Query 039564
Match_columns 485
No_of_seqs 342 out of 4059
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.6E-45 2.1E-49 396.8 28.6 384 2-407 197-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.7E-42 1.5E-46 374.4 30.2 394 2-408 149-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.5E-38 9.7E-43 296.5 4.5 354 9-408 95-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.6E-35 7.8E-40 277.0 4.5 344 16-403 78-429 (873)
5 KOG0444 Cytoskeletal regulator 100.0 4.2E-32 9.1E-37 258.3 -5.0 356 1-407 15-379 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 3.1E-32 6.8E-37 246.6 -9.3 377 2-403 77-541 (565)
7 KOG0444 Cytoskeletal regulator 99.9 3.3E-30 7.2E-35 245.4 -3.5 332 4-384 43-379 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 6E-30 1.3E-34 231.8 -7.9 326 2-380 169-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 7.3E-28 1.6E-32 239.3 -3.9 243 144-403 241-489 (1081)
10 PRK15387 E3 ubiquitin-protein 99.9 1.1E-23 2.4E-28 215.7 17.8 263 16-385 201-463 (788)
11 PRK15387 E3 ubiquitin-protein 99.9 8.4E-24 1.8E-28 216.6 16.6 259 1-365 209-467 (788)
12 KOG4237 Extracellular matrix p 99.9 1.9E-26 4.1E-31 208.9 -3.2 233 2-240 76-368 (498)
13 KOG0618 Serine/threonine phosp 99.9 1.1E-24 2.4E-29 216.8 0.4 292 6-378 170-487 (1081)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.6E-26 215.5 24.0 317 6-378 578-904 (1153)
15 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 214.6 24.9 342 34-402 552-905 (1153)
16 KOG4237 Extracellular matrix p 99.9 9.2E-25 2E-29 198.0 -0.9 312 71-408 49-364 (498)
17 PRK15370 E3 ubiquitin-protein 99.9 1.9E-21 4.2E-26 200.6 11.2 247 16-356 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.9 2.3E-21 5E-26 200.0 11.5 247 42-380 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-19 2.9E-24 173.6 0.1 189 20-231 2-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-19 4.9E-24 172.0 1.4 265 88-402 22-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.2E-19 4.8E-24 145.1 -3.6 164 142-366 31-195 (264)
22 PLN03150 hypothetical protein; 99.7 4E-16 8.6E-21 160.7 10.7 118 296-413 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 6E-18 1.3E-22 136.8 -3.9 154 41-231 32-186 (264)
24 KOG0532 Leucine-rich repeat (L 99.3 3.9E-14 8.4E-19 135.3 -3.9 172 145-380 76-247 (722)
25 PLN03150 hypothetical protein; 99.3 6.1E-12 1.3E-16 129.9 11.8 91 294-384 441-532 (623)
26 KOG0532 Leucine-rich repeat (L 99.3 5E-14 1.1E-18 134.5 -4.2 194 88-353 74-270 (722)
27 COG4886 Leucine-rich repeat (L 99.3 7.8E-12 1.7E-16 123.4 7.4 82 297-382 211-292 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4E-16 120.7 6.7 197 20-237 97-296 (394)
29 KOG1909 Ran GTPase-activating 99.2 1.9E-12 4E-17 117.0 -1.1 243 88-379 29-310 (382)
30 KOG3207 Beta-tubulin folding c 99.2 7.5E-12 1.6E-16 116.3 1.1 207 144-381 121-340 (505)
31 KOG1259 Nischarin, modulator o 99.2 9.6E-12 2.1E-16 110.1 1.5 199 15-232 181-413 (490)
32 KOG3207 Beta-tubulin folding c 99.1 8.9E-12 1.9E-16 115.8 0.4 207 13-231 118-339 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 6.7E-11 1.4E-15 100.3 5.1 35 164-198 109-146 (175)
34 PF14580 LRR_9: Leucine-rich r 99.1 4E-11 8.7E-16 101.7 3.2 104 90-205 20-126 (175)
35 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.4E-16 107.5 0.8 132 190-382 282-414 (490)
36 PF13855 LRR_8: Leucine rich r 99.0 3.6E-10 7.8E-15 78.8 3.1 61 319-379 1-61 (61)
37 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 76.2 3.9 59 145-203 2-60 (61)
38 KOG1909 Ran GTPase-activating 98.9 1.5E-10 3.2E-15 104.9 -1.2 214 11-231 53-311 (382)
39 KOG0531 Protein phosphatase 1, 98.9 3.9E-10 8.4E-15 111.6 -0.4 241 71-384 75-322 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 8.4E-09 1.8E-13 109.3 7.2 131 64-203 520-653 (889)
41 KOG0531 Protein phosphatase 1, 98.7 9E-10 2E-14 108.9 -2.7 196 14-231 70-268 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.8E-08 4E-13 106.8 6.5 102 16-124 523-629 (889)
43 KOG2982 Uncharacterized conser 98.5 1.4E-08 3.1E-13 90.2 -2.1 85 88-179 70-157 (418)
44 KOG1859 Leucine-rich repeat pr 98.5 3.6E-09 7.7E-14 104.6 -6.5 105 294-404 186-293 (1096)
45 KOG1859 Leucine-rich repeat pr 98.4 3.2E-09 7E-14 104.9 -7.5 128 65-205 162-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.7E-13 89.7 -5.4 179 169-377 186-373 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.2 7E-08 1.5E-12 84.8 -3.0 243 88-380 29-316 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.1 3E-07 6.5E-12 80.9 -1.9 216 12-232 26-286 (388)
49 PF12799 LRR_4: Leucine Rich r 98.1 2.3E-06 5E-11 54.5 2.5 40 16-58 1-40 (44)
50 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.5E-11 78.4 1.0 81 144-224 199-285 (418)
51 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.8E-12 84.3 -5.1 59 294-354 312-374 (419)
52 KOG4579 Leucine-rich repeat (L 98.0 2.3E-07 4.9E-12 73.2 -3.3 81 297-380 55-136 (177)
