Query 039561
Match_columns 190
No_of_seqs 136 out of 1135
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.2E-30 2.1E-34 217.3 10.8 188 2-190 492-749 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-27 1.5E-31 180.8 13.5 187 1-190 102-313 (313)
3 3rgz_A Protein brassinosteroid 99.9 8.8E-26 3E-30 191.9 10.9 182 2-184 444-719 (768)
4 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-25 5.7E-30 171.9 10.4 181 1-183 77-282 (313)
5 1ozn_A Reticulon 4 receptor; N 99.9 7.9E-23 2.7E-27 154.8 14.4 178 1-179 33-235 (285)
6 4fcg_A Uncharacterized protein 99.9 9.8E-24 3.3E-28 163.1 9.5 173 2-180 83-288 (328)
7 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.7E-27 151.5 11.9 130 2-149 37-166 (251)
8 4fcg_A Uncharacterized protein 99.9 9.7E-23 3.3E-27 157.5 11.1 179 1-182 105-314 (328)
9 2z62_A TOLL-like receptor 4, v 99.9 4.1E-22 1.4E-26 150.2 13.5 179 1-180 29-235 (276)
10 2o6q_A Variable lymphocyte rec 99.9 1.2E-21 4E-26 147.4 15.4 160 2-180 39-216 (270)
11 4eco_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 171.1 8.8 182 1-185 207-449 (636)
12 1ozn_A Reticulon 4 receptor; N 99.9 7.2E-22 2.5E-26 149.5 13.2 184 1-185 57-265 (285)
13 2z66_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 152.0 11.7 179 2-182 54-261 (306)
14 3v47_A TOLL-like receptor 5B a 99.9 4.3E-22 1.5E-26 159.6 12.0 94 92-185 277-387 (455)
15 2o6s_A Variable lymphocyte rec 99.9 5.7E-22 1.9E-26 143.6 11.5 147 2-166 30-185 (208)
16 3m19_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 143.5 14.4 160 2-182 16-192 (251)
17 1p9a_G Platelet glycoprotein I 99.9 1.7E-21 5.7E-26 148.2 12.6 156 2-179 33-205 (290)
18 3rfs_A Internalin B, repeat mo 99.9 2E-21 7E-26 146.3 11.7 162 2-166 65-242 (272)
19 3rfs_A Internalin B, repeat mo 99.9 8.4E-21 2.9E-25 142.9 14.4 159 1-181 42-217 (272)
20 1wwl_A Monocyte differentiatio 99.9 2.8E-22 9.4E-27 153.8 6.2 60 2-62 97-163 (312)
21 1xku_A Decorin; proteoglycan, 99.9 6.6E-21 2.2E-25 147.0 13.9 180 2-186 54-280 (330)
22 2z62_A TOLL-like receptor 4, v 99.9 1.9E-21 6.6E-26 146.5 10.5 161 2-164 54-242 (276)
23 3v47_A TOLL-like receptor 5B a 99.9 1.7E-21 5.7E-26 156.2 10.6 100 83-182 292-408 (455)
24 4ecn_A Leucine-rich repeat pro 99.9 1.6E-21 5.6E-26 166.9 10.8 181 1-185 449-689 (876)
25 2z80_A TOLL-like receptor 2, v 99.9 1.1E-21 3.6E-26 152.8 8.4 185 1-186 53-294 (353)
26 1wwl_A Monocyte differentiatio 99.9 1.8E-21 6E-26 149.3 9.3 180 2-185 65-290 (312)
27 3zyi_A Leucine-rich repeat-con 99.9 6.5E-21 2.2E-25 153.0 12.6 182 2-186 77-283 (452)
28 3zyi_A Leucine-rich repeat-con 99.8 5.6E-21 1.9E-25 153.4 12.0 176 1-179 100-300 (452)
29 3zyj_A Leucine-rich repeat-con 99.8 4.7E-21 1.6E-25 153.3 11.4 175 2-179 90-289 (440)
30 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-21 1E-25 149.2 9.7 183 2-186 56-281 (332)
31 4eco_A Uncharacterized protein 99.8 1.1E-21 3.7E-26 163.7 7.2 171 9-184 192-417 (636)
32 3oja_B Anopheles plasmodium-re 99.8 2.6E-20 8.8E-25 154.3 15.3 79 108-187 248-342 (597)
33 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-20 4.3E-25 156.0 13.1 164 1-182 33-217 (606)
34 3o6n_A APL1; leucine-rich repe 99.8 3.4E-20 1.2E-24 146.1 14.9 78 109-187 243-336 (390)
35 3vq2_A TLR4, TOLL-like recepto 99.8 1.4E-20 4.8E-25 155.8 12.9 178 2-182 352-559 (606)
36 3zyj_A Leucine-rich repeat-con 99.8 1.5E-20 5.1E-25 150.4 12.6 182 2-186 66-272 (440)
37 2o6q_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 138.2 15.0 164 2-186 18-198 (270)
38 2z66_A Variable lymphocyte rec 99.8 5.8E-21 2E-25 145.8 9.8 183 1-185 29-239 (306)
39 3oja_A Leucine-rich immune mol 99.8 1.2E-21 4.2E-26 158.7 6.1 180 2-186 36-231 (487)
40 1p9a_G Platelet glycoprotein I 99.8 2.9E-20 9.8E-25 141.3 13.2 161 1-186 11-189 (290)
41 2id5_A Lingo-1, leucine rich r 99.8 1.9E-20 6.4E-25 151.1 12.6 183 2-185 34-240 (477)
42 2xwt_C Thyrotropin receptor; s 99.8 7.8E-21 2.7E-25 140.4 9.5 167 1-187 32-223 (239)
43 1xku_A Decorin; proteoglycan, 99.8 2.3E-20 7.9E-25 144.0 12.4 178 2-185 33-256 (330)
44 2id5_A Lingo-1, leucine rich r 99.8 1.6E-20 5.3E-25 151.5 11.7 183 1-185 57-264 (477)
45 3t6q_A CD180 antigen; protein- 99.8 2.7E-20 9.3E-25 154.0 12.4 181 1-181 351-559 (606)
46 3oja_B Anopheles plasmodium-re 99.8 3.6E-20 1.2E-24 153.4 12.8 109 2-128 77-185 (597)
47 4g8a_A TOLL-like receptor 4; l 99.8 4.1E-20 1.4E-24 153.0 12.5 161 1-179 53-234 (635)
48 3o6n_A APL1; leucine-rich repe 99.8 7.8E-20 2.7E-24 144.0 13.3 108 2-127 71-178 (390)
49 2z81_A CD282 antigen, TOLL-lik 99.8 3.5E-20 1.2E-24 151.7 11.4 147 1-148 27-182 (549)
50 4ecn_A Leucine-rich repeat pro 99.8 6.2E-21 2.1E-25 163.3 7.0 169 10-184 435-659 (876)
51 2v9t_B SLIT homolog 2 protein 99.8 9.3E-20 3.2E-24 133.2 12.0 117 5-142 16-132 (220)
52 3t6q_A CD180 antigen; protein- 99.8 5.4E-20 1.8E-24 152.3 11.9 160 2-179 35-212 (606)
53 2v9t_B SLIT homolog 2 protein 99.8 9.2E-20 3.1E-24 133.2 11.8 131 1-149 33-163 (220)
54 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.7E-25 144.2 6.7 178 2-182 93-307 (310)
55 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-19 5E-24 147.2 13.1 139 21-180 321-479 (520)
56 1w8a_A SLIT protein; signaling 99.8 8.4E-20 2.9E-24 130.8 10.1 126 3-149 11-137 (192)
57 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 5.8E-24 131.8 11.9 128 3-148 35-163 (220)
58 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.3E-24 132.5 11.1 148 3-179 14-163 (220)
59 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.8E-25 144.2 5.8 169 3-185 67-267 (310)
60 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-19 4E-24 152.1 11.7 146 3-166 28-191 (680)
61 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-21 3.3E-25 145.5 4.6 178 2-185 36-230 (317)
62 1ziw_A TOLL-like receptor 3; i 99.8 3.2E-19 1.1E-23 149.5 14.1 182 2-185 383-600 (680)
63 3e6j_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 130.5 12.9 119 4-144 23-141 (229)
64 2z63_A TOLL-like receptor 4, v 99.8 1.8E-19 6.1E-24 147.9 12.1 161 1-179 29-210 (570)
65 3e6j_A Variable lymphocyte rec 99.8 3E-19 1E-23 131.2 12.0 129 1-148 41-169 (229)
66 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-19 5.2E-24 155.0 11.5 164 1-182 25-217 (844)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.7E-19 9.1E-24 147.2 12.1 142 21-181 350-509 (562)
68 1h6u_A Internalin H; cell adhe 99.8 3E-19 1E-23 136.8 11.5 172 2-185 43-233 (308)
69 2z63_A TOLL-like receptor 4, v 99.8 1.5E-19 5E-24 148.4 9.6 161 2-180 349-529 (570)
70 4ezg_A Putative uncharacterize 99.8 1.5E-19 5.1E-24 129.9 8.4 149 2-183 46-195 (197)
71 2ft3_A Biglycan; proteoglycan, 99.8 9.1E-20 3.1E-24 140.8 7.2 175 1-182 103-307 (332)
72 2z7x_B TOLL-like receptor 1, v 99.8 4.6E-19 1.6E-23 144.3 10.7 103 83-186 341-461 (520)
73 1h6u_A Internalin H; cell adhe 99.8 1.8E-18 6.1E-23 132.4 13.0 167 7-185 26-211 (308)
74 2ell_A Acidic leucine-rich nuc 99.8 1.5E-18 5.1E-23 121.5 11.2 134 2-164 26-164 (168)
75 2z81_A CD282 antigen, TOLL-lik 99.8 2.7E-19 9.2E-24 146.4 8.5 182 1-184 51-266 (549)
76 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 138.2 9.6 128 2-148 41-173 (361)
77 2je0_A Acidic leucine-rich nuc 99.8 9.7E-19 3.3E-23 120.1 9.7 125 2-146 19-148 (149)
78 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.9E-23 131.5 11.4 155 2-185 48-216 (291)
79 2o6s_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 122.3 13.8 126 3-149 10-135 (208)
80 4g8a_A TOLL-like receptor 4; l 99.8 2E-18 6.7E-23 143.0 11.9 158 6-184 37-216 (635)
81 3j0a_A TOLL-like receptor 5; m 99.8 4.3E-18 1.5E-22 146.0 14.2 183 2-185 99-378 (844)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-18 4.9E-23 142.8 10.0 101 85-186 372-490 (562)
83 2xwt_C Thyrotropin receptor; s 99.8 1.1E-18 3.7E-23 128.8 8.4 156 1-179 56-236 (239)
84 2z80_A TOLL-like receptor 2, v 99.8 1.1E-18 3.8E-23 135.7 8.8 175 5-185 36-238 (353)
85 3oja_A Leucine-rich immune mol 99.8 8E-19 2.7E-23 142.2 7.5 170 1-181 59-249 (487)
86 2xot_A Amphoterin-induced prot 99.8 7.1E-18 2.4E-22 131.7 12.6 155 3-179 21-199 (361)
87 3o53_A Protein LRIM1, AGAP0063 99.8 3.3E-19 1.1E-23 136.9 4.6 137 23-179 119-272 (317)
88 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-17 7.8E-22 132.7 15.1 169 2-187 66-251 (457)
89 3bz5_A Internalin-J, INLJ; leu 99.8 2.2E-17 7.5E-22 132.8 14.8 116 1-148 43-158 (457)
90 1m9s_A Internalin B; cell inva 99.7 7.8E-18 2.7E-22 139.5 11.8 157 1-186 44-214 (605)
91 2wfh_A SLIT homolog 2 protein 99.7 1.7E-17 5.7E-22 118.9 11.8 125 3-149 13-137 (193)
92 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.5E-23 146.5 6.7 129 16-166 216-361 (727)
93 1o6v_A Internalin A; bacterial 99.7 1.2E-17 4E-22 134.5 11.2 172 2-186 201-392 (466)
94 4fmz_A Internalin; leucine ric 99.7 2.4E-17 8.2E-22 127.7 11.3 173 2-184 134-326 (347)
95 1xeu_A Internalin C; cellular 99.7 6.3E-18 2.2E-22 126.7 7.6 119 2-149 43-161 (263)
96 3cvr_A Invasion plasmid antige 99.7 6.7E-17 2.3E-21 132.9 13.4 161 2-183 61-244 (571)
97 1w8a_A SLIT protein; signaling 99.7 4.5E-17 1.5E-21 116.5 10.8 103 26-149 10-113 (192)
98 2ca6_A RAN GTPase-activating p 99.7 1E-18 3.6E-23 137.4 1.7 185 1-185 61-319 (386)
99 4fmz_A Internalin; leucine ric 99.7 5.8E-17 2E-21 125.5 11.4 169 2-182 157-346 (347)
100 1h6t_A Internalin B; cell adhe 99.7 9E-17 3.1E-21 122.0 12.0 132 1-160 69-214 (291)
101 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 112.3 12.1 132 3-163 10-141 (177)
102 4ezg_A Putative uncharacterize 99.7 5.7E-17 2E-21 116.3 9.8 124 1-148 67-191 (197)
103 1o6v_A Internalin A; bacterial 99.7 9.5E-17 3.3E-21 129.2 12.0 173 1-185 178-369 (466)
104 1jl5_A Outer protein YOPM; leu 99.7 2.2E-16 7.6E-21 126.9 12.9 115 24-149 131-248 (454)
105 1jl5_A Outer protein YOPM; leu 99.7 3.5E-16 1.2E-20 125.7 13.7 166 2-185 73-253 (454)
106 2ast_B S-phase kinase-associat 99.7 5.1E-18 1.7E-22 130.9 2.8 159 2-179 72-257 (336)
107 3goz_A Leucine-rich repeat-con 99.7 6.5E-18 2.2E-22 132.0 3.2 69 2-70 24-102 (362)
108 3cvr_A Invasion plasmid antige 99.7 5.2E-16 1.8E-20 127.6 14.4 139 25-185 60-223 (571)
109 2ell_A Acidic leucine-rich nuc 99.7 6.3E-17 2.1E-21 113.1 6.7 137 22-187 22-165 (168)
110 1a9n_A U2A', U2A'; complex (nu 99.7 1.4E-16 4.9E-21 112.2 8.4 123 2-148 21-150 (176)
111 1xeu_A Internalin C; cellular 99.7 6.3E-16 2.2E-20 115.8 12.2 153 3-185 22-188 (263)
112 2ca6_A RAN GTPase-activating p 99.7 9.2E-18 3.1E-22 132.0 1.6 183 1-183 33-288 (386)
113 1m9s_A Internalin B; cell inva 99.7 5.6E-16 1.9E-20 128.4 12.2 133 1-161 66-212 (605)
114 4b8c_D Glucose-repressible alc 99.7 5.4E-18 1.8E-22 143.3 -0.0 113 1-135 225-337 (727)
115 3goz_A Leucine-rich repeat-con 99.7 2.5E-17 8.4E-22 128.7 3.3 182 4-185 2-241 (362)
116 2ast_B S-phase kinase-associat 99.7 1.1E-17 3.7E-22 129.1 1.2 179 1-185 94-309 (336)
117 4ay9_X Follicle-stimulating ho 99.7 2.2E-16 7.6E-21 122.7 8.2 180 3-186 12-219 (350)
118 2wfh_A SLIT homolog 2 protein 99.6 1.6E-15 5.4E-20 108.6 11.5 123 26-179 12-136 (193)
119 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5.1E-20 107.0 9.8 113 1-131 29-141 (177)
120 2je0_A Acidic leucine-rich nuc 99.6 2E-16 6.7E-21 108.5 4.9 128 22-177 15-148 (149)
121 1dce_A Protein (RAB geranylger 99.6 9.4E-16 3.2E-20 126.3 9.5 109 25-164 442-551 (567)
122 3g06_A SSPH2 (leucine-rich rep 99.6 1E-14 3.5E-19 121.1 15.6 32 150-182 265-297 (622)
123 1ds9_A Outer arm dynein; leuci 99.6 8.7E-18 3E-22 120.7 -4.5 132 2-164 20-158 (198)
124 3g06_A SSPH2 (leucine-rich rep 99.6 1.8E-14 6E-19 119.8 14.3 142 2-164 42-198 (622)
125 3g39_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 103.4 9.6 54 89-142 53-106 (170)
126 1z7x_W Ribonuclease inhibitor; 99.6 6.5E-17 2.2E-21 129.6 -1.1 94 89-182 283-411 (461)
127 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-16 7.5E-21 126.5 0.7 92 91-182 200-326 (461)
128 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.6E-19 113.3 9.9 60 2-61 32-93 (350)
129 1dce_A Protein (RAB geranylger 99.6 1.4E-15 4.8E-20 125.2 5.2 120 2-144 443-566 (567)
130 3g39_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 101.4 9.8 108 2-130 11-118 (170)
131 1a9n_A U2A', U2A'; complex (nu 99.6 2.4E-15 8.3E-20 105.9 4.9 131 19-180 14-151 (176)
132 2r9u_A Variable lymphocyte rec 99.5 3.4E-14 1.2E-18 100.0 10.2 97 27-144 15-111 (174)
133 2r9u_A Variable lymphocyte rec 99.5 2.9E-14 1E-18 100.3 9.7 105 3-128 15-119 (174)
134 1ds9_A Outer arm dynein; leuci 99.5 7.8E-16 2.7E-20 110.5 -3.9 121 1-144 49-180 (198)
135 2ifg_A High affinity nerve gro 99.4 9.7E-13 3.3E-17 101.9 8.7 104 4-128 12-117 (347)
136 2ifg_A High affinity nerve gro 99.4 1.4E-12 4.6E-17 101.0 7.5 102 27-149 11-114 (347)
137 3un9_A NLR family member X1; l 99.3 1.3E-13 4.3E-18 108.1 -2.7 135 2-149 74-222 (372)
138 3un9_A NLR family member X1; l 99.1 1.2E-12 4.2E-17 102.6 -2.8 135 1-149 102-250 (372)
139 3ogk_B Coronatine-insensitive 99.1 5.5E-11 1.9E-15 97.9 4.3 97 85-182 265-391 (592)
140 3sb4_A Hypothetical leucine ri 99.1 2.4E-09 8.2E-14 82.3 12.2 85 89-184 225-312 (329)
141 3ogk_B Coronatine-insensitive 99.0 6.2E-11 2.1E-15 97.6 2.5 182 1-184 193-422 (592)
142 3sb4_A Hypothetical leucine ri 98.9 1.1E-09 3.6E-14 84.3 6.4 167 1-178 50-283 (329)
143 2p1m_B Transport inhibitor res 98.9 2.3E-11 7.9E-16 100.1 -3.5 37 22-58 103-140 (594)
144 1io0_A Tropomodulin; LRR prote 98.9 5.9E-10 2E-14 78.9 3.3 116 19-148 31-161 (185)
145 2p1m_B Transport inhibitor res 98.7 1.4E-10 4.8E-15 95.5 -5.0 55 1-56 290-346 (594)
146 1io0_A Tropomodulin; LRR prote 98.7 8.6E-10 2.9E-14 78.1 -0.9 113 1-127 37-164 (185)
147 2ra8_A Uncharacterized protein 98.5 1.8E-07 6.2E-12 72.9 7.1 112 18-148 166-289 (362)
148 4fdw_A Leucine rich hypothetic 98.5 1.8E-06 6E-11 68.2 11.3 54 2-57 159-212 (401)
149 3rw6_A Nuclear RNA export fact 98.5 2E-07 6.7E-12 69.6 5.5 66 89-164 169-238 (267)
150 2ra8_A Uncharacterized protein 98.4 3.6E-08 1.2E-12 76.9 1.1 133 2-149 174-318 (362)
151 4fdw_A Leucine rich hypothetic 98.4 2.6E-06 9E-11 67.2 11.0 173 2-182 137-358 (401)
152 3rw6_A Nuclear RNA export fact 98.3 9.3E-07 3.2E-11 65.9 4.8 63 1-65 171-237 (267)
153 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 7.9E-11 59.7 2.6 88 24-125 61-150 (176)
154 3e4g_A ATP synthase subunit S, 98.0 8.2E-07 2.8E-11 62.0 0.0 92 40-149 53-150 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.9 8.4E-06 2.9E-10 57.9 3.2 114 21-148 38-167 (197)
156 1pgv_A TMD-1, tropomodulin TMD 97.7 6.8E-06 2.3E-10 58.4 0.2 113 1-127 42-170 (197)
157 3rfe_A Platelet glycoprotein I 97.2 0.00095 3.2E-08 44.0 5.9 57 4-62 12-69 (130)
158 4h09_A Hypothetical leucine ri 97.0 0.0037 1.3E-07 48.5 9.0 60 87-147 283-342 (379)
159 4gt6_A Cell surface protein; l 97.0 0.0042 1.4E-07 48.5 9.1 109 19-149 260-368 (394)
160 3rfe_A Platelet glycoprotein I 96.9 0.0018 6E-08 42.7 5.6 55 93-149 11-66 (130)
161 4fs7_A Uncharacterized protein 96.7 0.0076 2.6E-07 47.0 8.2 106 19-148 248-353 (394)
162 4fs7_A Uncharacterized protein 96.5 0.068 2.3E-06 41.6 12.6 103 22-148 228-330 (394)
163 4gt6_A Cell surface protein; l 96.4 0.013 4.6E-07 45.6 7.8 106 18-147 282-387 (394)
164 4h09_A Hypothetical leucine ri 96.2 0.018 6.3E-07 44.4 7.8 52 85-138 305-356 (379)
165 2lz0_A Uncharacterized protein 53.5 23 0.00079 21.5 4.3 37 108-145 14-50 (100)
166 2lz0_A Uncharacterized protein 39.3 61 0.0021 19.6 4.6 51 8-59 4-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=6.2e-30 Score=217.30 Aligned_cols=188 Identities=30% Similarity=0.459 Sum_probs=149.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH------
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL------ 75 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l------ 75 (190)
|++|++++|.+++.+|.+++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.. ...+
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~ 570 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFI 570 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTT
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcc
Confidence 556666666666666666666666777777777666666666666777777777777776666665432 1100
Q ss_pred -----------------------------------------------HhhcCCcccccCCCCCCcEEEccCCeecccCCc
Q 039561 76 -----------------------------------------------FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAK 108 (190)
Q Consensus 76 -----------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 108 (190)
..+.+.+|..++.++.++.|++++|+++|.+|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 011233455667788999999999999999999
Q ss_pred cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------------eEEeecccccccCCccccccccc
Q 039561 109 GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGFH 172 (190)
Q Consensus 109 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~~~~l~ 172 (190)
.++.++.|+.|++++|.++|.+|..++.+++|+.||+++|+ ++|+++|+++|.+|+..++.++.
