Query 039560
Match_columns 344
No_of_seqs 241 out of 1482
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 5.2E-32 1.8E-36 208.8 -0.0 73 2-75 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 7E-32 2.4E-36 213.3 -0.3 76 2-78 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.3E-30 4.4E-35 209.4 -0.6 72 1-73 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 3.3E-30 1.1E-34 204.5 -0.4 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 99.9 1E-29 3.4E-34 205.5 -0.1 70 1-71 9-78 (103)
6 2oa5_A Hypothetical protein BQ 67.1 24 0.00083 28.2 7.7 60 124-183 8-69 (110)
7 1j1d_C Troponin I, TNI; THIN f 47.3 1.2E+02 0.004 25.0 9.0 57 127-186 29-86 (133)
8 1a93_B MAX protein, coiled coi 46.5 20 0.00067 22.7 3.1 25 126-150 9-33 (34)
9 3oa7_A Head morphogenesis prot 46.2 35 0.0012 30.1 5.8 71 121-198 41-112 (206)
10 4dnd_A Syntaxin-10, SYN10; str 38.6 1E+02 0.0035 25.1 7.3 57 128-184 71-128 (130)
11 2v66_B Nuclear distribution pr 37.9 1.4E+02 0.0049 23.7 7.8 49 126-180 37-85 (111)
12 1j1e_C Troponin I, TNI; THIN f 36.4 1.4E+02 0.0046 25.9 8.0 57 127-186 29-86 (180)
13 2yy0_A C-MYC-binding protein; 35.6 36 0.0012 23.5 3.5 24 123-146 18-41 (53)
14 2k48_A Nucleoprotein; viral pr 34.4 70 0.0024 25.3 5.3 55 125-179 36-96 (107)
15 3ghg_A Fibrinogen alpha chain; 33.6 51 0.0017 33.2 5.4 14 159-172 174-187 (562)
16 3twe_A Alpha4H; unknown functi 33.1 59 0.002 18.8 3.4 19 129-147 6-24 (27)
17 2ic6_A Nucleocapsid protein; h 31.2 57 0.002 24.4 4.1 53 125-177 6-64 (78)
18 2l5g_B Putative uncharacterize 30.9 1E+02 0.0035 20.3 4.8 19 126-144 18-36 (42)
19 2dfs_A Myosin-5A; myosin-V, in 29.7 1.2E+02 0.0041 33.2 8.1 15 127-141 987-1001(1080)
20 3qx3_A DNA topoisomerase 2-bet 29.6 1.4E+02 0.0049 31.6 8.3 30 152-181 725-754 (803)
21 3i00_A HIP-I, huntingtin-inter 29.2 2.2E+02 0.0076 22.8 8.1 26 125-150 16-41 (120)
22 4e61_A Protein BIM1; EB1-like 28.9 2.1E+02 0.0073 22.5 7.8 40 125-173 19-58 (106)
23 1g6u_A Domain swapped dimer; d 28.3 1.3E+02 0.0043 19.7 6.9 25 157-181 16-40 (48)
24 2ke4_A CDC42-interacting prote 28.2 33 0.0011 26.7 2.5 26 125-150 23-48 (98)
25 2ic9_A Nucleocapsid protein; h 27.1 1.3E+02 0.0045 23.3 5.7 57 124-180 5-67 (96)
26 2yy0_A C-MYC-binding protein; 27.1 45 0.0015 23.0 2.8 24 126-149 28-51 (53)
27 3he5_B Synzip2; heterodimeric 27.1 1.4E+02 0.0047 19.8 4.9 14 97-110 6-19 (52)
28 3ghg_A Fibrinogen alpha chain; 26.0 1.8E+02 0.0063 29.3 7.9 44 122-174 115-158 (562)
29 3na7_A HP0958; flagellar bioge 25.6 3.5E+02 0.012 23.9 9.5 28 122-149 88-115 (256)
30 3s9g_A Protein hexim1; cyclin 25.4 1E+02 0.0035 24.1 4.8 50 99-150 42-91 (104)
31 2l5g_A GPS2 protein, G protein 25.2 89 0.0031 20.0 3.6 26 160-185 10-35 (38)
32 4fi5_A Nucleoprotein; structur 25.1 86 0.0029 25.0 4.4 55 124-178 22-82 (113)
33 2ky6_A Mediator of RNA polymer 24.8 47 0.0016 28.4 3.0 37 36-72 116-159 (166)
34 4gfh_A DNA topoisomerase 2; to 23.8 1.5E+02 0.005 33.0 7.4 42 27-73 959-1000(1177)
35 3nrf_A APAG protein; structura 23.8 12 0.00043 29.7 -0.7 50 11-68 21-70 (106)
36 3mq7_A Bone marrow stromal ant 22.5 1.3E+02 0.0045 24.2 5.0 16 162-177 79-94 (121)
37 1ytz_I Troponin I; muscle, THI 21.7 3.9E+02 0.013 23.0 8.7 56 127-186 27-83 (182)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.96 E-value=5.2e-32 Score=208.83 Aligned_cols=73 Identities=48% Similarity=0.867 Sum_probs=68.6
Q ss_pred CcccceeEEecCCCCcccccccccchhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHhhhcCCCh
Q 039560 2 GRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFSRYVNLPD 75 (344)
Q Consensus 2 gR~Ki~ik~I~~~~~R~~TfsKR~~GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIeRY~~l~~ 75 (344)
