Query 039561
Match_columns 190
No_of_seqs 136 out of 1135
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.3E-22 5E-27 175.9 10.0 182 2-185 406-611 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.5E-22 7.6E-27 174.7 9.7 147 2-149 142-295 (968)
3 KOG4194 Membrane glycoprotein 99.7 1.2E-18 2.6E-23 139.4 2.9 101 85-185 264-408 (873)
4 KOG4194 Membrane glycoprotein 99.7 1.7E-16 3.7E-21 127.2 7.0 145 3-149 81-232 (873)
5 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.3E-23 119.8 -4.6 140 3-165 36-191 (264)
6 KOG0444 Cytoskeletal regulator 99.6 2.6E-17 5.7E-22 133.1 1.0 182 2-187 80-311 (1255)
7 KOG0472 Leucine-rich repeat pr 99.6 2.6E-18 5.7E-23 132.1 -4.5 175 4-186 95-292 (565)
8 KOG0444 Cytoskeletal regulator 99.6 2.7E-17 5.8E-22 133.1 -0.7 160 2-184 57-260 (1255)
9 KOG0617 Ras suppressor protein 99.6 8.3E-18 1.8E-22 116.1 -3.5 127 1-149 57-184 (264)
10 KOG0532 Leucine-rich repeat (L 99.6 2.4E-17 5.2E-22 131.4 -6.5 159 6-189 81-254 (722)
11 KOG0472 Leucine-rich repeat pr 99.6 6.8E-17 1.5E-21 124.4 -3.9 172 2-181 116-309 (565)
12 PLN03150 hypothetical protein; 99.5 6.1E-14 1.3E-18 117.5 7.7 114 50-189 420-537 (623)
13 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.9E-18 116.6 9.5 128 48-184 302-460 (788)
14 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.5E-18 117.1 8.9 166 3-185 202-383 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 117.1 7.5 167 2-185 222-404 (754)
16 PLN03210 Resistant to P. syrin 99.4 6.6E-13 1.4E-17 118.2 9.7 95 90-186 778-887 (1153)
17 cd00116 LRR_RI Leucine-rich re 99.4 7.6E-14 1.6E-18 108.0 1.2 61 89-149 164-232 (319)
18 PLN03150 hypothetical protein; 99.4 8.9E-13 1.9E-17 110.6 7.6 107 25-149 419-526 (623)
19 KOG4237 Extracellular matrix p 99.4 5.4E-14 1.2E-18 108.2 0.2 179 3-182 70-360 (498)
20 KOG0618 Serine/threonine phosp 99.3 6.5E-14 1.4E-18 117.3 -2.2 174 2-179 243-486 (1081)
21 PRK15387 E3 ubiquitin-protein 99.3 5.7E-12 1.2E-16 106.8 9.2 112 3-127 204-315 (788)
22 cd00116 LRR_RI Leucine-rich re 99.3 2.2E-13 4.9E-18 105.3 0.5 180 2-182 25-263 (319)
23 PLN03210 Resistant to P. syrin 99.3 1.9E-11 4.2E-16 109.0 11.3 148 3-174 592-752 (1153)
24 KOG0618 Serine/threonine phosp 99.2 9.4E-13 2E-17 110.5 -0.3 127 1-149 360-487 (1081)
25 PF14580 LRR_9: Leucine-rich r 99.2 2.5E-11 5.5E-16 85.7 6.2 119 2-144 21-146 (175)
26 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.3E-16 99.0 4.2 157 2-182 118-290 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 1.1E-12 2.4E-17 105.2 -4.5 161 2-179 100-270 (722)
28 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.8E-16 92.6 -0.5 123 2-149 286-410 (490)
29 KOG4237 Extracellular matrix p 99.1 2E-11 4.3E-16 94.3 0.3 136 9-149 55-199 (498)
30 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.2E-15 66.1 4.2 60 90-149 1-60 (61)
31 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 6E-15 90.9 3.9 142 2-149 142-288 (394)
32 PF13855 LRR_8: Leucine rich r 99.0 7.3E-10 1.6E-14 64.8 3.6 60 1-60 2-61 (61)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.7E-14 76.5 3.6 109 20-159 15-126 (175)
34 KOG1259 Nischarin, modulator o 98.8 8.5E-10 1.8E-14 83.1 -0.3 103 23-149 283-385 (490)
35 KOG3207 Beta-tubulin folding c 98.6 4.3E-09 9.2E-14 82.5 -0.6 40 22-61 170-210 (505)
36 KOG0531 Protein phosphatase 1, 98.6 9.6E-09 2.1E-13 82.7 0.9 155 3-183 75-246 (414)
37 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.5E-14 90.6 -5.1 129 25-185 165-295 (1096)
38 KOG3207 Beta-tubulin folding c 98.4 2.7E-08 5.9E-13 78.1 -1.3 39 22-61 119-159 (505)
39 KOG4658 Apoptotic ATPase [Sign 98.3 3.5E-07 7.5E-12 79.5 3.6 101 25-144 546-648 (889)
40 KOG1909 Ran GTPase-activating 98.3 7.8E-08 1.7E-12 73.5 -1.5 39 22-60 155-197 (382)
41 KOG4658 Apoptotic ATPase [Sign 98.2 5.9E-07 1.3E-11 78.1 2.8 104 2-124 547-652 (889)
42 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.3E-11 47.7 2.7 36 91-127 2-37 (44)
43 KOG1859 Leucine-rich repeat pr 98.1 1.9E-07 4.1E-12 77.9 -2.1 136 41-181 102-266 (1096)
44 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6.2E-11 46.0 3.2 36 25-61 2-37 (44)
45 KOG1909 Ran GTPase-activating 98.1 8.4E-07 1.8E-11 68.0 1.5 61 2-62 94-171 (382)
46 KOG0531 Protein phosphatase 1, 98.1 2.2E-07 4.9E-12 74.8 -2.1 103 1-127 96-199 (414)
47 KOG1644 U2-associated snRNP A' 98.1 1.2E-05 2.6E-10 57.5 6.8 103 24-148 42-150 (233)
48 COG5238 RNA1 Ran GTPase-activa 98.1 2.1E-06 4.5E-11 64.2 2.6 142 2-159 32-227 (388)
49 KOG4579 Leucine-rich repeat (L 97.9 5.1E-07 1.1E-11 60.7 -2.8 107 4-133 31-141 (177)
50 KOG4579 Leucine-rich repeat (L 97.9 2.7E-07 5.8E-12 62.1 -4.5 104 25-149 28-134 (177)
51 KOG3665 ZYG-1-like serine/thre 97.9 6.2E-06 1.4E-10 70.2 1.8 128 2-149 124-261 (699)
52 PRK15386 type III secretion pr 97.6 0.00023 4.9E-09 56.9 7.1 32 114-148 156-187 (426)
53 KOG2120 SCF ubiquitin ligase, 97.6 3.7E-06 8E-11 63.6 -2.9 144 2-148 212-373 (419)
54 PRK15386 type III secretion pr 97.5 0.00054 1.2E-08 54.8 7.4 14 24-37 52-65 (426)
55 KOG3665 ZYG-1-like serine/thre 97.3 7.7E-05 1.7E-09 63.7 0.8 60 88-149 171-231 (699)
56 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 47.3 4.5 101 3-123 45-149 (233)
57 KOG2982 Uncharacterized conser 97.0 0.00084 1.8E-08 51.2 3.3 64 3-66 74-139 (418)
58 KOG2739 Leucine-rich acidic nu 96.9 0.00062 1.3E-08 50.6 2.4 102 20-144 39-149 (260)
59 COG5238 RNA1 Ran GTPase-activa 96.6 0.0029 6.2E-08 47.8 4.0 128 19-149 87-253 (388)
60 PF00560 LRR_1: Leucine Rich R 96.4 0.0027 6E-08 28.7 1.8 19 92-111 2-20 (22)
61 KOG2120 SCF ubiquitin ligase, 96.3 0.00011 2.4E-09 55.9 -4.9 148 2-149 187-349 (419)
62 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.2E-08 29.2 1.0 21 115-136 1-21 (22)
63 KOG2982 Uncharacterized conser 96.3 0.00095 2.1E-08 50.9 -0.3 97 47-159 70-169 (418)
64 KOG2739 Leucine-rich acidic nu 96.0 0.005 1.1E-07 45.9 2.5 100 3-121 46-150 (260)
65 PF13306 LRR_5: Leucine rich r 95.6 0.032 7E-07 37.0 5.0 106 19-147 7-112 (129)
66 PF13306 LRR_5: Leucine rich r 94.8 0.1 2.3E-06 34.5 5.6 38 19-57 30-67 (129)
67 PF13504 LRR_7: Leucine rich r 94.6 0.026 5.6E-07 23.7 1.4 13 25-37 2-14 (17)
68 KOG2123 Uncharacterized conser 94.0 0.0014 3.1E-08 49.5 -5.3 37 22-60 39-75 (388)
69 KOG2123 Uncharacterized conser 92.5 0.012 2.5E-07 44.8 -2.5 65 2-69 43-109 (388)
70 smart00369 LRR_TYP Leucine-ric 91.9 0.15 3.2E-06 23.7 1.8 14 24-37 2-15 (26)
71 smart00370 LRR Leucine-rich re 91.9 0.15 3.2E-06 23.7 1.8 14 24-37 2-15 (26)
72 PF13516 LRR_6: Leucine Rich r 90.4 0.1 2.2E-06 23.8 0.4 15 48-62 2-16 (24)
73 KOG0473 Leucine-rich repeat pr 89.3 0.0098 2.1E-07 44.0 -5.4 87 20-127 38-124 (326)
74 KOG0473 Leucine-rich repeat pr 84.8 0.022 4.7E-07 42.3 -5.7 85 44-149 38-122 (326)
75 KOG3864 Uncharacterized conser 83.4 0.15 3.3E-06 36.9 -1.8 14 49-62 102-115 (221)
76 smart00364 LRR_BAC Leucine-ric 83.4 0.75 1.6E-05 21.6 1.1 17 115-132 3-19 (26)
77 KOG4308 LRR-containing protein 82.5 0.015 3.3E-07 47.8 -8.1 60 2-61 117-185 (478)
78 smart00368 LRR_RI Leucine rich 81.6 1.1 2.3E-05 21.3 1.3 15 48-62 2-16 (28)
79 KOG3864 Uncharacterized conser 81.1 0.21 4.6E-06 36.2 -1.8 68 3-70 104-174 (221)
80 smart00365 LRR_SD22 Leucine-ri 80.9 1.5 3.2E-05 20.6 1.6 14 24-37 2-15 (26)
81 KOG1947 Leucine rich repeat pr 80.7 0.5 1.1E-05 38.5 -0.0 35 23-57 187-223 (482)
82 KOG1947 Leucine rich repeat pr 61.4 2.7 5.9E-05 34.2 0.0 40 20-59 210-254 (482)
83 smart00367 LRR_CC Leucine-rich 40.8 24 0.00052 16.0 1.5 12 138-149 2-13 (26)
84 KOG3763 mRNA export factor TAP 40.6 18 0.00039 30.6 1.6 35 113-148 217-254 (585)
85 KOG4242 Predicted myosin-I-bin 34.8 99 0.0021 26.0 4.9 20 49-68 215-234 (553)
86 KOG4341 F-box protein containi 32.4 24 0.00051 29.0 1.1 37 23-59 293-331 (483)
87 TIGR00864 PCC polycystin catio 27.9 33 0.00071 34.8 1.4 30 97-126 2-31 (2740)
88 KOG3763 mRNA export factor TAP 27.3 38 0.00082 28.7 1.5 36 22-58 216-254 (585)
89 TIGR00864 PCC polycystin catio 26.2 46 0.00099 34.0 2.0 32 6-37 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=2.3e-22 Score=175.85 Aligned_cols=182 Identities=28% Similarity=0.403 Sum_probs=132.1
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHH-----
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF----- 76 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~----- 76 (190)
|++|++++|.+++.+|..+..++.|+++++++|.+++..|..+..+++|+.|++++|.+.+..|..+. ...|.
