BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039563
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 210/458 (45%), Gaps = 67/458 (14%)
Query: 19 TPHHLKTHKLSLLDQLAPDIYLPIVLFYDSS--SRVDDKXXXXXXXXXXXXXRRLKNSLS 76
TP LK +K+S LDQL ++P +LFY + S +D + LK SLS
Sbjct: 19 TPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDP----------AQTSQHLKQSLS 68
Query: 77 KTLTHYYPFAGRVLLKDNYVIDCDDSGVPVVETLVGSNMFDVL-NFPEMDTLEQLLPFN- 134
K LTH+YP AGR+ + N +DC+DSGVP VE V + + + N E++ L+Q LP
Sbjct: 69 KVLTHFYPLAGRINV--NSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAA 126
Query: 135 -PNKKHLSTHDVTVAVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKNWAKLNYSNDDHD 193
P K DV +AV+I++F CGG A+G N H +AD + F+ W +
Sbjct: 127 YPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIV 186
Query: 194 I-NIDVSTKYAVVDCTNIFPPNKEISGYSRSINEWQRSTECVTKRFRFNGSKIAALRREM 252
+ N D++ ++ FPP +E V KRF F+ KI ALR +
Sbjct: 187 LPNFDLAARH--------FPPVDNTPSPELVPDE-----NVVMKRFVFDKEKIGALRAQA 233
Query: 253 IMEKASLNLQYRPSRFEAVCGLIWGALLAMDREKHIDSTSTIATIPVNLRNRMNPPLPEG 312
N SR + V IW ++ + R K+ + VNLR+RMNPPLP
Sbjct: 234 SSASEEKNF----SRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHY 289
Query: 313 CIGN----LFHAVTCTENNEAGDGHYNKSTLARNVREFTKMVSDDFVRKVYQDGGVVFVN 368
+GN LF AV + + D L +R + DD ++ + ++
Sbjct: 290 AMGNIATLLFAAVDAEWDKDFPD-------LIGPLRTSLEKTEDDHNHELLKGMTCLYEL 342
Query: 369 QYKEAVEELLKDGTNNNNTTNSVRMFGFSGPIGLQYYGIDFGWGKPL-WVTTVMRLNNVA 427
+ +E + F+ L +Y +DFGWGKPL TT N A
Sbjct: 343 EPQE--------------------LLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAA 382
Query: 428 MLLDTCDGKGVEAWVGLPINDMSKFEQDLGILAYASFT 465
+L+DT G GVEAW+ + ++M+ +L L + F+
Sbjct: 383 LLMDTRSGDGVEAWLPMAEDEMAMLPVELLSLVDSDFS 420
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 169/408 (41%), Gaps = 65/408 (15%)
Query: 31 LDQLAPDIYLPIVLFY---DSSSRVDDKXXXXXXXXXXXXXRRLKNSLSKTLTHYYPFAG 87
+D + P+ + P V FY SS+ D K LK++LS+ L +YP AG
Sbjct: 32 VDLVVPNFHTPSVYFYRPTGSSNFFDAKV--------------LKDALSRALVPFYPMAG 77
Query: 88 RVLLKDN--YVIDCDDSGVPVVETLVGSNMFDVLNFPEMDTLEQLLPFNPNKKHLSTHDV 145
R+ ++ I+C+ GV VE + D +F L +L+P + +S++ +
Sbjct: 78 RLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYAL 137
Query: 146 TVAVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKNWAKLNYSNDDHDINIDVSTKYAVV 205
V +Q+ YF CGGV++G RH ADG + + FI +W+ D +DV T +
Sbjct: 138 LV-LQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWS-------DMARGLDV-TLPPFI 188
Query: 206 DCTNIF---PPNKEIS----------GYSRSINEWQRSTECVTKRFRFNGSKIAALRREM 252
D T + PP + S E F+ +I+AL+ +
Sbjct: 189 DRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKS 248
Query: 253 IMEKASLNLQYRPSRFEAVCGLIWGALLAMDREKHIDSTSTIATIPVNLRNRMNPPLPEG 312
+ +++ S +E + G +W R +D + + I + R R+ P LP G
Sbjct: 249 KEDGNTISY----SSYEMLAGHVWRCACKA-RGLEVDQGTKL-YIATDGRARLRPSLPPG 302
Query: 313 CIGNLFHAVTCTENNEAGDGHYNKS-TLARNVREFTKMVSDDFVRKVYQDGGVVFVNQYK 371