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 99999999999999999999999999999999999999998 89999999999999998999999
Q ss_pred cccccCC-cccCCCCCCCC
Q 039561 173 QSRFAGS-ELCGAPFPKCL 190 (190)
Q Consensus 173 ~~~~~~n-~l~~~~~~~c~ 190 (190)
...+.|| .+||.|++.|.
T Consensus 731 ~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 731 PAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp GGGGCSCTEEESTTSCCCC
T ss_pred HHHhcCCchhcCCCCcCCC
Confidence 9999999 99999988884
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.3e-27 Score=180.77 Aligned_cols=187 Identities=29% Similarity=0.447 Sum_probs=155.1
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHH-HHHhh-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLL-ALFMM- 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~-~l~~~- 78 (190)
.|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.. +. .|..+
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~ 180 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMT 180 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEE
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEE
Confidence 3788889999998878888888999999999999988888888888889999999999888778876653 33 33222
Q ss_pred ------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561 79 ------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--- 149 (190)
Q Consensus 79 ------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--- 149 (190)
.+..|..+..+. |++|++++|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|+.|++++|.
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 334556666666 88899999988878888888889999999999988865554 7788889999999887
Q ss_pred -------------eEEeecccccccCCccccccccccccccCC-cccCCCCCCCC
Q 039561 150 -------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAPFPKCL 190 (190)
Q Consensus 150 -------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~ 190 (190)
+|++++|.++|.+|+...+.+++.+.+.+| .+||.|.+.|.
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCCC
Confidence 899999999999999888999999999999 79999988884
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=8.8e-26 Score=191.85 Aligned_cols=182 Identities=30% Similarity=0.451 Sum_probs=128.5
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|.++.. +++|..+
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~ 522 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLS 522 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECC
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECC
Confidence 455555555555555555666666666666666666556666666666666666666666666665542 4444222
Q ss_pred ----cCCcccccCCCCCCcEEEccCCeecccCCccC--------------------------------------------
Q 039561 79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-------------------------------------------- 110 (190)
Q Consensus 79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~-------------------------------------------- 110 (190)
.+.+|..++.+++|++|++++|.+.|.+|..+
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 33456667777788888888877776665433
Q ss_pred --------------------------CCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------
Q 039561 111 --------------------------TNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------- 149 (190)
Q Consensus 111 --------------------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------- 149 (190)
+.++.|+.|++++|.++|.+|..++.+++|+.|++++|+
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 234567788888888888888888888888888888887
Q ss_pred -eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561 150 -YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA 184 (190)
Q Consensus 150 -~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~ 184 (190)
+||+++|+++|.+|+.+ .+..++.+++++|.++|.
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 79999999999999887 788899999999987754
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.7e-25 Score=171.91 Aligned_cols=181 Identities=25% Similarity=0.360 Sum_probs=160.9
Q ss_pred CCcceeccC-CccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh-
Q 039561 1 MLQQGLKIQ-HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM- 78 (190)
Q Consensus 1 ~L~~L~l~~-n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~- 78 (190)
.|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.. +++|..+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence 378999995 9999999999999999999999999999889999999999999999999999888887764 6666433
Q ss_pred ------cCCcccccCCCC-CCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--
Q 039561 79 ------KGKAFEYSTNLN-VLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-- 149 (190)
Q Consensus 79 ------~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-- 149 (190)
.+.+|..++.++ .|++|++++|.+.+.+|..+..+. |+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 335677788887 899999999999988898888887 9999999999998889999999999999999996
Q ss_pred -------------eEEeecccccccCCccc-cccccccccccCCcccC
Q 039561 150 -------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCG 183 (190)
Q Consensus 150 -------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~ 183 (190)
+|++++|.++|.+|..+ .+.+++.+++++|.+++
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 89999999999999987 78999999999998774
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=7.9e-23 Score=154.76 Aligned_cols=178 Identities=21% Similarity=0.186 Sum_probs=125.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-ccCCCcHHHHHHHHHHHhh-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-FIRDVPKWIKKSLLALFMM- 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~~l~~~- 78 (190)
.|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....|..+.. +++|..+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC-CcCCCEEE
Confidence 36788999999988666778889999999999999986667788888999999999997 55444554432 4444222
Q ss_pred ------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561 79 ------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--- 149 (190)
Q Consensus 79 ------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--- 149 (190)
....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 22224456667777777777777775444557777777777777777775545567777777777777775
Q ss_pred -------------eEEeecccccccCCccc-cccccccccccCC
Q 039561 150 -------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS 179 (190)
Q Consensus 150 -------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n 179 (190)
+|++++|.+++..|..+ .+.+++.+++++|
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 67777777774333333 5677777777777
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=9.8e-24 Score=163.06 Aligned_cols=173 Identities=19% Similarity=0.219 Sum_probs=122.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
+++|++++|.++ .+|+.++.+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.. +++|..+
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~ 158 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIR 158 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECC
Confidence 466777777777 36777777778888888888777 67777777777888888877766 56665543 4444222
Q ss_pred ----cCCcccccC---------CCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeC
Q 039561 79 ----KGKAFEYST---------NLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDF 145 (190)
Q Consensus 79 ----~~~~~~~~~---------~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l 145 (190)
.+.+|..+. .+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 233444433 3777778888777777 67777777777888888877777 46666777777777777
Q ss_pred CCCc----------------eEEeecccccccCCccc-cccccccccccCCc
Q 039561 146 SANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSE 180 (190)
Q Consensus 146 ~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~ 180 (190)
++|. +|++++|.+.+.+|..+ .+.+++.+++++|.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 7765 67777777777777766 67777777777773
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-22 Score=151.49 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
+++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------ 104 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD------------ 104 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc------------
Confidence 56677777777776566677777777777777777755555566777777777777776543333333
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 105 ------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 105 ------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 36777777777777774444456677777777777777775545567777777766655554
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=9.7e-23 Score=157.46 Aligned_cols=179 Identities=19% Similarity=0.220 Sum_probs=153.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHH--------HH
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK--------SL 72 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~--------~~ 72 (190)
.|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.. .+
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 3788999999999 68989999999999999999999 88988999999999999998888888875421 13
Q ss_pred HHHHhh------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCC
Q 039561 73 LALFMM------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFS 146 (190)
Q Consensus 73 ~~l~~~------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~ 146 (190)
++|..+ -..+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 444322 1256777888999999999999998 577789999999999999999999999999999999999999
Q ss_pred CCc----------------eEEeecccccccCCccc-cccccccccccCCccc
Q 039561 147 ANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 147 ~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~ 182 (190)
+|. +|++++|.+.+.+|+.+ .+..+..+.+..+.+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 986 89999999999999988 7888888888777444
No 9
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=4.1e-22 Score=150.18 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=119.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM-- 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~-- 78 (190)
+|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+.. +++|..+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEEC
Confidence 3788999999999866668899999999999999998656667888999999999999987655554443 3333222
Q ss_pred -----cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCC----EEeCCCC
Q 039561 79 -----KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLE----SIDFSAN 148 (190)
Q Consensus 79 -----~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~l~l~~N 148 (190)
....+..++.+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++..+..+..+++|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 11112235556666777776666654 2466666666777777777766655455555444444 5666666
Q ss_pred c---------------eEEeecccccccCCccc-cccccccccccCCc
Q 039561 149 H---------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSE 180 (190)
Q Consensus 149 ~---------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~ 180 (190)
. +|++++|.+++..+..+ .+.+++.+.+++|.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 5 56777777763323222 46667777777773
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.2e-21 Score=147.37 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=117.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
+++|++++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------- 105 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF------------- 105 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT-------------
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc-------------
Confidence 5677788888777555577778888888888888774333445667788888888887654333333
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 106 -----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 106 -----DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp -----TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 337788888888888876656667788888888888888875555557778888888888875
Q ss_pred ----eEEeecccccccCCc-cc-cccccccccccCCc
Q 039561 150 ----YLNLSNNNLTGEIPS-GI-QLQGFHQSRFAGSE 180 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~-~~-~~~~l~~~~~~~n~ 180 (190)
+|++++|.+++ +|. .+ .+.+++.+.+++|.
T Consensus 181 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCC
Confidence 78889999984 444 34 67888889898883
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=6.4e-23 Score=171.08 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=147.5
Q ss_pred CCcceeccCCccccC-----------------CCcccC--CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-c
Q 039561 1 MLQQGLKIQHKFSRS-----------------FPTSTG--ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-F 60 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~ 60 (190)
.|++|++++|.+++. +|+.++ ++++|++|++++|.+.+.+|..+..+++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 478999999999996 899999 99999999999999999999999999999999999998 8
Q ss_pred cC-CCcHHHHHHH------HHHHhhc------CCccc--ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCc
Q 039561 61 IR-DVPKWIKKSL------LALFMMK------GKAFE--YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS 125 (190)
Q Consensus 61 ~~-~~p~~~~~~~------~~l~~~~------~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 125 (190)
.+ .+|..+.. + ++|..+. ..+|. .++.+++|++|++++|.+.|.+| .++.+++|+.|++++|.
T Consensus 287 ~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 287 SGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred ccccchHHHHh-hhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 87 78887764 4 4443321 15666 78888889999999999888888 78888888888888888
Q ss_pred ceeccCccccCCCC-CCEEeCCCCc-----------------eEEeecccccccCCcccc--------ccccccccccCC
Q 039561 126 FSRTIPESIGSMKS-LESIDFSANH-----------------YLNLSNNNLTGEIPSGIQ--------LQGFHQSRFAGS 179 (190)
Q Consensus 126 l~~~~p~~l~~l~~-L~~l~l~~N~-----------------~l~l~~N~l~g~~p~~~~--------~~~l~~~~~~~n 179 (190)
++ .+|..+..+++ |+.|++++|. ++++++|.+++.+|..+. ..+++.+.+++|
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 88 77888888888 8888888885 678888888877666442 346777777777
Q ss_pred cccCCC
Q 039561 180 ELCGAP 185 (190)
Q Consensus 180 ~l~~~~ 185 (190)
.+...|
T Consensus 444 ~l~~lp 449 (636)
T 4eco_A 444 QISKFP 449 (636)
T ss_dssp CCCSCC
T ss_pred ccCcCC
Confidence 666555
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=7.2e-22 Score=149.49 Aligned_cols=184 Identities=20% Similarity=0.189 Sum_probs=141.8
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCc-ccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNH-LSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM- 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~- 78 (190)
.|++|++++|.+++..|..+..+++|++|++++|. ++...+..+..+++|++|++++|.+.+..|..+. .+++|..+
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEE
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEE
Confidence 37889999999998778889999999999999997 7755577788899999999999998766565544 25555333
Q ss_pred ------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561 79 ------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--- 149 (190)
Q Consensus 79 ------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--- 149 (190)
....+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 12223457789999999999999986656679999999999999999998889999999999999999997
Q ss_pred -------------eEEeecccccccCCccccccccccccccCC-cccCCC
Q 039561 150 -------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAP 185 (190)
Q Consensus 150 -------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n-~l~~~~ 185 (190)
++++++|++.+..+.......++......+ ..|..|
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 799999999865444322233444444444 334443
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4.5e-22 Score=151.98 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=124.3
Q ss_pred CcceeccCCccccC--CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhh
Q 039561 2 LQQGLKIQHKFSRS--FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMM 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~--~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~ 78 (190)
|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+. .+++|..+
T Consensus 54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L 131 (306)
T 2z66_A 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYL 131 (306)
T ss_dssp CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEE
T ss_pred CCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhh-hccCCCEE
Confidence 56666666666532 2344455666666666666666 455555666666666666666544322 1221 13333222
Q ss_pred -------cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-
Q 039561 79 -------KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH- 149 (190)
Q Consensus 79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~- 149 (190)
....+..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 11233445668899999999999875 578888889999999999999987778888889999999999986
Q ss_pred ---------------eEEeecccccccCCccc-cc-cccccccccCCccc
Q 039561 150 ---------------YLNLSNNNLTGEIPSGI-QL-QGFHQSRFAGSELC 182 (190)
Q Consensus 150 ---------------~l~l~~N~l~g~~p~~~-~~-~~l~~~~~~~n~l~ 182 (190)
+||+++|.+++..|..+ .+ .+++.+++++|.+.
T Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 79999999998888776 45 58999999999553
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=4.3e-22 Score=159.57 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=47.6
Q ss_pred CcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------------eEEeec
Q 039561 92 LRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSN 155 (190)
Q Consensus 92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------------~l~l~~ 155 (190)
++.|++++|.+.+..|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|. +|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 4444444444443444445555555555555555554445555555555555555554 455555
Q ss_pred ccccccCCccc-cccccccccccCCcccCCC
Q 039561 156 NNLTGEIPSGI-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 156 N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~ 185 (190)
|.+++..|..+ .+.+++.+++++|.+.+.|
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhhccccccccEEECCCCccccCC
Confidence 55554444443 4455555555555444443
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.7e-22 Score=143.58 Aligned_cols=147 Identities=18% Similarity=0.100 Sum_probs=123.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------ 97 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD------------ 97 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc------------
Confidence 67899999999976566678999999999999999855455577889999999999997754333333
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------eEE
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------YLN 152 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------~l~ 152 (190)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|. +++
T Consensus 98 ------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~ 171 (208)
T 2o6s_A 98 ------KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 171 (208)
T ss_dssp ------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHH
T ss_pred ------CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHH
Confidence 38999999999999986656668899999999999999996666668999999999999997 788
Q ss_pred eecccccccCCccc
Q 039561 153 LSNNNLTGEIPSGI 166 (190)
Q Consensus 153 l~~N~l~g~~p~~~ 166 (190)
++.|.++|.+|+.+
T Consensus 172 ~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 172 EWINKHSGVVRNSA 185 (208)
T ss_dssp HHHHHCTTTBBCTT
T ss_pred HHHHhCCceeeccC
Confidence 99999999999876
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.2e-21 Score=143.55 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=136.7
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
.++++++++.++. +|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------- 81 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----------- 81 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-----------
Confidence 3568899999986 776665 68999999999999777778999999999999999988765554544
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 82 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 82 -------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp -------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 8999999999999996666788999999999999999996666668899999999999997
Q ss_pred ----eEEeecccccccCCccc-cccccccccccCCccc
Q 039561 150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~ 182 (190)
+|++++|.+++..|..+ .+.+++.+.+++|.+.
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 89999999995555455 7889999999999554
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.7e-21 Score=148.16 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=100.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
+++|++++|.+++..+..+..+++|++|++++|.++ .++.. ..+++|++|++++|.+. .+|.
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~l~-~l~~--------------- 94 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPL--------------- 94 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSCCS-SCCC---------------
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCcCC-cCch---------------
Confidence 344555555555444444555555555555555555 22221 34555555555555543 2333
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
.+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 95 ---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 95 ---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp ---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred ---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 33447788888888888875555677788888888888888875555566777888888888776
Q ss_pred ----eEEeecccccccCCccc-cccccccccccCC
Q 039561 150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS 179 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n 179 (190)
+|++++|.++ .+|..+ ....++.+.+.+|
T Consensus 172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 6888888887 677665 6667888888888
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2e-21 Score=146.26 Aligned_cols=162 Identities=20% Similarity=0.127 Sum_probs=107.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.. +++|..+
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~ 141 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLA 141 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred CcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-CCCCCEEECC
Confidence 6778888888776 3 36778888888888888888555555677788888888888876544443332 3333222
Q ss_pred ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----
Q 039561 79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----- 149 (190)
Q Consensus 79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----- 149 (190)
....+..++.+++|++|++++|++++..+..++.+++|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 11112234556777777777777775555556677777777777777776555566777777777777775
Q ss_pred ----eEEeecccccccCCccc
Q 039561 150 ----YLNLSNNNLTGEIPSGI 166 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~ 166 (190)
++++..|.++|.+|..+
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTT
T ss_pred cHHHHHHHHHHhCCCcccCcc
Confidence 56667777777777664
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=8.4e-21 Score=142.89 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=117.8
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.++. ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+..+..
T Consensus 42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 107 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDK---------- 107 (272)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcC----------
Confidence 36789999999885 33 68899999999999999984 44 6788999999999999987655544433
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------- 149 (190)
+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 108 --------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 108 --------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp --------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 6677777777777765555556677777777777777775555556677777777777775
Q ss_pred -----eEEeecccccccCCccc-cccccccccccCCcc
Q 039561 150 -----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSEL 181 (190)
Q Consensus 150 -----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l 181 (190)
+|++++|.+++..|..+ .+.+++.+.+++|.+
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 67788888886555544 677888888888843
No 20
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=2.8e-22 Score=153.82 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=28.4
Q ss_pred CcceeccCCccccCCCccc--CCCCCCcEEEcccCcccCcCCccccCC-----CCccEEeccCCcccC
Q 039561 2 LQQGLKIQHKFSRSFPTST--GALSSLESLHLHRNHLSGAIPLSLQNG-----THFEVLDLRENAFIR 62 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l--~~l~~L~~l~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~ 62 (190)
|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 4445555555554444443 4455555555555555432 4333333 445555555554443
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.6e-21 Score=147.02 Aligned_cols=180 Identities=19% Similarity=0.256 Sum_probs=116.3
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHH------------
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK------------ 69 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~------------ 69 (190)
+++|++++|.+++..+..++.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+.
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE 132 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSC
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCc
Confidence 566777777777755556777777777777777777555667777777777777777654 2332211
Q ss_pred ---------HHHHHHHhhc---------CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC
Q 039561 70 ---------KSLLALFMMK---------GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131 (190)
Q Consensus 70 ---------~~~~~l~~~~---------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 131 (190)
..+++|..+. +..+..+..+++|++|++++|.+. .+|..+. ++|+.|++++|.+++..|
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCH
Confidence 1122221110 122344555666777777776665 4454433 567777777777776666
Q ss_pred ccccCCCCCCEEeCCCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 132 ESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 132 ~~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
..+..+++|+.|++++|. +|++++|.++ .+|..+ .+.+++.+.+++|.+++.|.
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 777777778888887775 6778888877 677665 67777777777777766553
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.9e-21 Score=146.50 Aligned_cols=161 Identities=20% Similarity=0.138 Sum_probs=121.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|..+
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~ 132 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVA 132 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECC
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc-cCCCCCEEECc
Confidence 67888888888876666788888899999999888866667788888888888888887654433332 24444332
Q ss_pred ----cC-CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCc----EEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 79 ----KG-KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQ----TLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 79 ----~~-~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.. .+|..+..+++|++|++++|++++..+..+..+..|+ .|++++|.+++..+..+ ...+|+.|++++|.
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQ 211 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSC
T ss_pred CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCc
Confidence 11 2466778899999999999999876666776666666 89999999985444444 44589999999997
Q ss_pred ----------------eEEeecccccccCCc
Q 039561 150 ----------------YLNLSNNNLTGEIPS 164 (190)
Q Consensus 150 ----------------~l~l~~N~l~g~~p~ 164 (190)
++++++|++++..|.
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred eeecCHhHhcccccccEEEccCCcccccCCc
Confidence 799999999977664
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.7e-21 Score=156.15 Aligned_cols=100 Identities=20% Similarity=0.164 Sum_probs=87.9
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------- 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------- 149 (190)
+..++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 4567789999999999999998878899999999999999999998778899999999999999997
Q ss_pred ---eEEeecccccccCCccc-cccccccccccCCccc
Q 039561 150 ---YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ---~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~ 182 (190)
+|++++|.+++..+..+ .+.+++.+++++|.+.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 89999999995434343 7899999999999554
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.6e-21 Score=166.91 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=143.6
Q ss_pred CCcceeccCCcccc-----------------CCCcccC--CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-c
Q 039561 1 MLQQGLKIQHKFSR-----------------SFPTSTG--ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-F 60 (190)
Q Consensus 1 ~L~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~ 60 (190)
.|++|++++|.+++ .+|+.++ ++++|++|++++|.+.+.+|..+..+++|+.|++++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 47899999999999 3898888 99999999999999998999999999999999999998 8
Q ss_pred cC-CCcHHHHHHHH-------HHHhhc------CCccc--ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccC
Q 039561 61 IR-DVPKWIKKSLL-------ALFMMK------GKAFE--YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQN 124 (190)
Q Consensus 61 ~~-~~p~~~~~~~~-------~l~~~~------~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 124 (190)
.+ .+|..+.. +. +|..+. ..+|. .++.+++|+.|++++|.+. .+| .++.+++|+.|++++|
T Consensus 529 sg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 529 SAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred ccccchHHHHh-hhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 87 78887764 55 453321 15666 7888889999999999988 777 7888888999999999
Q ss_pred cceeccCccccCCCC-CCEEeCCCCc-----------------eEEeecccccccCCccc------cccccccccccCCc
Q 039561 125 SFSRTIPESIGSMKS-LESIDFSANH-----------------YLNLSNNNLTGEIPSGI------QLQGFHQSRFAGSE 180 (190)
Q Consensus 125 ~l~~~~p~~l~~l~~-L~~l~l~~N~-----------------~l~l~~N~l~g~~p~~~------~~~~l~~~~~~~n~ 180 (190)
.++ .+|..+..+++ |+.|++++|. .|++++|.++|.+|... ...+++.+.+++|.
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 888 78888888888 8888888885 57888888877665422 22355566666665
Q ss_pred ccCCC
Q 039561 181 LCGAP 185 (190)
Q Consensus 181 l~~~~ 185 (190)
+...|
T Consensus 685 L~~lp 689 (876)
T 4ecn_A 685 IQKFP 689 (876)
T ss_dssp CCSCC
T ss_pred CCccC
Confidence 55444
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=152.81 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=144.3
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK- 79 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~- 79 (190)
.|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+ +|......+++|..+.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEEC
Confidence 37889999999998656689999999999999999996667788899999999999999775 5544222355554331
Q ss_pred -----CCccc--ccCCCCCCcEEEccCC-eecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--
Q 039561 80 -----GKAFE--YSTNLNVLRVIELSKN-NFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-- 149 (190)
Q Consensus 80 -----~~~~~--~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-- 149 (190)
..++. .+..+++|++|++++| .+.+..+..++.+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 12333 5778899999999998 4665556788899999999999999998888899999999999999886
Q ss_pred --------------eEEeecccccccCCc-------------------------------cc-cccccccccccCCcccC
Q 039561 150 --------------YLNLSNNNLTGEIPS-------------------------------GI-QLQGFHQSRFAGSELCG 183 (190)
Q Consensus 150 --------------~l~l~~N~l~g~~p~-------------------------------~~-~~~~l~~~~~~~n~l~~ 183 (190)
++++++|.+++..+. .+ .+.+++.+++++|.++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 788888888753322 22 45678888888887776
Q ss_pred CCC
Q 039561 184 APF 186 (190)
Q Consensus 184 ~~~ 186 (190)
.|.