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls 483 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLS 483 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECc
Confidence 44555555555555555555555555555555555555555455555666666666665555554331 22331
Q ss_pred --hhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----
Q 039561 77 --MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----- 149 (190)
Q Consensus 77 --~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----- 149 (190)
.+.+..|..+..++.|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 2234556667778889999999999988889888889999999999999998899999999999999999997
Q ss_pred -----------eEEeecccccccCCccccccccccccccCC-cccCCC
Q 039561 150 -----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAP 185 (190)
Q Consensus 150 -----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n-~l~~~~ 185 (190)
++++++|++.|.+|+...+..+....+.+| .+|+.+
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 789999999999998878888888889999 799754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=3.5e-22 Score=174.70 Aligned_cols=147 Identities=33% Similarity=0.393 Sum_probs=73.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+.. +++|..+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~ 220 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLG 220 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECc
Confidence 344455555554445555555555555555555555455555555555555555555555545544432 3333221
Q ss_pred ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.+..|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|.
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 22334444445555555555555554455555555555555555555554444444444555555554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-18 Score=139.36 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=69.0
Q ss_pred ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------
Q 039561 85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------- 149 (190)
Q Consensus 85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------- 149 (190)
.|..+..+++|+|..|++...--+|+-++++|+.|++++|.|....++.+..+++|+.|++++|+
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 34445666666666666654445556666666666666666665566666666666666666665
Q ss_pred -------------------------eEEeecccccccCCccc----cccccccccccCCcccCCC
Q 039561 150 -------------------------YLNLSNNNLTGEIPSGI----QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 -------------------------~l~l~~N~l~g~~p~~~----~~~~l~~~~~~~n~l~~~~ 185 (190)
.|||+.|.+++.|.+.. ++..|+.+.+.||++...|
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 68999999998887753 6788888888888777554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=1.7e-16 Score=127.20 Aligned_cols=145 Identities=23% Similarity=0.190 Sum_probs=106.6
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--cC
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--KG 80 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~~ 80 (190)
++|++++|.+...-+..|.++++|+.+++.+|.++ .+|..-....+++.|++.+|.+...-.+.+.. ++.|..+ +-
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~-l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA-LPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh-Hhhhhhhhhhh
Confidence 45999999999877778899999999999999999 88976666677999999999987655555543 5555332 11
Q ss_pred C----c-ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 81 K----A-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 81 ~----~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
+ + -..+..-.++++|+|++|.|+....+.|..+..|.+|.|++|+++...+..|+.+++|+.|++..|+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 1 1 1234444568888888888876666677777778888888888874444566667777777777776
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.5e-18 Score=119.77 Aligned_cols=140 Identities=22% Similarity=0.400 Sum_probs=95.6
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.|-+++|.++. +|+.++.+.+|++|++.+|+++ ++|.+++.++.|+.|.++-|.+. ..|..+
T Consensus 36 TrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-------------- 98 (264)
T KOG0617|consen 36 TRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-------------- 98 (264)
T ss_pred hhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--------------
Confidence 445677777765 5667777777777777777777 67777777777777777777643 345444
Q ss_pred ccccCCCCCCcEEEccCCeec-ccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 83 FEYSTNLNVLRVIELSKNNFL-GEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
+.++.|++|++.+|++. ..+|..|-.++.|+.|+++.|.+. .+|..++++++|+.|.+..|.
T Consensus 99 ----gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt 173 (264)
T KOG0617|consen 99 ----GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT 173 (264)
T ss_pred ----CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHH
Confidence 34777777777777765 346777777777777777777776 777777777777776655554
Q ss_pred ---eEEeecccccccCCcc
Q 039561 150 ---YLNLSNNNLTGEIPSG 165 (190)
Q Consensus 150 ---~l~l~~N~l~g~~p~~ 165 (190)
++.+.+|.++ .+|..
T Consensus 174 ~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 174 RLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred HHHHHhcccceee-ecChh
Confidence 4556666666 44443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=2.6e-17 Score=133.12 Aligned_cols=182 Identities=24% Similarity=0.374 Sum_probs=113.8
Q ss_pred CcceeccCCccccC-CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561 2 LQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~- 79 (190)
|+.+++..|++... +|+.+..+..|+.+++|.|+++ ++|..+-..+++-.|++++|++ ..+|..++.++.-|..+.
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcc
Confidence 34445555554411 5555566666666666666665 5555555555555566666553 245544443344432221
Q ss_pred -C----Ccccc------------------------cCCCCCCcEEEccCCee-cccCCccCCCCCCCcEEEcccCcceec
Q 039561 80 -G----KAFEY------------------------STNLNVLRVIELSKNNF-LGEIAKGVTNPGASQTLNLSQNSFSRT 129 (190)
Q Consensus 80 -~----~~~~~------------------------~~~~~~L~~L~l~~n~l-~~~~p~~~~~l~~L~~L~l~~n~l~~~ 129 (190)
. ..|.. +..+.+|++|.+++.+- ..-+|..+-.+.+|..+|++.|.+. .
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 1 11222 22344455555554332 1246777777788888888888887 7
Q ss_pred cCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCccc-cccccccccccCC--cccCCCCC
Q 039561 130 IPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS--ELCGAPFP 187 (190)
Q Consensus 130 ~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n--~l~~~~~~ 187 (190)
.|+.+-.+++|+.|+++.|+ .|++|.|+++ .+|+++ .+..++.+...+| .+.|.|.|
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 88888888888888888887 6889999998 788887 6888888888888 55577754
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=2.6e-18 Score=132.05 Aligned_cols=175 Identities=21% Similarity=0.321 Sum_probs=119.2
Q ss_pred ceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c--
Q 039561 4 QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K-- 79 (190)
Q Consensus 4 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~-- 79 (190)
.++.+.|.++. +|+.+..+.+++.+++++|.+. .+|+.++.+..++.++..+|++. ..|+.+.. +.++..+ .
T Consensus 95 ~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n 170 (565)
T KOG0472|consen 95 SLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGN 170 (565)
T ss_pred HhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhcccc
Confidence 44555555554 5666666666666666666666 66666666667777777777744 45555543 4444332 1
Q ss_pred --CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------
Q 039561 80 --GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------- 149 (190)
Q Consensus 80 --~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------- 149 (190)
...|+..-.|+.|++++...|-++ .+|+.++.+.+|..|++.+|++. ++| +|..+..|.++.++.|+
T Consensus 171 ~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 171 KLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred chhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence 122333334777888888777776 77777888888888888888887 667 67777777777777776
Q ss_pred --------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 150 --------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 --------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
.+|+.+|++. ++|+.+ -+++++++++++|.+++.|.
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence 6888888887 778877 56678888888888887774
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=2.7e-17 Score=133.08 Aligned_cols=160 Identities=24% Similarity=0.374 Sum_probs=107.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCccc-CcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLS-GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
|+.|++++|++.. +-..++.++.|+.+.++.|++. ..+|..+..+..|..||+++|++ .++|..+-.
T Consensus 57 LEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~---------- 124 (1255)
T KOG0444|consen 57 LEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEY---------- 124 (1255)
T ss_pred hhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhh----------
Confidence 5678888888876 4446788899999999999875 35787888999999999999995 478876654
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCcc-CCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKG-VTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------- 149 (190)
.+++.+|+|++|+|. .+|.. +-+++.|-.||+++|++. .+|+.+..+..|++|++++|.
T Consensus 125 --------AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 125 --------AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred --------hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc
Confidence 445555555555555 34432 234555555555555554 455555555555555555554
Q ss_pred -------------------------------eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561 150 -------------------------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA 184 (190)
Q Consensus 150 -------------------------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~ 184 (190)
.+|+|.|.+. .+|+++ .+.++..+++++|.++..
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee
Confidence 5777777776 667766 666777777777655543
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=8.3e-18 Score=116.14 Aligned_cols=127 Identities=25% Similarity=0.371 Sum_probs=95.3
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCC-CcHHHHHHHHHHHhhc
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRD-VPKWIKKSLLALFMMK 79 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~~~~~l~~~~ 79 (190)
.|++|++.+|++.. +|..++.+++|+.|++..|++. ..|..|+.++-|+.||+++|++... +|..++.
T Consensus 57 nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~--------- 125 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY--------- 125 (264)
T ss_pred hhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH---------
Confidence 36889999999997 8999999999999999999998 8999999999999999999998753 5666664
Q ss_pred CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
+..|+.|+++.|-+. .+|+.++.+++|+.|.+..|.+- .+|..++.+..|++|.+++|+
T Consensus 126 ---------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 126 ---------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ---------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 444555556666555 55555666666666666666555 556666666666666666665
No 10
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.57 E-value=2.4e-17 Score=131.44 Aligned_cols=159 Identities=25% Similarity=0.430 Sum_probs=116.6
Q ss_pred eccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccc
Q 039561 6 LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEY 85 (190)
Q Consensus 6 ~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~ 85 (190)
+++.|++.. +|..+..+..|..+.+..|.+. .+|..+..+..|.++|++.|+++ ..|..++.
