BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039564
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 195/449 (43%), Gaps = 68/449 (15%)
Query: 26 NKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI- 84
N G +P L M+ L+LS N +G + S+ S+ TLDLSSN GPI
Sbjct: 328 NNFSGELPMDTL-LKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 85 ----PAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS--- 137
P + + N TG+IP + N S L L LS N LSG +P LG+ S
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 138 --------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
M L + + N L G IP L+NC L I L NN++
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
P W+G L L IL L +N+F G I +C L +DL+ N F G +P+ F+
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 244 --AMKFVNASQLRYMRNXXXXXXXXXXXXXXPHY-------------------------Y 276
A F+ + Y++N +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
S T N G M+ + +S N G IP I ++ L +L+L +N++ G IP
Sbjct: 624 TSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
GDL L LDLS+N G+IPQ ++ LT L ++S+NNL+GPIPE QF TF +
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 397 FDGNSGLCGKPLFKECENSEAPANEDQIA 425
F N GLCG PL C+ P+N D A
Sbjct: 734 FLNNPGLCGYPL-PRCD----PSNADGYA 757
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 172/392 (43%), Gaps = 57/392 (14%)
Query: 17 HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
+L+ LD+SSN IP ++Q +L++S N L+G D ++ + + L++S
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQ---HLDISGNKLSG-DFSRAISTCTELKL-LNIS 255
Query: 77 SNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICN-LSSLYILDLSDNNLSGELPRCLG 134
SN GPIP P K+ YL +++N TGEIP ++ +L LDLS N+ G +P G
Sbjct: 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 135 -------------NFS-----DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176
NFS DT + L ++D+S N G +P+SL N +
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-------- 367
Query: 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPK--LRIVDLSNNSFTGNL 234
+ L L L SNNF G I + C PK L+ + L NN FTG +
Sbjct: 368 ---------------ASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKI 410
Query: 235 PSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQMLSYEKIP 294
P C + Y+ + ++ Q L Y K
Sbjct: 411 PPTLSNCSELVSL--HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT- 467
Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
L +IL N GEIP+ ++N L +SL+NN L G IP G L L L LSNN
Sbjct: 468 --LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
FSG IP +L L + +++ N G IP A
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 162/398 (40%), Gaps = 102/398 (25%)
Query: 11 FLKQQKHLKALDLSSNKLHGNIPKW--------LLNPS------------MQNFSYLNLS 50
FL L+ LD+S NKL G+ + LLN S +++ YL+L+
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 51 KNSLTGFDQHPSVFPWSSGEFT-LDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGEIP 106
+N TG + P + T LDLS N G +P + +S NN +GE+P
Sbjct: 278 ENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 107 -SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMN--------------------GSN 145
+ + L +LDLS N SGELP L N S + + +
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 146 LGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205
L + + +N G+IP +L+NC+ L + L N + T P+ LG+LS+L L L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 206 GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXX 265
GEI + M + I+D N TG +PS C N
Sbjct: 456 GEIPQELMYVKTLETLILDF--NDLTGEIPSGLSNCTN---------------------- 491
Query: 266 XXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLS 325
L + LS+N GEIP I L+ L +L
Sbjct: 492 -------------------------------LNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 326 LANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
L+NN+ G+IP+ GD L LDL+ N F+G IP +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 181/422 (42%), Gaps = 59/422 (13%)
Query: 13 KQQKHLKALDLSSNKLHGNIPKW----------LLNPS---------------MQNFSYL 47
K L +LDLS N L G + LN S + + L
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 48 NLSKNSLTGFDQHPSVFPWSSGEFT-LDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEI 105
+LS NS++G + V GE L +S N + G + +L VS NN + I
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSD-TFMNGS--------------NLGIID 150
P ++ + S+L LD+S N LSG+ R + ++ +N S +L +
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275
Query: 151 MSHNLLQGRIPKSLAN-CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIK 209
++ N G IP L+ C L +DL N P + G+ S L+ L L SNNF GE+
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 210 EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXX 269
+ L+++DLS N F+G LP ++ ++ S N
Sbjct: 336 MDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS-----NNFSGPILPNLC 389
Query: 270 XXXPHYYYSLTMSNKGQMLSYEKIPYILT------AVILSSNGFHGEIPTSIANLKGLQV 323
+ L + N G KIP L+ ++ LS N G IP+S+ +L L+
Sbjct: 390 QNPKNTLQELYLQNNGFT---GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
L L N LEG IP + LE+L L N +G+IP L+ T L + ++S+N LTG I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 384 PE 385
P+
Sbjct: 507 PK 508
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 7 EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
E P+ L +L + LS+N+L G IPKW+ ++N + L LS NS +G P+
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSG--NIPAELGD 536
Query: 67 SSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICN--------------- 111
LDL++N G IPA K ++ N + G+ +I N
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 112 ---LSSLYILDLSDNNLSGELPRCLGNF-SDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167
+ S + LS N R G S TF N ++ +DMS+N+L G IPK + +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN 227
L I++LG+N I + P +G L L+IL L SN G I + L +DLSN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSN 713
Query: 228 NSFTGNLPS-KYFQCWNAMKFVN 249
N+ +G +P F+ + KF+N
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLN 736
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 156/357 (43%), Gaps = 45/357 (12%)
Query: 62 SVFPWSSGEFTLDLSSNFLQGPIP-----APPTKTRHYLVSKNNLT--GEIPSWICNLSS 114
S F S+ +LDLS N L GP+ + + VS N L G++ + L+S
Sbjct: 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNS 152
Query: 115 LYILDLSDNNLSGE------LPRCLGNFSDTFMNGS------------NLGIIDMSHNLL 156
L +LDLS N++SG L G ++G+ NL +D+S N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 212
Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
IP L +C+ L+ +D+ N++ F + T +EL +L + SN F G I ++
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-- 269
Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNX----XXXXXXXXXXXXX 272
L+ + L+ N FTG +P + + ++ S +
Sbjct: 270 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 273 PHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG-LQVLSLANNNL 331
++ L M +M L + LS N F GE+P S+ NL L L L++NN
Sbjct: 328 NNFSGELPMDTLLKMRG-------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 332 EGHI-PS-CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
G I P+ C L+ L L NN F+G+IP L+ + L ++S N L+G IP +
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 195/449 (43%), Gaps = 68/449 (15%)
Query: 26 NKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI- 84
N G +P L M+ L+LS N +G + S+ S+ TLDLSSN GPI
Sbjct: 325 NNFSGELPMDTL-LKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 85 ----PAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS--- 137
P + + N TG+IP + N S L L LS N LSG +P LG+ S
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 138 --------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
M L + + N L G IP L+NC L I L NN++
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
P W+G L L IL L +N+F G I +C L +DL+ N F G +P+ F+
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 244 --AMKFVNASQLRYMRNXXXXXXXXXXXXXXPHY-------------------------Y 276
A F+ + Y++N +
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
S T N G M+ + +S N G IP I ++ L +L+L +N++ G IP
Sbjct: 621 TSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
GDL L LDLS+N G+IPQ ++ LT L ++S+NNL+GPIPE QF TF +
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 397 FDGNSGLCGKPLFKECENSEAPANEDQIA 425
F N GLCG PL C+ P+N D A
Sbjct: 731 FLNNPGLCGYPL-PRCD----PSNADGYA 754
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 172/392 (43%), Gaps = 57/392 (14%)
Query: 17 HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
+L+ LD+SSN IP ++Q +L++S N L+G D ++ + + L++S
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSALQ---HLDISGNKLSG-DFSRAISTCTELKL-LNIS 252
Query: 77 SNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICN-LSSLYILDLSDNNLSGELPRCLG 134
SN GPIP P K+ YL +++N TGEIP ++ +L LDLS N+ G +P G
Sbjct: 253 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 135 -------------NFS-----DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176
NFS DT + L ++D+S N G +P+SL N +
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-------- 364
Query: 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPK--LRIVDLSNNSFTGNL 234
+ L L L SNNF G I + C PK L+ + L NN FTG +
Sbjct: 365 ---------------ASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKI 407
Query: 235 PSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQMLSYEKIP 294
P C + Y+ + ++ Q L Y K
Sbjct: 408 PPTLSNCSELVSL--HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT- 464
Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
L +IL N GEIP+ ++N L +SL+NN L G IP G L L L LSNN
Sbjct: 465 --LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
FSG IP +L L + +++ N G IP A
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 162/398 (40%), Gaps = 102/398 (25%)
Query: 11 FLKQQKHLKALDLSSNKLHGNIPKW--------LLNPS------------MQNFSYLNLS 50
FL L+ LD+S NKL G+ + LLN S +++ YL+L+
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 51 KNSLTGFDQHPSVFPWSSGEFT-LDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGEIP 106
+N TG + P + T LDLS N G +P + +S NN +GE+P
Sbjct: 275 ENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 107 -SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMN--------------------GSN 145
+ + L +LDLS N SGELP L N S + + +
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 146 LGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205
L + + +N G+IP +L+NC+ L + L N + T P+ LG+LS+L L L N
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 206 GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXX 265
GEI + M + I+D N TG +PS C N
Sbjct: 453 GEIPQELMYVKTLETLILDF--NDLTGEIPSGLSNCTN---------------------- 488
Query: 266 XXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLS 325
L + LS+N GEIP I L+ L +L
Sbjct: 489 -------------------------------LNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 326 LANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
L+NN+ G+IP+ GD L LDL+ N F+G IP +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 181/422 (42%), Gaps = 59/422 (13%)
Query: 13 KQQKHLKALDLSSNKLHGNIPKW----------LLNPS---------------MQNFSYL 47
K L +LDLS N L G + LN S + + L
Sbjct: 94 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 48 NLSKNSLTGFDQHPSVFPWSSGEFT-LDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEI 105
+LS NS++G + V GE L +S N + G + +L VS NN + I
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSD-TFMNGS--------------NLGIID 150
P ++ + S+L LD+S N LSG+ R + ++ +N S +L +
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 272
Query: 151 MSHNLLQGRIPKSLAN-CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIK 209
++ N G IP L+ C L +DL N P + G+ S L+ L L SNNF GE+
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 210 EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXX 269
+ L+++DLS N F+G LP ++ ++ S N
Sbjct: 333 MDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS-----NNFSGPILPNLC 386
Query: 270 XXXPHYYYSLTMSNKGQMLSYEKIPYILT------AVILSSNGFHGEIPTSIANLKGLQV 323
+ L + N G KIP L+ ++ LS N G IP+S+ +L L+
Sbjct: 387 QNPKNTLQELYLQNNGFT---GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
L L N LEG IP + LE+L L N +G+IP L+ T L + ++S+N LTG I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 384 PE 385
P+
Sbjct: 504 PK 505
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 7 EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
E P+ L +L + LS+N+L G IPKW+ ++N + L LS NS +G P+
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSG--NIPAELGD 533
Query: 67 SSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICN--------------- 111
LDL++N G IPA K ++ N + G+ +I N
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 112 ---LSSLYILDLSDNNLSGELPRCLGNF-SDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167
+ S + LS N R G S TF N ++ +DMS+N+L G IPK + +
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN 227