||+||+|++|+|+++|+|||+|||+||+|||+||||||||+|||||||++|++++|++ +++++||+||.+.++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999965 679999999987653
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.96 E-value=7e-32 Score=213.25 Aligned_cols=76 Identities=46% Similarity=0.836 Sum_probs=71.8
Q ss_pred CcccceeEEecCCCCcccccccccchhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHhhhcCCChhhh
Q 039560 2 GRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFSRYVNLPDQER 78 (344)
Q Consensus 2 gR~Ki~ik~I~~~~~R~~TfsKR~~GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIeRY~~l~~~er 78 (344)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++++|++ +++++||+||.++++..+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999999999999999999999965 789999999998876544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.95 E-value=1.3e-30 Score=209.44 Aligned_cols=72 Identities=42% Similarity=0.635 Sum_probs=68.4
Q ss_pred CCcccceeEEecCCCCcccccccccchhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHhhhcCC
Q 039560 1 MGRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFSRYVNL 73 (344)
Q Consensus 1 MgR~Ki~ik~I~~~~~R~~TfsKR~~GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIeRY~~l 73 (344)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++ +++..||+||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhCC
Confidence 89999999999999999999999999999999999999999999999999999999954 6899999999643
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.95 E-value=3.3e-30 Score=204.47 Aligned_cols=70 Identities=36% Similarity=0.637 Sum_probs=67.0
Q ss_pred CCcccceeEEecCCCCcccccccccchhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHhhhc
Q 039560 1 MGRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFSRYV 71 (344)
Q Consensus 1 MgR~Ki~ik~I~~~~~R~~TfsKR~~GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIeRY~ 71 (344)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++ ++++.||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999954 78999998764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.95 E-value=1e-29 Score=205.49 Aligned_cols=70 Identities=36% Similarity=0.637 Sum_probs=66.6
Q ss_pred CCcccceeEEecCCCCcccccccccchhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHhhhc
Q 039560 1 MGRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFSRYV 71 (344)
Q Consensus 1 MgR~Ki~ik~I~~~~~R~~TfsKR~~GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIeRY~ 71 (344)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+|||||||++|++|+|++ +++..||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999954 68999998753
No 6
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.07 E-value=24 Score=28.15 Aligned_cols=60 Identities=22% Similarity=0.169 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhcc--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039560 124 NDIEELQQEVGRLQQQLQMAEDQIRIY--EPDPLRITSIKDIESCEKNLVDTLTQVSQRKEF 183 (344)
Q Consensus 124 ~~iE~Lq~Ei~~Lq~qle~le~~lR~~--~gd~L~~lSleEL~~LE~~Le~~L~~Vr~RK~~ 183 (344)
..+|+|..|+.+|+-++..|..+++.- .+.+-..||..+=+.+-......|...-.+|-+
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe 69 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIE 69 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988741 123466789999888888888888777776633
No 7
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=47.26 E-value=1.2e+02 Score=24.97 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039560 127 EELQQEVGRLQQQL-QMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLS 186 (344)
Q Consensus 127 E~Lq~Ei~~Lq~ql-e~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~L~~Vr~RK~~Ll~ 186 (344)
++|.+|......+- ..+.++. -+-+++++|.++|+.+-+.|.+.+..|.+-|..+-.