T Consensus 81 DlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~--------------- 142 (722)
T KOG0532|consen 81 DLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD--------------- 142 (722)
T ss_pred hcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc---------------
Confidence 344444443 4444444444444444444444 44444444555555555555532 34444443
Q ss_pred cCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------------eE
Q 039561 86 STNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------YL 151 (190)
Q Consensus 86 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------~l 151 (190)
++ |++|.+++|++. .+|+.++.+..|.+||.+.|.+. .+|..++.+.+|+.+.+..|+ .|
T Consensus 143 ---lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~l 216 (722)
T KOG0532|consen 143 ---LP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRL 216 (722)
T ss_pred ---Cc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeee
Confidence 66 889999999987 88998998899999999999998 889999999999999999998 79
Q ss_pred EeecccccccCCccc-cccccccccccCCcccCCCCCCC
Q 039561 152 NLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPFPKC 189 (190)
Q Consensus 152 ~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~~~c 189 (190)
|+|+|+++ .+|.++ .++.|.++-+.+|.|...|++.|
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 99999999 899999 89999999999999999987655
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=6.8e-17 Score=124.39 Aligned_cols=172 Identities=22% Similarity=0.286 Sum_probs=144.3
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
|+.++.++|.+.. +|+.++.+..+..++..+|+++ ..|..+..+.++..+++.+|.+. ..|+.... |++|..+
T Consensus 116 l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 116 LVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred hhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc
Confidence 5678899999987 7888999999999999999999 78888888899999999999965 45555544 8888555
Q ss_pred ---cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcccc-CCCCCCEEeCCCCc-----
Q 039561 79 ---KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG-SMKSLESIDFSANH----- 149 (190)
Q Consensus 79 ---~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~N~----- 149 (190)
-+.+|+.++.+.+|..|++..|++. .+| .|+++..|..++++.|.|. .+|.+.. ++.++..+|+..|+
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc
Confidence 3567889999999999999999997 777 6899999999999999997 7787654 88899999999998
Q ss_pred ----------eEEeecccccccCCccccccccccccccCCcc
Q 039561 150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSEL 181 (190)
Q Consensus 150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l 181 (190)
++|+|+|.++ ..|.+.+--+++.+.+.||.+
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCch
Confidence 8999999999 677777433899998888854
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=6.1e-14 Score=117.51 Aligned_cols=114 Identities=35% Similarity=0.554 Sum_probs=99.9
Q ss_pred ccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceec
Q 039561 50 FEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT 129 (190)
Q Consensus 50 L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 129 (190)
++.|++++|.+.+.+|..+.. +++|+.|+|++|.+.|.+|..++.++.|+.|++++|.++|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~------------------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~ 481 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK------------------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481 (623)
T ss_pred EEEEECCCCCccccCCHHHhC------------------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC
Confidence 678899999988888887766 99999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCEEeCCCCceEEeecccccccCCcccc--ccccccccccCC-cccCCCC-CCC
Q 039561 130 IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQ--LQGFHQSRFAGS-ELCGAPF-PKC 189 (190)
Q Consensus 130 ~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~~~--~~~l~~~~~~~n-~l~~~~~-~~c 189 (190)
+|+.++.+++|+. |++++|.++|.+|+.+. ..++..+.+.+| .+|+.|. ..|
T Consensus 482 iP~~l~~L~~L~~--------L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 482 IPESLGQLTSLRI--------LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CchHHhcCCCCCE--------EECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 9999999999995 55888999999999873 345667889999 8999874 466
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.3e-13 Score=116.55 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=72.5
Q ss_pred CCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCC-CCCcEEEccCCeecccCCccCCC--------------
Q 039561 48 THFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNL-NVLRVIELSKNNFLGEIAKGVTN-------------- 112 (190)
Q Consensus 48 ~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-------------- 112 (190)
++|+.|++++|.+.+ +|..+. .+..|.... +....+..+ ..|+.|++++|++. .+|.....
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~-~L~~L~Ls~-N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPS-ELCKLWAYN-NQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL 377 (788)
T ss_pred cccceeECCCCcccc-CCCCcc-ccccccccc-CccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccC
Confidence 456777777776553 333211 122221111 111112122 35777888877776 34432211
Q ss_pred ---CCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------eEEeecccccccCCccc-cccccccccc
Q 039561 113 ---PGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------YLNLSNNNLTGEIPSGI-QLQGFHQSRF 176 (190)
Q Consensus 113 ---l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~ 176 (190)
...|+.|++++|.++ .+|.. .++|+.|++++|. +|++++|+|+ .+|..+ .+..+..+++
T Consensus 378 P~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 378 PALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 124566666666665 34432 2456777777776 5777888887 778776 6788888888
Q ss_pred cCCcccCC
Q 039561 177 AGSELCGA 184 (190)
Q Consensus 177 ~~n~l~~~ 184 (190)
++|.+++.
T Consensus 453 s~N~Ls~~ 460 (788)
T PRK15387 453 EGNPLSER 460 (788)
T ss_pred CCCCCCch
Confidence 88877754
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=1.1e-13 Score=117.14 Aligned_cols=166 Identities=19% Similarity=0.340 Sum_probs=76.3
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC--
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG-- 80 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~-- 80 (190)
+.|++++|+++. +|..+. ++|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|..+...++.|..-..
T Consensus 202 ~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L 274 (754)
T PRK15370 202 TTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKI 274 (754)
T ss_pred cEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcCCcc
Confidence 445555555553 343332 34555555555555 3443332 24555555555543 344433211111100000
Q ss_pred -CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------
Q 039561 81 -KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 81 -~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------- 149 (190)
.+|..+. ++|+.|++++|++. .+|..+. ..|+.|++++|.++ .+|..+ .++|+.|++++|.
T Consensus 275 ~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~ 346 (754)
T PRK15370 275 SCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASLPP 346 (754)
T ss_pred CccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhhcC
Confidence 0111111 23444444444443 2332221 23444444444444 233222 2456666666664
Q ss_pred ---eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
.|++++|+|+ .+|..+ ...++.+++++|.+...|
T Consensus 347 sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALTNLP 383 (754)
T ss_pred cccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCCCCC
Confidence 6777777776 566554 356777778887776665
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.2e-13 Score=117.06 Aligned_cols=167 Identities=18% Similarity=0.329 Sum_probs=116.3
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.++. +|..+. .+|+.|++++|.++ .+|..+. ..|+.|++++|.+. .+|..+..+++.|..-...
T Consensus 222 L~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~ 294 (754)
T PRK15370 222 IKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNS 294 (754)
T ss_pred CCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCc
Confidence 6778888888875 665443 36777777777777 5665543 46777777777755 3555443223322111111
Q ss_pred ---cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561 82 ---AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------- 149 (190)
Q Consensus 82 ---~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------- 149 (190)
+|..+ .+.|+.|++++|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|+
T Consensus 295 Lt~LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp 366 (754)
T PRK15370 295 IRTLPAHL--PSGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLP 366 (754)
T ss_pred cccCcccc--hhhHHHHHhcCCccc-cCCcccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhc
Confidence 12111 236888999999998 5676443 68999999999998 5776553 689999999997
Q ss_pred ----eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 ----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.|+ .+|..+. ..++.+.+.+|.+...|
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~-~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP-AALQIMQASRNNLVRLP 404 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH-HHHHHHhhccCCcccCc
Confidence 7999999999 7887652 46888999999888776
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=6.6e-13 Score=118.24 Aligned_cols=95 Identities=26% Similarity=0.326 Sum_probs=77.0
Q ss_pred CCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------eEEeecc
Q 039561 90 NVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------YLNLSNN 156 (190)
Q Consensus 90 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------------~l~l~~N 156 (190)
++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|. +|++++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 567888888887666788889999999999999875444777766 67889999999874 7899999
Q ss_pred cccccCCccc-cccccccccccCC-cccCCCC
Q 039561 157 NLTGEIPSGI-QLQGFHQSRFAGS-ELCGAPF 186 (190)
Q Consensus 157 ~l~g~~p~~~-~~~~l~~~~~~~n-~l~~~~~ 186 (190)
.+. .+|..+ .+.+++.+.+.++ .+...|.
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 998 788877 7888999998886 7776654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=7.6e-14 Score=107.97 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=28.0
Q ss_pred CCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc
Q 039561 89 LNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 89 ~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~ 149 (190)
++.++.|++++|.+.+. ++..+...+.|+.|++++|.+++. +...+..+++|+.|++++|.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 44555555555555421 122233334555555555555422 12233444555555555543
No 18
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=8.9e-13 Score=110.56 Aligned_cols=107 Identities=27% Similarity=0.461 Sum_probs=89.2
Q ss_pred CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561 25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG 104 (190)
Q Consensus 25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 104 (190)
.++.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+.. ++.|+.|++++|++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~------------------l~~L~~LdLs~N~lsg 480 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------ITSLEVLDLSYNSFNG 480 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC------------------CCCCCEEECCCCCCCC
Confidence 3778899999999889988889999999999999988888887766 8899999999999998
Q ss_pred cCCccCCCCCCCcEEEcccCcceeccCccccCC-CCCCEEeCCCCc
Q 039561 105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSM-KSLESIDFSANH 149 (190)
Q Consensus 105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~l~l~~N~ 149 (190)
.+|+.++.+++|+.|++++|.++|.+|..++.. .++..+++.+|.