53 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.5E-10 68.1 6.6 14 112-125 87-100 (233)
54 PF12799 LRR_4: Leucine Rich r 98.0 5E-06 1.1E-10 52.9 2.5 35 321-356 3-37 (44)
55 KOG4579 Leucine-rich repeat (L 97.9 8.1E-07 1.8E-11 70.1 -2.4 83 297-382 29-115 (177)
56 PRK15386 type III secretion pr 97.9 6.7E-05 1.5E-09 72.0 9.3 57 109-178 48-104 (426)
57 KOG1644 U2-associated snRNP A' 97.8 3E-05 6.4E-10 65.7 5.5 129 18-157 21-153 (233)
58 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 70.6 8.7 135 12-179 48-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.5 1.8E-05 4E-10 82.2 -0.1 111 64-182 144-264 (699)
60 KOG3665 ZYG-1-like serine/thre 97.2 0.00018 3.9E-09 74.9 2.4 77 168-248 122-200 (699)
61 PF13306 LRR_5: Leucine rich r 97.2 0.0016 3.4E-08 52.9 7.4 123 107-245 6-128 (129)
62 KOG2123 Uncharacterized conser 96.8 2.9E-05 6.3E-10 68.9 -6.2 85 42-130 19-105 (388)
63 PF13306 LRR_5: Leucine rich r 96.8 0.0045 9.7E-08 50.2 6.7 102 88-201 11-112 (129)
64 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.3E-08 58.9 2.4 55 144-200 91-151 (260)
65 KOG2123 Uncharacterized conser 96.7 7.3E-05 1.6E-09 66.5 -4.8 102 112-224 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.4 0.0021 4.6E-08 57.1 2.5 39 143-181 64-104 (260)
67 PF00560 LRR_1: Leucine Rich R 95.7 0.0048 1E-07 32.5 0.9 12 321-332 2-13 (22)
68 PF00560 LRR_1: Leucine Rich R 95.6 0.0047 1E-07 32.6 0.7 21 344-365 1-21 (22)
69 KOG4341 F-box protein containi 95.4 0.00049 1.1E-08 64.9 -5.9 62 317-378 370-437 (483)
70 KOG4341 F-box protein containi 95.3 0.00049 1.1E-08 64.8 -6.4 78 294-371 371-456 (483)
71 PF13504 LRR_7: Leucine rich r 93.5 0.044 9.5E-07 26.7 1.1 13 43-55 2-14 (17)
72 KOG4308 LRR-containing protein 92.9 0.00057 1.2E-08 68.1 -12.0 87 91-180 89-184 (478)
73 KOG0473 Leucine-rich repeat pr 91.1 0.0062 1.3E-07 53.1 -6.1 83 295-380 42-124 (326)
74 KOG4242 Predicted myosin-I-bin 90.9 0.78 1.7E-05 44.7 7.0 15 220-234 356-370 (553)
75 smart00369 LRR_TYP Leucine-ric 90.9 0.21 4.5E-06 27.4 2.0 14 343-356 2-15 (26)
76 smart00370 LRR Leucine-rich re 90.9 0.21 4.5E-06 27.4 2.0 14 343-356 2-15 (26)
77 smart00370 LRR Leucine-rich re 90.3 0.24 5.2E-06 27.1 1.9 15 169-183 3-17 (26)
78 smart00369 LRR_TYP Leucine-ric 90.3 0.24 5.2E-06 27.1 1.9 15 169-183 3-17 (26)
79 KOG4308 LRR-containing protein 89.8 0.0023 4.9E-08 63.9 -11.4 82 18-101 89-184 (478)
80 KOG1947 Leucine rich repeat pr 89.1 0.094 2E-06 53.1 -0.7 113 112-230 187-307 (482)
81 KOG3864 Uncharacterized conser 86.6 0.19 4.2E-06 43.2 -0.1 87 170-257 103-190 (221)
82 PF13516 LRR_6: Leucine Rich r 86.5 0.16 3.4E-06 27.3 -0.5 13 320-332 3-15 (24)
83 KOG3864 Uncharacterized conser 85.2 0.16 3.4E-06 43.7 -1.4 82 297-378 103-187 (221)
84 smart00365 LRR_SD22 Leucine-ri 81.1 1.5 3.1E-05 24.1 1.9 16 42-57 2-17 (26)
85 KOG1947 Leucine rich repeat pr 81.1 0.58 1.3E-05 47.3 0.6 115 88-205 187-308 (482)
86 KOG0473 Leucine-rich repeat pr 80.9 0.047 1E-06 47.8 -6.2 89 312-402 35-123 (326)
87 smart00364 LRR_BAC Leucine-ric 77.4 1.7 3.7E-05 23.8 1.4 17 344-361 3-19 (26)
88 TIGR00864 PCC polycystin catio 75.5 2 4.3E-05 51.3 2.7 36 349-384 1-36 (2740)
89 smart00368 LRR_RI Leucine rich 74.0 2.9 6.2E-05 23.3 1.8 14 16-29 2-15 (28)
90 PF01102 Glycophorin_A: Glycop 71.5 0.88 1.9E-05 36.0 -0.9 16 441-456 66-81 (122)
91 COG3216 Uncharacterized protei 70.1 1.5 3.2E-05 36.6 0.1 46 435-480 133-178 (184)
92 KOG3763 mRNA export factor TAP 68.0 2.7 6E-05 42.0 1.4 79 41-119 217-307 (585)
93 PF04478 Mid2: Mid2 like cell 66.6 5.5 0.00012 32.6 2.6 20 439-458 49-68 (154)
94 PF08374 Protocadherin: Protoc 61.6 4.7 0.0001 35.0 1.5 25 437-461 36-60 (221)
95 KOG3763 mRNA export factor TAP 59.0 4.7 0.0001 40.4 1.2 57 71-129 221-286 (585)
96 KOG4242 Predicted myosin-I-bin 57.3 26 0.00057 34.6 5.8 17 115-131 216-232 (553)
97 PF04971 Lysis_S: Lysis protei 52.3 4.3 9.3E-05 28.0 -0.2 25 439-469 33-57 (68)
98 PTZ00382 Variant-specific surf 48.7 15 0.00034 27.7 2.3 9 441-449 68-76 (96)
99 PF06305 DUF1049: Protein of u 45.3 5.8 0.00013 27.7 -0.4 11 447-457 27-37 (68)
100 smart00367 LRR_CC Leucine-rich 44.6 16 0.00036 19.7 1.4 11 16-26 2-12 (26)
101 PF01034 Syndecan: Syndecan do 42.3 8 0.00017 26.4 -0.1 18 441-458 11-28 (64)
102 PF04478 Mid2: Mid2 like cell 42.2 10 0.00023 31.0 0.5 24 436-459 50-73 (154)
103 PF02439 Adeno_E3_CR2: Adenovi 41.0 4.5 9.7E-05 24.3 -1.2 17 442-458 6-22 (38)
104 PF03302 VSP: Giardia variant- 37.4 16 0.00035 35.9 1.1 12 447-458 377-388 (397)
105 PF15050 SCIMP: SCIMP protein 35.8 4.7 0.0001 31.1 -2.1 12 463-474 31-42 (133)
106 KOG4752 Ribosomal protein L41 35.7 27 0.00059 18.2 1.2 15 464-478 4-18 (26)
107 PF06697 DUF1191: Protein of u 35.7 32 0.00068 31.6 2.6 9 441-449 216-224 (278)
108 PF15179 Myc_target_1: Myc tar 35.4 4.6 9.9E-05 33.9 -2.5 31 437-468 18-48 (197)
109 TIGR00985 3a0801s04tom mitocho 34.7 15 0.00033 30.2 0.4 15 444-458 11-25 (148)