L I++LG+N I + P +G L L+IL L SN G I + L +DLSN
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSN 710
Query: 228 NSFTGNLPS-KYFQCWNAMKFVN 249
N+ +G +P F+ + KF+N
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLN 733
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 156/357 (43%), Gaps = 45/357 (12%)
Query: 62 SVFPWSSGEFTLDLSSNFLQGPIP-----APPTKTRHYLVSKNNLT--GEIPSWICNLSS 114
S F S+ +LDLS N L GP+ + + VS N L G++ + L+S
Sbjct: 91 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNS 149
Query: 115 LYILDLSDNNLSGE------LPRCLGNFSDTFMNGS------------NLGIIDMSHNLL 156
L +LDLS N++SG L G ++G+ NL +D+S N
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 209
Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
IP L +C+ L+ +D+ N++ F + T +EL +L + SN F G I ++
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-- 266
Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNX----XXXXXXXXXXXXX 272
L+ + L+ N FTG +P + + ++ S +
Sbjct: 267 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 273 PHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG-LQVLSLANNNL 331
++ L M +M L + LS N F GE+P S+ NL L L L++NN
Sbjct: 325 NNFSGELPMDTLLKMRG-------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 332 EGHI-PS-CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
G I P+ C L+ L L NN F+G+IP L+ + L ++S N L+G IP +
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 106/273 (38%), Gaps = 55/273 (20%)
Query: 160 IPKSLANCAVLEIIDLGN-NQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFP 218
IP SLAN L + +G N ++ P + L++L L + N G I + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IK 125
Query: 219 KLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYS 278
L +D S N+ +G LP N + +
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGIT----------------------------FD 157
Query: 279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC 338
+ SY + T++ +S N G+IP + ANL L + L+ N LEG
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 339 FG-----------------DLTK------LESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375
FG DL K L LDL NN G +PQ LT L FL NVS
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 376 HNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL 408
NNL G IP+ FD S++ N LCG PL
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 7 EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
P+FL Q K L LD S N L G +P + S+ N + N ++G P
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISG------AIPD 167
Query: 67 SSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
S G F+ +S +S+N LTG+IP NL+ L +DLS N L
Sbjct: 168 SYGSFSKLFTS----------------MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186
G+ G SD +L ++ +L + + K+L +DL NN+I T P
Sbjct: 211 GDASVLFG--SDKNTQKIHLAKNSLAFDLGKVGLSKNLNG------LDLRNNRIYGTLPQ 262
Query: 187 WLGTLSELDILVLQSNNFHGEIKE 210
L L L L + NN GEI +
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 29/199 (14%)
Query: 78 NFLQGPIPAPPTKTR--HYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP---- 130
N L GPIP K HYL ++ N++G IP ++ + +L LD S N LSG LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 131 -------------RCLGNFSDTFMNGSNL-GIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176
R G D++ + S L + +S N L G+IP + AN L +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS 236
N + G+ + L N+ ++ + + L +DL NN G LP
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---KNLNGLDLRNNRIYGTLPQ 262
Query: 237 KYFQCWNAMKFVNASQLRY 255
Q +KF+++ + +
Sbjct: 263 GLTQ----LKFLHSLNVSF 277
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 26/140 (18%)
Query: 111 NLSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 98 TLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP 146
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRI 222
LE + L NNQ+ + L L LD L+LQ N+ + G H + F
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----- 201
Query: 223 VDLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 --LHGNPWLCNCEILYFRRW 219
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 318 LKGLQVLSLANNNL-EGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376
L L+VL +A N+ E +P F +L L LDLS P L+ L+ N+SH
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 377 NNL----TGPIPEANQFPTFDSS 395
NN T P N D S
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYS 550
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 105/260 (40%), Gaps = 31/260 (11%)
Query: 3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT------- 55
C +FP + K LK L +SNK GN + PS++ +L+LS+N L+
Sbjct: 338 CKFGQFPTL--KLKSLKRLTFTSNK-GGNAFSEVDLPSLE---FLDLSRNGLSFKGCCSQ 391
Query: 56 -GFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIP-SWICNLS 113
F + S + +SSNFL + H +NL S +L
Sbjct: 392 SDFGTISLKYLDLSFNGVITMSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLR 445
Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR-IPKSLANCAVLEI 172
+L LD+S + F+ F S+L ++ M+ N Q +P L
Sbjct: 446 NLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232
+DL Q+ P +LS L +L + NNF + +C L+++D S N
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKC-LNSLQVLDYSLNHIMT 556
Query: 233 NLPSKYFQCWNAMKFVNASQ 252
+ + +++ F+N +Q
Sbjct: 557 SKKQELQHFPSSLAFLNLTQ 576
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 318 LKGLQVLSLANNNL-EGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376
L L+VL +A N+ E +P F +L L LDLS P L+ L+ N+SH
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 377 NNL----TGPIPEANQFPTFDSS 395
NN T P N D S
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYS 526
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 31/260 (11%)
Query: 3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT------G 56
C +FP + K LK L +SNK GN + PS++ +L+LS+N L+
Sbjct: 314 CKFGQFPTL--KLKSLKRLTFTSNK-GGNAFSEVDLPSLE---FLDLSRNGLSFKGCCSQ 367
Query: 57 FDQHPSVFPWSSGEF--TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIP-SWICNLS 113
D + + F + +SSNFL + H +NL S +L
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR-IPKSLANCAVLEI 172
+L LD+S + F+ F S+L ++ M+ N Q +P L
Sbjct: 422 NLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232
+DL Q+ P +LS L +L + NNF + +C L+++D S N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKC-LNSLQVLDYSLNHIMT 532
Query: 233 NLPSKYFQCWNAMKFVNASQ 252
+ + +++ F+N +Q
Sbjct: 533 SKKQELQHFPSSLAFLNLTQ 552