T Consensus 481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 899999999999999999999999999887653 244555544443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=5.4e-14 Score=108.22 Aligned_cols=179 Identities=21% Similarity=0.205 Sum_probs=116.6
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccC-CcccCCCcHHHHHHHHHHHhhc--
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRE-NAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
+.+.+..|+|+...+.+|+.+++|+.++++.|.|+..-|..|..++++..|.+.+ |.+ ..+|...+..+.++..+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHHhcC
Confidence 4578899999986667899999999999999999977788999999888777666 664 456765555555541110
Q ss_pred ------------------------C----Cccc-ccCCCCCCcEEEccCCe-----------------------------
Q 039561 80 ------------------------G----KAFE-YSTNLNVLRVIELSKNN----------------------------- 101 (190)
Q Consensus 80 ------------------------~----~~~~-~~~~~~~L~~L~l~~n~----------------------------- 101 (190)
. .++. .+..+..++.+.+..|.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 0 0000 11111112211111111
Q ss_pred --------------------------------ecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 102 --------------------------------FLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 102 --------------------------------l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
..+..| .-|+.++.|+.|++++|.+++.-+.+|.....+++|.+..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 001112 12456677777777777777666677777777777777777
Q ss_pred c----------------eEEeecccccccCCccc-cccccccccccCC-ccc
Q 039561 149 H----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS-ELC 182 (190)
Q Consensus 149 ~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n-~l~ 182 (190)
+ .|+|.+|+|+-..|-.+ ....+..+++..| ..|
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 6 68899999986666666 5777888888888 444
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=6.5e-14 Score=117.31 Aligned_cols=174 Identities=26% Similarity=0.380 Sum_probs=103.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccC----------------------cCCccccCCCCccEEeccCCc
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSG----------------------AIPLSLQNGTHFEVLDLRENA 59 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~----------------------~~~~~~~~l~~L~~L~l~~n~ 59 (190)
|++++++.|+++. +|++++.+.+|+.++...|.++. .+|.....+++|++|++..|+
T Consensus 243 l~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 243 LQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred ceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 4567777777776 66777777777777777776641 345455557888999999998
Q ss_pred ccCCCcHHHHHHHHH-HHhh-------------------------------cCCcccccCCCCCCcEEEccCCeecccCC
Q 039561 60 FIRDVPKWIKKSLLA-LFMM-------------------------------KGKAFEYSTNLNVLRVIELSKNNFLGEIA 107 (190)
Q Consensus 60 ~~~~~p~~~~~~~~~-l~~~-------------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 107 (190)
+. ..|+.+..-... +..+ .....+.+-.+.+|++|+|++|++. .+|
T Consensus 322 L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fp 399 (1081)
T KOG0618|consen 322 LP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFP 399 (1081)
T ss_pred cc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCC
Confidence 54 566533221111 1111 1111122334556666666666655 444
Q ss_pred c-cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------------eEEeeccccc-ccCCcccccccc
Q 039561 108 K-GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------YLNLSNNNLT-GEIPSGIQLQGF 171 (190)
Q Consensus 108 ~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------~l~l~~N~l~-g~~p~~~~~~~l 171 (190)
+ .+.++..|++|+|++|+++ .+|..+..++.|++|....|+ .+|++.|+++ +.+|....-.+|
T Consensus 400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 3 3445555666666666665 555555555566655555554 6888888886 233444444778
Q ss_pred ccccccCC
Q 039561 172 HQSRFAGS 179 (190)
Q Consensus 172 ~~~~~~~n 179 (190)
+++++.||
T Consensus 479 kyLdlSGN 486 (1081)
T KOG0618|consen 479 KYLDLSGN 486 (1081)
T ss_pred ceeeccCC
Confidence 88888887
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=5.7e-12 Score=106.81 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=63.6
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
..|+++++.++. +|+.+. ++|+.|+++.|+++ .+|.. .++|++|++++|++. .+|..+. ++..|......+
T Consensus 204 ~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~lp~-sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVLPP-GLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCccc-ccceeeccCCch
Confidence 357788888874 776665 47888888888888 56642 467888888888765 3454322 233221111111
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 127 (190)
...-.....|+.|++++|++. .+|.. .++|+.|++++|.++
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred hhhhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc
Confidence 100001234556666666665 44442 345666677666666
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.2e-13 Score=105.34 Aligned_cols=180 Identities=23% Similarity=0.284 Sum_probs=105.2
Q ss_pred CcceeccCCccccC----CCcccCCCCCCcEEEcccCcccC------cCCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561 2 LQQGLKIQHKFSRS----FPTSTGALSSLESLHLHRNHLSG------AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71 (190)
Q Consensus 2 L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~n~~~~------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 71 (190)
|++++++++.++.. +++.+...+.++.++++++.+.+ .++..+..+++|+.|++++|.+....+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~- 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES- 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH-
Confidence 45566666665322 33344455556666666655441 11223344556666666666654433333322
Q ss_pred HHH---HHhhc--CC---------cccccCCC-CCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec---
Q 039561 72 LLA---LFMMK--GK---------AFEYSTNL-NVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT--- 129 (190)
Q Consensus 72 ~~~---l~~~~--~~---------~~~~~~~~-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~--- 129 (190)
+.. |..+. .. +...+..+ +++++|++++|.+++. ++..+..+..|+.|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 222 22110 00 01122335 7899999999998732 344566678899999999988742
Q ss_pred -cCccccCCCCCCEEeCCCCc--------------------eEEeecccccccCCccc--c----ccccccccccCCccc
Q 039561 130 -IPESIGSMKSLESIDFSANH--------------------YLNLSNNNLTGEIPSGI--Q----LQGFHQSRFAGSELC 182 (190)
Q Consensus 130 -~p~~l~~l~~L~~l~l~~N~--------------------~l~l~~N~l~g~~p~~~--~----~~~l~~~~~~~n~l~ 182 (190)
++..+...++|+.+++++|. +|++++|.+++..+..+ . ...++.+++++|.+.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 33345566789999999886 78999998875322222 1 267888888888654
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.30 E-value=1.9e-11 Score=108.98 Aligned_cols=148 Identities=19% Similarity=0.309 Sum_probs=96.1
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.|.+.++.+.. +|..+ ...+|+.|+++++.+. .++..+..+++|+.++++++.....+|. +
T Consensus 592 r~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-------------- 653 (1153)
T PLN03210 592 RLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-------------- 653 (1153)
T ss_pred EEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c--------------
Confidence 344444444433 44443 3456666666666665 4555555666666666666554444443 2
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------- 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------- 149 (190)
+.+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus 654 ----s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~ 728 (1153)
T PLN03210 654 ----SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNIS 728 (1153)
T ss_pred ----ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcC
Confidence 237788888888876555788888888888888888865444677655 67888888888874
Q ss_pred eEEeecccccccCCccccccccccc
Q 039561 150 YLNLSNNNLTGEIPSGIQLQGFHQS 174 (190)
Q Consensus 150 ~l~l~~N~l~g~~p~~~~~~~l~~~ 174 (190)
+|++++|.+. .+|..+.+.++..+
T Consensus 729 ~L~L~~n~i~-~lP~~~~l~~L~~L 752 (1153)
T PLN03210 729 WLDLDETAIE-EFPSNLRLENLDEL 752 (1153)
T ss_pred eeecCCCccc-cccccccccccccc
Confidence 6888888887 77776544444433
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=9.4e-13 Score=110.51 Aligned_cols=127 Identities=23% Similarity=0.294 Sum_probs=97.8
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCc-cccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPL-SLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~ 79 (190)
+|+.|++.+|.++...-+.+-++++|++|++++|++. .+|+ .+..+..|+.|++++|.+. .+|..+..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~--------- 428 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVAN--------- 428 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHh---------
Confidence 3567888899999877677888999999999999998 5664 4667888999999999954 67777766
Q ss_pred CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
++.|+.|...+|++. .+| .+..++.|+.+|++.|.++...-..--..++|++||+++|.
T Consensus 429 ---------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 429 ---------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ---------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 777888888888886 667 57788888888888888863322222233778888888887
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=2.5e-11 Score=85.72 Aligned_cols=119 Identities=23% Similarity=0.279 Sum_probs=40.0
Q ss_pred CcceeccCCccccCCCcccC-CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHH-HHHHHHHHhhc
Q 039561 2 LQQGLKIQHKFSRSFPTSTG-ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI-KKSLLALFMMK 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~~~~~l~~~~ 79 (190)
+++|++++|.++. + +.++ .+.+|+.|++++|.++ .+. .+..++.|+.|++++|.+.. +++.+ ..
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~--------- 86 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKN--------- 86 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH---------
T ss_pred ccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHh---------
Confidence 4567777777765 2 2444 4667777777777777 443 35567777777777777654 33333 23
Q ss_pred CCcccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceeccCc----cccCCCCCCEEe
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESID 144 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~ 144 (190)
+++|++|++++|+|...- -..+..+++|+.|++.+|.++ ..+. .+..+|+|+.||
T Consensus 87 ---------lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 87 ---------LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp ----------TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred ---------CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeC
Confidence 677777777777775311 133456677777777777776 2232 235567777665
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=1.1e-11 Score=99.00 Aligned_cols=157 Identities=28% Similarity=0.421 Sum_probs=101.9
Q ss_pred CcceeccCCccccCCCcccCCCC-CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALS-SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++.+++.+|.++. +++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|++. .+|.....
T Consensus 118 l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~---------- 184 (394)
T COG4886 118 LTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN---------- 184 (394)
T ss_pred eeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh----------
Confidence 4567777888776 666666664 8888888888888 66666777888888888888855 34544323
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------- 149 (190)
.+.++.|++++|++. .+|........|+.+.+++|.+. ..+..+..+.++..+.+.+|+
T Consensus 185 --------~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 185 --------LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred --------hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccc
Confidence 555666666666665 55554444555666666666433 344455555555555555554
Q ss_pred ----eEEeecccccccCCccccccccccccccCCccc
Q 039561 150 ----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~ 182 (190)
++++++|.++ .++....+..++.+.+++|.+.
T Consensus 255 ~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 255 SNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 5677777776 5555446677777777777443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.1e-12 Score=105.21 Aligned_cols=161 Identities=24% Similarity=0.291 Sum_probs=102.1
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
|+.+.+..|.+-. +|..+.++..|++++++.|++. .+|..+..++ |+.|-+++|++ ..+|+.+.. ...+..+
T Consensus 100 Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~-~~tl~~ld~s 174 (722)
T KOG0532|consen 100 LESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGL-LPTLAHLDVS 174 (722)
T ss_pred HHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc-ccCCccccc-chhHHHhhhh
Confidence 4455666666654 7888888888999999999888 7777776664 78888888884 456766652 3333222
Q ss_pred c---CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeec
Q 039561 79 K---GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSN 155 (190)
Q Consensus 79 ~---~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~ 155 (190)
+ ...|..++.+.+++.|.+..|++. .+|..+. .-.|..||++.|+++ .+|-.|.+|+.|+ ++-|.+
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq--------~l~Len 243 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQ--------VLQLEN 243 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhhe--------eeeecc
Confidence 1 123444455666666666666665 5565555 344556777777776 6666666666666 556788
Q ss_pred ccccccCCcccc----ccccccccccCC
Q 039561 156 NNLTGEIPSGIQ----LQGFHQSRFAGS 179 (190)
Q Consensus 156 N~l~g~~p~~~~----~~~l~~~~~~~n 179 (190)
|.++ ..|+.+. ...|+++..+..
