 ASFTFKWVLTNVDDTSSV-NTAAVKAPAGMKV 448 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~t-Y~~~v~~p~g~~v 448 (515)
...+++.+|+|.|+.... ..+.-.-|+|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 578899999999986533 3333334555543
No 118
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.37 E-value=55 Score=32.96 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=16.4
Q ss_pred eecceEEeecCCCCCCCCc
Q 039556 84 IEERIFAECSAGNLGPDAY 102 (515)
Q Consensus 84 ~~~GI~vv~sAGN~Gp~~~ 102 (515)
.++||++++||||.|+...
T Consensus 133 ~~~gvlvV~aAGN~g~~~~ 151 (291)
T cd04847 133 AEYDVLFVVSAGNLGDDDA 151 (291)
T ss_pred ccCCeEEEEECCCCCcccc
Confidence 4789999999999998654
No 119
>PRK13205 ureB urease subunit beta; Reviewed
Probab=20.91 E-value=2e+02 Score=26.48 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=30.6
Q ss_pred ceEEEEEEEEeccCCCe----eeEEEEEC---------CCCcEEEEec-ceEEEecCCcEEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSS----VNTAAVKA---------PAGMKVVVQP-ETATFDRKYSKAEFNLT 469 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~----tY~~~v~~---------p~g~~v~v~P-~~l~~~~~g~~~~~~Vt 469 (515)
+..+++.+|+|.|+.+. -|++--.. .-|..+.|-. ..+.| .||+++++++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 46678899999999763 34432111 1244554411 23567 78998887664
No 120
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=20.76 E-value=2.3e+02 Score=24.33 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=29.2
Q ss_pred ceEEEEEEEEeccCCCe----eeEEEEE---------CCCCcEEEEecc-eEEEecCCcEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSS----VNTAAVK---------APAGMKVVVQPE-TATFDRKYSKAEFNL 468 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~p~g~~v~v~P~-~l~~~~~g~~~~~~V 468 (515)
+..+.+.+|.|.||.+- -|++--. ..-|..+.+..- .+.| +||+++++++
T Consensus 18 gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRF-EPG~~k~V~L 81 (106)
T COG0832 18 GRPTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRF-EPGDEKEVEL 81 (106)
T ss_pred CCcceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEee-CCCCccEEEE
Confidence 35566777999999763 3443211 123555554222 2567 7899988665
No 121
>PRK13201 ureB urease subunit beta; Reviewed
Probab=20.36 E-value=2.2e+02 Score=25.68 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=30.0
Q ss_pred ceEEEEEEEEeccCCCe----eeEEEEE---------CCCCcEEEEec-ceEEEecCCcEEEEEEE
Q 039556 418 ASFTFKWVLTNVDDTSS----VNTAAVK---------APAGMKVVVQP-ETATFDRKYSKAEFNLT 469 (515)
Q Consensus 418 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~Vt 469 (515)
+..+++.+|+|.|+.+. -|++--. ..-|..+.+-. ..+.| +||+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 45678889999999763 3443211 11244444411 22567 78999887663
Done!