110 PF06072 Herpes_US9: Alphaherp 31.6 29 0.00063 23.3 1.2 11 466-476 14-24 (60)
111 PF05162 Ribosomal_L41: Riboso 31.4 31 0.00066 18.2 1.0 12 464-475 4-15 (25)
112 TIGR00864 PCC polycystin catio 27.0 44 0.00094 40.9 2.5 32 150-181 1-32 (2740)
113 PF14991 MLANA: Protein melan- 24.2 24 0.00053 27.2 -0.1 9 461-469 41-49 (118)
114 PF08374 Protocadherin: Protoc 23.6 34 0.00074 29.9 0.6 13 447-459 49-61 (221)
115 PF14770 TMEM18: Transmembrane 23.2 49 0.0011 26.4 1.4 36 443-478 79-114 (123)
116 PF02064 MAS20: MAS20 protein 22.5 29 0.00062 27.6 0.0 12 447-458 4-15 (121)
117 PF03302 VSP: Giardia variant- 22.4 35 0.00076 33.6 0.6 32 439-470 363-394 (397)
118 smart00082 LRRCT Leucine rich 22.2 45 0.00097 21.3 0.9 10 400-409 1-10 (51)
119 PF14851 FAM176: FAM176 family 21.5 16 0.00036 30.2 -1.6 21 445-465 27-47 (153)
120 PF07204 Orthoreo_P10: Orthore 21.3 54 0.0012 24.3 1.2 28 436-465 41-68 (98)
121 PTZ00370 STEVOR; Provisional 20.2 32 0.00069 31.6 -0.2 6 463-468 275-280 (296)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.6e-45 Score=396.78 Aligned_cols=384 Identities=32% Similarity=0.464 Sum_probs=268.2
Q ss_pred CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
+|.+ +.+|..++++++|++|+|++|.+.+.+|..++ .+++|++|++++|.+++..|. .+.++..+ ++|++++|.+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L-~~L~L~~n~l 272 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPS-SLGNLKNL-QYLFLYQNKL 272 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccCh-hHhCCCCC-CEEECcCCee
Confidence 5666 67788888888888888888888777887777 778888888888877766554 34444443 7777777777
Q ss_pred cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564 81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~ 157 (485)
++..|.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..++. +++|+.|++++|.++
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-------LPRLQVLQLWSNKFS 345 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-------CCCCCEEECcCCCCc
Confidence 7666654 667777777777777777777777777777777777777666654433 245555555555555
Q ss_pred ccCCccccCCCCCcEEEccCCcccCCcCh------------------------hhhCCCCCCEEEeeccccccccCCccc
Q 039564 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPA------------------------WLGTLSELDILVLQSNNFHGEIKEHKM 213 (485)
Q Consensus 158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~ 213 (485)
+.+|..+..+++|+.|++++|.+.+..|. .+..+++|+.|++++|.+.+.+|..+
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~- 424 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF- 424 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-
Confidence 55555555555555555555555444444 44445555555555555544444444
Q ss_pred cCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc--
Q 039564 214 ECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE-- 291 (485)
Q Consensus 214 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 291 (485)
..+++|+.|++++|.+.+.++.. +..+++|+.+++.++.........+ -...+..+++..+......+
T Consensus 425 -~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~--------~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 425 -TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSF--------GSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred -hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCccc--------ccccceEEECcCCccCCccChh
Confidence 44555555555555555433322 3344555555554443322111100 01245667777766654433
Q ss_pred -cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCC
Q 039564 292 -KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE 370 (485)
Q Consensus 292 -~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 370 (485)
..++.|+.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 2467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 371 FFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407 (485)
Q Consensus 371 ~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 407 (485)
.+++++|++.+.+|....+..+....+.|||.+|+.+
T Consensus 575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999998888888888999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-42 Score=374.40 Aligned_cols=394 Identities=31% Similarity=0.414 Sum_probs=277.7
Q ss_pred CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
+|.+ +.+|..++++++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++..|. .+..+..+ ++|++++|.+
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L-~~L~L~~n~l 224 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT--NLTSLEFLTLASNQLVGQIPR-ELGQMKSL-KWIYLGYNNL 224 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhh--hCcCCCeeeccCCCCcCcCCh-HHcCcCCc-cEEECcCCcc
Confidence 5666 67788888888888888888888878888887 788888888888888776654 44444444 8888888888
Q ss_pred cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564 81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~ 157 (485)
++..|.. +++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+|..++. +++|++|++++|.+.