GN+ T T AGD + A + + + +D++R Y
Sbjct: 303 YFGNVI--FTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSAL---------DYL 351
Query: 372 EAVEEL--LKDGTNNNNTTNSVRMFGFSGPIGLQYYGIDFGWGKPLWV 417
E +L L G + N G + + L + DFGWG+P+++
Sbjct: 352 ELQPDLKALVRGAHTFKXPN----LGITSWVRLPIHDADFGWGRPIFM 395
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 55/403 (13%)
Query: 31 LDQLAPDIYLPIVLFY---DSSSRVDDKXXXXXXXXXXXXXRRLKNSLSKTLTHYYPFAG 87
+D + P+ + P V FY SS+ D K LK++LS+ L +YP AG
Sbjct: 29 VDLVVPNFHTPSVYFYRPTGSSNFFDAKV--------------LKDALSRALVPFYPMAG 74
Query: 88 RVLLKDN--YVIDCDDSGVPVVETLVGSNMFDVLNFPEMDTLEQLLPFNPNKKHLSTHDV 145
R+ ++ I+C+ GV VE + D +F L +L+P + +S++ +
Sbjct: 75 RLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYAL 134
Query: 146 TVAVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKNWAKLNYSND-DHDINIDVSTKYAV 204
V +Q+ YF CGGV++G RH ADG + + FI +W+ + D ID + A
Sbjct: 135 LV-LQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRAR 193
Query: 205 VDCTNIF-------PPNKEISGYSRSINEWQRSTECVTKRFRFNGSKIAALRREMIMEKA 257
F PP ++S + + E F+ +I+AL+ + +
Sbjct: 194 DPPQPQFQHIEYQPPPALKVSPQTAKSDS---VPETAVSIFKLTREQISALKAKSKEDGN 250
Query: 258 SLNLQYRPSRFEAVCGLIWGALLAMDREKHIDSTSTIATIPVNLRNRMNPPLPEGCIGNL 317
+++ S +E + G +W R +D + + I + R R+ P LP G GN+
Sbjct: 251 TISY----SSYEMLAGHVWRCACKA-RGLEVDQGTKL-YIATDGRARLRPSLPPGYFGNV 304
Query: 318 FHAVTCTENNEAGDGHYNKS-TLARNVREFTKMVSDDFVRKVYQDGGVVFVNQYKEAVEE 376
T T AGD + A + + + +D++R Y E +
Sbjct: 305 I--FTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSAL---------DYLELQPD 353
Query: 377 L--LKDGTNNNNTTNSVRMFGFSGPIGLQYYGIDFGWGKPLWV 417
L L G + N G + + L + DFGWG+P+++
Sbjct: 354 LKALVRGAHTFKCPN----LGITSWVRLPIHDADFGWGRPIFM 392
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 168/408 (41%), Gaps = 65/408 (15%)
Query: 31 LDQLAPDIYLPIVLFY---DSSSRVDDKXXXXXXXXXXXXXRRLKNSLSKTLTHYYPFAG 87
+D + P+ + P V FY SS+ D K LK++LS+ L +YP AG
Sbjct: 32 VDLVVPNFHTPSVYFYRPTGSSNFFDAKV--------------LKDALSRALVPFYPMAG 77
Query: 88 RVLLKDN--YVIDCDDSGVPVVETLVGSNMFDVLNFPEMDTLEQLLPFNPNKKHLSTHDV 145
R+ ++ I+C+ GV VE + D +F L +L+P + +S++ +
Sbjct: 78 RLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYAL 137
Query: 146 TVAVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKNWAKLNYSNDDHDINIDVSTKYAVV 205
V +Q+ YF GGV++G RH ADG + + FI +W+ D +DV T +
Sbjct: 138 LV-LQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWS-------DMARGLDV-TLPPFI 188
Query: 206 DCTNIF---PPNKEIS----------GYSRSINEWQRSTECVTKRFRFNGSKIAALRREM 252
D T + PP + S E F+ +I+AL+ +
Sbjct: 189 DRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKS 248
Query: 253 IMEKASLNLQYRPSRFEAVCGLIWGALLAMDREKHIDSTSTIATIPVNLRNRMNPPLPEG 312
+ +++ S +E + G +W R +D + + I + R R+ P LP G
Sbjct: 249 KEDGNTISY----SSYEMLAGHVWRCACKA-RGLEVDQGTKL-YIATDGRARLRPSLPPG 302
Query: 313 CIGNLFHAVTCTENNEAGDGHYNKS-TLARNVREFTKMVSDDFVRKVYQDGGVVFVNQYK 371
GN+ T T AGD + A + + + +D++R Y