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 149 IDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSEL 194
++++HNL+Q ++P+ +N LE +DL +N+I + L L ++
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 26/140 (18%)
Query: 111 NLSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 98 TLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP 146
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRI 222
LE + L NNQ+ + L L LD L+LQ N+ + G H + F
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----- 201
Query: 223 VDLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 --LHGNPWLCNCEILYFRRW 219
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232
+D NN + DT G L+EL+ L+LQ N K +M L+ +D+S NS +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 233 NLPSKYFQC-WNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTM-SNKGQMLSY 290
+ K C W SL M SN +
Sbjct: 389 D--EKKGDCSWTK------------------------------SLLSLNMSSNILTDTIF 416
Query: 291 EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
+P + + L SN IP + L+ LQ L++A+N L+ F LT L+ + L
Sbjct: 417 RCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 351 SNNWFSGQIPQ 361
N + P+
Sbjct: 476 HTNPWDCSCPR 486
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 318 LKGLQVLSLANNNL-EGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376
L L+VL +A N+ E +P F +L L LDLS P L+ L+ N+SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 377 NNL----TGPIPEANQFPTFDSS 395
NN T P N D S
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYS 231
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 26/140 (18%)
Query: 111 NLSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 98 TLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP 146
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRI 222
LE + L NNQ+ + L L LD L+LQ N+ + G H + F
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----- 201
Query: 223 VDLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 --LHGNPWLCNCEILYFRRW 219
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 26/140 (18%)
Query: 111 NLSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 98 TLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP 146
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRI 222
LE + L NNQ+ + L L LD L+LQ N+ + G H + F
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----- 201
Query: 223 VDLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 --LHGNPWLCNCEILYFRRW 219
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 288 LSYEKIPYIL---TAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
L EK+P L TA++ N EI NLK L L L NN + P F L
Sbjct: 41 LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
KLE L LS N ++P+++ L+ V N +T
Sbjct: 101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 288 LSYEKIPYIL---TAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
L EK+P L TA++ N EI NLK L L L NN + P F L
Sbjct: 41 LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
KLE L LS N ++P+++ L+ V N +T
Sbjct: 101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 88 PTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNLSGELPRCLGNF--SDTFMNGS 144
P+ T +S NNL+ W L++L+ L LS N+L NF S+ F+
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---------NFISSEAFVPVP 88
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL +D+S N L ++ LE++ L NN I+ +++L L L N
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 205 HG-EIKEHKMECGFPKLRIVDLSNNSF 230
++ K PKL ++DLS+N
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
L + LSSN H ++L+ L+VL L NN++ + F D+ +L+ L LS N S
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 357 GQIPQQLT----GLTFLEFFNVSHNNLTG-PIPEANQFPTF 392
+ P +L L L ++S N L P+ + + P +
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTF-L 369
+ TS+ K L L N LEG +P+ FG KL SL+L+ N + +IP G T +
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379
Query: 370 EFFNVSHNNL 379
E + +HN L
Sbjct: 380 ENLSFAHNKL 389
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI-PSCFGDLTKLESLDLSNNW 354
+L ++LS N F S AN L L + N + H+ C L L++LDLS+N
Sbjct: 299 LLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHND 358
Query: 355 FSGQ--IPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
QL L+ L+ N+SHN G +A
Sbjct: 359 IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLE 171
L +L LDLS N++ E C S N S+L +++SHN G ++ C LE
Sbjct: 346 LGNLQTLDLSHNDI--EASDCC---SLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 172 IIDLGNNQI-IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
++DL ++ I+ + L L +L L + F +H + G P LR ++L N F
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNL-TYCFLDTSNQHLL-AGLPVLRHLNLKGNHF 458
Query: 231 TGNLPSK 237
+K
Sbjct: 459 QDGTITK 465
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 112 LSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 99 LPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTPT 147
Query: 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRIV 223
LE + L NN + + L L LD L+LQ N+ + G H + F
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF------ 201
Query: 224 DLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 -LHGNPWLCNCEILYFRRW 219
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 112 LSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 99 LPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTPT 147
Query: 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRIV 223
LE + L NN + + L L LD L+LQ N+ + G H + F
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF------ 201
Query: 224 DLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 -LHGNPWLCNCEILYFRRW 219
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 111 NLSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 98 TLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP 146
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRI 222
LE + L NN + + L L LD L+LQ N+ + G H + F
Sbjct: 147 TPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----- 201
Query: 223 VDLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 --LHGNPWLCNCEILYFRRW 219
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 112 LSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 100 LPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTPT 148
Query: 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRIV 223
LE + L NN + + L L LD L+LQ N+ + G H + F
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF------ 202