T Consensus 29 e~l~kE~e~k~eeKkkiLaER~---~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~ 86 (133)
T 1j1d_C 29 QELEREAEERRGEKGRALSTRA---QPLELAGLGFAELQDLARQLHARVDKVDEERYDIEA 86 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555544443332 2333333 233689999999999999999999999998877643
No 8
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=46.49 E-value=20 Score=22.73 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 039560 126 IEELQQEVGRLQQQLQMAEDQIRIY 150 (344)
Q Consensus 126 iE~Lq~Ei~~Lq~qle~le~~lR~~ 150 (344)
....+++|..|+.|+..|+.++|.+
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3456788888888888888877654
No 9
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=46.23 E-value=35 Score=30.06 Aligned_cols=71 Identities=17% Similarity=0.310 Sum_probs=49.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCCchhh
Q 039560 121 AINNDIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRK-EFLLSNHLSSYDPSSMQ 198 (344)
Q Consensus 121 ~~n~~iE~Lq~Ei~~Lq~qle~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~L~~Vr~RK-~~Ll~~qi~~l~~~~~q 198 (344)
++.++..+|+.-+.+++.++..+...+..+.|+.-+-+|.+-+.+.-- .|..++ +.|+.+++.+++--+.|
T Consensus 41 s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p-------~i~ke~Y~~L~Vd~Vd~ldLVqLQ 112 (206)
T 3oa7_A 41 SFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRP-------DISAEECNFLMVEQIDSANLTTLQ 112 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCT-------TCCHHHHHHHTGGGGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcCc-------ccCHHHHhhcCccccccccHHHHH
Confidence 445667778888888888888888888888899888888887765421 122223 33555777776655555
No 10
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=38.59 E-value=1e+02 Score=25.06 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039560 128 ELQQEVGRLQQQLQMAEDQIRIYEPDPLR-ITSIKDIESCEKNLVDTLTQVSQRKEFL 184 (344)
Q Consensus 128 ~Lq~Ei~~Lq~qle~le~~lR~~~gd~L~-~lSleEL~~LE~~Le~~L~~Vr~RK~~L 184 (344)
+|+..+..++.+|+.+++-++....++-. +++..||..-...+...-.+|..-|.+|
T Consensus 71 EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666555555433323211 4678899999999888888888877664
No 11
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.92 E-value=1.4e+02 Score=23.67 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 039560 126 IEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQR 180 (344)
Q Consensus 126 iE~Lq~Ei~~Lq~qle~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~L~~Vr~R 180 (344)
+-.|+.|+..|+...+.+...+|.+.- .=++|+.-+.....+|..+..+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq------~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQ------ANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHhhHHHHHHH
Confidence 444555555555555555555544321 1234444444444444444444
No 12
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=36.39 E-value=1.4e+02 Score=25.88 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039560 127 EELQQEVGRLQQQL-QMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLS 186 (344)
Q Consensus 127 E~Lq~Ei~~Lq~ql-e~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~L~~Vr~RK~~Ll~ 186 (344)
++|.+|......+- ..+.++. -+-+++++|.++|+.+-+.|.+.+..|.+-|..|-.