Sbjct: 303 YFGNVI--FTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSAL---------DYL 351
Query: 372 EAVEEL--LKDGTNNNNTTNSVRMFGFSGPIGLQYYGIDFGWGKPLWV 417
E +L L G + N G + + L + DFGWG+P+++
Sbjct: 352 ELQPDLKALVRGAHTFKXPN----LGITSWVRLPIHDADFGWGRPIFM 395
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 167/417 (40%), Gaps = 54/417 (12%)
Query: 71 LKNSLSKTLTHYYPFAGRVLL-------KDNYVIDCDDSGVPVVETLVGSNMFDVLNFPE 123
+K+SLS TL H+YPF G++++ + ++ D V E + N +
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 124 MDTLEQLLPFNPNKKHLS--THDVTVAVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKN 181
D L+P LS +VQ+ F G+A+G H + D + F+K
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKA 184
Query: 182 WAKLNYSNDDHDINIDVSTKYAVVDCTNIFPPNKEISGYSRSINEWQRSTECVTKRFRFN 241
W + S ++ + + T+ + D +P E Y + + + VT+
Sbjct: 185 WTSIARSGNNDESFLANGTR-PLYDRIIKYPMLDE--AYLKRAKVESFNEDYVTQSLAGP 241
Query: 242 GSKIAALRREMIMEKASLN------------LQYRPSRFEAVCGLIWGALLAMDREKHID 289
K LR I+ +A +N L+Y S F C IW + +A R +
Sbjct: 242 SDK---LRATFILTRAVINQLKDRVLAQLPTLEYV-SSFTVACAYIW-SCIAKSRNDKLQ 296
Query: 290 STSTIATIPVNLRNRMNPPLPEGCIGNLFHAVTCTENNEAGDGHYNKSTLARNVRE-FTK 348
+ P++ R RM PP+P GN G T A+ + E K
Sbjct: 297 ----LFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHK 352
Query: 349 MVSDDFVRKVYQDGGVVFVNQYKEAVEELLKDGTNNNNTTNSVRMFGFSGPIGLQYYGID 408
++D Y+DG + E+ +L+ +G M SG L++Y +D
Sbjct: 353 TLTD------YKDG---VLKDDMESFNDLVSEGMPTT-------MTWVSGTPKLRFYDMD 396
Query: 409 FGWGKPLWVTTVMRLNNVAMLLDTCDGKGVEAWVGLPIN--DMSKFEQ--DLGILAY 461
FGWGKP + TV +N A+ +++C + +G+ I+ M F D G+ AY
Sbjct: 397 FGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFDDGLKAY 453
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 158/399 (39%), Gaps = 50/399 (12%)
Query: 71 LKNSLSKTLTHYYPFAGRVLL-------KDNYVIDCDDSGVPVVETLVGSNMFDVLNFPE 123
+K+SLS TL H+YPF G++++ + ++ D V E + N +
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 124 MDTLEQLLPFNPNKKHLS--THDVTVAVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKN 181
D L+P LS +VQ+ F G+A+G H + D + F+K
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKA 184
Query: 182 WAKLNYSNDDHDINIDVSTKYAVVDCTNIFPPNKEISGYSRSINEWQRSTECVTKRFRFN 241
W + S ++ + + T+ + D +P E Y + + + VT+
Sbjct: 185 WTSIARSGNNDESFLANGTR-PLYDRIIKYPXLDE--AYLKRAKVESFNEDYVTQSLAGP 241
Query: 242 GSKIAALRREMIMEKASLN------------LQYRPSRFEAVCGLIWGALLAMDREKHID 289
K LR I+ +A +N L+Y S F C IW + +A R +
Sbjct: 242 SDK---LRATFILTRAVINQLKDRVLAQLPTLEYV-SSFTVACAYIW-SCIAKSRNDKLQ 296
Query: 290 STSTIATIPVNLRNRMNPPLPEGCIGNLFHAVTCTENNEAGDGHYNKSTLARNVRE-FTK 348
+ P++ R R PP+P GN G T A+ + E K
Sbjct: 297 ----LFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHK 352
Query: 349 MVSDDFVRKVYQDGGVVFVNQYKEAVEELLKDGTNNNNTTNSVRMFGFSGPIGLQYYGID 408
++D Y+DG + E+ +L+ +G T SG L++Y D
Sbjct: 353 TLTD------YKDG---VLKDDXESFNDLVSEGXPTTXT-------WVSGTPKLRFYDXD 396
Query: 409 FGWGKPLWVTTVMRLNNVAMLLDTCDGKGVEAWVGLPIN 447