Query: 224 DLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 203 -LHGNPWLCNCEILYFRRW 220
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 112 LSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 99 LPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTPT 147
Query: 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRIV 223
LE + L NN + + L L LD L+LQ N+ + G H + F
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF------ 201
Query: 224 DLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 -LHGNPWLCNCEILYFRRW 219
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 106/281 (37%), Gaps = 56/281 (19%)
Query: 107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
S + L+SL L S N ++ P N + L +D+S N + LA
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP---------LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLS 226
LE + NNQI D P LG L+ LD L L N ++K+ L +DL+
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLA 247
Query: 227 NNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQ 286
NN + P +K A+Q +SN
Sbjct: 248 NNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISNISP 278
Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346
+ LT + L+ N P I+NLK L L+L NN+ P LTKL+
Sbjct: 279 LAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Query: 347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
L SNN S L LT + + + HN ++ P AN
Sbjct: 331 RLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 369
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 94/243 (38%), Gaps = 27/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 115
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMK-FVNASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + +A+ + QL + N
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISD---------ISALSGLTSLQQLSFSSNQVTDL 166
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
S SNK +S L ++I ++N P I L L
Sbjct: 167 KPLANLTTLERLDIS---SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
Query: 384 PEA 386
P A
Sbjct: 278 PLA 280
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 111 NLSSLYILDLSDNNLSGELP----RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
L +L +LD+S N L+ LP R LG + ++ G+ L + P L
Sbjct: 98 TLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP 146
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH----GEIKEHKMECGFPKLRI 222
LE + L NN + + L L LD L+LQ N+ + G H + F
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----- 201
Query: 223 VDLSNNSFTGNLPSKYFQCW 242
L N + N YF+ W
Sbjct: 202 --LHGNPWLCNCEILYFRRW 219
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 85/224 (37%), Gaps = 45/224 (20%)
Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
LA LE + NNQI D P LG L+ LD L L N ++K+ L +
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDL 243
Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSN 283
DL+NN + P +K A+Q +SN
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISN 274
Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
+ LT + L+ N P I+NLK L L+L NN+ P LT
Sbjct: 275 ISPLAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
KL+ L SNN S L LT + + + HN ++ P AN
Sbjct: 327 KLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 368
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 115
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + + F N + L+ + N
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
SNK +S L ++I ++N P I L L
Sbjct: 176 RLDIS-------------SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 220
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
Query: 384 PEA 386
P A
Sbjct: 277 PLA 279
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
TR YL + N+LT E+P+ I NLS+L +LDLS N L+ LP LG+
Sbjct: 250 TRLYL-NGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 24/173 (13%)
Query: 39 PSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF---TLDLSSNFLQGPIP-APPTKTRHY 94
PS +F++LN ++N T SVF S TL L N L+ A TK
Sbjct: 350 PSPSSFTFLNFTQNVFTD-----SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404
Query: 95 L----VSKNNLTGEIPSWICNLS-SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII 149
L VS N+L C + S+ +L+LS N L+G + RCL + ++
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---------PPKVKVL 455
Query: 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSN 202
D+ +N + IPK + + L+ +++ +NQ+ L+ L + L N
Sbjct: 456 DLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 78 NFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS 137
N P PP +T+ +S+N+++ I LS L +L LS N + R L
Sbjct: 42 NLTHVPKDLPP-RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-----RSLD--F 93
Query: 138 DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW--LGTLSELD 195
F+ +L +D+SHN LQ S A L +DL N D P G L++L
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLT 149
Query: 196 ILVLQSNNFH 205
L L + F
Sbjct: 150 FLGLSAAKFR 159
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 290 YEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
++ +P +LT ++L N +P I N L LS++NNNLE F T L++L
Sbjct: 113 FQNVP-LLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL-TGPIPEA 386
LS+N + L+ + L NVS+N L T IP A
Sbjct: 171 QLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIA 206
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG--LTFLEFF 372
+ N GL + L+ N LE + F + +LE L +SNN + L G + L+
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVL 300
Query: 373 NVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK 406
++SHN+L QF ++ D NS + K
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 290 YEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
++ +P +LT ++L N +P I N L LS++NNNLE F T L++L
Sbjct: 119 FQNVP-LLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 349 DLSNNWFS 356
LS+N +
Sbjct: 177 QLSSNRLT 184
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG--LTFLEFF 372
+ N GL + L+ N LE + F + +LE L +SNN + L G + L+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVL 306
Query: 373 NVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK 406
++SHN+L QF ++ D NS + K
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGH--IPSCFGDLTKLESLDLSNNWFSG 357
+ LS N + +S A + LQ L L L+ PS F L L LDLSNN +
Sbjct: 435 IYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN 494
Query: 358 QIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