T Consensus 29 e~L~~E~e~k~eEKkkiLaER~---kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~ 86 (180)
T 1j1e_C 29 QELEREAEERRGEKGRALSTRA---QPLELAGLGFAELQDLARQLHARVDKVDEERYDIEA 86 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44555544443333 2333333 233788999999999999999999999988866543
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.63 E-value=36 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=14.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhh
Q 039560 123 NNDIEELQQEVGRLQQQLQMAEDQ 146 (344)
Q Consensus 123 n~~iE~Lq~Ei~~Lq~qle~le~~ 146 (344)
..+++.|++|+..|+.+++.+..+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655543
No 14
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.43 E-value=70 Score=25.28 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhh----hccC--CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039560 125 DIEELQQEVGRLQQQLQMAEDQI----RIYE--PDPLRITSIKDIESCEKNLVDTLTQVSQ 179 (344)
Q Consensus 125 ~iE~Lq~Ei~~Lq~qle~le~~l----R~~~--gd~L~~lSleEL~~LE~~Le~~L~~Vr~ 179 (344)
++++|+.|+...+.||-.+..++ +.+. +|+++--++..-+.--..|++.|..++.
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555554433333 2232 3444444444444444445555544443
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.59 E-value=51 Score=33.25 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHH
Q 039560 159 SIKDIESCEKNLVD 172 (344)
Q Consensus 159 SleEL~~LE~~Le~ 172 (344)
.++..+.++++|+.
T Consensus 174 d~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 174 DLKDYEDQQKQLEQ 187 (562)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 34444444444443
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.05 E-value=59 Score=18.83 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 039560 129 LQQEVGRLQQQLQMAEDQI 147 (344)
Q Consensus 129 Lq~Ei~~Lq~qle~le~~l 147 (344)
|-+|+..||..+..+.+.+
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444333333
No 17
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=31.16 E-value=57 Score=24.43 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhh----hccC--CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 039560 125 DIEELQQEVGRLQQQLQMAEDQI----RIYE--PDPLRITSIKDIESCEKNLVDTLTQV 177 (344)
Q Consensus 125 ~iE~Lq~Ei~~Lq~qle~le~~l----R~~~--gd~L~~lSleEL~~LE~~Le~~L~~V 177 (344)
++++|+.|+.....||-.+...+ +.+. +|+++--++..-..--..|+..|..+
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~el 64 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777665444433 3333 33343334444444444444444444
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.85 E-value=1e+02 Score=20.33 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039560 126 IEELQQEVGRLQQQLQMAE 144 (344)
Q Consensus 126 iE~Lq~Ei~~Lq~qle~le 144 (344)
|+.-.+.|..||.++..++
T Consensus 18 I~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 18 ITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.65 E-value=1.2e+02 Score=33.23 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039560 127 EELQQEVGRLQQQLQ 141 (344)
Q Consensus 127 E~Lq~Ei~~Lq~qle 141 (344)
..|+.|+..++.+++
T Consensus 987 ~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 20
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=29.63 E-value=1.4e+02 Score=31.57 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=20.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039560 152 PDPLRITSIKDIESCEKNLVDTLTQVSQRK 181 (344)
Q Consensus 152 gd~L~~lSleEL~~LE~~Le~~L~~Vr~RK 181 (344)
+-++-.||.+++..|.+++.+....+..=+
T Consensus 725 ~M~i~sLT~E~~~kL~~q~~~k~~El~~L~ 754 (803)
T 3qx3_A 725 NMSLWSLTKEKVEELIKQRDAKGREVNDLK 754 (803)
T ss_dssp TSBGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667778888888777777666665443
No 21
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.15 E-value=2.2e+02 Score=22.78 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039560 125 DIEELQQEVGRLQQQLQMAEDQIRIY 150 (344)
Q Consensus 125 ~iE~Lq~Ei~~Lq~qle~le~~lR~~ 150 (344)
.|+.|+.|+..|+.+++.+..+-+.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777666555544
No 22
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.87 E-value=2.1e+02 Score=22.51 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHH
Q 039560 125 DIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDT 173 (344)
Q Consensus 125 ~iE~Lq~Ei~~Lq~qle~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~ 173 (344)
++.+|..++..|+..++.++++.-+| ..-|++.|-.+.+.