T Consensus 292 i~~ 294 (353)
T 2z80_A 292 VPD 294 (353)
T ss_dssp CCT
T ss_pred cCH
Confidence 663
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1.8e-21 Score=149.33 Aligned_cols=180 Identities=22% Similarity=0.330 Sum_probs=115.2
Q ss_pred CcceeccCCccc-cCCCcccC-------CCCCCcEEEcccCcccCcCCccc--cCCCCccEEeccCCcccCCCcHHHHHH
Q 039561 2 LQQGLKIQHKFS-RSFPTSTG-------ALSSLESLHLHRNHLSGAIPLSL--QNGTHFEVLDLRENAFIRDVPKWIKKS 71 (190)
Q Consensus 2 L~~L~l~~n~l~-~~~p~~l~-------~l~~L~~l~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p~~~~~~ 71 (190)
|++|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~- 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE- 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH-
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH-
Confidence 467888999884 44665554 78999999999999998888876 7899999999999998876 776654
Q ss_pred H-----HHHHhh-------cCCcccccCCCCCCcEEEccCCeeccc--CCccC--CCCCCCcEEEcccCccee--ccC-c
Q 039561 72 L-----LALFMM-------KGKAFEYSTNLNVLRVIELSKNNFLGE--IAKGV--TNPGASQTLNLSQNSFSR--TIP-E 132 (190)
Q Consensus 72 ~-----~~l~~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~ 132 (190)
+ ++|..+ .+..+..++.+++|++|++++|++.+. ++..+ +.+++|++|++++|.+++ .++ .
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 3 333221 122234555566666666666665433 22222 555666666666666652 111 2
Q ss_pred cccCCCCCCEEeCCCCc-----------------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 133 SIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 133 ~l~~l~~L~~l~l~~N~-----------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
.+..+++|+.|++++|. +|++++|.|+ .+|..+. .+++.+++++|.+.+.|
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSCC
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCCh
Confidence 23455666666666664 5666666666 5665544 56666666666666554
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=6.5e-21 Score=152.99 Aligned_cols=182 Identities=16% Similarity=0.112 Sum_probs=131.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
+++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..+. .+++|..+.
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~ 155 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE-YLSKLRELWLR 155 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS-SCTTCCEEECC
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc-ccCCCCEEECC
Confidence 67899999999987788899999999999999999866678888899999999999997654433333 234442221
Q ss_pred C----Cc-ccccCCCCCCcEEEccCC-eecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561 80 G----KA-FEYSTNLNVLRVIELSKN-NFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---- 149 (190)
Q Consensus 80 ~----~~-~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---- 149 (190)
+ .+ +..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCccc
Confidence 1 11 224556677777777763 343222335677778888888888877 344 46777788888888886
Q ss_pred ------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
+|++++|.+++..|..+ .+.+|+.+++++|.+.+.|.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 78888888886666666 67888889999998877663
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=5.6e-21 Score=153.36 Aligned_cols=176 Identities=19% Similarity=0.131 Sum_probs=143.4
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+. .+++|..+.-
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l 178 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-RVPSLMRLDL 178 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEEC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh-cCCcccEEeC
Confidence 378999999999997778899999999999999999955556688899999999999997643333332 3555533321
Q ss_pred -------Cc-ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561 81 -------KA-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--- 149 (190)
Q Consensus 81 -------~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--- 149 (190)
.+ +..+..+++|++|++++|++. .+| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 12 235778999999999999998 455 48889999999999999998888999999999999999997
Q ss_pred -------------eEEeecccccccCCccc-cccccccccccCC
Q 039561 150 -------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS 179 (190)
Q Consensus 150 -------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n 179 (190)
+|++++|.+++..+..+ .+.+++.+.+++|
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 89999999995444444 6889999999999
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=153.32 Aligned_cols=175 Identities=20% Similarity=0.141 Sum_probs=112.7
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
|++|++++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+. .+++|..+.
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~ 168 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLG 168 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCC
Confidence 44455555555543334455555555555555555533333455555555555555554432222222 233332221
Q ss_pred -----CCc-ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561 80 -----GKA-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---- 149 (190)
Q Consensus 80 -----~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---- 149 (190)
..+ +..+..+++|++|++++|.+. .+|. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 111 235667888888889888887 5564 7788899999999999987778889999999999999886
Q ss_pred ------------eEEeecccccccCCccc-cccccccccccCC
Q 039561 150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS 179 (190)
Q Consensus 150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n 179 (190)
+|++++|.+++..+..+ .+.+++.+.+++|
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 78999999984444444 6788999999998
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.9e-21 Score=149.17 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=123.7
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHh----
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM---- 77 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~---- 77 (190)
|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+...++.|..
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~ 134 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNR 134 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSC
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCc
Confidence 678888888888866678888999999999999988666778888889999999988865 455433211222211
Q ss_pred hcCCcccccCCCCCCcEEEccCCeecc--cCCccCCCC--------------------CCCcEEEcccCcceeccCcccc
Q 039561 78 MKGKAFEYSTNLNVLRVIELSKNNFLG--EIAKGVTNP--------------------GASQTLNLSQNSFSRTIPESIG 135 (190)
Q Consensus 78 ~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l--------------------~~L~~L~l~~n~l~~~~p~~l~ 135 (190)
+....+..+..+++|+.|++++|.+.. ..+..+..+ +.|+.|++++|.+++..+..+.
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~ 214 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL 214 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc
Confidence 111122345667777777777777642 333333332 3566666666666655556677
Q ss_pred CCCCCCEEeCCCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 136 SMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 136 ~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
.+++|+.|++++|. +|++++|.++ .+|..+ .+.+++.+.+++|.+.+.|.
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 77777777777775 6778888887 677765 67777788888777666553
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=1.1e-21 Score=163.72 Aligned_cols=171 Identities=16% Similarity=0.251 Sum_probs=129.4
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcccCc-----------------CCcccc--CCCCccEEeccCCcccCCCcHHHH
Q 039561 9 QHKFSRSFPTSTGALSSLESLHLHRNHLSGA-----------------IPLSLQ--NGTHFEVLDLRENAFIRDVPKWIK 69 (190)
Q Consensus 9 ~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~ 69 (190)
+|++++ +|+.++++++|++|++++|.+++. +|..+. .+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 346677 898999999999999999999964 899988 999999999999999999998776
Q ss_pred HHHHHHHhh--------cC-CcccccCCC------CCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccCcceeccCc
Q 039561 70 KSLLALFMM--------KG-KAFEYSTNL------NVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPE 132 (190)
Q Consensus 70 ~~~~~l~~~--------~~-~~~~~~~~~------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~ 132 (190)
. +++|..+ .+ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|++++|.++|.+|
T Consensus 271 ~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 A-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp T-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred c-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 4 4444322 12 344445444 77777888777777 6777 77777888888888888877777
Q ss_pred cccCCCCCCEEeCCCCc----------------eEEeecccccccCCcccc---ccccccccccCCcccCC
Q 039561 133 SIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQ---LQGFHQSRFAGSELCGA 184 (190)
Q Consensus 133 ~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~---~~~l~~~~~~~n~l~~~ 184 (190)
.+..+++|+.|++++|. +|++++|.++ .+|+.+. +.+++.+.+++|.+++.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 77777778877777775 5777777777 6777652 23677777777766653
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.6e-20 Score=154.33 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=61.1
Q ss_pred ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCccc-ccccc
Q 039561 108 KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI-QLQGF 171 (190)
Q Consensus 108 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~-~~~~l 171 (190)
.+++.++.|+.|++++|.+++..|..+..+++|+.|++++|. +|++++|.++ .+|..+ .+.+|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 345667788888888888887778888888888888888886 7888888888 677665 67888
Q ss_pred ccccccCCcccCCCCC
Q 039561 172 HQSRFAGSELCGAPFP 187 (190)
Q Consensus 172 ~~~~~~~n~l~~~~~~ 187 (190)
+.+++++|.+.+.|.+
T Consensus 327 ~~L~L~~N~l~~~~~~ 342 (597)
T 3oja_B 327 ENLYLDHNSIVTLKLS 342 (597)
T ss_dssp SEEECCSSCCCCCCCC
T ss_pred CEEECCCCCCCCcChh
Confidence 8888888877766644
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.3e-20 Score=156.02 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=138.2
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+..
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~---------- 102 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG---------- 102 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT----------
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC----------
Confidence 3688999999999877778999999999999999999666778889999999999999987766665544
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~---------- 149 (190)
+++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|..++.+++|++|++++|.
T Consensus 103 --------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 103 --------LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp --------CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred --------cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 9999999999999986666789999999999999999985 568899999999999999986
Q ss_pred ----------eEEeecccccccCCccccccccccccccCCccc
Q 039561 150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~ 182 (190)
++++++|.+++..+..+...+++.+.+++|.+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence 489999999855555555558888888888553
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=3.4e-20 Score=146.08 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=59.9
Q ss_pred cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCccc-cccccc
Q 039561 109 GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI-QLQGFH 172 (190)
Q Consensus 109 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~-~~~~l~ 172 (190)
++..+++|+.|++++|.+++..|..+..+++|+.|++++|. +|++++|.++ .+|..+ .+.+++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 35556778888888888887777788888888888888886 7888888887 566655 678888
Q ss_pred cccccCCcccCCCCC
Q 039561 173 QSRFAGSELCGAPFP 187 (190)
Q Consensus 173 ~~~~~~n~l~~~~~~ 187 (190)
.+++++|.+...+..
T Consensus 322 ~L~L~~N~i~~~~~~ 336 (390)
T 3o6n_A 322 NLYLDHNSIVTLKLS 336 (390)
T ss_dssp EEECCSSCCCCCCCC
T ss_pred EEECCCCccceeCch
Confidence 888888877766543
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.4e-20 Score=155.78 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=127.0
Q ss_pred CcceeccCCccccC--CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhh
Q 039561 2 LQQGLKIQHKFSRS--FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMM 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~--~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~ 78 (190)
|++|++++|.+++. +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..| ..+. .+++|..+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhh-ccccCCEE
Confidence 56677777776654 2556666677777777777766 455566666777777777776665544 2222 23343222
Q ss_pred -------cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-
Q 039561 79 -------KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH- 149 (190)
Q Consensus 79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~- 149 (190)
.+..+..+..+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 22234556668889999999998886 367788888999999999999887778888888899999998887
Q ss_pred ---------------eEEeecccccccCCccc-ccc-ccccccccCC-ccc
Q 039561 150 ---------------YLNLSNNNLTGEIPSGI-QLQ-GFHQSRFAGS-ELC 182 (190)
Q Consensus 150 ---------------~l~l~~N~l~g~~p~~~-~~~-~l~~~~~~~n-~l~ 182 (190)
+||+++|.++ .+|+.+ .+. +++.+++++| ..|
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 7899999998 777766 554 5889999999 444
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=150.42 Aligned_cols=182 Identities=18% Similarity=0.139 Sum_probs=128.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
++.|++++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+.. +++|..+.
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLR 144 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS-CSSCCEEECC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc-cccCceeeCC
Confidence 678999999999877788999999999999999999666678889999999999999977543333332 33332221
Q ss_pred C-----CcccccCCCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561 80 G-----KAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---- 149 (190)
Q Consensus 80 ~-----~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---- 149 (190)
+ ..+..+..+++|++|++++|+ +....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 1 112245556666667666633 33222335666777777777777776 445 36667777777777775
Q ss_pred ------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
+|++++|.+++..|..+ .+.+|+.+++++|.+.+.|.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 67888888876656555 67888888888887776663
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.5e-20 Score=138.24 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=136.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
.++++++++.++. +|..+. +++++|++++|.++...+..|..+++|++|++++|.+.. +|...
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~------------- 80 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGI------------- 80 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTT-------------
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhh-------------
Confidence 4678999999986 776554 689999999999996555688899999999999999764 44322
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 81 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 81 ----FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp ----TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ----hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 2348999999999999986656678899999999999999997777788999999999999996
Q ss_pred ----eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
+|++++|.+++..|..+ .+.+++.+++++|.+.+.|.
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 89999999995444444 68999999999998887764
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=5.8e-21 Score=145.82 Aligned_cols=183 Identities=19% Similarity=0.141 Sum_probs=143.5
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCc--CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGA--IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~ 78 (190)
.|++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.. +|..+. .+++|..+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~-~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcC-CCCCCCEE
Confidence 378899999999974444578999999999999999822 25666778999999999999763 454333 24444333
Q ss_pred c--C----Ccc--cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc
Q 039561 79 K--G----KAF--EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 79 ~--~----~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~ 149 (190)
. + ..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 1 1 122 467788899999999999987778888899999999999999986 578889999999999999997
Q ss_pred ----------------eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561 150 ----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.+++..+..+ .+.+++.+++++|.+.+.+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 79999999985444444 6889999999999777654
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.2e-21 Score=158.69 Aligned_cols=180 Identities=18% Similarity=0.115 Sum_probs=134.1
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+. ..+..|..-...
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~ 110 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNN 110 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCc
Confidence 6889999999999777889999999999999999985554 88899999999999997653221 112111111111
Q ss_pred ccc-ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcccc-CCCCCCEEeCCCCc----------
Q 039561 82 AFE-YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG-SMKSLESIDFSANH---------- 149 (190)
Q Consensus 82 ~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~N~---------- 149 (190)
+.. ....+++|+.|++++|.+++..|..++.++.|+.|++++|.+++..|..+. .+++|+.|++++|.
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l 190 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccC
Confidence 111 112357788888888888877777788888888888888888877777765 67888888888886
Q ss_pred ----eEEeecccccccCCccccccccccccccCCcccCCCC
Q 039561 150 ----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~ 186 (190)
+|++++|.+++..|....+.+++.+++++|.+++.|.
T Consensus 191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch
Confidence 7888888888654443377888888888887776653
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2.9e-20 Score=141.31 Aligned_cols=161 Identities=22% Similarity=0.245 Sum_probs=138.6
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++++++++++.++. +|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+.+..+.
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 73 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------------- 73 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------------
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--------------
Confidence 36789999999986 776664 7899999999999976778899999999999999997653221
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------- 149 (190)
+.+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 74 ------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 74 ------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp ------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 23889999999999998 788889999999999999999997666789999999999999997
Q ss_pred -----eEEeecccccccCCccc--cccccccccccCCcccCCCC
Q 039561 150 -----YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 -----~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~~ 186 (190)
.|++++|.++ .+|..+ .+.+++.+.+++|.+...|.
T Consensus 147 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 8999999999 666654 68999999999998887764
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=151.07 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=117.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
+++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+....+..+.. +++|..+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls 112 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDIS 112 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT-CTTCCEEECT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC-CCCCCEEECC
Confidence 678999999999877788999999999999999998766888889999999999999876433333332 3333222
Q ss_pred ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----
Q 039561 79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----- 149 (190)
Q Consensus 79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----- 149 (190)
....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 11122344455556666666655554445555555666666666665554333445555666666655554
Q ss_pred -----------eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561 150 -----------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 -----------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.+.+.+|... ...+++.+.+++|.+.+.|
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 56666665555555443 3446777777777666655
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=7.8e-21 Score=140.37 Aligned_cols=167 Identities=12% Similarity=0.125 Sum_probs=135.6
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCc-ccCcCCccccCCCCccEEeccC-CcccCCCcHHHHHHHHHHHhh
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNH-LSGAIPLSLQNGTHFEVLDLRE-NAFIRDVPKWIKKSLLALFMM 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~l~~~ 78 (190)
.|++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+....+..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f---------- 101 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL---------- 101 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE----------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh----------
Confidence 36889999999998666688999999999999997 8854555788899999999998 88764333333
Q ss_pred cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCc---EEEcccC-cceeccCccccCCCCCC-EEeCCCCc----
Q 039561 79 KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQ---TLNLSQN-SFSRTIPESIGSMKSLE-SIDFSANH---- 149 (190)
Q Consensus 79 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~l~l~~N~---- 149 (190)
..+++|++|++++|.+.+ +|. +..+++|+ .|++++| .+++..+..+..+++|+ .+++++|.
T Consensus 102 --------~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 102 --------KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp --------ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred --------CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 348899999999999984 676 78888888 9999999 89866666788999999 99999986
Q ss_pred -----------eEEeeccc-ccccCCccc-cc-cccccccccCCcccCCCCC
Q 039561 150 -----------YLNLSNNN-LTGEIPSGI-QL-QGFHQSRFAGSELCGAPFP 187 (190)
Q Consensus 150 -----------~l~l~~N~-l~g~~p~~~-~~-~~l~~~~~~~n~l~~~~~~ 187 (190)
++++++|. +++..+..+ .+ .+++.+++++|.+.+.|..
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 79999995 984434444 57 8999999999988877743
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.3e-20 Score=143.96 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=108.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
+++++++++.++. +|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.. +++|..+.
T Consensus 33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECC
Confidence 5778899988886 676554 68999999999999666668899999999999999988766766653 55553331
Q ss_pred C----CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee--ccCccccCCCCCCEEeC--------
Q 039561 80 G----KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR--TIPESIGSMKSLESIDF-------- 145 (190)
Q Consensus 80 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~l~l-------- 145 (190)
. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++. ..+..+..+++|+.+++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 1 1222211 345555555555553333344555555555555555532 33444444444444444
Q ss_pred -------------CCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561 146 -------------SANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 146 -------------~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~ 185 (190)
++|. +|++++|.+++..|..+ .+.+++.+.+++|.+...|
T Consensus 187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 256 (330)
T 1xku_A 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256 (330)
T ss_dssp CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence 4443 46666666654444333 4556666666666555544
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=151.53 Aligned_cols=183 Identities=17% Similarity=0.131 Sum_probs=152.3
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM-- 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~-- 78 (190)
.|++|++++|.+++..|..+.++++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+. .+++|..+
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l 135 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLYNLKSLEV 135 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEE
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccccCCEEEC
Confidence 378999999999997788999999999999999999954445678899999999999998776665554 25555333
Q ss_pred -----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561 79 -----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---- 149 (190)
Q Consensus 79 -----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---- 149 (190)
....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 12235578889999999999999986555678999999999999999998777889999999999999975
Q ss_pred ------------eEEeecccccccCCcc-c-cccccccccccCCcccCCC
Q 039561 150 ------------YLNLSNNNLTGEIPSG-I-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ------------~l~l~~N~l~g~~p~~-~-~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.++ .+|.. + .+.+|+.+++++|.+.+.+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred cCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccC
Confidence 7999999999 67743 3 7899999999999777655
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=2.7e-20 Score=154.04 Aligned_cols=181 Identities=22% Similarity=0.200 Sum_probs=138.4
Q ss_pred CCcceeccCCccccCC--CcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561 1 MLQQGLKIQHKFSRSF--PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~--p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~ 78 (190)
+|++|++++|.+++.. +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+......+++|..+
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 3677888888887754 66778888888888888888766677777888888888888887665544321224444322
Q ss_pred -------cCCcccccCCCCCCcEEEccCCeeccc---CCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 79 -------KGKAFEYSTNLNVLRVIELSKNNFLGE---IAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
....+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 233455677789999999999998752 2356788899999999999999888888999999999999999
Q ss_pred c---------------eEEeecccccccCCccc-cccccccccccCCcc
Q 039561 149 H---------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSEL 181 (190)
Q Consensus 149 ~---------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l 181 (190)
+ ++++++|.+++..|..+ .+.+++.+++++|.+
T Consensus 511 ~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 7 68899999997666665 788899999999933
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.6e-20 Score=153.43 Aligned_cols=109 Identities=19% Similarity=0.145 Sum_probs=67.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.+++..|..++.+++|++|++++|.+++..|..|..+++|++|++++|.+.. +|..+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~------------- 142 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI------------- 142 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT-------------
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHH-------------
Confidence 5667777777776555567777777777777777775555556667777777777777553 33322
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 128 (190)
++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+++
T Consensus 143 ----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 143 ----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred ----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 2235566666666666655555555566666666666665553
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.1e-20 Score=153.01 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=121.6
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~---------- 122 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---------- 122 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT----------
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC----------
Confidence 3688999999999866678999999999999999998655667888999999999999976544444444
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~---------- 149 (190)
+++|++|++++|++++..+..++.+++|++|++++|.+++ ..|..++.+++|+.|++++|+
T Consensus 123 --------L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 123 --------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp --------CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred --------CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 8899999999999986555678899999999999999875 356778888999988888876
Q ss_pred ----------eEEeecccccccCCccccccccccccccCC
Q 039561 150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS 179 (190)
Q Consensus 150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n 179 (190)
.++++.|.+....|.......+..+.+.+|
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 466777777643333333333333333333
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=7.8e-20 Score=143.98 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=63.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~------------- 136 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI------------- 136 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT-------------
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHH-------------
Confidence 566777777776655556667777777777777776555555666777777777777655 344322
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 127 (190)
+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++
T Consensus 137 ----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 137 ----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 123455555555555555444444555555555555555544
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=3.5e-20 Score=151.69 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK- 79 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~- 79 (190)
.|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+.. +++|..+.