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-------l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-------LQKLISLDLSDNSLS 297 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-------ccCcCEEECcCCeec
Confidence 7777654 778888888888888778888888888888888888887777755543 356666666666666
Q ss_pred ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237 (485)
Q Consensus 158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 237 (485)
+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.+|..
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChh
Confidence 6666666666666666666666666666666666666666666666665555544 44555555555555555444432
Q ss_pred -----------------------hhcccccceeccccchhhhhccccccccc----------c-cccCc------Ccccc
Q 039564 238 -----------------------YFQCWNAMKFVNASQLRYMRNFLSSYFSF----------D-FYGYF------PHYYY 277 (485)
Q Consensus 238 -----------------------~~~~l~~L~~l~~~~~~~~~~~~~~~~~~----------~-~~~~~------~~~~~ 277 (485)
.+..+++|+.+++.++.........+... + ..+.. ...+.
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 13334444444444332221111110000 0 00011 11344
Q ss_pred eEEeeecCccccccc--ccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcC
Q 039564 278 SLTMSNKGQMLSYEK--IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355 (485)
Q Consensus 278 ~l~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 355 (485)
.+.+..+......+. ....|+.|++++|++.+..|..+.++++|+.|+|++|++.+.+|..+..+++|++|++++|.+
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 455555544332222 245789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 356 SGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 356 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
++.+|..|..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+..|.
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999999999999999999875 4567788889999988775553
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-38 Score=296.54 Aligned_cols=354 Identities=21% Similarity=0.261 Sum_probs=215.9
Q ss_pred ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-
Q 039564 9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP- 87 (485)
Q Consensus 9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~- 87 (485)
+..|.++++|+.++|.+|.++ .+|..-+ ...+|+.|+|.+|.|+.+... .......|++||||.|.|+.+....
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~--~sghl~~L~L~~N~I~sv~se--~L~~l~alrslDLSrN~is~i~~~sf 169 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELT-RIPRFGH--ESGHLEKLDLRHNLISSVTSE--ELSALPALRSLDLSRNLISEIPKPSF 169 (873)
T ss_pred HHHHhcCCcceeeeeccchhh-hcccccc--cccceeEEeeeccccccccHH--HHHhHhhhhhhhhhhchhhcccCCCC
Confidence 334555555555555555555 5554333 344455555555555544332 2222333355555555555332222
Q ss_pred --CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564 88 --PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165 (485)
Q Consensus 88 --~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 165 (485)
-.++++|+|++|.|+..-...|.++.+|.+|.|+.|+++ .+|. ..|+.++.|+.|+|..|+|...---.|.
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~------r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQ------RSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCH------HHhhhcchhhhhhccccceeeehhhhhc
Confidence 234555555555555555555555555555555555555 4443 2344445555555555555532234455
Q ss_pred CCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccc
Q 039564 166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM 245 (485)
Q Consensus 166 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 245 (485)
++++|+.|.|..|.+.....++|..+.++++|+|..|++...-...+ .++..|+.|++++|.|. .+....+...++|
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~-rih~d~WsftqkL 319 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKL 319 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhh-eeecchhhhcccc
Confidence 55555555555555555555555555555555555555553322233 34555555555555555 2222224444455
Q ss_pred eeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccc---ccccccEEEcCCCcCcccCchhhccCCCCC
Q 039564 246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEK---IPYILTAVILSSNGFHGEIPTSIANLKGLQ 322 (485)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 322 (485)
+.++++.+ ......+. -+..|+.|.|++|.+...-...|..+++|+
T Consensus 320 ~~LdLs~N-------------------------------~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 320 KELDLSSN-------------------------------RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred eeEecccc-------------------------------ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 55444432 22211111 155689999999999877777889999999
Q ss_pred EEeCcCceecccCCc---cccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCC
Q 039564 323 VLSLANNNLEGHIPS---CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDG 399 (485)
Q Consensus 323 ~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~ 399 (485)
+|||++|.+++.+.+ .|.++++|+.|++.+|++..+--..|..++.|++|||.+|.+....|.......+..+.+..