T Consensus 244 NPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 244 NPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCCC-CChHHHHhccceeeeeeecchhc
Confidence 8887 5566552 333455544433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.3e-11 Score=92.63 Aligned_cols=123 Identities=21% Similarity=0.338 Sum_probs=84.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|+++++++|.++. +.+++.-.|.+++|++++|.++ .+.. +..+++|+.||+++|.+.. +-.|--.
T Consensus 286 LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~K----------- 350 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE-CVGWHLK----------- 350 (490)
T ss_pred hhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh-hhhhHhh-----------
Confidence 5677888888776 6666777788888888888887 4443 6677888888888887543 2222222
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC--ccccCCCCCCEEeCCCCc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP--ESIGSMKSLESIDFSANH 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~l~l~~N~ 149 (190)
+.+++.|.+++|.+. .+ ..++.+.+|..||+++|+|. .+. ..+++++.|+++.+.+|.
T Consensus 351 -------LGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 -------LGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -------hcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCC
Confidence 677888888888875 22 33667778888888888876 332 356777778776654443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=2e-11 Score=94.32 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=85.1
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---c-CCc--
Q 039561 9 QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---K-GKA-- 82 (190)
Q Consensus 9 ~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---~-~~~-- 82 (190)
+-.++. +|..+. +.-+.+++..|+|+...+.+|+.+++|+.+|+++|+++...|+.+.. ++++..+ . +.+
T Consensus 55 ~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh-hHhhhHHHhhcCCchhh
Confidence 334443 554332 45678899999999666678999999999999999998888887764 7777443 2 222
Q ss_pred -c-cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCc-cccCCCCCCEEeCCCCc
Q 039561 83 -F-EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE-SIGSMKSLESIDFSANH 149 (190)
Q Consensus 83 -~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~N~ 149 (190)
| ..|+++..++.|.+.-|++.....+.+..++++..|.+-.|.+. .++. .+..+.+++++.+..|.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 2 24555666666666556655444455555555555555555554 3332 44445555555444443
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=3.8e-10 Score=66.09 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=52.5
Q ss_pred CCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 90 NVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 90 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
++|++|++++|++....+.+|..+++|++|++++|.++...|..|..+++|+++++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468999999999995555788999999999999999997777899999999988877774
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=2.7e-10 Score=90.89 Aligned_cols=142 Identities=30% Similarity=0.421 Sum_probs=105.4
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHH--HHHHHHHHhhc
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI--KKSLLALFMMK 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~--~~~~~~l~~~~ 79 (190)
|+.|++++|.+.. +|..+..+++|+.|++++|+++ .+|......+.|+.|++++|++. .+|..+ ...+..+....
T Consensus 142 L~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 6789999999987 6667899999999999999999 77766557889999999999965 566643 22233333333
Q ss_pred C---CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 80 G---KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 80 ~---~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
. ..+..+..+..+..+.+.+|++. .++..++.+..++.|++++|.++ .++. ++...+++.+++++|.
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred CcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcc
Confidence 3 23455666777777778888776 44667778888888888888887 4444 7777788877766665
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=7.3e-10 Score=64.84 Aligned_cols=60 Identities=28% Similarity=0.339 Sum_probs=53.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcc
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF 60 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 60 (190)
.|++|++++|+++...+..+..+++|+++++++|.++...+..|..+++|+++++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999986567889999999999999999966678899999999999999974
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.7e-09 Score=76.48 Aligned_cols=109 Identities=29% Similarity=0.392 Sum_probs=37.3
Q ss_pred cCCCCCCcEEEcccCcccCcCCcccc-CCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561 20 TGALSSLESLHLHRNHLSGAIPLSLQ-NGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 20 l~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 98 (190)
+-+..+++.|++++|.|+ .+. .+. .+.+|+.|++++|.+.. +. .+.. ++.|+.|+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~------------------L~~L~~L~L~ 72 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPG------------------LPRLKTLDLS 72 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----------------------TT--EEE--
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccC------------------hhhhhhcccC
Confidence 445667899999999998 443 454 47899999999999764 32 2333 8899999999
Q ss_pred CCeecccCCccC-CCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCceEEeeccccc
Q 039561 99 KNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANHYLNLSNNNLT 159 (190)
Q Consensus 99 ~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~~l~l~~N~l~ 159 (190)
+|.++ .+.+.+ ..++.|+.|++++|.|...-. ..+..+++|+.|+ +.+|+++
T Consensus 73 ~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~--------L~~NPv~ 126 (175)
T PF14580_consen 73 NNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS--------LEGNPVC 126 (175)
T ss_dssp SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE---------TT-GGG
T ss_pred CCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee--------ccCCccc
Confidence 99998 454434 358899999999999974211 3456677788655 5566665
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=8.5e-10 Score=83.05 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=69.5
Q ss_pred CCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCee
Q 039561 23 LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF 102 (190)
Q Consensus 23 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 102 (190)
...|+.+++++|.|+ .+.++..-.|.++.|++++|.+... .. +.. +++|+.|++++|.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~------------------L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LAE------------------LPQLQLLDLSGNLL 341 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hhh------------------cccceEeecccchh
Confidence 355777888888887 7777777778888888888886532 21 333 77788888888887
Q ss_pred cccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 103 LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 103 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
+ .+-.|-..+-++++|.+++|.+. --+.+.++-+|..||++.|+
T Consensus 342 s-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 342 A-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred H-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccc
Confidence 6 55666566777788888888775 22345555566655544444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.3e-09 Score=82.50 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=17.1
Q ss_pred CCCCCcEEEcccCcccCcCCccc-cCCCCccEEeccCCccc
Q 039561 22 ALSSLESLHLHRNHLSGAIPLSL-QNGTHFEVLDLRENAFI 61 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~ 61 (190)
.+|+|+.|+++.|++.....+.. ..+++++.|.++.|.++
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence 44555555555555441111111 12345555555555544
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=9.6e-09 Score=82.65 Aligned_cols=155 Identities=24% Similarity=0.310 Sum_probs=107.3
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.+.+..|.+.. +-..+..++++..+++.+|.+. .+...+..+++|++|++++|.+...-+- ..
T Consensus 75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l--~~------------ 138 (414)
T KOG0531|consen 75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL--ST------------ 138 (414)
T ss_pred Hhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch--hh------------
Confidence 344566666665 3335778899999999999998 5554366789999999999997654332 22
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcc-ccCCCCCCEEeCCCCc------------
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES-IGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~N~------------ 149 (190)
++.|+.|++.+|.++ .+ ..+..+..|+.+++++|.++. +... ...+.+++.+++..|.
T Consensus 139 ------l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~ 209 (414)
T KOG0531|consen 139 ------LTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKK 209 (414)
T ss_pred ------ccchhhheeccCcch-hc-cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHH
Confidence 666889999999987 33 346668899999999999883 3332 4677788888888887
Q ss_pred --eEEeecccccccCCccccccc--cccccccCCcccC
Q 039561 150 --YLNLSNNNLTGEIPSGIQLQG--FHQSRFAGSELCG 183 (190)
Q Consensus 150 --~l~l~~N~l~g~~p~~~~~~~--l~~~~~~~n~l~~ 183 (190)
.+++..|.++ .+-....... ++.+.+.+|.++.
T Consensus 210 l~~~~l~~n~i~-~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 210 LVLLSLLDNKIS-KLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred HHHhhcccccce-eccCcccchhHHHHHHhcccCcccc
Confidence 4567777776 3322212222 6677777775443
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.2e-09 Score=90.61 Aligned_cols=129 Identities=29% Similarity=0.332 Sum_probs=80.5
Q ss_pred CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561 25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG 104 (190)
Q Consensus 25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 104 (190)
.|.+.+.++|.++ ....++.-++.++.|++++|++.... .+.. ++.|++||++.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~------------------l~~LkhLDlsyN~L~- 222 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRR------------------LPKLKHLDLSYNCLR- 222 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh------------------cccccccccccchhc-
Confidence 3555666666666 55556666677777777777764321 3333 677777777777776
Q ss_pred cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeeccccccc--CCccccccccccccccCCccc
Q 039561 105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGE--IPSGIQLQGFHQSRFAGSELC 182 (190)
Q Consensus 105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~--~p~~~~~~~l~~~~~~~n~l~ 182 (190)
.+|.--..-.+|+.|.+++|.++ .+ ..+.++++|+ .||+++|-+.+. +-..+.+..|..+++.||.+|
T Consensus 223 ~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~--------~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 223 HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLY--------GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhh--------ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 55542222235777777777776 22 2345555566 455777777632 222346888899999999887
Q ss_pred CCC
Q 039561 183 GAP 185 (190)
Q Consensus 183 ~~~ 185 (190)
-+|
T Consensus 293 c~p 295 (1096)
T KOG1859|consen 293 CAP 295 (1096)
T ss_pred cCH
Confidence 655
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.7e-08 Score=78.07 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCCCCcEEEcccCcccCcCC--ccccCCCCccEEeccCCccc
Q 039561 22 ALSSLESLHLHRNHLSGAIP--LSLQNGTHFEVLDLRENAFI 61 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~ 61 (190)
++.+|+.+.+.+..+. ..+ .....+++++.||+++|-+.
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~ 159 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH 159 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH
Confidence 4555555555555544 333 13344555555555555543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.34 E-value=3.5e-07 Score=79.53 Aligned_cols=101 Identities=27% Similarity=0.320 Sum_probs=45.7
Q ss_pred CCcEEEcccCc--ccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCee
Q 039561 25 SLESLHLHRNH--LSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF 102 (190)
Q Consensus 25 ~L~~l~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 102 (190)
.|+.|-+..|. +....+..|..++.|+.||+++|.-.+.+|..++. +-+|++|++++..+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~------------------Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE------------------LVHLRYLDLSDTGI 607 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh------------------hhhhhcccccCCCc
Confidence 45555555543 22111222444555555555555444455555544 44444444544444
Q ss_pred cccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEe
Q 039561 103 LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID 144 (190)
Q Consensus 103 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~ 144 (190)
. .+|..++++.+|++|++..+.-...+|.....+.+|++|.