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT-CTTCCEEEC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc-CCCCcEEEC
Confidence 3789999999999877888999999999999999999777788999999999999999988766655653 33332221
Q ss_pred ------C-CcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 80 ------G-KAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 80 ------~-~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
. ..+..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|+.++++.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 0 123344555555566655555222333 34555555666666666655555555555555555555444
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=6.2e-21 Score=163.33 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=124.7
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcccC-----------------cCCcccc--CCCCccEEeccCCcccCCCcHHHHH
Q 039561 10 HKFSRSFPTSTGALSSLESLHLHRNHLSG-----------------AIPLSLQ--NGTHFEVLDLRENAFIRDVPKWIKK 70 (190)
Q Consensus 10 n~l~~~~p~~l~~l~~L~~l~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~ 70 (190)
|.+++ +|+.++++++|++|++++|.+++ .+|..+. .+++|++|++++|.+.+.+|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 56666 88899999999999999999996 2888877 9999999999999999999987764
Q ss_pred HHHHHHhh--------cC-CcccccCC-------CCCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccCcceeccCc
Q 039561 71 SLLALFMM--------KG-KAFEYSTN-------LNVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPE 132 (190)
Q Consensus 71 ~~~~l~~~--------~~-~~~~~~~~-------~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~ 132 (190)
+++|..+ .+ .+|..++. +++|+.|++++|.+. .+|. .++.+++|+.|++++|.++ .+|
T Consensus 514 -L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 514 -LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp -CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred -CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 4444322 11 23433333 347777777777777 6776 7777777777888777777 666
Q ss_pred cccCCCCCCEEeCCCCc----------------eEEeecccccccCCcccc-c--cccccccccCCcccCC
Q 039561 133 SIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQ-L--QGFHQSRFAGSELCGA 184 (190)
Q Consensus 133 ~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~-~--~~l~~~~~~~n~l~~~ 184 (190)
.++.+++|+.|++++|. +|++++|.++ .+|..+. . .+++.+.+++|.+++.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 67777777777777775 5777777777 6776552 2 2377777777766654
No 51
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=9.3e-20 Score=133.21 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=55.2
Q ss_pred eeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCccc
Q 039561 5 GLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFE 84 (190)
Q Consensus 5 L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~ 84 (190)
++.+++.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..
T Consensus 16 v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-------------- 78 (220)
T 2v9t_B 16 VDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-------------- 78 (220)
T ss_dssp EECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--------------
T ss_pred EEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--------------
Confidence 4444444443 343332 34555555555555333334445555555555555544333333322
Q ss_pred ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCE
Q 039561 85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142 (190)
Q Consensus 85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 142 (190)
+++|++|++++|.++...+..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 79 ----l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 79 ----LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp ----CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ----CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 455555555555554222233444555555555555555444444555555553
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=5.4e-20 Score=152.27 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=131.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
+++|++++|.+++..|..++.+++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+..
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------- 103 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG----------- 103 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-----------
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-----------
Confidence 678999999999877888999999999999999998777888999999999999999987666665544
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 104 -------l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 104 -------PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp -------CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred -------cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 8889999999999886557778888999999999999886443444458889999988886
Q ss_pred ------eEEeecccccccCCccccccccccccccCC
Q 039561 150 ------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS 179 (190)
Q Consensus 150 ------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n 179 (190)
.+++++|.+++..|..+....++.+.+.+|
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 478889999877777766667777777665
No 53
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=9.2e-20 Score=133.25 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=114.5
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+....+..+.
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~----------- 101 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE----------- 101 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT-----------
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc-----------
Confidence 368899999999986667899999999999999999977788999999999999999998743333333
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus 102 -------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 -------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 38999999999999998778899999999999999999997777779999999988877776
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=144.20 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=108.9
Q ss_pred CcceeccCCccccCCCccc--CCCCCCcEEEcccCcccCcCC----ccccCCCCccEEeccCCcccCCCcHHHHHHHHHH
Q 039561 2 LQQGLKIQHKFSRSFPTST--GALSSLESLHLHRNHLSGAIP----LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL 75 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l--~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l 75 (190)
|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.. +++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA-FPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC-CTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc-CCCC
Confidence 6677777777777677666 667777777777777764333 22334666777777777765444443321 3333
Q ss_pred Hhh--cCC-------c--ccccCCCCCCcEEEccCCeecccCCc----cCCCCCCCcEEEcccCcceeccCccccCC---
Q 039561 76 FMM--KGK-------A--FEYSTNLNVLRVIELSKNNFLGEIAK----GVTNPGASQTLNLSQNSFSRTIPESIGSM--- 137 (190)
Q Consensus 76 ~~~--~~~-------~--~~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~l~~l--- 137 (190)
..+ ..+ + ..+++.+++|++|++++|+++ .++. .++.++.|++|++++|.+++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 222 110 1 112345667777777777775 2222 13556777777777777776656666555
Q ss_pred CCCCEEeCCCCc-------------eEEeecccccccCCccccccccccccccCCccc
Q 039561 138 KSLESIDFSANH-------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC 182 (190)
Q Consensus 138 ~~L~~l~l~~N~-------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~ 182 (190)
++|+.|++++|+ +||+++|.+++ +|....+.+++.+++++|.+.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCC
Confidence 577777777765 67777777773 344345677777777777655
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=147.24 Aligned_cols=139 Identities=22% Similarity=0.337 Sum_probs=83.4
Q ss_pred CCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC--CCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561 21 GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR--DVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 21 ~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 98 (190)
..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+ +.+++|++|+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------------------~~l~~L~~L~Ls 382 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT------------------TQMKSLQQLDIS 382 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH------------------TTCTTCCEEECC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH------------------hhCCCCCEEECC
Confidence 455566666666666665555556666666666666666543 222222 236666666666
Q ss_pred CCeecccCCcc-CCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccC
Q 039561 99 KNNFLGEIAKG-VTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEI 162 (190)
Q Consensus 99 ~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~ 162 (190)
+|.+.+.+|.. +..++.|+.|++++|.+++..|..+. ++|+.|++++|+ ++++++|.++ .+
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l 459 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SV 459 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-cc
Confidence 66666534442 55566666666666666655555443 566666666665 5677777777 56
Q ss_pred Ccc-c-cccccccccccCCc
Q 039561 163 PSG-I-QLQGFHQSRFAGSE 180 (190)
Q Consensus 163 p~~-~-~~~~l~~~~~~~n~ 180 (190)
|.. + .+.+++.+++++|.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCcccEEECcCCC
Confidence 654 3 56667777777773
No 56
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=8.4e-20 Score=130.75 Aligned_cols=126 Identities=20% Similarity=0.203 Sum_probs=109.1
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCc-cccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPL-SLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
++++++++.++. +|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 578999999975 7776654 899999999999954443 3788999999999999988776766654
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.
T Consensus 77 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 -------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8999999999999998778889999999999999999998889999999999988877776
No 57
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=131.82 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=73.4
Q ss_pred cceeccCCccccCCC-cccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 3 QQGLKIQHKFSRSFP-TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 103 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG----------- 103 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-----------
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-----------
Confidence 455566666555433 23455666666666666665444445555666666666666654433333332
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.+++++|
T Consensus 104 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 104 -------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp -------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred -------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 666666666666666555566666666666666666666555666666666665554444
No 58
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=132.50 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=115.8
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
+++++++|.++. +|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+..
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 578899999987 776654 457899999999995544 45788999999999999987655544444
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeeccccccc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGE 161 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~ 161 (190)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++ ++|.+++.
T Consensus 80 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------~~N~l~~~ 144 (220)
T 2v70_A 80 -------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL--------YDNQITTV 144 (220)
T ss_dssp -------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC--------TTSCCCCB
T ss_pred -------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC--------CCCcCCEE
Confidence 899999999999999777777999999999999999999888899999999997765 45555544
Q ss_pred CCccc-cccccccccccCC
Q 039561 162 IPSGI-QLQGFHQSRFAGS 179 (190)
Q Consensus 162 ~p~~~-~~~~l~~~~~~~n 179 (190)
.|..+ .+.+++.+.+++|
T Consensus 145 ~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHhcCCCCCCEEEecCc
Confidence 44444 4555555555555
No 59
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=144.16 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=104.1
Q ss_pred cceeccCCccccCCCc---ccCCCCCCcEEEcccCcccCcCCccc--cCCCCccEEeccCCcccCCCcHHHHHHHHHHHh
Q 039561 3 QQGLKIQHKFSRSFPT---STGALSSLESLHLHRNHLSGAIPLSL--QNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM 77 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~---~l~~l~~L~~l~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~ 77 (190)
+.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+.....
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~------- 139 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL------- 139 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH-------
T ss_pred eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH-------
Confidence 4556666655432100 12235679999999999998888887 88999999999999988765522111
Q ss_pred hcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceec--cC--ccccCCCCCCEEeCCCCc----
Q 039561 78 MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT--IP--ESIGSMKSLESIDFSANH---- 149 (190)
Q Consensus 78 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p--~~l~~l~~L~~l~l~~N~---- 149 (190)
.+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. ++ ..+..+++|+.|++++|.
T Consensus 140 -------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 140 -------QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp -------HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred -------HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence 112356666666666666655555666666666666666665431 11 123455666666666665
Q ss_pred ---------------eEEeecccccccCCccc-cc---cccccccccCCcccCCC
Q 039561 150 ---------------YLNLSNNNLTGEIPSGI-QL---QGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ---------------~l~l~~N~l~g~~p~~~-~~---~~l~~~~~~~n~l~~~~ 185 (190)
+||+++|.+++..|+.+ .+ .+++.+++++|.+...|
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 56666666665545443 22 45666666666555444
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.2e-19 Score=152.14 Aligned_cols=146 Identities=21% Similarity=0.174 Sum_probs=92.7
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.. +|.
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~---------------- 90 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSD---------------- 90 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCT----------------
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cCh----------------
Confidence 444444444444333334444444444444444443334444444444444444444332 221
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------- 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------- 149 (190)
..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 91 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 -KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp -TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred -hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 134558888888888888876556778888888888888888887777778888888888888875
Q ss_pred -----eEEeecccccccCCccc
Q 039561 150 -----YLNLSNNNLTGEIPSGI 166 (190)
Q Consensus 150 -----~l~l~~N~l~g~~p~~~ 166 (190)
++++++|.+++..|..+
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGG
T ss_pred cccccEEECCCCcccccChhhh
Confidence 68888888886666544
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=9.6e-21 Score=145.52 Aligned_cols=178 Identities=18% Similarity=0.123 Sum_probs=123.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.. ..++.|..-...
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~~~--~~L~~L~l~~n~ 110 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-LVG--PSIETLHAANNN 110 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-EEC--TTCCEEECCSSC
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-cCC--CCcCEEECCCCc
Confidence 6889999999998767789999999999999999985443 78899999999999997643 211 011111111111
Q ss_pred ccc-ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccc-cCCCCCCEEeCCCCc----------
Q 039561 82 AFE-YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI-GSMKSLESIDFSANH---------- 149 (190)
Q Consensus 82 ~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~l~l~~N~---------- 149 (190)
+.. ....+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+ ..+++|+.|++++|.
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l 190 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccccc
Confidence 110 11235667778888888776556667777788888888888776655555 356778888887776
Q ss_pred ----eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561 150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.+++ +|..+ .+.+++.+++++|.+...|
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchh
Confidence 67777777774 33334 6777777777777666554
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=3.2e-19 Score=149.51 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=139.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM-- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~-- 78 (190)
|++|++++|.+++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|.+.+..+..+.. ++.|..+
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l 461 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLML 461 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT-CTTCCEEEC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc-Ccccccchh
Confidence 5677788888888777788888999999999998876555 56778888999999998876555544432 3444222
Q ss_pred -------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC--------ccccCCCCCCEE
Q 039561 79 -------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP--------ESIGSMKSLESI 143 (190)
Q Consensus 79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--------~~l~~l~~L~~l 143 (190)
.+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 13456778888999999999999986666778889999999999999885322 236788899999
Q ss_pred eCCCCc----------------eEEeecccccccCCccc--cccccccccccCCcccCCC
Q 039561 144 DFSANH----------------YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 144 ~l~~N~----------------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~ 185 (190)
++++|. ++++++|.++ .+|... .+.+++.+++++|.+.+.+
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 999886 7899999998 555543 6788999999999887665
No 63
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=4.2e-19 Score=130.48 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=57.9
Q ss_pred ceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcc
Q 039561 4 QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83 (190)
Q Consensus 4 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~ 83 (190)
+++.+++.++. +|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+....+..+.
T Consensus 23 ~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~-------------- 85 (229)
T 3e6j_A 23 TVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-------------- 85 (229)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--------------
T ss_pred EeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--------------
Confidence 34444544443 443332 4555555555555544444555555555555555554322112222
Q ss_pred cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEe
Q 039561 84 EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID 144 (190)
Q Consensus 84 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~ 144 (190)
.+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 86 ----~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 86 ----SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp ----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ----cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 2455555555555555333333455555555555555555 4455555555555443
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=147.91 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=133.5
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+....|..+..
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 98 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---------- 98 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT----------
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC----------
Confidence 3688999999999877778999999999999999998666677889999999999999977655555544
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~---------- 149 (190)
+++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|..++.+++|+.|++++|.
T Consensus 99 --------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 99 --------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp --------CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred --------ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 8899999999999885444468899999999999999986 368889999999999999885
Q ss_pred ----------eEEeecccccccCCccccccccccccccCC
Q 039561 150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS 179 (190)
Q Consensus 150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n 179 (190)
.+++++|.+++..|..+...+++.+.+++|
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred chhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 478899999877676665557788877776
No 65
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3e-19 Score=131.22 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=109.9
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+++..|..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+.
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----------- 109 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD----------- 109 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----------
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC-----------
Confidence 378999999999998788899999999999999999854446678899999999999998754444343
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
.+++|++|++++|++. .+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|
T Consensus 110 -------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 110 -------RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -------TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -------cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 3899999999999998 88988999999999999999999666667888999997664444
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=155.00 Aligned_cols=164 Identities=22% Similarity=0.218 Sum_probs=129.6
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcC-CccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAI-PLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~ 79 (190)
++++|++++|.+++..|..+.++++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..+.
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~---------- 94 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---------- 94 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC----------
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc----------
Confidence 3678899999998877888999999999999998655455 67788899999999999988766666554
Q ss_pred CCcccccCCCCCCcEEEccCCeecccCCcc--CCCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCc-------
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKG--VTNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANH------- 149 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~------- 149 (190)
.+++|++|++++|.+.+.+|.. ++.+++|++|++++|.+++..+ ..++.+++|+.|++++|.
T Consensus 95 --------~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 95 --------GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp --------SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred --------CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 4889999999999988766654 8889999999999999886554 578889999988888885
Q ss_pred -----------eEEeecccccccCCccc-ccc------ccccccccCCccc
Q 039561 150 -----------YLNLSNNNLTGEIPSGI-QLQ------GFHQSRFAGSELC 182 (190)
Q Consensus 150 -----------~l~l~~N~l~g~~p~~~-~~~------~l~~~~~~~n~l~ 182 (190)
.++++.|.+.+..|..+ ... .++.+.+++|.+.
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 57888888887777654 222 3777888887554
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=2.7e-19 Score=147.17 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=99.3
Q ss_pred CCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCC
Q 039561 21 GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKN 100 (190)
Q Consensus 21 ~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 100 (190)
..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ++... ..+..+++|++|++++|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~---------------~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVA---------------LMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB-TTHHH---------------HTTTTCTTCCEEECTTS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC-cccch---------------hhhcCCCCCCEEECCCC
Confidence 567778888888888886677777778888888888887654 22111 12334777777777777
Q ss_pred eecccCCc-cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCc
Q 039561 101 NFLGEIAK-GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPS 164 (190)
Q Consensus 101 ~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~ 164 (190)
.+.+.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|++++|+ +|++++|.++ .+|.
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 77754554 366677777777777777766665443 567777777775 6888888888 6776
Q ss_pred c-c-cccccccccccCCcc
Q 039561 165 G-I-QLQGFHQSRFAGSEL 181 (190)
Q Consensus 165 ~-~-~~~~l~~~~~~~n~l 181 (190)
. + .+.+++.+++++|.+
T Consensus 491 ~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TSTTTCTTCCCEECCSCCB
T ss_pred HHHhcCCCCCEEEecCCCc
Confidence 5 4 677888888888833
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=3e-19 Score=136.77 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=112.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ ++ .+.. +++|..+.
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAG-LQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTT-CTTCCEEECT
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcC-CCCCCEEECC
Confidence 5677777777765 44 5667777777777777777 3443 6677777777777777554 22 2221 23332220
Q ss_pred C-Cc--ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------
Q 039561 80 G-KA--FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------- 149 (190)
Q Consensus 80 ~-~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------- 149 (190)
+ .+ ...+..+++|++|++++|.+.+ ++. ++.+++|+.|++++|.+++ ++. +..+++|+.|++++|.
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l 191 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPL 191 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhh
Confidence 0 00 1124557778888888888763 333 6777888888888888874 333 7777888888888876
Q ss_pred -------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 -------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 -------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.++ .+|+...+.+++.+.+++|.+++.|
T Consensus 192 ~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred cCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCeeecCC
Confidence 6888888887 4444446778888888888776654
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=148.44 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=83.0
Q ss_pred CcceeccCCccccCC--CcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561 2 LQQGLKIQHKFSRSF--PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~--p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~ 79 (190)
|++|++++|.+++.. +..+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+..+.
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 414 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF------------- 414 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTS-------------
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccch-------------
Confidence 445555555554422 334445555555555555555 2333355555666666666555443331
Q ss_pred CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce-eccCccccCCCCCCEEeCCCCc---------
Q 039561 80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS-RTIPESIGSMKSLESIDFSANH--------- 149 (190)
Q Consensus 80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~N~--------- 149 (190)
..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.
T Consensus 415 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 415 ----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp ----CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ----hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 12223455555555555554444444555555555555555554 3344455555555555555553
Q ss_pred -------eEEeecccccccCCccc-cccccccccccCCc
Q 039561 150 -------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSE 180 (190)
Q Consensus 150 -------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~ 180 (190)
+|++++|.+++..|..+ .+.+++.+++++|.
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 56666666665444444 56666666666663
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.5e-19 Score=129.85 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=104.5
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.++. +| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+..+.
T Consensus 46 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~------------ 109 (197)
T 4ezg_A 46 LTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLS------------ 109 (197)
T ss_dssp CCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGSCCCT------------
T ss_pred ccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccChhhc------------
Confidence 5677788887774 55 5777788888888888665 333 566777888888888777654444443
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCc-ceeccCccccCCCCCCEEeCCCCceEEeecccccc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS-FSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTG 160 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g 160 (190)
.+++|++|++++|.+.+..|..++.+++|++|++++|. ++ .+| .+..+++|+. |++++|.++
T Consensus 110 ------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~--------L~l~~n~i~- 172 (197)
T 4ezg_A 110 ------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS--------LNIQFDGVH- 172 (197)
T ss_dssp ------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE--------EECTTBCCC-
T ss_pred ------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE--------EECCCCCCc-
Confidence 37778888888888876667777778888888888887 55 454 5677777775 457777777
Q ss_pred cCCccccccccccccccCCcccC
Q 039561 161 EIPSGIQLQGFHQSRFAGSELCG 183 (190)
Q Consensus 161 ~~p~~~~~~~l~~~~~~~n~l~~ 183 (190)
.++....+.+++.+++++|.+.+
T Consensus 173 ~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCTTGGGCSSCCEEEECBC----
T ss_pred ChHHhccCCCCCEEEeeCcccCC
Confidence 45644478899999999997653
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=9.1e-20 Score=140.77 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=109.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC--CCcHHHHHHHHHHHhh
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR--DVPKWIKKSLLALFMM 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~~~~~l~~~ 78 (190)
.|++|++++|.++. +|..+. ++|++|++++|.++...+..+..+++|+.|++++|.+.. ..+..+.. + +|..+
T Consensus 103 ~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L 177 (332)
T 2ft3_A 103 KLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYL 177 (332)
T ss_dssp TCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCC
T ss_pred CCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEE
Confidence 36778888888874 665554 778888888888874444557778888888888887642 33332221 1 22111
Q ss_pred c--C----CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561 79 K--G----KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--- 149 (190)
Q Consensus 79 ~--~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--- 149 (190)
. . .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 178 ~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 178 RISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp BCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred ECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 0 0 122222 1467777777777765555667777777777777777775555567777777777777775
Q ss_pred ------------eEEeecccccccCCccc-c------ccccccccccCCccc
Q 039561 150 ------------YLNLSNNNLTGEIPSGI-Q------LQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ------------~l~l~~N~l~g~~p~~~-~------~~~l~~~~~~~n~l~ 182 (190)
++++++|.+++..+..+ . ...++.+.+.+|.+.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 67788888874333332 1 345677778888443
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=144.31 Aligned_cols=103 Identities=30% Similarity=0.378 Sum_probs=80.9
Q ss_pred ccccCCCCCCcEEEccCCeecc--cCCccCCCCCCCcEEEcccCcceeccCc-cccCCCCCCEEeCCCCc----------
Q 039561 83 FEYSTNLNVLRVIELSKNNFLG--EIAKGVTNPGASQTLNLSQNSFSRTIPE-SIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~N~---------- 149 (190)
|..++.+++|++|++++|++.+ .+|..++.+++|++|++++|.+++.+|. .+..+++|+.|++++|.
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 3445557888888888888875 4556677888888888888888864665 37778888888888885
Q ss_pred ----eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
+|++++|.++ .+|+.+ .+.+++.+++++|.+...|.
T Consensus 421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCH
Confidence 7899999998 888866 78899999999998887764
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.8e-18 Score=132.45 Aligned_cols=167 Identities=13% Similarity=0.260 Sum_probs=114.5
Q ss_pred ccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--cCC---
Q 039561 7 KIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--KGK--- 81 (190)
Q Consensus 7 l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~~~--- 81 (190)
+..+.+++.+ ....+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. +. .+++|..+ .+.
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~-~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LK-NLTKITELELSGNPLK 98 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GT-TCCSCCEEECCSCCCS
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-Hc-cCCCCCEEEccCCcCC
Confidence 3444444422 3456889999999999998 566 578899999999999997653 33 33 24444322 111
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
....+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.
T Consensus 99 ~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 174 (308)
T 1h6u_A 99 NVSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSK 174 (308)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred CchhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCC
Confidence 12345667777888888777763 343 67777888888888877743 33 6777788888888776
Q ss_pred --eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 --YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 --~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.++ .+|....+.+++.+.+++|.+.+.+
T Consensus 175 L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 175 LTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCEEECCSSCCC-CCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred CCEEECCCCccC-cChhhcCCCCCCEEEccCCccCccc
Confidence 6888888887 4555447778888888888766554
No 74
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=1.5e-18 Score=121.46 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=102.9
Q ss_pred CcceeccCCccc-cCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFS-RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
|++|++++|.++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+.+|..+..