L GL LE + HNNL AN
Sbjct: 495 INEDLLEGLENLEILDFQHNNLARLWKRAN 524
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSN 202
SN+ +++++HN L+ P + + L I+D G N I P L L +L LQ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHN 83
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
LT + LS N H S + L L+ LSL NN++ P F L+ L L L +
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 357 GQIPQ---------QLTGLTFLEFFNVSHNNLTGPIPEANQF 389
+ L +LE+ N+ NN+ P ++N F
Sbjct: 310 QSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI--PSTKSNTF 349
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
EIPT++ + + + L N ++ P F KL +DLSNN S P GL L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 370 EFFNVSHNNLT 380
+ N +T
Sbjct: 83 NSLVLYGNKIT 93
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC 338
LT + K LS+ KI YI HG++ + ANL+ L + S N +EG
Sbjct: 24 LTAAMKSLDLSFNKITYI----------GHGDL-RACANLQVLILKSSRINTIEG---DA 69
Query: 339 FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377
F L LE LDLS+N S L+ L++ N+ N
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 10 NFLKQQKHLKALDLSSNKLHGNIPKWLLN-------PSMQNFSYLNLSKNSLTGFDQHPS 62
+F + K L+ LDLS N + + ++L N PS+Q L LS+N L +
Sbjct: 328 SFSQHLKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQT---LVLSQNHLRSMQKTGE 381
Query: 63 VFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119
+ +LD+S N P+P P K R +S TG C +L +LD
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTLEVLD 437
Query: 120 LSDNNL---SGELPR 131
+S+NNL S LPR
Sbjct: 438 VSNNNLDSFSLFLPR 452
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC 338
LT + K LS+ KI YI HG++ + ANL+ L + S N +EG
Sbjct: 50 LTAAMKSLDLSFNKITYI----------GHGDL-RACANLQVLILKSSRINTIEG---DA 95
Query: 339 FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377
F L LE LDLS+N S L+ L++ N+ N
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
EIPT++ + + + L N ++ P F KL +DLSNN S P GL L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 370 EFFNVSHNNLT 380
+ N +T
Sbjct: 83 NSLVLYGNKIT 93
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 85/224 (37%), Gaps = 45/224 (20%)
Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
LA LE + NNQI D P LG L+ LD L L N ++K+ L +
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDL 247
Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSN 283
DL+NN + P +K A+Q +SN
Sbjct: 248 DLANNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISN 278
Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
+ LT + L+ N P I+NLK L L+L NN+ P LT
Sbjct: 279 ISPLAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 330
Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
KL+ L +NN S L LT + + + HN ++ P AN
Sbjct: 331 KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 372
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 68 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 119
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + + F N + L+ + N
Sbjct: 120 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 179
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
SNK +S L ++I ++N P I L L
Sbjct: 180 RLDIS-------------SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 224
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 280
Query: 384 PEA 386
P A
Sbjct: 281 PLA 283
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 94/243 (38%), Gaps = 27/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 115
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMK-FVNASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + +A+ + QL + N
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISD---------ISALSGLTSLQQLNFSSNQVTDL 166
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
S SNK +S L ++I ++N P I L L
Sbjct: 167 KPLANLTTLERLDIS---SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
Query: 384 PEA 386
P A
Sbjct: 278 PLA 280
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 106/281 (37%), Gaps = 56/281 (19%)
Query: 107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
S + L+SL L+ S N ++ P N + L +D+S N + LA
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP---------LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLS 226
LE + NNQI D P LG L+ LD L L N ++K+ L +DL+
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLA 247
Query: 227 NNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQ 286
NN + P +K A+Q +SN
Sbjct: 248 NNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISNISP 278
Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346
+ LT + L+ N P I+NLK L L+L NN+ P LTKL+
Sbjct: 279 LAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Query: 347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
L NN S L LT + + + HN ++ P AN
Sbjct: 331 RLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 369
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 115
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + + F N + L+ + N
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
SNK +S L ++I ++N P I L L
Sbjct: 176 RLDIS-------------SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 220
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
Query: 384 PEA 386
P A
Sbjct: 277 PLA 279
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 84/224 (37%), Gaps = 45/224 (20%)
Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
LA LE + NNQI D P LG L+ LD L L N ++K+ L +
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDL 243
Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSN 283
DL+NN + P +K A+Q +SN
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISN 274
Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
+ LT + L+ N P I+NLK L L+L NN+ P LT
Sbjct: 275 ISPLAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
KL+ L NN S L LT + + + HN ++ P AN
Sbjct: 327 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 368
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 94/243 (38%), Gaps = 27/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 115
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMK-FVNASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + +A+ + QL + N
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISD---------ISALSGLTSLQQLSFSSNQVTDL 166
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
S SNK +S L ++I ++N P I L L
Sbjct: 167 KPLANLTTLERLDIS---SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