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 999999999877654 47889999999999999996666789999999999999999988777665444677777888
Q ss_pred CCCCCCCCC
Q 039564 400 NSGLCGKPL 408 (485)
Q Consensus 400 n~~lc~~~~ 408 (485)
-.++|+|.+
T Consensus 449 ssflCDCql 457 (873)
T KOG4194|consen 449 SSFLCDCQL 457 (873)
T ss_pred cceEEeccH
Confidence 889999977
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-35 Score=277.03 Aligned_cols=344 Identities=23% Similarity=0.229 Sum_probs=261.6
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCc
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTR 92 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~ 92 (485)
+.-+.||+|+|++...-+..|- .+++|+.+++.+|.++.+ |.+......++.|+|.+|.|+...... ++.|+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~--nl~nLq~v~l~~N~Lt~I---P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFY--NLPNLQEVNLNKNELTRI---PRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred cceeeeeccccccccCcHHHHh--cCCcceeeeeccchhhhc---ccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 3456688888888877666676 788888888888888865 345666666688888888887655443 77888
Q ss_pred EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564 93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI 172 (485)
Q Consensus 93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 172 (485)
.|||+.|.|+..--..|..-.++++|+|++|+|+...- +.|..+.+|.+|.|+.|+++...+..|+++++|+.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-------~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-------GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-------ccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 88888888875444566666788888888888873322 45666678888888888888666677888888888
Q ss_pred EEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccc
Q 039564 173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ 252 (485)
Q Consensus 173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~ 252 (485)
|+|..|+|...--.+|.++++|+.|.+..|.+...-...| ..+.+++.|+|..|+++ .+...+.-.+++|+.+++++
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccch
Confidence 8888888854445678888888888888888874433344 67788888888888887 66666677778888877776
Q ss_pred hhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec
Q 039564 253 LRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE 332 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (485)
+..-+..... -.....|++|+|+.|+++...+..|..+..|++|+|++|.+.
T Consensus 303 NaI~rih~d~----------------------------WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 303 NAIQRIHIDS----------------------------WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred hhhheeecch----------------------------hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 5433321111 123566999999999999888888999999999999999999
Q ss_pred ccCCccccCCCCCCEEECCCCcCcccCcc---cccCCCCCCEEeccCCcccccCCCC--CCCCCCCCCCCCCCCCC
Q 039564 333 GHIPSCFGDLTKLESLDLSNNWFSGQIPQ---QLTGLTFLEFFNVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGL 403 (485)
Q Consensus 333 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~l 403 (485)
..-...|..+++|+.|||++|.++..+.+ .|..+++|+.|++.+|++. .||.. ..++.++.+++.+|+--
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence 77778899999999999999999876654 5778999999999999997 44432 46777888888888743
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.2e-32 Score=258.29 Aligned_cols=356 Identities=25% Similarity=0.340 Sum_probs=282.2
Q ss_pred CCCCC--CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC
Q 039564 1 RSCNL--FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN 78 (485)
Q Consensus 1 ~~n~l--~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n 78 (485)
++|.+ +.+|.....+++++-|-|...++. .+|+.++ .+.+|++|.+++|++..+-.. +..+..+ +.+++..|
T Consensus 15 sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~--~lqkLEHLs~~HN~L~~vhGE--Ls~Lp~L-Rsv~~R~N 88 (1255)
T KOG0444|consen 15 SGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS--RLQKLEHLSMAHNQLISVHGE--LSDLPRL-RSVIVRDN 88 (1255)
T ss_pred cCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH--HHhhhhhhhhhhhhhHhhhhh--hccchhh-HHHhhhcc
Confidence 46777 688899999999999999888888 8898888 889999999999988765332 4445555 88999988
Q ss_pred ccc--ccCCCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564 79 FLQ--GPIPAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN 154 (485)
Q Consensus 79 ~l~--~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n 154 (485)
.+. |++++. +..|+.|+|++|++. ..|..+..-+++-+|+|++|+|. +||..+ |.++..|-.||||+|
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l------finLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSL------FINLTDLLFLDLSNN 160 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchH------HHhhHhHhhhccccc
Confidence 876 333333 888999999999998 78888888888999999999998 888743 566788889999999
Q ss_pred cccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc-cccCCccccCCCCCccEEEccCccCCcc
Q 039564 155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH-GEIKEHKMECGFPKLRIVDLSNNSFTGN 233 (485)
Q Consensus 155 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 233 (485)
++. .+|..+..+..|++|+|++|.+...--.-+..|++|++|.+++.+-+ ..+|..+ ..+.+|+.+|+|.|.+. .
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-c
Confidence 988 77888888999999999999885443344556778888888877643 3467766 67889999999999987 7
Q ss_pred CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCch
Q 039564 234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT 313 (485)
Q Consensus 234 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 313 (485)
+|+. .-.+.+|+.++++.++.-.. .+ .......|++|++|.|+++ .+|+
T Consensus 237 vPec-ly~l~~LrrLNLS~N~iteL---------------------~~--------~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 237 VPEC-LYKLRNLRRLNLSGNKITEL---------------------NM--------TEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred chHH-HhhhhhhheeccCcCceeee---------------------ec--------cHHHHhhhhhhccccchhc-cchH
Confidence 7754 55677777777665432211 00 0011234899999999999 8999
Q ss_pred hhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCC
Q 039564 314 SIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPT 391 (485)
Q Consensus 314 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~ 391 (485)
.+..++.|+.|.+.+|+++ .-+|..++.+..|+++..++|.+. ..|..++.+..|+.|.|+.|++.. .|.. ..++.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~ 363 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPD 363 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCC
Confidence 9999999999999999874 358889999999999999999998 899999999999999999999974 4554 45677
Q ss_pred CCCCCCCCCCCCCCCC
Q 039564 392 FDSSSFDGNSGLCGKP 407 (485)
Q Consensus 392 l~~~~~~~n~~lc~~~ 407 (485)
+..+++..||.+.-.|
T Consensus 364 l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPP 379 (1255)
T ss_pred cceeeccCCcCccCCC
Confidence 8889999999887554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-32 Score=246.58 Aligned_cols=377 Identities=24% Similarity=0.305 Sum_probs=196.9