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------- 93 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEK---------- 93 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHH----------
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhh----------
Confidence 678888888887 5678777888889999999998884 3 66778888999999998887767777666
Q ss_pred CcccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceeccC---ccccCCCCCCEEeCCCCceEEeecc
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTIP---ESIGSMKSLESIDFSANHYLNLSNN 156 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~l~l~~N~~l~l~~N 156 (190)
+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|+ +++|
T Consensus 94 --------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~--------l~~n 157 (168)
T 2ell_A 94 --------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD--------GYDR 157 (168)
T ss_dssp --------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET--------TEET
T ss_pred --------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec--------CCCC
Confidence 888899999988887431 2677888889999999888884433 3677888888555 6666
Q ss_pred cccccCCc
Q 039561 157 NLTGEIPS 164 (190)
Q Consensus 157 ~l~g~~p~ 164 (190)
.+. ++|+
T Consensus 158 ~~~-~~~~ 164 (168)
T 2ell_A 158 EDQ-EAPD 164 (168)
T ss_dssp TSC-BCCS
T ss_pred Chh-hccc
Confidence 665 4554
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.7e-19 Score=146.42 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=140.6
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC-CCcHHHHHHHHHHHhh-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR-DVPKWIKKSLLALFMM- 78 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~~l~~~- 78 (190)
.|++|++++|.+++..|..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+. .+++|..+
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~ 129 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLR 129 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEE
Confidence 37899999999999777889999999999999999996666668999999999999999875 2344443 25555333
Q ss_pred ------cCCcc-cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcc-ccCCCCCCEEeCCCCc-
Q 039561 79 ------KGKAF-EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES-IGSMKSLESIDFSANH- 149 (190)
Q Consensus 79 ------~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~N~- 149 (190)
.+.++ ..+..+++|++|++++|.+.+..|..++.+++|+.|+++.|.+. .+|.. +..+++|+.+++++|.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence 12233 46888999999999999999889999999999999999999987 55554 3568899988877764
Q ss_pred ------------------eEEeecccccccCCccc-----cccccccccccCCcccCC
Q 039561 150 ------------------YLNLSNNNLTGEIPSGI-----QLQGFHQSRFAGSELCGA 184 (190)
Q Consensus 150 ------------------~l~l~~N~l~g~~p~~~-----~~~~l~~~~~~~n~l~~~ 184 (190)
.+++++|.+++..+..+ .+.+++.+.+.+|.+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence 56777777765544332 356777778888865553
No 76
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.2e-19 Score=138.21 Aligned_cols=128 Identities=27% Similarity=0.228 Sum_probs=76.0
Q ss_pred CcceeccCCccccCCCcccC-CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFSRSFPTSTG-ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++.|++++|.+++..+..+. .+++|++|++++|.++...+..|..+++|++|++++|.+....+..+.
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------- 109 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS----------- 109 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----------
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC-----------
Confidence 45566666666664444454 666666666666666644445566666666666666665443332232
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCc-cc---cCCCCCCEEeCCCC
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE-SI---GSMKSLESIDFSAN 148 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l---~~l~~L~~l~l~~N 148 (190)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|. .+ ..+++|+.|++++|
T Consensus 110 -------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 110 -------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp -------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSS
T ss_pred -------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCC
Confidence 36667777777777765556666677777777777777763 333 33 34566665554444
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.78 E-value=9.7e-19 Score=120.08 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=106.7
Q ss_pred CcceeccCCccc-cCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFS-RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---------- 86 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK---------- 86 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH----------
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh----------
Confidence 688999999998 66888889999999999999999844 67888999999999999988777777766
Q ss_pred CcccccCCCCCCcEEEccCCeeccc-CCccCCCCCCCcEEEcccCcceeccC---ccccCCCCCCEEeCC
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGE-IAKGVTNPGASQTLNLSQNSFSRTIP---ESIGSMKSLESIDFS 146 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~l~l~ 146 (190)
+++|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.++++
T Consensus 87 --------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 --------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 89999999999999853 34778899999999999999985544 468889999988875
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.7e-18 Score=131.55 Aligned_cols=155 Identities=21% Similarity=0.315 Sum_probs=109.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ ++. +.
T Consensus 48 L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~------------ 109 (291)
T 1h6t_A 48 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-LK------------ 109 (291)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-GT------------
T ss_pred ccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-hc------------
Confidence 6788888888876 44 57888899999999999884 443 7788899999999988754 222 33
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
.+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 110 ------~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~ 179 (291)
T 1h6t_A 110 ------DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179 (291)
T ss_dssp ------TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred ------cCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCc
Confidence 26677777777777663 3 3466667777777777777633 456667777777777765
Q ss_pred --eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 --YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 --~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.++ .+|+...+.+++.+.+++|.++..|
T Consensus 180 L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 180 LQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred cCEEECCCCcCC-CChhhccCCCCCEEECcCCcccCCc
Confidence 6777888887 4565447777888888888666544
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.1e-18 Score=122.29 Aligned_cols=126 Identities=16% Similarity=0.097 Sum_probs=100.8
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.++.+++.++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------- 73 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN------------- 73 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-------------
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC-------------
Confidence 356777777776 56544 46899999999999955556678899999999999998754333333
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 74 -----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 74 -----KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp -----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 38999999999999986555668899999999999999996666678899999987766664
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=2e-18 Score=142.96 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=120.5
Q ss_pred eccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccc
Q 039561 6 LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEY 85 (190)
Q Consensus 6 ~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~ 85 (190)
+-++.+++. +|+.+. +++++|++++|.++...+..|..+++|++|++++|.+.+..+..+.
T Consensus 37 ~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~---------------- 97 (635)
T 4g8a_A 37 QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---------------- 97 (635)
T ss_dssp ECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------------
T ss_pred ECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc----------------
Confidence 334445654 676553 5799999999999965567899999999999999998754444444
Q ss_pred cCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------------
Q 039561 86 STNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------- 149 (190)
Q Consensus 86 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------- 149 (190)
++++|++|+|++|++.+..+.+|.++++|++|++++|.+++..+..|+.+++|+.|++++|.
T Consensus 98 --~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 98 --SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp --TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred --CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 49999999999999986656789999999999999999996666679999999999988886
Q ss_pred -eEEeecccccccCCccc-cccccc----cccccCCcccCC
Q 039561 150 -YLNLSNNNLTGEIPSGI-QLQGFH----QSRFAGSELCGA 184 (190)
Q Consensus 150 -~l~l~~N~l~g~~p~~~-~~~~l~----~~~~~~n~l~~~ 184 (190)
+|++++|.+++..|..+ .+.++. ...++.|.+...
T Consensus 176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred hhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 68888888876656554 333332 234555544433
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=146.03 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=113.3
Q ss_pred CcceeccCCccccCCCcc--cCCCCCCcEEEcccCcccCcCC-ccccCCCCccEEeccCCcccCCCcHHHHHHH--HHHH
Q 039561 2 LQQGLKIQHKFSRSFPTS--TGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAFIRDVPKWIKKSL--LALF 76 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~--l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~--~~l~ 76 (190)
|++|++++|.+++.+|.. +.++++|++|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+.. + +.|.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccc
Confidence 556666666666544443 6666666666666666664333 45666777777777777766655655442 2 1111
Q ss_pred hh-------cCCcccccCC-------------------------------------------------------------
Q 039561 77 MM-------KGKAFEYSTN------------------------------------------------------------- 88 (190)
Q Consensus 77 ~~-------~~~~~~~~~~------------------------------------------------------------- 88 (190)
.+ .+..+..++.
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 10 0111111111
Q ss_pred -------CCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 89 -------LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 89 -------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
.++++.|++++|.+.+..+..+..++.|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 1456777777777766666677777778888888887776667777777778877777775
Q ss_pred ----eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561 150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.+++..|..+ .+.+++.+.+++|.+.+.+
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 67777777774444444 5777777777777666543
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=1.4e-18 Score=142.83 Aligned_cols=101 Identities=25% Similarity=0.357 Sum_probs=80.1
Q ss_pred ccCCCCCCcEEEccCCeecc--cCCccCCCCCCCcEEEcccCcceeccCc-cccCCCCCCEEeCCCCc------------
Q 039561 85 YSTNLNVLRVIELSKNNFLG--EIAKGVTNPGASQTLNLSQNSFSRTIPE-SIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 85 ~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~N~------------ 149 (190)
.++.+++|++|++++|++++ .+|..++.+++|+.|++++|.+++.+|. .+..+++|+.+++++|.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~ 451 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTT
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCc
Confidence 44458888888888888875 3345678888888888888888864554 47778888999988886
Q ss_pred --eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561 150 --YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 --~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~ 186 (190)
+|++++|.++ .+|+.+ .+.+++.+++++|.+...|.
T Consensus 452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCH
Confidence 7899999998 788766 78889999999998887764
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.1e-18 Score=128.84 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=101.2
Q ss_pred CCcceeccCCc-cccCCCcccCCCCCCcEEEccc-CcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561 1 MLQQGLKIQHK-FSRSFPTSTGALSSLESLHLHR-NHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78 (190)
Q Consensus 1 ~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~ 78 (190)
.|++|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|++|++++|.+.+ +|. +..
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~-------- 125 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTK-------- 125 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTT--------
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccc--------
Confidence 37889999997 8875556788999999999998 99985555678889999999999999765 554 322
Q ss_pred cCCcccccCCCCCCc---EEEccCC-eecccCCccCCCCCCCc-EEEcccCcceeccCccccCCCCCCEEeCCCC-c---
Q 039561 79 KGKAFEYSTNLNVLR---VIELSKN-NFLGEIAKGVTNPGASQ-TLNLSQNSFSRTIPESIGSMKSLESIDFSAN-H--- 149 (190)
Q Consensus 79 ~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N-~--- 149 (190)
+++++ +|++++| .+.+..+..+..+++|+ .|++++|.++ .+|......++|+.+++++| .
T Consensus 126 ----------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 126 ----------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp ----------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCE
T ss_pred ----------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCccc
Confidence 33333 4455544 44433233344444454 5555544444 33322222244444444444 1
Q ss_pred --------------eEEeecccccccCCccccccccccccccCC
Q 039561 150 --------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS 179 (190)
Q Consensus 150 --------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n 179 (190)
++++++|.++ .+|.. .+..++.+.+.++
T Consensus 195 i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 195 IDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 5678889998 66765 6788888887776
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=135.72 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=103.7
Q ss_pred eeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--C--
Q 039561 5 GLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--G-- 80 (190)
Q Consensus 5 L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--~-- 80 (190)
.+.+++.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.. +++|..+. .
T Consensus 36 c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSC
T ss_pred eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCc
Confidence 4667777776 676554 58999999999999555557899999999999999987765555543 33332221 0
Q ss_pred --Ccc-cccCCCCCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccC-cceeccCccccCCCCCCEEeCCCCc-----
Q 039561 81 --KAF-EYSTNLNVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQN-SFSRTIPESIGSMKSLESIDFSANH----- 149 (190)
Q Consensus 81 --~~~-~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~l~l~~N~----- 149 (190)
.++ ..+..+++|++|++++|.+. .+|. .+..+++|++|++++| .+++..+..+..+++|+.+++++|.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 111 12444555555555555554 2332 4555555555555555 2443334455555555555555553
Q ss_pred -----------eEEeecccccccCCccc--cccccccccccCCcccCCC
Q 039561 150 -----------YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 -----------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~ 185 (190)
++++++|.+. .+|..+ .+.+++.+++++|.+.+.+
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred HHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccc
Confidence 4555555554 333332 3556666666666665544
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=8e-19 Score=142.21 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=120.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH----H
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL----F 76 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l----~ 76 (190)
.|++|++++|.+++..| +..+++|++|++++|.++ .+|. .++|++|++++|.+.+..+..+. .++.| .
T Consensus 59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~----~~~L~~L~L~~N~l~~~~~~~l~-~L~~L~L~~N 130 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNISRVSCSRGQ-GKKNIYLANN 130 (487)
T ss_dssp TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE----CTTCCEEECCSSCCCCEEECCCS-SCEEEECCSS
T ss_pred CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC----CCCcCEEECcCCcCCCCCccccC-CCCEEECCCC
Confidence 37889999999987554 888999999999999888 3332 25666666666665543332211 11111 0
Q ss_pred hhcCCcccccCCCCCCcEEEccCCeecccCCccCC-CCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------
Q 039561 77 MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVT-NPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------ 149 (190)
Q Consensus 77 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------ 149 (190)
.+.+..+..++.+++|+.|++++|.+++..|..+. .++.|+.|++++|.+++. |. ...+++|+.|++++|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH
Confidence 11222244556688899999999998877777775 688899999999988855 32 3458889999999887
Q ss_pred ---------eEEeecccccccCCccc-cccccccccccCCcc
Q 039561 150 ---------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSEL 181 (190)
Q Consensus 150 ---------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l 181 (190)
+|++++|.+++ +|..+ .+.++..+++++|.+
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 78999999984 67666 678899999999943
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=7.1e-18 Score=131.74 Aligned_cols=155 Identities=21% Similarity=0.152 Sum_probs=122.4
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCcccc-CCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQ-NGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
+++++++++++. +|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 467888998887 776554 4689999999999965566666 8999999999999987655444444
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------ 149 (190)
+++|++|++++|++.+..+..+..+.+|+.|++++|.+++..|..|..+++|+.|++++|.
T Consensus 87 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 87 -------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp -------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred -------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 8999999999999986666789999999999999999998778899999999998887775
Q ss_pred -------eEEeecccccccCCcc-c-cccc--cccccccCC
Q 039561 150 -------YLNLSNNNLTGEIPSG-I-QLQG--FHQSRFAGS 179 (190)
Q Consensus 150 -------~l~l~~N~l~g~~p~~-~-~~~~--l~~~~~~~n 179 (190)
+||+++|.|+ .+|.. + .+.. ++.+.+++|
T Consensus 160 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp --CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred ccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence 4777777777 44432 2 2333 355666666
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=3.3e-19 Score=136.91 Aligned_cols=137 Identities=16% Similarity=0.115 Sum_probs=69.9
Q ss_pred CCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCee
Q 039561 23 LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF 102 (190)
Q Consensus 23 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 102 (190)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. ..+++|++|++++|.+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-----------------ASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-----------------GGTTTCCEEECTTSCC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-----------------hccCcCCEEECCCCcC
Confidence 34455555555555543344444555555555555555443333221 1255666666666666
Q ss_pred cccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeeccccc-ccCCccc
Q 039561 103 LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLT-GEIPSGI 166 (190)
Q Consensus 103 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~-g~~p~~~ 166 (190)
++. +. ...+++|+.|++++|.++ .+|..+..+++|+.|++++|. ++++++|.+. +.+|..+
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 182 YDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 532 32 223566666666666665 334445556666655555554 4555555555 3444433
Q ss_pred -cccccccccccCC
Q 039561 167 -QLQGFHQSRFAGS 179 (190)
Q Consensus 167 -~~~~l~~~~~~~n 179 (190)
.+..++.+.+.++
T Consensus 259 ~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 259 SKNQRVQTVAKQTV 272 (317)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hccccceEEECCCc
Confidence 4444555554433
No 88
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=2.3e-17 Score=132.70 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=108.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
|++|++++|.+++ +| ++.+++|++|++++|.+++ ++ +..+++|++|++++|.+.+ +| +. .+++|..+.
T Consensus 66 L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~ 135 (457)
T 3bz5_A 66 LTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VS-QNPLLTYLNCA 135 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CT-TCTTCCEEECT
T ss_pred CCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CC-CCCcCCEEECC
Confidence 6778888888887 44 7778888888888888874 44 6677888888888887665 33 22 233332221
Q ss_pred C-Ccc-cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------
Q 039561 80 G-KAF-EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------- 149 (190)
Q Consensus 80 ~-~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------- 149 (190)
. .+. -.++.+++|++|++++|...+.+ .++.+++|+.|++++|.+++ +| +..+++|+.+++++|.
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~ 210 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQ 210 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred CCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeecccc
Confidence 1 010 02445666666776666433333 35666777777777777764 44 6667777777777765
Q ss_pred -----eEEeecccccccCCccccccccccccccCCcccCCCCC
Q 039561 150 -----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFP 187 (190)
Q Consensus 150 -----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~~ 187 (190)
+|++++|.+++ +| ...+.+++.+.+++|.+.+.|.+
T Consensus 211 l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCT
T ss_pred CCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHH
Confidence 67777777774 56 33667777777777777766643
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-17 Score=132.81 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=81.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+++ +| .++.+++|++|++++|.+++ +| +..+++|++|++++|.+.+. + +..
T Consensus 43 ~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~---------- 104 (457)
T 3bz5_A 43 TLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP---------- 104 (457)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT----------
T ss_pred CCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC----------
Confidence 37899999999998 55 78999999999999999994 55 78899999999999998763 3 332
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
+++|++|++++|.+++ ++ ++.+++|++|++++|.+++ ++ ++.+++|+.+++++|
T Consensus 105 --------l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 105 --------LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp --------CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred --------CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCC
Confidence 5556666666666553 32 5555666666666666553 22 445555555555555
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7.8e-18 Score=139.52 Aligned_cols=157 Identities=20% Similarity=0.306 Sum_probs=111.9
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|+.|++++|.+.. ++ .+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+ +| .+.
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~----------- 106 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLK----------- 106 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TST-----------
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhc-----------
Confidence 36778888888876 44 57888999999999998884 443 7788889999999888754 22 232
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------- 149 (190)
.+++|+.|++++|.+.+ + +.+..++.|+.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 107 -------~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~ 175 (605)
T 1m9s_A 107 -------DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLT 175 (605)
T ss_dssp -------TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred -------cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCC
Confidence 36677777777777763 3 3366677777777777777643 456677777777777775
Q ss_pred ---eEEeecccccccCCccccccccccccccCCcccCCCC
Q 039561 150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~ 186 (190)
.|+|++|.|+ .+|....+.+|+.+.+++|.+++.|.
T Consensus 176 ~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 176 KLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TCCEEECCSSCCC-BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCEEECcCCCCC-CChHHccCCCCCEEEccCCcCcCCcc
Confidence 6778888887 45654477888888888887776654
No 91
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=118.92 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=106.1
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
++++++++.++. +|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+.+..+..+..
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 467889999886 776554 68999999999999 78888999999999999999987655554544
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus 77 ------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 77 ------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8999999999999997777789999999999999999996555578899999988766665
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=1.6e-18 Score=146.47 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=111.7
Q ss_pred CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEE
Q 039561 16 FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVI 95 (190)
Q Consensus 16 ~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L 95 (190)
.+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.. +++|++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------l~~L~~L 275 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN------------------LSNLRVL 275 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG------------------GTTCCEE
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC------------------CCCCCEE
Confidence 4667888999999999999998 78878888999999999999987 78877765 9999999
Q ss_pred EccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------------eEEeecccc
Q 039561 96 ELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------------YLNLSNNNL 158 (190)
Q Consensus 96 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------------~l~l~~N~l 158 (190)
+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|+.|++++|. .+++++|.+
T Consensus 276 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 276 DLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp ECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 99999998 88999999999999999999998 889889999999999999998 478999999
Q ss_pred cccCCccc
Q 039561 159 TGEIPSGI 166 (190)
Q Consensus 159 ~g~~p~~~ 166 (190)
+|.+|..+
T Consensus 354 ~~~~p~~l 361 (727)
T 4b8c_D 354 EIPLPHER 361 (727)
T ss_dssp CCCCCCC-
T ss_pred cCcCcccc
Confidence 99998864
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.2e-17 Score=134.54 Aligned_cols=172 Identities=25% Similarity=0.334 Sum_probs=115.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
|++|++++|.+++..| ++.+++|++|++++|.++ .++ .+..+++|+.|++++|.+.+..+ +. .+++|..+.
T Consensus 201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~ 273 (466)
T 1o6v_A 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLG 273 (466)
T ss_dssp CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECC
T ss_pred CCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECC
Confidence 6677777777776433 566777777777777776 333 45566777777777777654332 21 133332221
Q ss_pred C----CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------
Q 039561 80 G----KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------ 149 (190)
Q Consensus 80 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------ 149 (190)
+ ..+ .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++..| +..+++|+.|++++|.
T Consensus 274 ~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 348 (466)
T 1o6v_A 274 ANQISNIS-PLAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348 (466)
T ss_dssp SSCCCCCG-GGTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCccCccc-cccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchh
Confidence 1 111 145577888888888888743 33 6777888888888888875544 6778888888888886
Q ss_pred --------eEEeecccccccCCccccccccccccccCCcccCCCC
Q 039561 150 --------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 --------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~ 186 (190)
++++++|.+++..| ...+..++.+.+++|.+.+.|.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCch
Confidence 78888888886666 4478888888888887776553
No 94
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=2.4e-17 Score=127.68 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=101.7
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
|++|++++|.....++ .+..+++|+++++++|.++ ..+. +..+++|+.|++++|.+.+. +. +. .++.|..+.
T Consensus 134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~-~l~~L~~L~l~ 207 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDI-SP-LA-SLTSLHYFTAY 207 (347)
T ss_dssp CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCC-GG-GG-GCTTCCEEECC
T ss_pred eeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccc-cc-cc-CCCccceeecc
Confidence 6677777775554333 4677777777777777776 3332 56677777777777775532 22 11 133332221
Q ss_pred C-Ccc--cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------
Q 039561 80 G-KAF--EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------- 149 (190)
Q Consensus 80 ~-~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------- 149 (190)
. .+. ..+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++ + +.+..+++|+.+++++|.
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~ 283 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVL 283 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred cCCCCCCchhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhh
Confidence 0 000 114456667777777776653 333 5666677777777776663 2 346666667777766665
Q ss_pred -------eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561 150 -------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA 184 (190)
Q Consensus 150 -------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~ 184 (190)
+|++++|.+++..|..+ .+.+++.+++++|.+.+.
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 56666666665555544 566666666666655544
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.3e-18 Score=126.67 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=80.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ +|..
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-------------- 103 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGI-------------- 103 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTC--------------
T ss_pred CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCcc--------------
Confidence 5677777777765 44 5667777777777777777 3443 6677777777777777654 2220
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
. .++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 104 -----~-~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 104 -----P-SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp -----C-CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSC
T ss_pred -----c-cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCc
Confidence 1 1567888888888764 33 47777888888888888874 33 57777778877766665
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.7e-17 Score=132.94 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=112.2
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC-
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG- 80 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~- 80 (190)
+++|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+.+ +|. +...++.|..-..