Query: 384 PEA 386
P A
Sbjct: 278 PLA 280
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 105/281 (37%), Gaps = 56/281 (19%)
Query: 107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
S + L+SL L S N ++ P N + L +D+S N + LA
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP---------LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLS 226
LE + NNQI D P LG L+ LD L L N ++K+ L +DL+
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLA 247
Query: 227 NNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQ 286
NN + P +K A+Q +SN
Sbjct: 248 NNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISNISP 278
Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346
+ LT + L+ N P I+NLK L L+L NN+ P LTKL+
Sbjct: 279 LAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Query: 347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
L NN S L LT + + + HN ++ P AN
Sbjct: 331 RLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 369
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
NL I+ S+N L P L N L I + NNQI D P L L+ L L L F
Sbjct: 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL----F 120
Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNXXXXX 263
+ +I + L ++LS+N+ + + F N + L+ + N
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180
Query: 264 XXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
SNK +S L ++I ++N P I L L
Sbjct: 181 RLDIS-------------SNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 225
Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
LSL N L+ LT L LDL+NN S P L+GLT L + N ++
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281
Query: 384 PEA 386
P A
Sbjct: 282 PLA 284
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 84/224 (37%), Gaps = 45/224 (20%)
Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
LA LE + NNQI D P LG L+ LD L L N ++K+ L +
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN----QLKDIGTLASLTNLTDL 248
Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSN 283
DL+NN + P +K A+Q +SN
Sbjct: 249 DLANNQISNLAPLSGLTKLTELKL-GANQ----------------------------ISN 279
Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
+ LT + L+ N P I+NLK L L+L NN+ P LT
Sbjct: 280 ISPLAGLTA----LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 331
Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
KL+ L NN S L LT + + + HN ++ P AN
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 373
>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate
Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
At 1.85 A Resolution
pdb|1VQU|B Chain B, Crystal Structure Of Anthranilate
Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
At 1.85 A Resolution
Length = 374
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 342 LTKLESLDLSNNWFSGQIPQQLTG--LTFLEFFNVSHNNLTG 381
L++ ++ +L W S +P +L+G LT L F VS + LTG
Sbjct: 40 LSRSQAAELXQGWLSEAVPPELSGAILTALNFKGVSADELTG 81
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 315 IANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNN 353
I +LK L+ L++A+N ++ +P F +LT LE LDLS+N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
LT + LS PT+ +L LQVL++A+N L+ F LT L+ + L N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Query: 357 GQIPQ 361
P+
Sbjct: 532 CSCPR 536
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 314 SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFN 373
S+ +LK L++LS+ NN L+ + G L+KLE LDL N + GLT L+ N
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVN 175
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 36/194 (18%)
Query: 28 LHGNIPKWLLNPSMQ---NFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI 84
LHGN ++ S Q N + L L N+L G D + F + LDLS N +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDA--AAFTGLTLLEQLDLSDNAQLRVV 95
Query: 85 PAPPTKTR-----HYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP----RCLG 134
PT R H L + + L P L++L L L DNNL LP R LG
Sbjct: 96 D--PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLG 152
Query: 135 NFSDTFMNGSNLGIIDMSHNLLQGRIP----KSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
N + F++G+ RIP + L+ + L N + P
Sbjct: 153 NLTHLFLHGN--------------RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRD 198
Query: 191 LSELDILVLQSNNF 204
L L L L +NN
Sbjct: 199 LGRLMTLYLFANNL 212
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
IP + L N S + + L +L L +N L G + F LT LE LDLS+
Sbjct: 29 IPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSD 88
Query: 353 N 353
N
Sbjct: 89 N 89
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
++PT+I VL+L +N L + F ++L SLD+ N S P+ L L
Sbjct: 22 DLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 370 EFFNVSHNNLT 380
+ N+ HN L+
Sbjct: 76 KVLNLQHNELS 86
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374
+ +L+ L + +A N++ PS F L L LDLSNN + L GL LE ++
Sbjct: 453 VPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511
Query: 375 SHNNLTGPIPEAN 387
HNNL AN
Sbjct: 512 QHNNLARLWKHAN 524
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 302 LSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP 360
L SNGF EIP + +L L+++ L NNL S F + L+SL+L N + +
Sbjct: 543 LESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VE 600
Query: 361 QQLTGLTF 368
+++ G F
Sbjct: 601 KKVFGPAF 608
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
++PT+I VL+L +N L + F ++L SLD+ N S P+ L L
Sbjct: 27 DLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 370 EFFNVSHNNLT 380
+ N+ HN L+
Sbjct: 81 KVLNLQHNELS 91
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG--HIPSCFGDLTKLESLDLSNNWFSG 357
+ LS N + S A + LQ L L L+ PS F L L LDLSNN +
Sbjct: 440 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 499
Query: 358 QIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
L GL LE ++ HNNL AN
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHAN 529
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 302 LSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP 360
L SNGF EIP + +L L+++ L NNL S F + L+SL+L N + +
Sbjct: 548 LESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VE 605
Query: 361 QQLTGLTF 368
+++ G F
Sbjct: 606 KKVFGPAF 613
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
++PT+I VL+L +N L + F ++L SLD+ N S P+ L L
Sbjct: 32 DLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 85
Query: 370 EFFNVSHNNLT 380
+ N+ HN L+