FGWGKP + TV +N A+ +++C + +G+ I+
Sbjct: 397 FGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCIS 435
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 67/376 (17%)
Query: 71 LKNSLSKTLTHYYPFAGRVLLKDNYVIDCDDSGVPVVETLVGSNMFDVLNFPEMDTLEQL 130
LK+SLS TL +Y P AG V ++ SG P + + G+++ + + + D L
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQDW------SGYPELRYVTGNSVSVIFSESDXD-FNYL 112
Query: 131 LPFNPNKKHLSTHDV----------------TVAVQINYFHCGGVAVGFNFRHIVADGAA 174
+ ++P H V +A+Q+ F G+++GF H+ DGA
Sbjct: 113 IGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGAT 172
Query: 175 AIGFIKNWAKLN-YSNDDHDINIDVSTKYAVVDCTNIFPPN---KEISGYSRSINEWQRS 230
+ F++ WA LN + D+ + + Y D + I PN I + +
Sbjct: 173 IVKFVRAWALLNKFGGDEQFLANEFIPFY---DRSVIKDPNGVGXSIWNEXKKYKHXXKX 229
Query: 231 TECVTKRFRFNGSKIAALRREMIMEKASLNLQYRP-----SRFEAVCGLIWGALL---AM 282
++ VT + G+ I + R I + +L L RP + F C +W ++ A
Sbjct: 230 SDVVTPPDKVRGTFI--ITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAA 287
Query: 283 DREKHIDSTSTIATIPVNLRNRMNPPLPEGCIGNLF--HAVTCTENNEAGDGHYNKSTLA 340
E+ ++ + R + NPPLP GN + + + AG + T+A
Sbjct: 288 TGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGF---TIA 344
Query: 341 RNVREFTKMVSDDFVRKVYQDGGVVFVNQYKEAVEELLKDGT--NNNNTTNSVRMFGFSG 398
+++ + +RK +D EE + G+ + ++ R +G
Sbjct: 345 ------VELIGEA-IRKRXKD-------------EEWILSGSWFKEYDKVDAKRSLSVAG 384
Query: 399 PIGLQYYGIDFGWGKP 414
L Y DFGWG+P
Sbjct: 385 SPKLDLYAADFGWGRP 400
>pdb|3ZF7|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 214
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 99 CDDSGVPVVETLVGSNMFDVLNFPEMDTLEQLLPFNPNKKHLSTHDVTVAVQINYFHCGG 158
C +S + V LVG +M V FP + + LP K L TV Q+ C G
Sbjct: 109 CSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLP----DKVLELQS-TVKFQLKKVLCLG 163
Query: 159 VAVG---FNFRHIVADGAAAIGFIKNWAKLNYSN 189
VG + + AI F+ + K N+ N
Sbjct: 164 TCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQN 197
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 148 AVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKNW------AKLNYSNDDHDINIDVSTK 201
A++ H G++F I D F K + A LN+S+D D I
Sbjct: 498 ALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDATDFKIPNDDS 557
Query: 202 YAVVDCTNIFPPNKEISGYSRSINEWQ 228
++ N P KE+ SR++ W+
Sbjct: 558 SFKLEFGNY--PKKEVDASSRTLKPWE 582
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 148 AVQINYFHCGGVAVGFNFRHIVADGAAAIGFIKNW------AKLNYSNDDHDINIDVSTK 201
A++ H G++F I D F K + A LN+S+D D I
Sbjct: 498 ALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDATDFKIPNDDS 557
Query: 202 YAVVDCTNIFPPNKEISGYSRSINEWQ 228
++ N P KE+ SR++ W+
Sbjct: 558 SFKLEFGNY--PKKEVDASSRTLKPWE 582
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,981,285
Number of Sequences: 62578
Number of extensions: 577464
Number of successful extensions: 1286
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 22
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)