T Consensus 61 L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQ 131 (571)
T ss_dssp CSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSC
T ss_pred ccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCc
Confidence 5678888888887 676553 67888888888888 666 346788888888888765 555 4321111111011
Q ss_pred --CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561 81 --KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------- 149 (190)
Q Consensus 81 --~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------- 149 (190)
.+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~ 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPV 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC-
T ss_pred CCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHH
Confidence 1233 36778888888888874 565 46788888888888874 666 54 778888888873
Q ss_pred ----------eEEeecccccccCCccc-cccccccccccCCcccC
Q 039561 150 ----------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCG 183 (190)
Q Consensus 150 ----------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~ 183 (190)
+|++++|.|+ .+|..+ .+.+++.+++++|.+++
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 5788888888 678765 78888888888886653
No 97
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=4.5e-17 Score=116.50 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=87.3
Q ss_pred CcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcH-HHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561 26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPK-WIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG 104 (190)
Q Consensus 26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 104 (190)
.+++++++|.++ .+|..+.. .++.|++++|.+.+..+. .+.. +++|++|++++|.+++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~------------------l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGR------------------LPHLVKLELKRNQLTG 68 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGG------------------CTTCCEEECCSSCCCC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCcccccc------------------CCCCCEEECCCCCCCC
Confidence 378999999998 78876643 899999999998765443 2433 8999999999999998
Q ss_pred cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 889999999999999999999998888889999999977766654
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1e-18 Score=137.43 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=138.1
Q ss_pred CCcceeccCC---ccccCCCccc-------CCCCCCcEEEcccCcccC----cCCccccCCCCccEEeccCCcccCCCcH
Q 039561 1 MLQQGLKIQH---KFSRSFPTST-------GALSSLESLHLHRNHLSG----AIPLSLQNGTHFEVLDLRENAFIRDVPK 66 (190)
Q Consensus 1 ~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~l~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 66 (190)
.|++|++++| .+++.+|..+ ..+++|++|++++|.++. .++..+..+++|++|++++|.+....+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 3788899885 4445556554 688999999999999985 3666777889999999999987655454
Q ss_pred HHHHHHHHH------------Hhh--cC------Ccc---cccCCCCCCcEEEccCCeecc-----cCCccCCCCCCCcE
Q 039561 67 WIKKSLLAL------------FMM--KG------KAF---EYSTNLNVLRVIELSKNNFLG-----EIAKGVTNPGASQT 118 (190)
Q Consensus 67 ~~~~~~~~l------------~~~--~~------~~~---~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~ 118 (190)
.+...+..+ ..+ .. .++ ..+..+++|+.|++++|.++. ..+..+..+++|+.
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence 454434332 111 11 111 234467889999999998872 23447788899999
Q ss_pred EEcccCcce----eccCccccCCCCCCEEeCCCCc----------------------eEEeecccccc----cCCccc--
Q 039561 119 LNLSQNSFS----RTIPESIGSMKSLESIDFSANH----------------------YLNLSNNNLTG----EIPSGI-- 166 (190)
Q Consensus 119 L~l~~n~l~----~~~p~~l~~l~~L~~l~l~~N~----------------------~l~l~~N~l~g----~~p~~~-- 166 (190)
|++++|.++ +.+|..+..+++|+.|++++|. +|++++|.+++ .+|..+
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 999999986 5678888889999999999886 79999999996 477776
Q ss_pred cccccccccccCCcccCCC
Q 039561 167 QLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 167 ~~~~l~~~~~~~n~l~~~~ 185 (190)
.+.+++.+.+.+|.+.+.+
T Consensus 301 ~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HCTTCCEEECTTSBSCTTS
T ss_pred cCCCceEEEccCCcCCcch
Confidence 3689999999999877654
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=5.8e-17 Score=125.50 Aligned_cols=169 Identities=23% Similarity=0.275 Sum_probs=116.9
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~ 79 (190)
|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|+.+++++|.+.+..+ +. .+++|..+ .
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~ 229 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIG 229 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECC
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEcc
Confidence 5677777777765322 667777777777777776 3333 5566677777777766554322 11 23333222 1
Q ss_pred CC-c--ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------
Q 039561 80 GK-A--FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------- 149 (190)
Q Consensus 80 ~~-~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------- 149 (190)
+. + ...+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.
T Consensus 230 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 230 NNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred CCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChh
Confidence 11 0 1115568899999999999874 3 457888999999999999984 3 457888999999999997
Q ss_pred ---------eEEeecccccccCCccccccccccccccCCccc
Q 039561 150 ---------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ---------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~ 182 (190)
++++++|.+++..| ...+.+++.+++++|.++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 89999999995544 558999999999999664
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=9e-17 Score=122.05 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=105.5
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+++ +++ +..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+ + +.+..
T Consensus 69 ~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~---------- 132 (291)
T 1h6t_A 69 NVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-I-NGLVH---------- 132 (291)
T ss_dssp TCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-C-GGGGG----------
T ss_pred CCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC-C-hhhcC----------
Confidence 37899999999998 444 899999999999999998 455 48889999999999999765 3 23333
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------- 149 (190)
+++|+.|++++|.+++. ..++.+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 133 --------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~ 200 (291)
T 1h6t_A 133 --------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLK 200 (291)
T ss_dssp --------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred --------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCC
Confidence 77888888888888743 457778888888888888875433 7788888888888886
Q ss_pred ---eEEeecccccc
Q 039561 150 ---YLNLSNNNLTG 160 (190)
Q Consensus 150 ---~l~l~~N~l~g 160 (190)
+|++++|.++.
T Consensus 201 ~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 201 NLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEEEEEEEEEC
T ss_pred CCCEEECcCCcccC
Confidence 78899999873
No 101
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.4e-16 Score=112.32 Aligned_cols=132 Identities=19% Similarity=0.141 Sum_probs=105.2
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.+++++++++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------- 73 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD------------- 73 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-------------
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc-------------
Confidence 568889998886 66544 37999999999999965556678899999999999998754443333
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccC
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEI 162 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~ 162 (190)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.++ +++|.+.+..
T Consensus 74 -----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--------l~~N~~~~~~ 140 (177)
T 2o6r_A 74 -----KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW--------LHTNPWDCSC 140 (177)
T ss_dssp -----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--------CCSSCBCCCH
T ss_pred -----CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE--------ecCCCeeccC
Confidence 389999999999999966666788999999999999999965555578888898555 6777777654
Q ss_pred C
Q 039561 163 P 163 (190)
Q Consensus 163 p 163 (190)
|
T Consensus 141 ~ 141 (177)
T 2o6r_A 141 P 141 (177)
T ss_dssp H
T ss_pred c
Confidence 4
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5.7e-17 Score=116.31 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=104.7
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.++. ++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..
T Consensus 67 ~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~---------- 134 (197)
T 4ezg_A 67 NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT---------- 134 (197)
T ss_dssp TCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT----------
T ss_pred CCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh----------
Confidence 37899999997764 447899999999999999999767888999999999999999988767776655
Q ss_pred CcccccCCCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 81 KAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 135 --------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 135 --------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp --------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred --------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 9999999999998 65 566 58889999999999999984 44 6888899996664443
No 103
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=9.5e-17 Score=129.21 Aligned_cols=173 Identities=22% Similarity=0.257 Sum_probs=121.5
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK- 79 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~- 79 (190)
.|++|++++|.++. ++ .+..+++|++|++++|.+++..| +..+++|+.|++++|.+.+ ++ .+. .+++|..+.
T Consensus 178 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l 250 (466)
T 1o6v_A 178 TLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDL 250 (466)
T ss_dssp TCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEEC
T ss_pred CCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hhh-cCCCCCEEEC
Confidence 37899999999987 33 58899999999999999995544 6678999999999999765 33 222 233332221
Q ss_pred -C-Cc--ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------
Q 039561 80 -G-KA--FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------ 149 (190)
Q Consensus 80 -~-~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------ 149 (190)
+ .+ ...+..+++|++|++++|.+.+ ++. +..++.|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 251 ANNQISNLAPLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCCccccchhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 1 11 1125567777778887777764 333 6677788888888887774333 6677788888888876
Q ss_pred --------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 --------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 --------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.+++ ++....+.+++.+.+++|.+.+.+
T Consensus 327 ~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCG
T ss_pred hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCccCccc
Confidence 67888888874 454447778888888888666543
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=2.2e-16 Score=126.87 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=55.8
Q ss_pred CCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc---CCcccccCCCCCCcEEEccCC
Q 039561 24 SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK---GKAFEYSTNLNVLRVIELSKN 100 (190)
Q Consensus 24 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~---~~~~~~~~~~~~L~~L~l~~n 100 (190)
++|++|++++|.++ .+| .+..+++|++|++++|.+.+ +|..+. .++.|..-. ..+| .++.+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~-~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLPP-SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCCCT-TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCCcc-cccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 45666666666666 355 35666666666666666543 333221 111110000 0122 3445566666666666
Q ss_pred eecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 101 NFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 101 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.+.+ +|... .+|+.|++++|.++ .+|+ ++.+++|+.+++++|+
T Consensus 206 ~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 206 SLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred cCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence 5552 33321 35555555555554 4442 5555555555555554
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=3.5e-16 Score=125.70 Aligned_cols=166 Identities=19% Similarity=0.159 Sum_probs=105.8
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-- 79 (190)
+++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+.+ +|... ..++.|..-.
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~-~~L~~L~L~~n~ 142 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP-PLLEYLGVSNNQ 142 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC-TTCCEEECCSSC
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC-CCCCEEECcCCC
Confidence 4667777777776 4431 3567777777777773 5532 2566666666666543 22111 0111110000
Q ss_pred -CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561 80 -GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------- 149 (190)
Q Consensus 80 -~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------- 149 (190)
..+| .++.+++|++|++++|++. .+|..+ .+|++|++++|.+++ +| .++.+++|+.+++++|.
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~ 215 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPL 215 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcC
Confidence 1133 3566888888888888887 356543 478888888888874 55 57788888888888886
Q ss_pred ---eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
++++++|.++ .+|+...+.+++.+.+++|.+.+.|
T Consensus 216 ~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp TCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred cccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCccc
Confidence 6788888887 6776446777777777777666654
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=5.1e-18 Score=130.87 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=110.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCc-CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGA-IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
++.+++++|.+.+..+ .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 72 l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~---------- 140 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK---------- 140 (336)
T ss_dssp CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----------
T ss_pred ceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc----------
Confidence 5677888888887544 466788889999988888744 6667778888889998888866555554443
Q ss_pred CcccccCCCCCCcEEEccCC-eeccc-CCccCCCCCCCcEEEcccC-cceec-cCccccCCC-CCCEEeCCCC--c----
Q 039561 81 KAFEYSTNLNVLRVIELSKN-NFLGE-IAKGVTNPGASQTLNLSQN-SFSRT-IPESIGSMK-SLESIDFSAN--H---- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~l~l~~N--~---- 149 (190)
+++|++|++++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|+.|++++| .
T Consensus 141 --------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 141 --------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp --------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred --------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 677777777777 45542 4555566777777777777 66643 455566677 7777777777 2
Q ss_pred -------------eEEeeccc-ccccCCccc-cccccccccccCC
Q 039561 150 -------------YLNLSNNN-LTGEIPSGI-QLQGFHQSRFAGS 179 (190)
Q Consensus 150 -------------~l~l~~N~-l~g~~p~~~-~~~~l~~~~~~~n 179 (190)
+|++++|. +++..+..+ .+.+++.+.+++|
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 67777777 554555444 6677777777777
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=6.5e-18 Score=131.97 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=48.7
Q ss_pred CcceeccCCccccCCC----cccCCCC-CCcEEEcccCcccCcCCccccCC-----CCccEEeccCCcccCCCcHHHHH
Q 039561 2 LQQGLKIQHKFSRSFP----TSTGALS-SLESLHLHRNHLSGAIPLSLQNG-----THFEVLDLRENAFIRDVPKWIKK 70 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p----~~l~~l~-~L~~l~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~~~~ 70 (190)
|++|++++|.+++..+ ..+..++ +|++|++++|.++...+..+..+ ++|++|++++|.+.+..+..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 6778888888877544 5566777 78888888888875545445443 77888888888877666665554
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=5.2e-16 Score=127.65 Aligned_cols=139 Identities=24% Similarity=0.356 Sum_probs=85.0
Q ss_pred CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--cC----CcccccCCCCCCcEEEcc
Q 039561 25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--KG----KAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~~----~~~~~~~~~~~L~~L~l~ 98 (190)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| .. +++|..+ .+ .+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~~---l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-EL---PASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-CC---CTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-cc---cCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 89999999999994 77765 378999999999977 567 22 2222111 11 1222 222 56666666
Q ss_pred CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------eEEeecccccccCCccc
Q 039561 99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------YLNLSNNNLTGEIPSGI 166 (190)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------~l~l~~N~l~g~~p~~~ 166 (190)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|. +|++++|.|+ .+|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chhh-H
Confidence 666653 444 45666666666666663 444 34566666666664 5666666666 5665 3
Q ss_pred ccccc-------ccccccCCcccCCC
Q 039561 167 QLQGF-------HQSRFAGSELCGAP 185 (190)
Q Consensus 167 ~~~~l-------~~~~~~~n~l~~~~ 185 (190)
. .++ +.+++++|.++..|
T Consensus 199 ~-~~L~~~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 199 P-VRNHHSEETEIFFRCRENRITHIP 223 (571)
T ss_dssp C---------CCEEEECCSSCCCCCC
T ss_pred H-HhhhcccccceEEecCCCcceecC
Confidence 2 155 66666666666555
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=6.3e-17 Score=113.14 Aligned_cols=137 Identities=23% Similarity=0.199 Sum_probs=112.6
Q ss_pred CCCCCcEEEcccCccc-CcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCC
Q 039561 22 ALSSLESLHLHRNHLS-GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKN 100 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 100 (190)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------------~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------------NLPKLPKLKKLELSEN 81 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------------SCCCCSSCCEEEEESC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------------hhccCCCCCEEECcCC
Confidence 4588999999999998 67888888899999999999997653 2 3345899999999999
Q ss_pred eecccCCccCCCCCCCcEEEcccCcceecc-CccccCCCCCCEEeCCCCceEEeecccccccCCc----cc-cccccccc
Q 039561 101 NFLGEIAKGVTNPGASQTLNLSQNSFSRTI-PESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS----GI-QLQGFHQS 174 (190)
Q Consensus 101 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~----~~-~~~~l~~~ 174 (190)
.+.+.+|..+..+++|++|++++|.+++.. +..+..+++|+. |++++|.+++ +|. .+ .+.+++.+
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~--------L~l~~N~l~~-~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS--------LDLFNCEVTN-LNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE--------EECCSSGGGT-STTHHHHHHTTCSSCCEE
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE--------EEeeCCcCcc-hHHHHHHHHHhCccCcEe
Confidence 999767887778999999999999998532 267888899985 5588888984 454 34 78999999
Q ss_pred cccCCcccCCCCC
Q 039561 175 RFAGSELCGAPFP 187 (190)
Q Consensus 175 ~~~~n~l~~~~~~ 187 (190)
++.+|.....|..
T Consensus 153 ~l~~n~~~~~~~~ 165 (168)
T 2ell_A 153 DGYDREDQEAPDS 165 (168)
T ss_dssp TTEETTSCBCCSS
T ss_pred cCCCCChhhcccc
Confidence 9999987777654
No 110
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.4e-16 Score=112.24 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=83.4
Q ss_pred CcceeccCCccccCCCcccCCCC-CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALS-SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
|++|++++|.++. ++ .+..+. +|++|++++|.+++ + ..+..+++|++|++++|.+.+..+..+..
T Consensus 21 L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~---------- 86 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA---------- 86 (176)
T ss_dssp CEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHH----------
T ss_pred ceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhc----------
Confidence 5677788887775 44 344443 78888888888773 3 45667777888888888766433333344
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccCcceeccCcc----ccCCCCCCEEeCCCC
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPES----IGSMKSLESIDFSAN 148 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~l~l~~N 148 (190)
+++|++|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.+|++.|
T Consensus 87 --------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 87 --------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp --------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred --------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 777888888888775 4554 6677778888888888776 55553 677777776664444
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=6.3e-16 Score=115.77 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=114.2
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+.+. +. +..
T Consensus 22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~------------ 83 (263)
T 1xeu_A 22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKD------------ 83 (263)
T ss_dssp HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTT------------
T ss_pred HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hcc------------
Confidence 445677777776 33 5677888888999888888 566 577788888999988887653 33 433
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------- 149 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------- 149 (190)
+++|++|++++|++++ +|.. .. ++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 84 ------l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L 152 (263)
T 1xeu_A 84 ------LTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKL 152 (263)
T ss_dssp ------CSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTC
T ss_pred ------CCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCC
Confidence 8888889998888874 4543 33 888889998888874 33 58888888888888886
Q ss_pred -eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561 150 -YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 150 -~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~ 185 (190)
+|++++|.+++. +....+.+++.+.+++|.+++.|
T Consensus 153 ~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 153 EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 788888888854 44447788888888888666554
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=9.2e-18 Score=132.03 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=124.0
Q ss_pred CCcceeccCCccccCC----CcccCCCCCCcEEEcccCcc---cCcCCccc-------cCCCCccEEeccCCcccCCCcH
Q 039561 1 MLQQGLKIQHKFSRSF----PTSTGALSSLESLHLHRNHL---SGAIPLSL-------QNGTHFEVLDLRENAFIRDVPK 66 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~----p~~l~~l~~L~~l~l~~n~~---~~~~~~~~-------~~l~~L~~L~l~~n~~~~~~p~ 66 (190)
.|++|++++|.++... +..+..+++|++|++++|.+ ++.+|..+ ..+++|++|++++|.+......
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 3788999999998753 34477899999999999644 34445444 6789999999999998774333
Q ss_pred HHHHHHH---HHHhh--cCC-c--------ccccCCC---------CCCcEEEccCCeec-ccCC---ccCCCCCCCcEE
Q 039561 67 WIKKSLL---ALFMM--KGK-A--------FEYSTNL---------NVLRVIELSKNNFL-GEIA---KGVTNPGASQTL 119 (190)
Q Consensus 67 ~~~~~~~---~l~~~--~~~-~--------~~~~~~~---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~~L 119 (190)
.+...+. .|..+ ... + +..+..+ ++|++|++++|+++ +.++ ..+..++.|+.|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 3322222 23222 111 1 1112222 78888888888886 3334 345567788888
Q ss_pred EcccCccee-----ccCccccCCCCCCEEeCCCCc--------------------eEEeeccccccc----CCccc-c--
Q 039561 120 NLSQNSFSR-----TIPESIGSMKSLESIDFSANH--------------------YLNLSNNNLTGE----IPSGI-Q-- 167 (190)
Q Consensus 120 ~l~~n~l~~-----~~p~~l~~l~~L~~l~l~~N~--------------------~l~l~~N~l~g~----~p~~~-~-- 167 (190)
++++|.++. ..+..+..+++|+.|++++|. +|++++|.+++. +|..+ .
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 888888872 344477788888888888886 788888888755 34443 2
Q ss_pred ccccccccccCCcccC
Q 039561 168 LQGFHQSRFAGSELCG 183 (190)
Q Consensus 168 ~~~l~~~~~~~n~l~~ 183 (190)
..+++.+++++|.+++
T Consensus 273 ~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIEL 288 (386)
T ss_dssp SCCCCEEECCSSCCBH
T ss_pred CCCeEEEECcCCcCCH
Confidence 6778888888887664
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=5.6e-16 Score=128.42 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=104.2
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+++. ++ +..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+.+ ++ .+..
T Consensus 66 ~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~---------- 129 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD-IN-GLVH---------- 129 (605)
T ss_dssp TCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCC-CG-GGGG----------
T ss_pred CCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCC-Cc-cccC----------
Confidence 478899999999984 43 889999999999999998 455 67889999999999999765 33 2333
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------- 149 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------- 149 (190)
+++|+.|++++|.+.+. ..++.++.|+.|++++|.+++..| +..+++|+.|++++|+
T Consensus 130 --------l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~ 197 (605)
T 1m9s_A 130 --------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLK 197 (605)
T ss_dssp --------CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred --------CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCC
Confidence 77788888888887743 457777888888888888875444 7777888888888876
Q ss_pred ---eEEeeccccccc
Q 039561 150 ---YLNLSNNNLTGE 161 (190)
Q Consensus 150 ---~l~l~~N~l~g~ 161 (190)
.|++++|.+++.
T Consensus 198 ~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 198 NLDVLELFSQECLNK 212 (605)
T ss_dssp TCSEEECCSEEEECC
T ss_pred CCCEEEccCCcCcCC
Confidence 788888888743
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=5.4e-18 Score=143.29 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+.. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..
T Consensus 225 ~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------- 291 (727)
T 4b8c_D 225 LWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS---------- 291 (727)
T ss_dssp CCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG----------
T ss_pred CCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC----------
Confidence 37889999999984 8888889999999999999999 89999999999999999999987 67876665
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcccc
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG 135 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 135 (190)
+++|++|+|++|.++ .+|..++.+++|+.|++++|.+++.+|..+.
T Consensus 292 --------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 292 --------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp --------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred --------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 899999999999997 8898899999999999999999988777664
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.5e-17 Score=128.67 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=117.7
Q ss_pred ceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC----ccccCCC-CccEEeccCCcccCCCcHHHHHHH----HH
Q 039561 4 QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP----LSLQNGT-HFEVLDLRENAFIRDVPKWIKKSL----LA 74 (190)
Q Consensus 4 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~~----~~ 74 (190)
.+.++.|.+++.+|..+...++|++|++++|.++...+ ..+..++ +|++|++++|.+.+..+..+...+ +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788999999777766677779999999999995444 6677888 899999999999887777766522 22
Q ss_pred HHhh--cC-----Cccc----ccCCC-CCCcEEEccCCeecccCCcc----CCC-CCCCcEEEcccCcceec----cCcc
Q 039561 75 LFMM--KG-----KAFE----YSTNL-NVLRVIELSKNNFLGEIAKG----VTN-PGASQTLNLSQNSFSRT----IPES 133 (190)
Q Consensus 75 l~~~--~~-----~~~~----~~~~~-~~L~~L~l~~n~l~~~~p~~----~~~-l~~L~~L~l~~n~l~~~----~p~~ 133 (190)
|..+ .+ ..+. .+..+ ++|++|++++|.+++..+.. +.. .+.|++|++++|.+++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 2221 11 1111 12223 56777777777776443332 223 25777777777777642 2333
Q ss_pred ccCCC-CCCEEeCCCCc---------------------eEEeeccccccc----CCccc-c-ccccccccccCCcccCCC
Q 039561 134 IGSMK-SLESIDFSANH---------------------YLNLSNNNLTGE----IPSGI-Q-LQGFHQSRFAGSELCGAP 185 (190)
Q Consensus 134 l~~l~-~L~~l~l~~N~---------------------~l~l~~N~l~g~----~p~~~-~-~~~l~~~~~~~n~l~~~~ 185 (190)
+...+ +|+.|++++|. +||+++|.+++. +++.+ . ..+++.+++++|.+.+.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 67777777775 577777777642 33333 2 246777777777666544
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=1.1e-17 Score=129.05 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=125.8
Q ss_pred CCcceeccCCccccC-CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCC-cccCC-CcHHHHHHHHHHHh
Q 039561 1 MLQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLREN-AFIRD-VPKWIKKSLLALFM 77 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~~~~~~~~l~~ 77 (190)
.|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++..+. .+++|..