T Consensus 608 ~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 608 S-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred c-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 4 4444444444455554444433323333333344444443
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=7.8e-08 Score=73.54 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=17.1
Q ss_pred CCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcc
Q 039561 22 ALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAF 60 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~ 60 (190)
.-+.|+++...+|++... +...|...+.|+.+.+..|.+
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc
Confidence 345555555555554411 112233334455555554443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=5.9e-07 Score=78.10 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=75.1
Q ss_pred CcceeccCCc--cccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561 2 LQQGLKIQHK--FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79 (190)
Q Consensus 2 L~~L~l~~n~--l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~ 79 (190)
|++|.+.+|. +.......|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+..
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~--------- 616 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGN--------- 616 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHH---------
Confidence 4667777775 33323334777999999999998876799999999999999999999965 78998887
Q ss_pred CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccC
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQN 124 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 124 (190)
+..|++|++..+.-...+|.....+.+|++|.+...
T Consensus 617 ---------Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 617 ---------LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ---------HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 566666666655533344454555666766666544
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.1e-06 Score=47.67 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=25.2
Q ss_pred CCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561 91 VLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 127 (190)
+|++|++++|+++ .+|+.++.+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5777777777777 55666777777777777777776
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.9e-07 Score=77.86 Aligned_cols=136 Identities=24% Similarity=0.280 Sum_probs=89.7
Q ss_pred CccccCCCCccEEeccCCcccCCCc-HHHHHHHHHH---------H---hh-cCCcccccCCCCCCcEEEccCCeecccC
Q 039561 41 PLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLAL---------F---MM-KGKAFEYSTNLNVLRVIELSKNNFLGEI 106 (190)
Q Consensus 41 ~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l---------~---~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 106 (190)
|-.+..+..|++|.++++.++.... ..+...+..| . .. .+.+...+ -|..|...+.+.|.+. .+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-hH
Confidence 5566778899999999988764211 1122222222 1 11 12222111 1456777788888876 56
Q ss_pred CccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCcccccccc
Q 039561 107 AKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGIQLQGF 171 (190)
Q Consensus 107 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~~~~~l 171 (190)
...+.-+++++.|+|++|+++ ... .+..+++|++||+++|+ .|.+++|.++ ++-..-++++|
T Consensus 180 D~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~-tL~gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT-TLRGIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHH-hhhhHHhhhhh
Confidence 666777788999999999987 333 78888889988888887 6788888887 44443467777
Q ss_pred ccccccCCcc
Q 039561 172 HQSRFAGSEL 181 (190)
Q Consensus 172 ~~~~~~~n~l 181 (190)
..++++.|-+
T Consensus 257 ~~LDlsyNll 266 (1096)
T KOG1859|consen 257 YGLDLSYNLL 266 (1096)
T ss_pred hccchhHhhh
Confidence 7888877743
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.8e-06 Score=45.98 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=17.5
Q ss_pred CCcEEEcccCcccCcCCccccCCCCccEEeccCCccc
Q 039561 25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFI 61 (190)
Q Consensus 25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 61 (190)
+|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555555555555555543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=8.4e-07 Score=68.03 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=43.5
Q ss_pred CcceeccCCccccCCCc----ccCCCCCCcEEEcccCcccCcCC-------------ccccCCCCccEEeccCCcccC
Q 039561 2 LQQGLKIQHKFSRSFPT----STGALSSLESLHLHRNHLSGAIP-------------LSLQNGTHFEVLDLRENAFIR 62 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~l~~n~~~~~~~-------------~~~~~l~~L~~L~l~~n~~~~ 62 (190)
|++++|+.|-+...-+. -+.....|+.|++.+|.+...-. .....-+.|+.+...+|.+..
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 67899999988754332 46678899999999998862111 122345789999999999653
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=2.2e-07 Score=74.79 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=64.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
+|+.+++.+|.+.. +...+..+++|+++++++|.|+...+ +..++.|+.|++++|.+... . .+.
T Consensus 96 ~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~-~-~~~----------- 159 (414)
T KOG0531|consen 96 SLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI-S-GLE----------- 159 (414)
T ss_pred ceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc-c-CCc-----------
Confidence 35678888888887 44336778999999999999984333 45667789999999986532 1 111
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCcc-CCCCCCCcEEEcccCcce
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKG-VTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~ 127 (190)
.+..++.+++++|.+...-+ . ...+.+++.+.++.|.+.
T Consensus 160 -------~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 160 -------SLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred -------cchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 14455666666666552222 1 244555555555555544
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=1.2e-05 Score=57.51 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=75.5
Q ss_pred CCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeec
Q 039561 24 SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFL 103 (190)
Q Consensus 24 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 103 (190)
.....+++++|.+. ..+ .|..++.|.+|.+.+|.+....|..-.. ++++..|.+.+|++.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~------------------~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTF------------------LPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhh------------------ccccceEEecCcchh
Confidence 45677889999987 444 5677889999999999988766654433 778999999999886
Q ss_pred ccCC--ccCCCCCCCcEEEcccCcceeccCc----cccCCCCCCEEeCCCC
Q 039561 104 GEIA--KGVTNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESIDFSAN 148 (190)
Q Consensus 104 ~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~l~~N 148 (190)
.+. +.+..+++|+.|.+-+|.++ ..+. -+..+++|+.||++.=
T Consensus 102 -~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 102 -ELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred -hhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence 332 23566789999999888887 3332 2467788888886544
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=2.1e-06 Score=64.18 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=92.7
Q ss_pred CcceeccCCccccC----CCcccCCCCCCcEEEcccCccc---CcCC-------ccccCCCCccEEeccCCcccCCCcHH
Q 039561 2 LQQGLKIQHKFSRS----FPTSTGALSSLESLHLHRNHLS---GAIP-------LSLQNGTHFEVLDLRENAFIRDVPKW 67 (190)
Q Consensus 2 L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~n~~~---~~~~-------~~~~~l~~L~~L~l~~n~~~~~~p~~ 67 (190)
++.+++++|.|... +...+.+-.+|+..++++-... ..++ ..+..+|+++..+++.|.|....|+.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 46678888887754 3345556677888777664322 1122 23456788999999999988888887
Q ss_pred HHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCC-ccC-------------CCCCCCcEEEcccCcceeccCc-
Q 039561 68 IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIA-KGV-------------TNPGASQTLNLSQNSFSRTIPE- 132 (190)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~-------------~~l~~L~~L~l~~n~l~~~~p~- 132 (190)
+.. .|+....+.+|.+++|.+. .+. ..+ ..-+.|+....++|++.. .+.
T Consensus 112 L~d--------------~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~ 175 (388)
T COG5238 112 LGD--------------LISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKE 175 (388)
T ss_pred HHH--------------HHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHH
Confidence 766 4444777888888888875 221 111 234678888888887752 222
Q ss_pred ----cccCCCCCCEEeCCCCc---------------------eEEeeccccc
Q 039561 133 ----SIGSMKSLESIDFSANH---------------------YLNLSNNNLT 159 (190)
Q Consensus 133 ----~l~~l~~L~~l~l~~N~---------------------~l~l~~N~l~ 159 (190)
.+.....|+.+.+..|- .||+.+|.|+
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 23334567777777775 6778888776
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=5.1e-07 Score=60.73 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=82.0
Q ss_pred ceeccCCccccCCCc---ccCCCCCCcEEEcccCcccCcCCccccC-CCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561 4 QGLKIQHKFSRSFPT---STGALSSLESLHLHRNHLSGAIPLSLQN-GTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79 (190)
Q Consensus 4 ~L~l~~n~l~~~~p~---~l~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~ 79 (190)
.++++.|.+-. +++ .+.....|+..++++|.+. .+|..|.. ++..+++++++|.+. .+|..+..
T Consensus 31 ~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa--------- 98 (177)
T KOG4579|consen 31 FLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA--------- 98 (177)
T ss_pred hcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh---------
Confidence 35677776543 343 3445667788899999998 77877754 458899999999965 57887766
Q ss_pred CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcc
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES 133 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 133 (190)
|+.|+.++++.|.+. ..|..+..+.+|..|+..+|.+. .+|-.
T Consensus 99 ---------m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 99 ---------MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred ---------hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 888999999999998 67877777899999999888876 56644
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=2.7e-07 Score=62.08 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=72.6
Q ss_pred CCcEEEcccCcccCcCC---ccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe
Q 039561 25 SLESLHLHRNHLSGAIP---LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN 101 (190)
Q Consensus 25 ~L~~l~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 101 (190)
.+..++++++.+- .++ ..+.....|...++++|.+. .+|+.+.. ..+.++.+++++|.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-----------------kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-----------------KFPTATTLNLANNE 88 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-----------------ccchhhhhhcchhh
Confidence 4556677777654 333 23344567777888888854 46665543 25577888888888
Q ss_pred ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 102 FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 102 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
++ .+|..+..++.|+.++++.|.+. ..|.-+..+.++..|+..+|.
T Consensus 89 is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 89 IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 87 77888888888888888888887 667767667777766655555
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.2e-06 Score=70.17 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=73.5
Q ss_pred CcceeccCCccc-cCCCcccCC-CCCCcEEEcccCcccC-cCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561 2 LQQGLKIQHKFS-RSFPTSTGA-LSSLESLHLHRNHLSG-AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78 (190)
Q Consensus 2 L~~L~l~~n~l~-~~~p~~l~~-l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~ 78 (190)
|+.|+++|...- ...|..++. +|+|+.|.+.+-.+.. ++.....++++|..||++++++... .+++.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~-------- 193 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR-------- 193 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc--------
Confidence 567788775432 224444554 7999999998887752 2334456789999999999997543 34443
Q ss_pred cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceecc--C----ccccCCCCCCEEeCCCCc
Q 039561 79 KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTI--P----ESIGSMKSLESIDFSANH 149 (190)
Q Consensus 79 ~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~--p----~~l~~l~~L~~l~l~~N~ 149 (190)
+++|++|.+.+-.+.. .--..+.++++|++||+|........ . +.-..+|+|+.||.++..