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFY---------F~KLRdIEiLcQe~ 58 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFY---------FNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 45678888888888888887765444 44566665555544
No 23
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.28 E-value=1.3e+02 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 039560 157 ITSIKDIESCEKNLVDTLTQVSQRK 181 (344)
Q Consensus 157 ~lSleEL~~LE~~Le~~L~~Vr~RK 181 (344)
++|.+||..||..|...-+.+..-|
T Consensus 16 gfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999888887665544444444
No 24
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.19 E-value=33 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039560 125 DIEELQQEVGRLQQQLQMAEDQIRIY 150 (344)
Q Consensus 125 ~iE~Lq~Ei~~Lq~qle~le~~lR~~ 150 (344)
+|.+|+++|.+-....+.+.+-...|
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~vY 48 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKDVY 48 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665555444
No 25
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=27.14 E-value=1.3e+02 Score=23.32 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhh----hccC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 039560 124 NDIEELQQEVGRLQQQLQMAEDQI----RIYE--PDPLRITSIKDIESCEKNLVDTLTQVSQR 180 (344)
Q Consensus 124 ~~iE~Lq~Ei~~Lq~qle~le~~l----R~~~--gd~L~~lSleEL~~LE~~Le~~L~~Vr~R 180 (344)
.++++|+.|+.....||-.+...+ +.+. +|+++--++..-..--..|+..|..++..
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~ 67 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRE 67 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888877777765544444 2333 33444444444444444555555444433
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.13 E-value=45 Score=22.98 Aligned_cols=24 Identities=4% Similarity=0.202 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 039560 126 IEELQQEVGRLQQQLQMAEDQIRI 149 (344)
Q Consensus 126 iE~Lq~Ei~~Lq~qle~le~~lR~ 149 (344)
.++|+.++..|+.+++.+..++..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445777777777777777776643
No 27
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.10 E-value=1.4e+02 Score=19.79 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhh
Q 039560 97 EYLLRTLQQLRSEN 110 (344)
Q Consensus 97 e~L~~~l~KLk~e~ 110 (344)
.||.+.+.+||++|
T Consensus 6 aylrkkiarlkkdn 19 (52)
T 3he5_B 6 AYLRKKIARLKKDN 19 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 68888899888865
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.02 E-value=1.8e+02 Score=29.27 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=25.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 039560 122 INNDIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTL 174 (344)
Q Consensus 122 ~n~~iE~Lq~Ei~~Lq~qle~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~L 174 (344)
++.+++.|+.+|..--.+|..|+..++.. ..+++.||..++..|
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq---------~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQ---------LVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 34555666666555445566666655443 456666766655443
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.63 E-value=3.5e+02 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=17.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhc
Q 039560 122 INNDIEELQQEVGRLQQQLQMAEDQIRI 149 (344)
Q Consensus 122 ~n~~iE~Lq~Ei~~Lq~qle~le~~lR~ 149 (344)
.+..+..|++|+..++.++..+++.+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777766666665533
No 30
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.44 E-value=1e+02 Score=24.08 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhhhHHHhhcCcccccccHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039560 99 LLRTLQQLRSENDIALQLANPAAINNDIEELQQEVGRLQQQLQMAEDQIRIY 150 (344)
Q Consensus 99 L~~~l~KLk~e~d~~~~~~~~~~~n~~iE~Lq~Ei~~Lq~qle~le~~lR~~ 150 (344)
|-+.+.++..++.---+... .....|.+|..|+.+|..+++.+..+...|
T Consensus 42 LE~~~s~le~e~~rlr~~~~--~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESK--RLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566555542111111 113567888888888888887776655443