Sbjct: 86 KVLNLQHNELS 96
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374
+ +L+ L + +A N++ PS F L L LDLSNN + L GL LE ++
Sbjct: 463 VPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 521
Query: 375 SHNNLTGPIPEAN 387
HNNL AN
Sbjct: 522 QHNNLARLWKHAN 534
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 302 LSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP 360
L SNGF EIP + +L L+++ L NNL S F + L+SL+L N + +
Sbjct: 553 LESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VE 610
Query: 361 QQLTGLTF 368
+++ G F
Sbjct: 611 KKVFGPAF 618
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 309 GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS---GQIPQQLTG 365
+PT I QVL L +N + P F LT+L LDL NN + + +LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 366 LTFLEF 371
LT L
Sbjct: 80 LTQLSL 85
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 309 GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS---GQIPQQLTG 365
+PT I QVL L +N + P F LT+L LDL NN + + +LT
Sbjct: 30 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 366 LTFLEF 371
LT L
Sbjct: 88 LTQLSL 93
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 309 GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS---GQIPQQLTG 365
+PT I QVL L +N + P F LT+L LDL NN + + +LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 366 LTFLEF 371
LT L
Sbjct: 80 LTQLSL 85
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 16/146 (10%)
Query: 105 IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL 164
+P + N L ++DLS+N +S L N S F N + L + +S+N L+ P++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIST-----LSNQS--FSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE---------IKEHKMEC 215
L ++ L N I LS L L + +N + + +K E
Sbjct: 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEP 158
Query: 216 GFPKLRIVDLSNNSFTGNLPSKYFQC 241
G + + PSK F C
Sbjct: 159 GIARCAGPGEMADKLLLTTPSKKFTC 184
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 280 TMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
T+SN+ S+ + +LT +ILS N P + LK L++LSL N++ F
Sbjct: 68 TLSNQ----SFSNMTQLLT-LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Query: 340 GDLTKLESLDLSNN 353
DL+ L L + N
Sbjct: 123 NDLSALSHLAIGAN 136
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 138 DTFMNGSNLGI--------IDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQIIDTFP 185
DT + SN G+ D++ L G +PK L+N L +IDL NN+I
Sbjct: 12 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71
Query: 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
+++L L+L N I + G LR++ L N +
Sbjct: 72 QSFSNMTQLLTLILSYNRLRC-IPPRTFD-GLKSLRLLSLHGNDIS 115
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
+P SIANL+ L+ L + N+ L P+ L KLE LDL
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
+IP A L L+ L L+ N L+ P F LT L L L + + L L
Sbjct: 170 DIPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 370 EFFNVSHNNL 379
E N+SHNNL
Sbjct: 229 EELNLSHNNL 238
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 44/247 (17%)
Query: 137 SDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDI 196
+DTF + +L I+ +S NL++ + L ++L +N++ LS+L
Sbjct: 52 TDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE 111
Query: 197 LVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM 256
L L++N I + P LR +DL G L K + + F LRY+
Sbjct: 112 LWLRNNPIES-IPSYAFN-RVPSLRRLDL------GEL--KRLEYISEAAFEGLVNLRYL 161
Query: 257 RNXXXXXXXXXXXXXXPHYYYSLTMSNKGQMLSYEKIPYILTAVI------LSSNGFHGE 310
N G M + + IP LTA++ LS N
Sbjct: 162 --------------------------NLG-MCNLKDIPN-LTALVRLEELELSGNRLDLI 193
Query: 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE 370
P S L L+ L L + + + F DL LE L+LS+N T L LE
Sbjct: 194 RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLE 253
Query: 371 FFNVSHN 377
+++HN
Sbjct: 254 RVHLNHN 260
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 317 NLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL--TFLEFFN 373
NLK L L L+ N + ++ FG L L+S+D S+N +L L L FF+
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 374 VSHNNLTGPI 383
++ N+L +
Sbjct: 181 LAANSLYSRV 190
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
+IP ++ L L+ L L+ N L+ P F LT L L L + + L L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 370 EFFNVSHNNL 379
E N+SHNNL
Sbjct: 229 EELNLSHNNL 238
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 284 KGQMLSYEKIPYILTAVI----LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
KG S IP LT + LS+N + + LQ L L +N + F
Sbjct: 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 340 GDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374
L LE LDLS N+ S L+ L F N+
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 29/230 (12%)
Query: 9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
+F + LDL+ NK+ + LLN ++F+ L LS +L +++ +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 69 GEF------TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLS 121
F TLDLS N + + R + + + G +I S I LS+ Y + S
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAK-----RFF----DAIAGTKIQSLI--LSNSYNMGSS 255
Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI- 180
+ + + P NF+ + S + D+S + + + ++ LE + L N+I
Sbjct: 256 FGHTNFKDP---DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 181 -IDTFPAW-LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN 228
ID W L L +L++ S NF G I E KL ++DLS N
Sbjct: 313 KIDDNAFWGLTHLLKLNL----SQNFLGSIDSRMFE-NLDKLEVLDLSYN 357
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 314 SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFN 373
++ +L L+ L++ +N + S +L++L SL L+NN + + + GLT L
Sbjct: 260 AVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 374 VSHNNLTGPIPEANQFPTFDSSSF 397
+S N++T P A DS+ F
Sbjct: 318 LSQNHITDIRPLA-SLSKXDSADF 340
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 284 KGQMLSYEKIPYILTAVI----LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
KG S IP LT + LS+N + + LQ L L +N + F
Sbjct: 11 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 340 GDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374
L LE LDLS N+ S L+ L F N+
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,768,652
Number of Sequences: 62578
Number of extensions: 559050
Number of successful extensions: 1653
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 322
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)