T Consensus 194 ----------LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 194 ----------LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ----------cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 5566666555444431 01113445666666666665433111 0 111345666666555443
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00023 Score=56.88 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=17.4
Q ss_pred CCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 114 GASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 114 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
.+|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 36677777766654 3343322 35666665444
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.7e-06 Score=63.63 Aligned_cols=144 Identities=18% Similarity=0.129 Sum_probs=93.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCc-ccCcCC--ccccCCCCccEEeccCCcccCCCc----HHHHHHHHH
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNH-LSGAIP--LSLQNGTHFEVLDLRENAFIRDVP----KWIKKSLLA 74 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~-~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~~~~~ 74 (190)
|+.++++|+++...+...++.-.+|+.++++.+. ++ ... -.+..++.|..|+++|+.+....- ..++..+.+
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 5677888888888777778888889999998865 33 222 234567888999999988654321 122223333
Q ss_pred HHhhc-------CCcccccCCCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccCcceeccCcc---ccCCCCCCEE
Q 039561 75 LFMMK-------GKAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQNSFSRTIPES---IGSMKSLESI 143 (190)
Q Consensus 75 l~~~~-------~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~l 143 (190)
|+... ..+..-...++++.+|||+.|. ++......+..++.|++|.+++|+. .+|.. ++..++|.+|
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEE
Confidence 32110 0011112358899999999765 4433445567789999999999875 45653 5677888877
Q ss_pred eCCCC
Q 039561 144 DFSAN 148 (190)
Q Consensus 144 ~l~~N 148 (190)
|+.+.
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 76444
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00054 Score=54.78 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=6.5
Q ss_pred CCCcEEEcccCccc
Q 039561 24 SSLESLHLHRNHLS 37 (190)
Q Consensus 24 ~~L~~l~l~~n~~~ 37 (190)
.+++.|++++|.++
T Consensus 52 ~~l~~L~Is~c~L~ 65 (426)
T PRK15386 52 RASGRLYIKDCDIE 65 (426)
T ss_pred cCCCEEEeCCCCCc
Confidence 44444444444444
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=7.7e-05 Score=63.69 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=45.4
Q ss_pred CCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc
Q 039561 88 NLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 88 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~ 149 (190)
++++|..||+++.+++ .+ ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||++...
T Consensus 171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 4889999999999887 33 557888999999887766652 112346678899988888776
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.0013 Score=47.34 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=70.3
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
..+|+.+|++-. ++ .+..++.|.+|.+..|+|+..-|.--.-++.++.|.+.+|.+.. +.+.-. +
T Consensus 45 d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~p--L---------- 109 (233)
T KOG1644|consen 45 DAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDP--L---------- 109 (233)
T ss_pred ceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcch--h----------
Confidence 457888888765 32 57788999999999999994434333346789999999999643 322111 1
Q ss_pred ccccCCCCCCcEEEccCCeecccCCc----cCCCCCCCcEEEccc
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAK----GVTNPGASQTLNLSQ 123 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~l~~ 123 (190)
..++.|+.|.+-+|.++. .+. .+..++.|++||...
T Consensus 110 ----a~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ----ASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----ccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 128889999999998862 221 245678899998754
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.00084 Score=51.23 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=45.3
Q ss_pred cceeccCCccccC--CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcH
Q 039561 3 QQGLKIQHKFSRS--FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPK 66 (190)
Q Consensus 3 ~~L~l~~n~l~~~--~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 66 (190)
+.+++.+|.++.. +...+.++|.|++|+++.|.+...+...-..+.+|+.+.+.+..+.+....
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 5678888887742 333456899999999999998855443224667889998888777654443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00062 Score=50.63 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=60.2
Q ss_pred cCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcc--cCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561 20 TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF--IRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL 97 (190)
Q Consensus 20 l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l 97 (190)
...+..|+.+.+.+..++. + ..+..++.|++|.++.|.+ .+.++...-. +++|+++++
T Consensus 39 ~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~------------------~P~l~~l~l 98 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK------------------APNLKVLNL 98 (260)
T ss_pred cccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhh------------------CCceeEEee
Confidence 3345666666666666652 2 1345677888888888843 3333332222 678888888
Q ss_pred cCCeecccCCccC---CCCCCCcEEEcccCcceeccCc----cccCCCCCCEEe
Q 039561 98 SKNNFLGEIAKGV---TNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESID 144 (190)
Q Consensus 98 ~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~ 144 (190)
++|++.. +.++ ..+..|..|++.+|..++ +.+ .+.-+++|.++|
T Consensus 99 s~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 99 SGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cCCcccc--ccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 8888752 3333 344556677777776663 222 234566676665
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.0029 Score=47.84 Aligned_cols=128 Identities=17% Similarity=0.237 Sum_probs=81.6
Q ss_pred ccCCCCCCcEEEcccCcccCcCCcc----ccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC--cc---------
Q 039561 19 STGALSSLESLHLHRNHLSGAIPLS----LQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK--AF--------- 83 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~--~~--------- 83 (190)
.+..+|+++.+++|+|.+....|.. +...+.+.+|.+++|.+......-++..+..|-..+.. .|
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4567899999999999998666643 45667899999999987655555555445444221100 00
Q ss_pred ---c---------ccCCCCCCcEEEccCCeecccCCcc--------CCCCCCCcEEEcccCcceec----cCccccCCCC
Q 039561 84 ---E---------YSTNLNVLRVIELSKNNFLGEIAKG--------VTNPGASQTLNLSQNSFSRT----IPESIGSMKS 139 (190)
Q Consensus 84 ---~---------~~~~~~~L~~L~l~~n~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~ 139 (190)
+ .+.....++++.+..|.|. |.. +..+.+|+.||+..|-++-. +...+..++.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 0 0112346777888887775 332 23467888999988887622 2234456667
Q ss_pred CCEEeCCCCc
Q 039561 140 LESIDFSANH 149 (190)
Q Consensus 140 L~~l~l~~N~ 149 (190)
|+.|.+..|.
T Consensus 244 lrEL~lnDCl 253 (388)
T COG5238 244 LRELRLNDCL 253 (388)
T ss_pred hhhccccchh
Confidence 7888877775
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.41 E-value=0.0027 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=9.5
Q ss_pred CcEEEccCCeecccCCccCC
Q 039561 92 LRVIELSKNNFLGEIAKGVT 111 (190)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~ 111 (190)
|++|++++|+++ .+|.+++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.00011 Score=55.86 Aligned_cols=148 Identities=16% Similarity=0.067 Sum_probs=70.9
Q ss_pred CcceeccCCccccC-CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhhc
Q 039561 2 LQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMMK 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~~ 79 (190)
|+.+|++...++.. +-.-++...+|+.+.+.++++...+-..+..-..|+.++++.+.-..+.. ..+..+++.|..+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 34555555554421 11123345666666666666664444555556677777777655221111 12222233332221
Q ss_pred CCcc----c----ccCC-CCCCcEEEccCCeec---ccCCccCCCCCCCcEEEcccCc-ceeccCccccCCCCCCEEeCC
Q 039561 80 GKAF----E----YSTN-LNVLRVIELSKNNFL---GEIAKGVTNPGASQTLNLSQNS-FSRTIPESIGSMKSLESIDFS 146 (190)
Q Consensus 80 ~~~~----~----~~~~-~~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~ 146 (190)
-.+- + .+.. -+++..|+++++.-. ..+..-...++.|.+||++.|. ++...-.+|.+.+-|+++.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 1110 0 1111 234555555543311 0111112456777788887753 443334456677777877777
Q ss_pred CCc
Q 039561 147 ANH 149 (190)
Q Consensus 147 ~N~ 149 (190)
.+.
T Consensus 347 RCY 349 (419)
T KOG2120|consen 347 RCY 349 (419)
T ss_pred hhc
Confidence 775
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.32 E-value=0.002 Score=29.16 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=14.1
Q ss_pred CCcEEEcccCcceeccCccccC
Q 039561 115 ASQTLNLSQNSFSRTIPESIGS 136 (190)
Q Consensus 115 ~L~~L~l~~n~l~~~~p~~l~~ 136 (190)
+|++|++++|.++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3677777777777 66665544
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.00095 Score=50.94 Aligned_cols=97 Identities=25% Similarity=0.249 Sum_probs=58.9
Q ss_pred CCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcc
Q 039561 47 GTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSF 126 (190)
Q Consensus 47 l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 126 (190)
.+.++.+|+.+|.++.. .+ ++.-+. ++|.++.|+++.|++...+...-.....|+.|-+.+..+
T Consensus 70 ~~~v~elDL~~N~iSdW-se-I~~ile--------------~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDW-SE-IGAILE--------------QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccH-HH-HHHHHh--------------cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 45667777777776531 11 111122 388888899988888744332213456788888877766
Q ss_pred eec-cCccccCCCCCCEEeCCCCc--eEEeeccccc
Q 039561 127 SRT-IPESIGSMKSLESIDFSANH--YLNLSNNNLT 159 (190)
Q Consensus 127 ~~~-~p~~l~~l~~L~~l~l~~N~--~l~l~~N~l~ 159 (190)
... ....+..+|.++.+.++.|. .+.+++|.+.
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e 169 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE 169 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence 522 23456677888888888885 4455555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.005 Score=45.93 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=61.3
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccC--cccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRN--HLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
+.+++.+..++. -..+..+++|+.|.++.| .+.+.++...-.+++|+++.+++|.+.. +..+.. ++.
T Consensus 46 e~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~p-l~~------ 114 (260)
T KOG2739|consen 46 ELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRP-LKE------ 114 (260)
T ss_pred hhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccch-hhh------
Confidence 344555555543 224667899999999999 6665555444556999999999999753 333322 221
Q ss_pred CcccccCCCCCCcEEEccCCeecccC---CccCCCCCCCcEEEc
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEI---AKGVTNPGASQTLNL 121 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~---p~~~~~l~~L~~L~l 121 (190)
+.+|..|++..|.....- -..+.-+++|.+|+.