No 31
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.18 E-value=89 Score=20.04 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039560 160 IKDIESCEKNLVDTLTQVSQRKEFLL 185 (344)
Q Consensus 160 leEL~~LE~~Le~~L~~Vr~RK~~Ll 185 (344)
++|...=-..|+..|..++.-|.+|+
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444334444444555555555554
No 32
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.09 E-value=86 Score=25.03 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhh----ccC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 039560 124 NDIEELQQEVGRLQQQLQMAEDQIR----IYE--PDPLRITSIKDIESCEKNLVDTLTQVS 178 (344)
Q Consensus 124 ~~iE~Lq~Ei~~Lq~qle~le~~lR----~~~--gd~L~~lSleEL~~LE~~Le~~L~~Vr 178 (344)
-++++|+.|+...+.||-.+...++ .+. +|+++--++..-+.--..|+..|..++
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999888888765554442 333 333433344444444444444444443
No 33
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=24.76 E-value=47 Score=28.38 Aligned_cols=37 Identities=11% Similarity=0.362 Sum_probs=27.4
Q ss_pred hcccCccEEEEeecCCCcccc-c-ccc-----chhhhHHhhhcC
Q 039560 36 SILCDIDIALIMFSPSGRLSH-F-SGR-----KRIEDVFSRYVN 72 (344)
Q Consensus 36 s~LCd~~v~liifsp~gk~~~-~-ss~-----~~ve~VIeRY~~ 72 (344)
+.-|+++|.+++||++-+.|. | |.. ..+.+||+.++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999888765 3 222 367888877763
No 34
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=23.79 E-value=1.5e+02 Score=32.99 Aligned_cols=42 Identities=14% Similarity=0.517 Sum_probs=27.5
Q ss_pred hhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHhhhcCC
Q 039560 27 GLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFSRYVNL 73 (344)
Q Consensus 27 GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIeRY~~l 73 (344)
+|+|+- .|.+-.++- -+++|.+.|++..| .++++||..|..+
T Consensus 959 ~L~k~t-~L~~s~~~~-Nm~~~d~~g~i~k~---~~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 959 GFYERF-KLISPISLM-NMVAFDPHGKIKKY---NSVNEILSEFYYV 1000 (1177)
T ss_dssp CHHHHT-TCEEEECCS-CCEEECTTSCEEEC---SSHHHHHHHHHHH
T ss_pred hHHHhc-cCcceecce-EEEEEcCCCCccCc---CCHHHHHHHHHHH
Confidence 455443 244333331 47889999998888 3589999888643
No 35
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=23.76 E-value=12 Score=29.67 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=37.7
Q ss_pred ecCCCCcccccccccchhhhhhhhhhcccCccEEEEeecCCCccccccccchhhhHHh
Q 039560 11 IENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKRIEDVFS 68 (344)
Q Consensus 11 I~~~~~R~~TfsKR~~GL~KKA~ELs~LCd~~v~liifsp~gk~~~~ss~~~ve~VIe 68 (344)
|.++.....||-=.-..|.+|.-+|+.+| ++.|+|.|+-+.. ..|++.|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l---dTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL---DTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE---EEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe---cccchhhh
Confidence 45556667778778889999999999774 9999999987665 23555444
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.47 E-value=1.3e+02 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039560 162 DIESCEKNLVDTLTQV 177 (344)
Q Consensus 162 EL~~LE~~Le~~L~~V 177 (344)
|+..|...|.+....|
T Consensus 79 EI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 79 EITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 37
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=21.75 E-value=3.9e+02 Score=23.03 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039560 127 EELQQEVGRLQQQLQ-MAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLS 186 (344)
Q Consensus 127 E~Lq~Ei~~Lq~qle-~le~~lR~~~gd~L~~lSleEL~~LE~~Le~~L~~Vr~RK~~Ll~ 186 (344)
++|.+|......+-. .+.++. -+-++++ |.++|+.+-+.|.+.+..|.+-|..|-.
T Consensus 27 e~L~~E~e~k~eeKkkiLaER~---kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~ 83 (182)
T 1ytz_I 27 TEIEKEAAAKEVEKQNYLAEHS---PPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEV 83 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---CCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455555444443332 333332 2346888 9999999999999999999998866544
Done!