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ 81 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~ 81 (485)
+|++.++|++++.+..++.|+.++|+++ .+|+.+. ...+|+.|++++|.+....+ +++.+..+ ..++..+|+++
T Consensus 77 ~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~--s~~~l~~l~~s~n~~~el~~--~i~~~~~l-~dl~~~~N~i~ 150 (565)
T KOG0472|consen 77 DNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG--SLISLVKLDCSSNELKELPD--SIGRLLDL-EDLDATNNQIS 150 (565)
T ss_pred cchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh--hhhhhhhhhccccceeecCc--hHHHHhhh-hhhhccccccc
Confidence 4556666666666666666666666666 5666665 56666666666666665443 24554444 55555555555
Q ss_pred ccCCCC-------------------------CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccC
Q 039564 82 GPIPAP-------------------------PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF 136 (485)
Q Consensus 82 ~~~~~~-------------------------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 136 (485)
..+++. ++.|++|+...|.+. .+|..++.+.+|..|++..|.+. .+|
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP------ 222 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP------ 222 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC------
Confidence 433332 444455555554444 44555555555555555555554 344
Q ss_pred cccccCCCCccEEEccCCcccccCCcc-ccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccC
Q 039564 137 SDTFMNGSNLGIIDMSHNLLQGRIPKS-LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC 215 (485)
Q Consensus 137 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 215 (485)
.|.++..|++|+++.|.|. .+|.. ..+++++.+|||.+|++ ...|+.+.-+.+|.+|++++|.++ .+|..+ +
T Consensus 223 --ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is-~Lp~sL--g 295 (565)
T KOG0472|consen 223 --EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDIS-SLPYSL--G 295 (565)
T ss_pred --CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccc-cCCccc--c
Confidence 2333445555555555555 33332 23555555555555555 334444555555555555555554 344444 4
Q ss_pred CCCCccEEEccCccCCccCChhhhcc-----cccc------------------------------------eeccccchh
Q 039564 216 GFPKLRIVDLSNNSFTGNLPSKYFQC-----WNAM------------------------------------KFVNASQLR 254 (485)
Q Consensus 216 ~l~~L~~L~l~~n~l~~~~~~~~~~~-----l~~L------------------------------------~~l~~~~~~ 254 (485)
.+ +|+.|.+.+|++. .+...+... ++.| +.++++..+
T Consensus 296 nl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred cc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 44 4555555555443 111111100 0000 000000000
Q ss_pred h----------hh--cccccccccccccCcCccc-------ceEEeeecC--cccccccccccccEEEcCCCcCcccCch
Q 039564 255 Y----------MR--NFLSSYFSFDFYGYFPHYY-------YSLTMSNKG--QMLSYEKIPYILTAVILSSNGFHGEIPT 313 (485)
Q Consensus 255 ~----------~~--~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 313 (485)
. .. .+..-..+.+.+..+|..+ ..+..+++. ....+.+..+.+..|+|++|-+. .+|.
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 0 00 0000000011111122111 011111111 11122233556777888877776 6777
Q ss_pred hhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCC
Q 039564 314 SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFD 393 (485)
Q Consensus 314 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~ 393 (485)
.++.+..|+.||+|.|+|. .+|.++-.+..++.+-.++|++....|+.+.++..|..||+.+|.+....|.......+.
T Consensus 453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccccee
Confidence 7777777888888888776 667666666666666666677775666667778888888888888876666666777778
Q ss_pred CCCCCCCCCC
Q 039564 394 SSSFDGNSGL 403 (485)
Q Consensus 394 ~~~~~~n~~l 403 (485)
.+.+.|||+.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 8888888875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.3e-30 Score=245.43 Aligned_cols=332 Identities=26% Similarity=0.329 Sum_probs=235.6
Q ss_pred CCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccccc
Q 039564 4 NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGP 83 (485)
Q Consensus 4 ~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~ 83 (485)
+|.++|+.++.|.+|++|.+++|++. .+-..+. .+++|+.+++.+|++....-.+++|++..+ .+||||+|+++.
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs--~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL-t~lDLShNqL~E- 117 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELS--DLPRLRSVIVRDNNLKNSGIPTDIFRLKDL-TILDLSHNQLRE- 117 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhc--cchhhHHHhhhccccccCCCCchhcccccc-eeeecchhhhhh-
Confidence 45788999999999999999999887 5555666 789999999999988532222368888887 999999999884
Q ss_pred CCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 84 IPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 84 ~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
.|.. -.++-.|+|++|+|..+.-..|.+++.|-.|||++|++. .+|..+..+ ..|++|+|++|.+...-
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-------~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL-------SMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHH-------hhhhhhhcCCChhhHHH
Confidence 4443 678888999999998544456778899999999999988 788766554 67888888888776443
Q ss_pred CccccCCCCCcEEEccCCccc-CCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhh
Q 039564 161 PKSLANCAVLEIIDLGNNQII-DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF 239 (485)
Q Consensus 161 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 239 (485)
-..+..+++|++|.+++.+=+ .-+|..+..+.+|..++++.|.+. .+|+-. ..+++|+.|+||+|.++ .+... .
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl--y~l~~LrrLNLS~N~it-eL~~~-~ 264 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL--YKLRNLRRLNLSGNKIT-ELNMT-E 264 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH--hhhhhhheeccCcCcee-eeecc-H
Confidence 444555566666666654322 335555666666666666666665 555554 45666666666666665 33211 3
Q ss_pred cccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc-cCchhhccC
Q 039564 240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG-EIPTSIANL 318 (485)
Q Consensus 240 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l 318 (485)
..+..++.++++.++... +|.. ..-++.|+.|.+.+|+++- -+|..++.+
T Consensus 265 ~~W~~lEtLNlSrNQLt~--------------LP~a---------------vcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTV--------------LPDA---------------VCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred HHHhhhhhhccccchhcc--------------chHH---------------HhhhHHHHHHHhccCcccccCCccchhhh
Confidence 344445555444332211 0000 0113457778888888652 378889999
Q ss_pred CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564 319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 384 (485)
.+|+.+..++|.+. .+|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+=....|
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999999887 88999999999999999999998 788888889999999999987554333
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=6e-30 Score=231.85 Aligned_cols=326 Identities=25% Similarity=0.316 Sum_probs=205.3
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ 81 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~ 81 (485)
+|++.++|+..-+++.|++||...|.+. .+|..++ .+.+|+.|+|.+|++... | -|..+..|.+|.++.|.|.