T Consensus 115 --------l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 115 --------LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred --------hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 566777777777654210 012233456666654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.63 E-value=0.032 Score=36.97 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=48.8
Q ss_pred ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561 19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 98 (190)
.+...++|+.+.+.. .+...-...|..++.++.+.+..+ +. .++... +..++.++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~-----------------F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNA-----------------FSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTT-----------------TTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceee-----------------eeccccccccccc
Confidence 455666788887764 455233455666767888877664 22 222211 1235567777775
Q ss_pred CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCC
Q 039561 99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSA 147 (190)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~ 147 (190)
. .+.......+..++.++.+++..+ ++..-...+..+ +|+.+.+..
T Consensus 67 ~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 67 N-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp S-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred c-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 4 332222345666777777777665 443344456665 677666543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.83 E-value=0.1 Score=34.47 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=16.3
Q ss_pred ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccC
Q 039561 19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRE 57 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 57 (190)
.+...++++.+.+..+ +...-...|..++.++.+.+..
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc
Confidence 4445556666666553 4322223444454566666543
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.60 E-value=0.026 Score=23.68 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=4.6
Q ss_pred CCcEEEcccCccc
Q 039561 25 SLESLHLHRNHLS 37 (190)
Q Consensus 25 ~L~~l~l~~n~~~ 37 (190)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.0014 Score=49.52 Aligned_cols=37 Identities=38% Similarity=0.488 Sum_probs=19.3
Q ss_pred CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcc
Q 039561 22 ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF 60 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 60 (190)
.++.|++|.++-|.|+..-| +..++.|+.|+++.|.+
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCI 75 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhccc
Confidence 45555555555555553222 34455555555555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.012 Score=44.78 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=52.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC--ccccCCCCccEEeccCCcccCCCcHHHH
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP--LSLQNGTHFEVLDLRENAFIRDVPKWIK 69 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 69 (190)
|++|.|+=|.|+..- .+...++|+.|+++.|.|. .+. ..+.++++|+.|-+..|.-.+..+....
T Consensus 43 lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 43 LEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred ceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 678899999988633 3678899999999999998 444 3567899999999999987787776543
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.92 E-value=0.15 Score=23.69 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=8.1
Q ss_pred CCCcEEEcccCccc
Q 039561 24 SSLESLHLHRNHLS 37 (190)
Q Consensus 24 ~~L~~l~l~~n~~~ 37 (190)
++|++|++++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.92 E-value=0.15 Score=23.69 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=8.1
Q ss_pred CCCcEEEcccCccc
Q 039561 24 SSLESLHLHRNHLS 37 (190)
Q Consensus 24 ~~L~~l~l~~n~~~ 37 (190)
++|++|++++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.43 E-value=0.1 Score=23.78 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=7.3
Q ss_pred CCccEEeccCCcccC
Q 039561 48 THFEVLDLRENAFIR 62 (190)
Q Consensus 48 ~~L~~L~l~~n~~~~ 62 (190)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455666666666544
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.28 E-value=0.0098 Score=44.04 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=47.0
Q ss_pred cCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccC
Q 039561 20 TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSK 99 (190)
Q Consensus 20 l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 99 (190)
+..+...+.+|++.|+.. .....|.-++.+..+|++.|++ ...|..+.+ ...+..+++..
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q------------------~~e~~~~~~~~ 97 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQ------------------QRETVNAASHK 97 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHH------------------HHHHHHHHhhc
Confidence 445566666777777665 4555555556666666666663 234544443 33344444444
Q ss_pred CeecccCCccCCCCCCCcEEEcccCcce
Q 039561 100 NNFLGEIAKGVTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 100 n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 127 (190)
|..+ ..|..++..+.++.++.-.|.++
T Consensus 98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchh-hCCccccccCCcchhhhccCcch
Confidence 5444 45555555555555555555443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.78 E-value=0.022 Score=42.26 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=63.9
Q ss_pred ccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEccc
Q 039561 44 LQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ 123 (190)
Q Consensus 44 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 123 (190)
+..+...+.||++.|++- .....+.. +..+..++++.|.+. .+|..++....+..+++..
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~------------------~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSI------------------LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHH------------------HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence 334567788888888843 33344433 455777889999987 7888898888899999988
Q ss_pred CcceeccCccccCCCCCCEEeCCCCc
Q 039561 124 NSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 124 n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
|..+ ..|.+++..+.++.++...|.
T Consensus 98 n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 98 NNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred cchh-hCCccccccCCcchhhhccCc
Confidence 8887 788889999999877766655
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.43 E-value=0.15 Score=36.92 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=7.4
Q ss_pred CccEEeccCCcccC
Q 039561 49 HFEVLDLRENAFIR 62 (190)
Q Consensus 49 ~L~~L~l~~n~~~~ 62 (190)
.++.+|.++..+..
T Consensus 102 ~IeaVDAsds~I~~ 115 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY 115 (221)
T ss_pred eEEEEecCCchHHH
Confidence 45555666555443
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.38 E-value=0.75 Score=21.59 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=10.2
Q ss_pred CCcEEEcccCcceeccCc
Q 039561 115 ASQTLNLSQNSFSRTIPE 132 (190)
Q Consensus 115 ~L~~L~l~~n~l~~~~p~ 132 (190)
.|+.|++++|.++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 5554
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.54 E-value=0.015 Score=47.81 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=31.5
Q ss_pred CcceeccCCccccC----CCcccCCC-CCCcEEEcccCcccCc----CCccccCCCCccEEeccCCccc
Q 039561 2 LQQGLKIQHKFSRS----FPTSTGAL-SSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFI 61 (190)
Q Consensus 2 L~~L~l~~n~l~~~----~p~~l~~l-~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 61 (190)
|+.|++++|.+... +...+... +.+++|++..+.++.. +.+.+.....++.++++.|.+.
T Consensus 117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 45667777766632 11122222 4556666666666522 2233334556666677766653
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.63 E-value=1.1 Score=21.28 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=9.7
Q ss_pred CCccEEeccCCcccC
Q 039561 48 THFEVLDLRENAFIR 62 (190)
Q Consensus 48 ~~L~~L~l~~n~~~~ 62 (190)
++|++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356777777777643
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.08 E-value=0.21 Score=36.23 Aligned_cols=68 Identities=15% Similarity=-0.016 Sum_probs=40.4
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccc-cCCCCccEEeccCCc-ccCCCcHHHHH
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSL-QNGTHFEVLDLRENA-FIRDVPKWIKK 70 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~-~~~~~p~~~~~ 70 (190)
+.++.++..|..+--+.+.+++.++.+.+.++.--+.+. +.+ ...++|+.|++++|. ++...-.++..
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence 445666666665444566778888888887776432221 111 135789999999875 44333344443
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.91 E-value=1.5 Score=20.58 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=10.1
Q ss_pred CCCcEEEcccCccc
Q 039561 24 SSLESLHLHRNHLS 37 (190)
Q Consensus 24 ~~L~~l~l~~n~~~ 37 (190)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777776
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.70 E-value=0.5 Score=38.49 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=16.7
Q ss_pred CCCCcEEEcccCcccCc--CCccccCCCCccEEeccC
Q 039561 23 LSSLESLHLHRNHLSGA--IPLSLQNGTHFEVLDLRE 57 (190)
Q Consensus 23 l~~L~~l~l~~n~~~~~--~~~~~~~l~~L~~L~l~~ 57 (190)
.+.|+.+.+..+.-... +-......+.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45555555555432212 112233456666666665
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=61.39 E-value=2.7 Score=34.21 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=21.1
Q ss_pred cCCCCCCcEEEcccC-cccCcCC----ccccCCCCccEEeccCCc
Q 039561 20 TGALSSLESLHLHRN-HLSGAIP----LSLQNGTHFEVLDLRENA 59 (190)
Q Consensus 20 l~~l~~L~~l~l~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~ 59 (190)
....+.|+.++++.+ ......+ .....+..++.++++++.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 345677777777652 1110111 122334667777777766
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.76 E-value=24 Score=15.99 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=6.7
Q ss_pred CCCCEEeCCCCc
Q 039561 138 KSLESIDFSANH 149 (190)
Q Consensus 138 ~~L~~l~l~~N~ 149 (190)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666655553
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.58 E-value=18 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred CCCCcEEEcccCcceeccCc--cc-cCCCCCCEEeCCCC
Q 039561 113 PGASQTLNLSQNSFSRTIPE--SI-GSMKSLESIDFSAN 148 (190)
Q Consensus 113 l~~L~~L~l~~n~l~~~~p~--~l-~~l~~L~~l~l~~N 148 (190)
.+.+..+.+++|++.. +.. .+ ...++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccc
Confidence 3456667778887652 211 11 23467888887777
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.79 E-value=99 Score=25.98 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=13.4
Q ss_pred CccEEeccCCcccCCCcHHH
Q 039561 49 HFEVLDLRENAFIRDVPKWI 68 (190)
Q Consensus 49 ~L~~L~l~~n~~~~~~p~~~ 68 (190)
.+.+++++.|..-..+|..+
T Consensus 215 ~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred cccccccccCCCCccchhHH
Confidence 45677788777666666544
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=32.40 E-value=24 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=19.3
Q ss_pred CCCCcEEEcccCcccCcCC-ccc-cCCCCccEEeccCCc
Q 039561 23 LSSLESLHLHRNHLSGAIP-LSL-QNGTHFEVLDLRENA 59 (190)
Q Consensus 23 l~~L~~l~l~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~ 59 (190)
...|+++..+++...+..+ ..+ .+.++|+++.+..++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 4556666666554321211 111 234677777777765
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.92 E-value=33 Score=34.85 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=12.8
Q ss_pred ccCCeecccCCccCCCCCCCcEEEcccCcc
Q 039561 97 LSKNNFLGEIAKGVTNPGASQTLNLSQNSF 126 (190)
Q Consensus 97 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 126 (190)
|++|+|...-+..|..+.+|+.|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 344444422223344444444444444443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.33 E-value=38 Score=28.75 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCCCCcEEEcccCcccCcCC---ccccCCCCccEEeccCC
Q 039561 22 ALSSLESLHLHRNHLSGAIP---LSLQNGTHFEVLDLREN 58 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n 58 (190)
+.+.+..+.+++|++- .+. .--...|.|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 4566677777777765 221 11123467777777777
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.15 E-value=46 Score=33.95 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=19.8
Q ss_pred eccCCccccCCCcccCCCCCCcEEEcccCccc
Q 039561 6 LKIQHKFSRSFPTSTGALSSLESLHLHRNHLS 37 (190)
Q Consensus 6 ~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~ 37 (190)
+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45667766643445566667777777766554
Done!