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~ 172 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDE 172 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCE
Confidence 367888888888765 6667788888888888888887666777777888888888888 44432 222222 2333432
Q ss_pred h--cCC-------cccccCCCC-CCcEEEccCC--eec-ccCCccCCCCCCCcEEEcccCc-ceeccCccccCCCCCCEE
Q 039561 78 M--KGK-------AFEYSTNLN-VLRVIELSKN--NFL-GEIAKGVTNPGASQTLNLSQNS-FSRTIPESIGSMKSLESI 143 (190)
Q Consensus 78 ~--~~~-------~~~~~~~~~-~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l 143 (190)
+ .+. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 2 111 233455688 8999999998 444 3556667778999999999998 776777788889999999
Q ss_pred eCCCCc-----------------eEEeecccccccCCcc-c-cc-cccccccccCCcccCCC
Q 039561 144 DFSANH-----------------YLNLSNNNLTGEIPSG-I-QL-QGFHQSRFAGSELCGAP 185 (190)
Q Consensus 144 ~l~~N~-----------------~l~l~~N~l~g~~p~~-~-~~-~~l~~~~~~~n~l~~~~ 185 (190)
++++|. +|++++| +++. + .+ ..+..+.+++|.+++..
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCcccc
Confidence 999984 6777777 3332 2 23 34667778888777553
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2.2e-16 Score=122.74 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=109.2
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHh---h-
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM---M- 78 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~---~- 78 (190)
++++.++++++. +|..+ .+++++|++++|+++...+..|..+++|++|++++|.+.+.+|...+..+.++.. +
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 345666777775 66555 3578888888888873333457778888888888888665555432222333211 1
Q ss_pred ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEccc-CcceeccCccccCCC-CCCEEeCCCCc---
Q 039561 79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ-NSFSRTIPESIGSMK-SLESIDFSANH--- 149 (190)
Q Consensus 79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~l~l~~N~--- 149 (190)
....++.+..+++|++|++++|++....+..+.....+..+++.+ +.+....+..+..+. .++.|++++|.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 111245567788888888888888744444444555666666644 445533333444443 46677777775
Q ss_pred ------------eEEeec-ccccccCCccc--cccccccccccCCcccCCCC
Q 039561 150 ------------YLNLSN-NNLTGEIPSGI--QLQGFHQSRFAGSELCGAPF 186 (190)
Q Consensus 150 ------------~l~l~~-N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~~ 186 (190)
.+++++ |.++ .+|..+ .+.+++.+++++|.+...|.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccCh
Confidence 566654 4444 666543 67777777777777766654
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=108.58 Aligned_cols=123 Identities=23% Similarity=0.312 Sum_probs=100.5
Q ss_pred CcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeeccc
Q 039561 26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGE 105 (190)
Q Consensus 26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 105 (190)
-++++++++.++ .+|..+. +.++.|++++|.+. .+|..+.. +++|+.|++++|.+++.
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------YKHLTLIDLSNNRISTL 69 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------CTTCCEEECCSSCCCCC
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------ccCCCEEECCCCcCCEe
Confidence 368999999999 7886653 68999999999976 56765554 89999999999999977
Q ss_pred CCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccCCc-cc-cccccccccccCC
Q 039561 106 IAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS-GI-QLQGFHQSRFAGS 179 (190)
Q Consensus 106 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~-~~-~~~~l~~~~~~~n 179 (190)
.+..|..+++|+.|++++|.+++..|..|..+++|+.|+ +++|.|+ .+|. .+ .+.+++.+.+++|
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~--------L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS--------LHGNDIS-VVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--------CCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE--------CCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence 778899999999999999999977777899999999665 6666676 3444 33 5777777777777
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.5e-15 Score=107.01 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=94.4
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~---------- 98 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK---------- 98 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC----------
Confidence 4789999999999866667889999999999999999555566788999999999999987654443433
Q ss_pred CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 131 (190)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus 99 --------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 99 --------LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp --------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --------CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8999999999999985545556889999999999999986554
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=2e-16 Score=108.46 Aligned_cols=128 Identities=20% Similarity=0.158 Sum_probs=103.3
Q ss_pred CCCCCcEEEcccCccc-CcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCC
Q 039561 22 ALSSLESLHLHRNHLS-GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKN 100 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 100 (190)
..++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. . .++.+++|++|++++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------------~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------------NLPKLNKLKKLELSDN 74 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------------TCCCCTTCCEEECCSS
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------------hhhcCCCCCEEECCCC
Confidence 3478999999999998 77888888999999999999997654 2 3345899999999999
Q ss_pred eecccCCccCCCCCCCcEEEcccCcceec-cCccccCCCCCCEEeCCCCceEEeecccccccCC---ccc-ccccccccc
Q 039561 101 NFLGEIAKGVTNPGASQTLNLSQNSFSRT-IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIP---SGI-QLQGFHQSR 175 (190)
Q Consensus 101 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p---~~~-~~~~l~~~~ 175 (190)
.+.+.+|..++.+++|++|++++|.+++. .+..+..+++|+.+ ++++|.+++..+ ..+ .+.+++.++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L--------~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL--------DLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE--------ECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE--------eCcCCcccchHHHHHHHHHHCCCccccc
Confidence 99976888787899999999999999853 34788899999955 578888885443 233 677777776
Q ss_pred cc
Q 039561 176 FA 177 (190)
Q Consensus 176 ~~ 177 (190)
++
T Consensus 147 l~ 148 (149)
T 2je0_A 147 GY 148 (149)
T ss_dssp TB
T ss_pred CC
Confidence 54
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=9.4e-16 Score=126.27 Aligned_cols=109 Identities=27% Similarity=0.317 Sum_probs=80.8
Q ss_pred CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561 25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG 104 (190)
Q Consensus 25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 104 (190)
.|++|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA------------------LRCLEVLQASDNALEN 500 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG------------------CTTCCEEECCSSCCCC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhc------------------CCCCCEEECCCCCCCC
Confidence 4778888888887 4665 777888888888888866 66766654 7788888888888874
Q ss_pred cCCccCCCCCCCcEEEcccCcceecc-CccccCCCCCCEEeCCCCceEEeecccccccCCc
Q 039561 105 EIAKGVTNPGASQTLNLSQNSFSRTI-PESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS 164 (190)
Q Consensus 105 ~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~ 164 (190)
+| .++.+++|+.|++++|.+++.. |..++.+++|+.| ++++|.|++..|.
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L--------~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL--------NLQGNSLCQEEGI 551 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE--------ECTTSGGGGSSSC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE--------EecCCcCCCCccH
Confidence 56 6778888888888888887655 7778888888744 4677777755443
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=1e-14 Score=121.14 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=17.2
Q ss_pred eEEeecccccccCCccc-cccccccccccCCccc
Q 039561 150 YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 ~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~ 182 (190)
+|++++|.|+ .+|..+ .+.+++.+++++|.+.
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 4555555555 455544 4555555555555443
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=8.7e-18 Score=120.70 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=108.7
Q ss_pred CcceeccCCccccCCCc------ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH
Q 039561 2 LQQGLKIQHKFSRSFPT------STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL 75 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~------~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l 75 (190)
++.++++.+.+++.+|. .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+|..+..
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~----- 91 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV----- 91 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-----
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhc-----
Confidence 46678888999888776 7889999999999999999 577 7888999999999999976 57776655
Q ss_pred HhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCceEEee
Q 039561 76 FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANHYLNLS 154 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~~l~l~ 154 (190)
+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|+. ++++
T Consensus 92 -------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~--------L~l~ 148 (198)
T 1ds9_A 92 -------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED--------LLLA 148 (198)
T ss_dssp -------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE--------EEEC
T ss_pred -------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE--------EEec
Confidence 6789999999999984 55 57788999999999999984322 46888888885 4578
Q ss_pred cccccccCCc
Q 039561 155 NNNLTGEIPS 164 (190)
Q Consensus 155 ~N~l~g~~p~ 164 (190)
+|.+++.+|.
T Consensus 149 ~N~l~~~~~~ 158 (198)
T 1ds9_A 149 GNPLYNDYKE 158 (198)
T ss_dssp SCHHHHHHHT
T ss_pred CCcccccccc
Confidence 8888766665
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=1.8e-14 Score=119.77 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=81.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--- 78 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--- 78 (190)
+++|++++|.++. +|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+. .+|.. +.+|..+
T Consensus 42 l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~~----l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCCC----CTTCCEEEEC
T ss_pred CcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCCC----CCCCCEEECc
Confidence 4677888888874 676555 67888888888887 5664 4577888888888765 34441 1222111
Q ss_pred cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561 79 KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------- 149 (190)
Q Consensus 79 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------- 149 (190)
...+...-..+++|+.|++++|++. .+|.. +++|++|++++|.++ .+|.. .++|+.|++++|.
T Consensus 110 ~N~l~~l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~~~ 181 (622)
T 3g06_A 110 SNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPMLPS 181 (622)
T ss_dssp SCCCCCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCT
T ss_pred CCcCCCCCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEEECCCCCCCCCcccCC
Confidence 1111000012455666666666665 34442 356677777777666 34432 3455556555554
Q ss_pred ---eEEeecccccccCCc
Q 039561 150 ---YLNLSNNNLTGEIPS 164 (190)
Q Consensus 150 ---~l~l~~N~l~g~~p~ 164 (190)
+|++++|.++ .+|.
T Consensus 182 ~L~~L~Ls~N~l~-~l~~ 198 (622)
T 3g06_A 182 GLQELSVSDNQLA-SLPT 198 (622)
T ss_dssp TCCEEECCSSCCS-CCCC
T ss_pred CCcEEECCCCCCC-CCCC
Confidence 5666666666 3444
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=6.2e-15 Score=103.38 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=26.1
Q ss_pred CCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCE
Q 039561 89 LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142 (190)
Q Consensus 89 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 142 (190)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 445555555555554333333445555555555555555333334445555553
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=6.5e-17 Score=129.56 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCCCcEEEccCCeecccCCccCC-----CCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc----------
Q 039561 89 LNVLRVIELSKNNFLGEIAKGVT-----NPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH---------- 149 (190)
Q Consensus 89 ~~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~---------- 149 (190)
+++|++|++++|.+++..+..+. ..+.|+.|++++|.+++. ++..+..+++|+.|++++|.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 66677777776666533222221 124666777776666643 34445556677777777665
Q ss_pred -----------eEEeecccccc----cCCccc-cccccccccccCCccc
Q 039561 150 -----------YLNLSNNNLTG----EIPSGI-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 -----------~l~l~~N~l~g----~~p~~~-~~~~l~~~~~~~n~l~ 182 (190)
+|++++|.+++ .+|..+ ...+++.+++++|.+.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 57777777764 455554 5667777777777554
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=2.2e-16 Score=126.50 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceecc-----CccccCCCCCCEEeCCCCc------------
Q 039561 91 VLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRTI-----PESIGSMKSLESIDFSANH------------ 149 (190)
Q Consensus 91 ~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~-----p~~l~~l~~L~~l~l~~N~------------ 149 (190)
+|++|++++|.+++. ++..+..++.|++|++++|.+++.. +..+..+++|+.|++++|.
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 455555555555431 2344444555666666666554321 1112235556666666554
Q ss_pred --------eEEeecccccccCCccc-c-----ccccccccccCCccc
Q 039561 150 --------YLNLSNNNLTGEIPSGI-Q-----LQGFHQSRFAGSELC 182 (190)
Q Consensus 150 --------~l~l~~N~l~g~~p~~~-~-----~~~l~~~~~~~n~l~ 182 (190)
+|++++|.+++..+..+ . ..+++.+++++|.+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 56666666653322222 1 135666666666544
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.1e-14 Score=113.28 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=39.4
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccccCCCCccE-EeccCCccc
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEV-LDLRENAFI 61 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~~~ 61 (190)
+++|++++|+++...+..|.++++|++|++++|.+.+.+| ..|..++.++. +.+..|++.
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 6788899999887444568889999999999988754444 23444554443 334444443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.4e-15 Score=125.23 Aligned_cols=120 Identities=22% Similarity=0.187 Sum_probs=87.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~----------- 506 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN----------- 506 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-----------
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-----------
Confidence 5677888888877 565 777888888888888887 777777788888888888888665 45 4433
Q ss_pred cccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceeccCcc---ccCCCCCCEEe
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTIPES---IGSMKSLESID 144 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~l~ 144 (190)
+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|.. +..+++|+.|+
T Consensus 507 -------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 -------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 778888888888887554 777778888888888888887443321 23366777665
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.5e-14 Score=101.42 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=91.4
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
.+++++++|.++. +|..+. +++++|++++|.+++..|..|..+++|++|++++|.+.+..+..+..
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~----------- 76 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK----------- 76 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC-----------
Confidence 4678999999987 776664 89999999999999777888999999999999999987544443333
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceecc
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI 130 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 130 (190)
+++|++|++++|++.+..+..+..+++|+.|++++|.++...
T Consensus 77 -------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 77 -------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred -------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 899999999999999665667999999999999999998543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=2.4e-15 Score=105.91 Aligned_cols=131 Identities=16% Similarity=0.114 Sum_probs=102.6
Q ss_pred ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561 19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 98 (190)
.+.+.++|++|++++|.++ .++......++|++|++++|.+.+. . .+..+++|++|+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~------------------~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--D------------------GFPLLRRLKTLLVN 72 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--C------------------CCCCCSSCCEEECC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--c------------------ccccCCCCCEEECC
Confidence 4667899999999999999 5664333344999999999997653 2 23448999999999
Q ss_pred CCeecccCCccCCCCCCCcEEEcccCcceeccCc--cccCCCCCCEEeCCCCceEEeecccccccCCcc----c-ccccc
Q 039561 99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE--SIGSMKSLESIDFSANHYLNLSNNNLTGEIPSG----I-QLQGF 171 (190)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~----~-~~~~l 171 (190)
+|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+.++ +++|.++ .+|.. + .+.++
T Consensus 73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~--------l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 73 NNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC--------ILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE--------CCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE--------ecCCCCC-CcHhHHHHHHHHCCcc
Confidence 99998543344588999999999999997 6666 788888898554 7788887 66764 3 68888
Q ss_pred ccccccCCc
Q 039561 172 HQSRFAGSE 180 (190)
Q Consensus 172 ~~~~~~~n~ 180 (190)
+.+++.+|.
T Consensus 143 ~~Ld~~~n~ 151 (176)
T 1a9n_A 143 RVLDFQKVK 151 (176)
T ss_dssp SEETTEECC
T ss_pred ceeCCCcCC
Confidence 888888873
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=3.4e-14 Score=99.95 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred cEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccC
Q 039561 27 ESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEI 106 (190)
Q Consensus 27 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 106 (190)
+.+++++|.++ .+|..+. +.+++|++++|.+.+..|..+.. +++|++|++++|++++..
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~------------------l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDH------------------LVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT------------------CTTCCEEECCSSCCCCCC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcC------------------CcCCCEEECCCCCCCccC
Confidence 45666666665 5555442 55666666666655444443332 666666666666666433
Q ss_pred CccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEe
Q 039561 107 AKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID 144 (190)
Q Consensus 107 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~ 144 (190)
+..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 74 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 33445666666666666666643333466666666444
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=2.9e-14 Score=100.33 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=88.3
Q ss_pred cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561 3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82 (190)
Q Consensus 3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~ 82 (190)
+.+++++|.++. +|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+.
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~------------- 78 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD------------- 78 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC-------------
Confidence 568899999976 787665 8999999999999977788899999999999999998753333333
Q ss_pred ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee
Q 039561 83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128 (190)
Q Consensus 83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 128 (190)
.+++|++|++++|++.+..+..+..+++|++|++++|.+..
T Consensus 79 -----~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 79 -----KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -----TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -----CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 38999999999999995545568999999999999999983
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=7.8e-16 Score=110.45 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=100.9
Q ss_pred CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561 1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~ 80 (190)
.|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~---------- 113 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK---------- 113 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH----------
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc----------
Confidence 37899999999998 77 8889999999999999999 788777777899999999999875 44 4544
Q ss_pred CcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCcc----------ccCCCCCCEEe
Q 039561 81 KAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPES----------IGSMKSLESID 144 (190)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~----------l~~l~~L~~l~ 144 (190)
+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.+|
T Consensus 114 --------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 --------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp --------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred --------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7789999999999984322 46888999999999999998766653 77888888654
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=9.7e-13 Score=101.86 Aligned_cols=104 Identities=17% Similarity=0.070 Sum_probs=80.2
Q ss_pred ceeccCC-ccccCCCcccCCCCCCcEEEccc-CcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561 4 QGLKIQH-KFSRSFPTSTGALSSLESLHLHR-NHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81 (190)
Q Consensus 4 ~L~l~~n-~l~~~~p~~l~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~ 81 (190)
.++.+++ .++. +|. +..+++|++|++++ |.+++..+..|..+++|+.|++++|.+.+..|..+..
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----------- 78 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF----------- 78 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-----------
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC-----------
Confidence 4677777 7776 777 88888999999985 8888655577888899999999999887766655544
Q ss_pred cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee
Q 039561 82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128 (190)
Q Consensus 82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 128 (190)
+++|+.|+|++|++++..+..+..+. |+.|++++|.+..
T Consensus 79 -------l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 -------TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -------CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -------CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88899999999998844444455444 8899999888763
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.4e-12 Score=101.04 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=83.6
Q ss_pred cEEEcccC-cccCcCCccccCCCCccEEeccC-CcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561 27 ESLHLHRN-HLSGAIPLSLQNGTHFEVLDLRE-NAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG 104 (190)
Q Consensus 27 ~~l~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 104 (190)
..++++++ .++ .+|. +..+++|+.|++++ |.+.+..+..+. ++++|++|+|++|++++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~------------------~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLR------------------GLGELRNLTIVKSGLRF 70 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSC------------------SCCCCSEEECCSSCCCE
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhc------------------cccCCCEEECCCCccce
Confidence 45788888 898 6888 98999999999996 887765445444 49999999999999998
Q ss_pred cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
..|..|..+++|+.|+|++|.|++..+..+..++ |+.|++.+|.
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence 8888899999999999999999955555555555 8887777665
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.3e-13 Score=108.14 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=87.0
Q ss_pred CcceeccCCccccCCCcccC-----CCCCCcEEEcccCcccCcCCccc-cCCCCccEEeccCCcccCCCcHHHHHHHHHH
Q 039561 2 LQQGLKIQHKFSRSFPTSTG-----ALSSLESLHLHRNHLSGAIPLSL-QNGTHFEVLDLRENAFIRDVPKWIKKSLLAL 75 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~-----~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l 75 (190)
|++|++++|.++......+. ..++|++|++++|.++......+ ..+++|+.|++++|.+.......+...+.
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~-- 151 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL-- 151 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH--
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH--
Confidence 67888888888754322222 23688899999998863222222 23457889999998876544444433111
Q ss_pred HhhcCCcccccCCCCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCC
Q 039561 76 FMMKGKAFEYSTNLNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSA 147 (190)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~ 147 (190)
...+.|++|++++|.++.. ++..+..++.|++|++++|.+++. ++..+...++|+.|++++
T Consensus 152 -----------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 152 -----------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp -----------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred -----------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 1246788888888888642 344446677888888888887642 244566677888777777
Q ss_pred Cc
Q 039561 148 NH 149 (190)
Q Consensus 148 N~ 149 (190)
|.
T Consensus 221 N~ 222 (372)
T 3un9_A 221 NG 222 (372)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=1.2e-12 Score=102.56 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=95.2
Q ss_pred CCcceeccCCccccCCCcccC-CCCCCcEEEcccCcccCcCCccc-----cCCCCccEEeccCCcccCCCcHHHHHHHHH
Q 039561 1 MLQQGLKIQHKFSRSFPTSTG-ALSSLESLHLHRNHLSGAIPLSL-----QNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~ 74 (190)
.|++|++++|.++......+. .+++|++|++++|.++..-...+ ...+.|+.|++++|.+.......+...+
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-- 179 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-- 179 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH--
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH--
Confidence 367899999998754322222 35789999999999973322222 2467899999999997653333333211
Q ss_pred HHhhcCCcccccCCCCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCC
Q 039561 75 LFMMKGKAFEYSTNLNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFS 146 (190)
Q Consensus 75 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~ 146 (190)
...++|++|++++|.+++. ++..+...+.|+.|++++|.+++. +...+...++|+.|+++
T Consensus 180 ------------~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 180 ------------AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp ------------HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred ------------hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 2378899999999999743 355667778999999999999853 33445567889977766
Q ss_pred CCc
Q 039561 147 ANH 149 (190)
Q Consensus 147 ~N~ 149 (190)
+|.
T Consensus 248 ~N~ 250 (372)
T 3un9_A 248 FNE 250 (372)
T ss_dssp TSS
T ss_pred CCC
Confidence 665
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.08 E-value=5.5e-11 Score=97.91 Aligned_cols=97 Identities=12% Similarity=-0.026 Sum_probs=54.5
Q ss_pred ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCc--------------
Q 039561 85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANH-------------- 149 (190)
Q Consensus 85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~-------------- 149 (190)
.+..+++|+.++++++.. +.+|..+..+++|+.|++++|.+++... ..+..+++|+.|+++++-
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 334455555555555432 2455556666777777777777654333 335677777777776332
Q ss_pred --eEEee-----------cccccccCCcc-c-cccccccccccCCccc
Q 039561 150 --YLNLS-----------NNNLTGEIPSG-I-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 150 --~l~l~-----------~N~l~g~~p~~-~-~~~~l~~~~~~~n~l~ 182 (190)
+|+++ .|.+++..... . .+.+++.+.+..|.+.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 67777 35555332221 2 3566666666555444
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.4e-09 Score=82.26 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCC-EEeCCCCceEEeecccccccCCcc-c
Q 039561 89 LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLE-SIDFSANHYLNLSNNNLTGEIPSG-I 166 (190)
Q Consensus 89 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~l~l~~N~~l~l~~N~l~g~~p~~-~ 166 (190)
+++|+.+++++|++....+..|.++.+|+.+++++| ++...+.+|..+.+|+ .+++.++ ++ .|++. +
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---------l~-~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---------VT-AIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---------CC-EECTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---------ce-EEchhhh
Confidence 678999999999888555567899999999999988 7656667899999999 8886552 22 22221 1
Q ss_pred -cccccccccccCCcccCC
Q 039561 167 -QLQGFHQSRFAGSELCGA 184 (190)
Q Consensus 167 -~~~~l~~~~~~~n~l~~~ 184 (190)
+..+|+.+.+.+|.+...