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg--~l~~L~~LyL~~Nki~~l-P---ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELG--GLESLELLYLRRNKIRFL-P---EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhc--chhhhHHHHhhhcccccC-C---CCCccHHHHHHHhcccHHH
Confidence 3444444444444555555555555554 5555555 566666666666666543 1 1444444466666666665
Q ss_pred ccCCC---CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc
Q 039564 82 GPIPA---PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG 158 (485)
Q Consensus 82 ~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~ 158 (485)
..... .+..+..||+++|+++ ..|+.++-+++|+.||+++|.++ .+|..+|++ .|+.|-+.+|.+..
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--------hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--------HLKFLALEGNPLRT 311 (565)
T ss_pred hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--------eeeehhhcCCchHH
Confidence 33222 2778888999999998 78988999999999999999888 778777764 45566666655421
Q ss_pred -------------------------------------c-CCc---cccCCCCCcEEEccCCcccCCcChhhhCCC--CCC
Q 039564 159 -------------------------------------R-IPK---SLANCAVLEIIDLGNNQIIDTFPAWLGTLS--ELD 195 (485)
Q Consensus 159 -------------------------------------~-~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~ 195 (485)
. .+. ....+.+.+.|++++-+++..+...|..-. -..
T Consensus 312 iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT 391 (565)
T ss_pred HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence 0 000 011233566677776666544333333221 255
Q ss_pred EEEeeccccccccCCccccCCCCCc-cEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCc
Q 039564 196 ILVLQSNNFHGEIKEHKMECGFPKL-RIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH 274 (485)
Q Consensus 196 ~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (485)
..+++.|++. ++|... ..+..+ +.+.+++|.+. .+| .....++.+..++++++-. ..+|.
T Consensus 392 ~VnfskNqL~-elPk~L--~~lkelvT~l~lsnn~is-fv~-~~l~~l~kLt~L~L~NN~L--------------n~LP~ 452 (565)
T KOG0472|consen 392 SVNFSKNQLC-ELPKRL--VELKELVTDLVLSNNKIS-FVP-LELSQLQKLTFLDLSNNLL--------------NDLPE 452 (565)
T ss_pred EEecccchHh-hhhhhh--HHHHHHHHHHHhhcCccc-cch-HHHHhhhcceeeecccchh--------------hhcch
Confidence 5666777665 555443 222222 22334444432 333 2344455555544443211 01111
Q ss_pred ccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCc
Q 039564 275 YYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354 (485)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 354 (485)
... ..-.|+.|+++.|+|. .+|..+..+..++.+-.++|++....|..+..|.+|..|||.+|.
T Consensus 453 e~~---------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 453 EMG---------------SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred hhh---------------hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 111 1223899999999998 899988888889988888899997777779999999999999999
Q ss_pred CcccCcccccCCCCCCEEeccCCccc
Q 039564 355 FSGQIPQQLTGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 355 l~~~~p~~~~~l~~L~~L~l~~N~l~ 380 (485)
+. .+|+.++++++|++|++++|+|.
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC
Confidence 99 88999999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=7.3e-28 Score=239.28 Aligned_cols=243 Identities=26% Similarity=0.374 Sum_probs=170.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
.+|+.++++.|.++ .+|+++..+.+|+.++..+|.+ ..+|..+..+++|+.|.+..|.+. .+|... ..+..|++|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeee
Confidence 46777777777777 4557777777777777777777 445666667777777777777776 555555 567889999
Q ss_pred EccCccCCccCChhhhccccc-ceeccccchhhhhcccccccccccccCc-CcccceEEeeecCcccc---ccccccccc
Q 039564 224 DLSNNSFTGNLPSKYFQCWNA-MKFVNASQLRYMRNFLSSYFSFDFYGYF-PHYYYSLTMSNKGQMLS---YEKIPYILT 298 (485)
Q Consensus 224 ~l~~n~l~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~---~~~~~~~L~ 298 (485)
++..|.+. ..|..++..... +..++.+.++.-.. -+.+.. ...++.+.+.++.+... .......|+
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l--------p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL--------PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc--------ccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 99999887 777765543332 44443332111000 000000 01223333333333322 122366799
Q ss_pred EEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564 299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 299 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 378 (485)
.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|++.|+
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 9999999998444455888999999999999999 78899999999999999999999 777 78999999999999999
Q ss_pred cccc-CCCCCCCCCCCCCCCCCCCCC
Q 039564 379 LTGP-IPEANQFPTFDSSSFDGNSGL 403 (485)
Q Consensus 379 l~~~-~p~~~~~~~l~~~~~~~n~~l 403 (485)
++.. +|.....+.++.+++.||+++
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCccc
Confidence 9863 455555689999999999974
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1.1e-23 Score=215.74 Aligned_cols=263 Identities=25% Similarity=0.304 Sum_probs=186.3
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL 95 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~ 95 (485)
.+-..|+++++.++ .+|..+. ++|+.|++++|+++.+.. ....|++|++++|+|+.. |..+++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSL-PVLPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcc-cCcccccceee
Confidence 45667888888888 7787665 378888999888886532 234458888888888854 55577888888
Q ss_pred ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564 96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175 (485)
Q Consensus 96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 175 (485)
+++|.+. .+|.. ...|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|.. ..+|+.|++
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL----------PPGLQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc----------ccccceeECCCCcccc-CCCC---ccccccccc
Confidence 8888887 45543 256778888888887 56642 2678888888888884 4442 235777888
Q ss_pred cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY 255 (485)
Q Consensus 176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~ 255 (485)
++|.++. +|. ...+|+.|++++|++. .+|.. .++|+.|++++|.+. .+|..