T Consensus 294 ~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp TTCTTEEEEEECSSCCCEE
T ss_pred hCCccCCEEEeCCCccCcc
Confidence 345566666655544433
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.03 E-value=6.2e-11 Score=97.60 Aligned_cols=182 Identities=12% Similarity=0.006 Sum_probs=112.4
Q ss_pred CCcceeccCCcccc----CCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC---CCcHHHHHHHH
Q 039561 1 MLQQGLKIQHKFSR----SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR---DVPKWIKKSLL 73 (190)
Q Consensus 1 ~L~~L~l~~n~l~~----~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~p~~~~~~~~ 73 (190)
+|++|++++|.+++ .++..+..+++|++|++++|.+. .++..+..+++|+.|+++...... ..+..+. .++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~ 270 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FPR 270 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CCT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhh-ccc
Confidence 47889999988873 23444557889999999998887 466666777788888776432110 0000000 011
Q ss_pred HHHhh------cCCcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCC
Q 039561 74 ALFMM------KGKAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFS 146 (190)
Q Consensus 74 ~l~~~------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~ 146 (190)
+|..+ ...++..+..+++|++|++++|.+++... ..+..+++|+.|+++++...+.++.....+++|+.|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 11111 12234455568889999999888764333 335778888888888433333344444667788888888
Q ss_pred C-----------Cc-----------------eEEeecccccccCCccc--ccccccccccc----CCcccCC
Q 039561 147 A-----------NH-----------------YLNLSNNNLTGEIPSGI--QLQGFHQSRFA----GSELCGA 184 (190)
Q Consensus 147 ~-----------N~-----------------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~----~n~l~~~ 184 (190)
+ |. +|+++.|.+++..+..+ ...+++.+.+. .|.+++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 3 32 68888888876655554 25667777764 3455544
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.1e-09 Score=84.27 Aligned_cols=167 Identities=9% Similarity=0.014 Sum_probs=91.9
Q ss_pred CCcceeccCCccc--------------------cCCCcccCC--------CCCCcEEEcccCcccCcCCccccCCCCccE
Q 039561 1 MLQQGLKIQHKFS--------------------RSFPTSTGA--------LSSLESLHLHRNHLSGAIPLSLQNGTHFEV 52 (190)
Q Consensus 1 ~L~~L~l~~n~l~--------------------~~~p~~l~~--------l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 52 (190)
+|++|++++|++. ......|.. +++|+.+.+++ .++..-+..|..+++|+.
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 4788999999887 111234556 89999999998 777444567888999999
Q ss_pred EeccCCcccCCCcHHHHHHHHHHHhhcCC----------c-ccccCCCCCCc-EEEc-----------------------
Q 039561 53 LDLRENAFIRDVPKWIKKSLLALFMMKGK----------A-FEYSTNLNVLR-VIEL----------------------- 97 (190)
Q Consensus 53 L~l~~n~~~~~~p~~~~~~~~~l~~~~~~----------~-~~~~~~~~~L~-~L~l----------------------- 97 (190)
+++++|.+....+..+.. ...+..+... + ...+..+..++ .+.+
T Consensus 129 l~l~~n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 129 CQIRKKTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEBCCSSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred EEcCCCCccccchhhhcC-CCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999998864322222211 1111000000 0 01111122222 1111
Q ss_pred --cCCeecccCCccC-CCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccCCccccccccc-c
Q 039561 98 --SKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFH-Q 173 (190)
Q Consensus 98 --~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~~~~~~l~-~ 173 (190)
.++-.. .-...+ ..+++|+.+++++|.++...+..|..+++|+.+++.+| .-.+....|. +..+|+ .
T Consensus 208 ~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~-------~~~~L~~~ 278 (329)
T 3sb4_A 208 TIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS-------NCGRLAGT 278 (329)
T ss_dssp EEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------TCTTCCEE
T ss_pred EEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh-------CChhccEE
Confidence 111000 000000 12689999999999998555567999999998776554 2223333332 455666 6
Q ss_pred ccccC
Q 039561 174 SRFAG 178 (190)
Q Consensus 174 ~~~~~ 178 (190)
+.+.+
T Consensus 279 l~l~~ 283 (329)
T 3sb4_A 279 LELPA 283 (329)
T ss_dssp EEECT
T ss_pred EEEcc
Confidence 66655
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=2.3e-11 Score=100.13 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCCCCcEEEcccCcccCcCCcccc-CCCCccEEeccCC
Q 039561 22 ALSSLESLHLHRNHLSGAIPLSLQ-NGTHFEVLDLREN 58 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n 58 (190)
.+++|++|++++|.+++..+..+. .+++|+.|++++|
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 456777777777776644443443 4667777777776
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=5.9e-10 Score=78.94 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=81.1
Q ss_pred ccCCCCCCcEEEcccC-cccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCc
Q 039561 19 STGALSSLESLHLHRN-HLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLR 93 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~ 93 (190)
.+...+.|++|++++| .++.. +...+...+.|++|++++|.+.......+...++. .+.|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--------------n~~L~ 96 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV--------------NNTLK 96 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH--------------CSSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh--------------CCCcC
Confidence 4556788999999999 87622 33455667889999999999765444344432322 67899
Q ss_pred EEEccCCeeccc----CCccCCCCCCCcEEEc--ccCcceec----cCccccCCCCCCEEeCCCC
Q 039561 94 VIELSKNNFLGE----IAKGVTNPGASQTLNL--SQNSFSRT----IPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 94 ~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~l~l~~N 148 (190)
+|++++|.+++. +...+...+.|+.|++ ++|.++.. +...+...++|+.|++++|
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 999999999753 4556677788999999 88988753 2334555677886664443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.75 E-value=1.4e-10 Score=95.49 Aligned_cols=55 Identities=9% Similarity=-0.063 Sum_probs=35.3
Q ss_pred CCcceeccCCccccCC-CcccCCCCCCcEEEcccCcccCc-CCccccCCCCccEEecc
Q 039561 1 MLQQGLKIQHKFSRSF-PTSTGALSSLESLHLHRNHLSGA-IPLSLQNGTHFEVLDLR 56 (190)
Q Consensus 1 ~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~ 56 (190)
.|++|++++|.++... ...+..+++|++|++++| ++.. ++.....+++|+.|++.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 3788999998876532 223557888999999887 4311 22222346778888773
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=8.6e-10 Score=78.08 Aligned_cols=113 Identities=6% Similarity=-0.014 Sum_probs=84.4
Q ss_pred CCcceeccCC-ccccC----CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561 1 MLQQGLKIQH-KFSRS----FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71 (190)
Q Consensus 1 ~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 71 (190)
+|++|++++| .+... +...+...++|++|++++|.++.. +...+...+.|++|++++|.+.......+..
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~- 115 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE- 115 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH-
Confidence 4788999999 88743 344566789999999999999732 3344555688999999999987544344433
Q ss_pred HHHHHhhcCCcccccCCCCCCcEEEc--cCCeeccc----CCccCCCCCCCcEEEcccCcce
Q 039561 72 LLALFMMKGKAFEYSTNLNVLRVIEL--SKNNFLGE----IAKGVTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 127 (190)
.+...+.|++|++ ++|.++.. +...+...+.|+.|++++|.+.
T Consensus 116 -------------~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 -------------ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -------------GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -------------HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3334778999999 88999754 3344556689999999999886
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=1.8e-07 Score=72.90 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=60.2
Q ss_pred cccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561 18 TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL 97 (190)
Q Consensus 18 ~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l 97 (190)
..+..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.......+.. ..+++|+.|+|
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~----------------~~lp~L~~L~L 226 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG----------------SDLPNLEKLVL 226 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH----------------SBCTTCCEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH----------------ccCCCCcEEEE
Confidence 34556789999999887422 2333 3 3778999999877754322222221 13667777776
Q ss_pred cC--Ceeccc-----CCccC--CCCCCCcEEEcccCcceeccCcccc---CCCCCCEEeCCCC
Q 039561 98 SK--NNFLGE-----IAKGV--TNPGASQTLNLSQNSFSRTIPESIG---SMKSLESIDFSAN 148 (190)
Q Consensus 98 ~~--n~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~l~---~l~~L~~l~l~~N 148 (190)
+. +...+. +...+ ..+++|++|++++|.+++..+..+. .+++|+.|+++.|
T Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 42 111111 11112 2356777777777776543333222 3556665554444
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=1.8e-06 Score=68.22 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=30.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccC
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRE 57 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 57 (190)
|+.+.+.. .+...-...|.++++|+.++++.|.++ .++........|+.+.+..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCC
Confidence 44555543 344433445667777777777777666 3443333345566666553
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=2e-07 Score=69.60 Aligned_cols=66 Identities=26% Similarity=0.340 Sum_probs=44.8
Q ss_pred CCCCcEEEccCCeecc--cCCccCCCCCCCcEEEcccCcceeccCccccCCC--CCCEEeCCCCceEEeecccccccCCc
Q 039561 89 LNVLRVIELSKNNFLG--EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK--SLESIDFSANHYLNLSNNNLTGEIPS 164 (190)
Q Consensus 89 ~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~l~l~~N~~l~l~~N~l~g~~p~ 164 (190)
++.|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..+..++ +|+ +|++++|.+++.+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~--------~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE--------ELWLDGNSLCDTFRD 238 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS--------EEECTTSTTGGGCSS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc--------eEEccCCcCccccCc
Confidence 6778888888888875 3445556778888888888888743 3344444 444 555777777776663
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=3.6e-08 Score=76.88 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=83.6
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCcccc--CCCCccEEeccC--CcccCCC-cHHHHHHHHHHH
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQ--NGTHFEVLDLRE--NAFIRDV-PKWIKKSLLALF 76 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~~-p~~~~~~~~~l~ 76 (190)
|+.|.+++|.-. .+++ +. +++|+.|.+..+.++......+. .+++|+.|+++. +...+.. ...+..
T Consensus 174 L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~------ 244 (362)
T 2ra8_A 174 LNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP------ 244 (362)
T ss_dssp CCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG------
T ss_pred CcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH------
Confidence 678888877311 2343 33 78999999998887633222332 678999999864 2222211 111110
Q ss_pred hhcCCcccccCCCCCCcEEEccCCeecccCCccC---CCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc
Q 039561 77 MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV---TNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 77 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~ 149 (190)
.. ....+++|++|++.+|.+.+..+..+ ..++.|++|+++.|.+++. ++..+..+++|+.|++++|.
T Consensus 245 -----~l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 245 -----LF-SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -----GS-CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -----HH-hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 00 00237899999999998864332222 3578999999999998863 34444567889988877765
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=2.6e-06 Score=67.22 Aligned_cols=173 Identities=10% Similarity=0.086 Sum_probs=94.0
Q ss_pred CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c
Q 039561 2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K 79 (190)
Q Consensus 2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~ 79 (190)
|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++..-+..|..+++|+.+++..|.+.. ++...+. ...|..+ .
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEe-ecccCEEEeC
Confidence 445555544 44423334555 5788888875 5553444667788888888888876542 3322111 1111111 0
Q ss_pred CC----cccccCCCCCCcEEEccC---------------------CeecccCCccCCCCCCCcEEEcccCcce-----ec
Q 039561 80 GK----AFEYSTNLNVLRVIELSK---------------------NNFLGEIAKGVTNPGASQTLNLSQNSFS-----RT 129 (190)
Q Consensus 80 ~~----~~~~~~~~~~L~~L~l~~---------------------n~l~~~~p~~~~~l~~L~~L~l~~n~l~-----~~ 129 (190)
.. -..+|.++++|+.+.+.. +.+.......|.++.+|+.+++.+|.+. ..
T Consensus 212 ~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 212 VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred CchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 00 012333444444444432 2233233456777788888888776654 24
Q ss_pred cCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCcc-c-cccccccccccCCccc
Q 039561 130 IPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSG-I-QLQGFHQSRFAGSELC 182 (190)
Q Consensus 130 ~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~-~-~~~~l~~~~~~~n~l~ 182 (190)
.+..|..+++|+.+++..+- .+++..| ++ .++.. + .. +|+.+.+.+|.+.
T Consensus 292 ~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred CHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 45567778888888777442 4555433 44 33332 3 44 7788888877443
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=9.3e-07 Score=65.92 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=50.2
Q ss_pred CCcceeccCCcccc--CCCcccCCCCCCcEEEcccCcccCcCCccccCCC--CccEEeccCCcccCCCc
Q 039561 1 MLQQGLKIQHKFSR--SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGT--HFEVLDLRENAFIRDVP 65 (190)
Q Consensus 1 ~L~~L~l~~n~l~~--~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~p 65 (190)
.|++|++++|.+++ .+|..+..+++|+.|++++|.+++. ..+..+. .|+.|++++|.+.+.+|
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 37899999999998 3455667899999999999999853 2233333 89999999999887666
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.3e-06 Score=59.71 Aligned_cols=88 Identities=8% Similarity=-0.033 Sum_probs=51.2
Q ss_pred CCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-ccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe-
Q 039561 24 SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-FIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN- 101 (190)
Q Consensus 24 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~- 101 (190)
..|+.|+++++.++..--..+..+++|+.|++++|. +++..-..+.. ++. ..++|++|++++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-~~~-------------~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-LEN-------------LQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT-CHH-------------HHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh-ccc-------------ccCCCCEEEcCCCCc
Confidence 457788888887763333445677788888888775 33221112211 000 01357778887764
Q ss_pred ecccCCccCCCCCCCcEEEcccCc
Q 039561 102 FLGEIAKGVTNPGASQTLNLSQNS 125 (190)
Q Consensus 102 l~~~~p~~~~~l~~L~~L~l~~n~ 125 (190)
+++..-..+..+++|+.|+++++.
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCHHHHHHHhcCCCCCEEECCCCC
Confidence 664433445667777777777764
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=8.2e-07 Score=61.99 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe-ecccCCccCCCC----C
Q 039561 40 IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNP----G 114 (190)
Q Consensus 40 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l----~ 114 (190)
+|.....-..|+.||++++.++...-..+. .+++|+.|+|++|. +++..-..+..+ +
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~------------------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~ 114 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHME------------------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGT------------------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhc------------------CCCCCCEEEeCCCCccCHHHHHHHHhcccccC
Confidence 343332335799999999987654333333 38999999999985 765443445543 4
Q ss_pred CCcEEEcccCc-ceeccCccccCCCCCCEEeCCCCc
Q 039561 115 ASQTLNLSQNS-FSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 115 ~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.|+.|++++|. +++.--..+..+++|+.|+++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 79999999985 876545567788999988877765
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.86 E-value=8.4e-06 Score=57.89 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCCCCCcEEEcccC-cccC----cCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEE
Q 039561 21 GALSSLESLHLHRN-HLSG----AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVI 95 (190)
Q Consensus 21 ~~l~~L~~l~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L 95 (190)
.+-+.|+.|++++| .+.. .+...+..-+.|+.|++++|.+....-..+...++. -..|+.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~--------------N~tL~~L 103 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET--------------SPSLRVL 103 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH--------------CSSCCEE
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc--------------CCccCeE
Confidence 34567888888775 6641 133445556678888888888765443444433332 5678888
Q ss_pred EccCCeeccc----CCccCCCCCCCcEEEcccC---cceec----cCccccCCCCCCEEeCCCC
Q 039561 96 ELSKNNFLGE----IAKGVTNPGASQTLNLSQN---SFSRT----IPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 96 ~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n---~l~~~----~p~~l~~l~~L~~l~l~~N 148 (190)
+|++|.|+.. +.+.+..-+.|+.|++++| .+... +.+.+..-++|+.++++.|
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 8888888743 3344555667888888754 33321 2334445566776665443
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=6.8e-06 Score=58.36 Aligned_cols=113 Identities=9% Similarity=0.113 Sum_probs=78.4
Q ss_pred CCcceeccCC-ccccC----CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561 1 MLQQGLKIQH-KFSRS----FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71 (190)
Q Consensus 1 ~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 71 (190)
+|++|++++| .+... +.+.+..-+.|+.|++++|.++.. +.+.+..-+.|+.|++++|.+....-..+..
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~- 120 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR- 120 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH-
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH-
Confidence 4788999985 66532 344566778999999999999822 3334445578999999999987544444443
Q ss_pred HHHHHhhcCCcccccCCCCCCcEEEccCC---eeccc----CCccCCCCCCCcEEEcccCcce
Q 039561 72 LLALFMMKGKAFEYSTNLNVLRVIELSKN---NFLGE----IAKGVTNPGASQTLNLSQNSFS 127 (190)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 127 (190)
.+..-..|++|+++++ .+... +...+..-+.|+.|+++.|.+.
T Consensus 121 -------------aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 -------------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp -------------HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred -------------HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2233567999999865 44422 3444556688999999877653
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.00095 Score=44.05 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=44.4
Q ss_pred ceeccCCccc-cCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC
Q 039561 4 QGLKIQHKFS-RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR 62 (190)
Q Consensus 4 ~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 62 (190)
+++.++++++ ..+|..+. +++++|++++|.++..-+..|..++.|++|++++|.+.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5677888887 23775433 479999999999995445667789999999999998753
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.02 E-value=0.0037 Score=48.45 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=36.4
Q ss_pred CCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCC
Q 039561 87 TNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSA 147 (190)
Q Consensus 87 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~ 147 (190)
.++.+|+.+.+..+.+.......|.++.+|+.+.+..+ ++..-..+|..+.+|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 34667777777666555333456667777777777544 4423345666777777666543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.0042 Score=48.49 Aligned_cols=109 Identities=9% Similarity=0.195 Sum_probs=67.6
Q ss_pred ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561 19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 98 (190)
+|.....|+.+.+..+..+ .-...|..++.|+.+.+..+- . .++. .+|.++.+|+.+.+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i-~-~I~~-----------------~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRI-T-ELPE-----------------SVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC-C-EECT-----------------TTTTTCTTCCEEECC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCCcc-c-ccCc-----------------eeecCCCCcCEEEeC
Confidence 4555667777777655433 334456666777777765321 2 2222 133447888888886
Q ss_pred CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
.+ +......+|.++.+|+.+.+..+ ++..-..+|..+.+|+.+++.++.
T Consensus 320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 54 44344567888888998888655 553445678888888877765553
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0018 Score=42.73 Aligned_cols=55 Identities=13% Similarity=0.291 Sum_probs=39.5
Q ss_pred cEEEccCCeec-ccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561 93 RVIELSKNNFL-GEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149 (190)
Q Consensus 93 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~ 149 (190)
..++.+++.++ ..+|..+. ..++.|+|++|.|+...+..|..+++|+.+++++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35677777774 25565443 468899999999985445567888889888877775
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.67 E-value=0.0076 Score=47.02 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=59.5
Q ss_pred ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561 19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS 98 (190)
Q Consensus 19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 98 (190)
.+.....++.+.+..+... .....|.....++......+.+... .+ ..+.+|+.+.+.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~---~F------------------~~~~~L~~i~l~ 305 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEK---TF------------------YGCSSLTEVKLL 305 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTT---TT------------------TTCTTCCEEEEC
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeeccc---cc------------------cccccccccccc
Confidence 4567788888888777554 4455666777777777665443211 11 125556666654
Q ss_pred CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
.+ +......+|.++.+|+.+++..+ ++..-..+|..+.+|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 33 33223345566666666666543 44233445666666666555433
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.49 E-value=0.068 Score=41.58 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe
Q 039561 22 ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN 101 (190)
Q Consensus 22 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 101 (190)
....|+.+.+....-. .-...+..+..++.+.+..+... .....+ ..+..++.+......
T Consensus 228 ~~~~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F------------------~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLR-IGGSLF------------------YNCSGLKKVIYGSVI 287 (394)
T ss_dssp TTCCCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCE-ECSCTT------------------TTCTTCCEEEECSSE
T ss_pred ccCCCceEEECCCcee-cccccccccccceeEEcCCCcce-eecccc------------------ccccccceeccCcee
Confidence 3455666665443211 22334555566666666554321 111111 225556655555443
Q ss_pred ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561 102 FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148 (190)
Q Consensus 102 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N 148 (190)
+. ...+..+.+|+.+.+..+ ++..-..+|..+.+|+.+++..+
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 32 234556666776666544 43233445666666766666433
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.36 E-value=0.013 Score=45.62 Aligned_cols=106 Identities=9% Similarity=0.117 Sum_probs=69.1
Q ss_pred cccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561 18 TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL 97 (190)
Q Consensus 18 ~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l 97 (190)
..+.+.+.|+.+.+. +.++..-...|..+.+|+.+++..+- . .+++ .+|.++.+|+.+.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v-~-~I~~-----------------~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGI-T-QILD-----------------DAFAGCEQLERIAI 341 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTC-C-EECT-----------------TTTTTCTTCCEEEE
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcc-c-EehH-----------------hHhhCCCCCCEEEE
Confidence 356778999999996 44552334567888999999997652 2 2222 13345899999999
Q ss_pred cCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCC
Q 039561 98 SKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSA 147 (190)
Q Consensus 98 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~ 147 (190)
..+ +......+|.++.+|+.+++.++... . ..+..+.+|+.+.+..
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC-------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCC
Confidence 654 55344568999999999999887654 1 3566677788766543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.19 E-value=0.018 Score=44.45 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=35.4
Q ss_pred ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCC
Q 039561 85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138 (190)
Q Consensus 85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 138 (190)
+|.++.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++..-..+|..+.
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 3455899999999654 55344567899999999988655 4423345565554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.54 E-value=23 Score=21.54 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=16.9
Q ss_pred ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeC
Q 039561 108 KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDF 145 (190)
Q Consensus 108 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l 145 (190)
..|.++.+|+.+.+..+ ++..-..+|..+.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 34445555555555443 22122334555555554443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.32 E-value=61 Score=19.58 Aligned_cols=51 Identities=10% Similarity=-0.026 Sum_probs=35.9
Q ss_pred cCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc
Q 039561 8 IQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA 59 (190)
Q Consensus 8 ~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 59 (190)
.+..++..-...|.+..+|+.+.+..+ ++..-...|..+.+|+.+.+....
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 344556544457888999999999775 342445678889999998887644
Done!