T Consensus 330 s~N~L~~-LP~---lp~~Lq~LdLS~N~Ls-~LP~l-----p~~L~~L~Ls~N~L~-~LP~l------------------ 380 (788)
T PRK15387 330 YNNQLTS-LPT---LPSGLQELSVSDNQLA-SLPTL-----PSELYKLWAYNNRLT-SLPAL------------------ 380 (788)
T ss_pred ccCcccc-ccc---cccccceEecCCCccC-CCCCC-----Ccccceehhhccccc-cCccc------------------
Confidence 8888864 332 1247888888888887 45543 246777888888877 45421
Q ss_pred hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564 256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 335 (485)
+..|+.|++++|.++ .+|.. .++|+.|++++|+++ .+
T Consensus 381 --------------------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sI 417 (788)
T PRK15387 381 --------------------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SL 417 (788)
T ss_pred --------------------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CC
Confidence 123777888888887 35543 357888888888887 45
Q ss_pred CccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC
Q 039564 336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385 (485)
Q Consensus 336 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 385 (485)
|... .+|+.|++++|+++ .+|..+..+++|+.+++++|++++.++.
T Consensus 418 P~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 418 PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Ccch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 6533 46778888888888 6788888888888888888888876543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=8.4e-24 Score=216.57 Aligned_cols=259 Identities=27% Similarity=0.362 Sum_probs=206.0
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
+.|+|+++|+.+. ++|+.|++++|.++ .+|. ..++|++|++++|+++.+.. ....|+.|++++|.+
T Consensus 209 s~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~-----lp~~Lk~LdLs~N~LtsLP~------lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 209 GESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC-----CCCCCcEEEecCCccCcccC------cccccceeeccCCch
Confidence 3578889999886 58999999999999 6775 35799999999999997632 234559999999998
Q ss_pred cccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
+. +|..+.+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+
T Consensus 275 ~~-Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----------p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 275 TH-LPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----------PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred hh-hhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----------cccccccccccCccc-cc
Confidence 84 4456788999999999998 46653 578999999999998 56642 156889999999998 45
Q ss_pred CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564 161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240 (485)
Q Consensus 161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 240 (485)
|.. ..+|++|++++|+++.. |.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|..
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l-----~~~L~~LdLs~N~Lt-~LP~l--- 400 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL-----PSGLKELIVSGNRLT-SLPVL--- 400 (788)
T ss_pred ccc---ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc-----ccccceEEecCCccc-CCCCc---
Confidence 542 25799999999999764 432 367899999999998 46643 257999999999988 45531
Q ss_pred ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564 241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG 320 (485)
Q Consensus 241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 320 (485)
+..|+.|++++|.++ .+|.. ..+
T Consensus 401 -----------------------------------------------------~s~L~~LdLS~N~Ls-sIP~l---~~~ 423 (788)
T PRK15387 401 -----------------------------------------------------PSELKELMVSGNRLT-SLPML---PSG 423 (788)
T ss_pred -----------------------------------------------------ccCCCEEEccCCcCC-CCCcc---hhh
Confidence 223889999999998 46653 356
Q ss_pred CCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccC
Q 039564 321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365 (485)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 365 (485)
|+.|++++|+++ .+|..+..+++|+.|+|++|.+++..+..+..
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 888999999998 78999999999999999999999887776633
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-26 Score=208.88 Aligned_cols=233 Identities=19% Similarity=0.163 Sum_probs=154.8
Q ss_pred CCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccC-CcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 2 SCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSK-NSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 2 ~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
.|+|+.||+ +|+.+++|++||||+|.|+...|++|. ++++|-.|.+-+ |+|+.+.. +.|..+..|+.|.+.-|+
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRLLLNANH 151 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHHhcChhh
Confidence 355666665 666666666666666666666666666 666655555444 66665432 345444444666666666
Q ss_pred ccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc------------ccCCCccccCc-------
Q 039564 80 LQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS------------GELPRCLGNFS------- 137 (485)
Q Consensus 80 l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~------- 137 (485)
+....... ++++..|.+.+|.+...-...|..+..++.+.+..|.+. ...|..++...
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 66554443 677788888888887544447888888888888887632 11122221111
Q ss_pred ------------------------------------ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564 138 ------------------------------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 138 ------------------------------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
..|+.+++|++|+|++|+++++-+.+|.+...+++|.|..|++.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 56777788888888888888777777888888888888888877
Q ss_pred CCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240 (485)
Q Consensus 182 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 240 (485)
......|.++..|++|+|.+|+++...|..| ..+..|.+|++-.|.+.....-.|+.
T Consensus 312 ~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 312 FVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred HHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHH
Confidence 6666777788888888888888876666665 66677788888777776555544443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-24 Score=216.82 Aligned_cols=292 Identities=26% Similarity=0.339 Sum_probs=201.3
Q ss_pred CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC
Q 039564 6 FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP 85 (485)
Q Consensus 6 ~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~ 85 (485)
+.++.++.++++ .|||++|.+. .. .+. .+.+|+.|....|.+.... .....+ +.|+.++|.++...+
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~-~~--dls--~~~~l~~l~c~rn~ls~l~-----~~g~~l-~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME-VL--DLS--NLANLEVLHCERNQLSELE-----ISGPSL-TALYADHNPLTTLDV 236 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh-hh--hhh--hccchhhhhhhhcccceEE-----ecCcch-heeeeccCcceeecc
Confidence 555555555555 5777777766 21 223 4567777777777766442 223344 888888898886555
Q ss_pred CC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccc
Q 039564 86 AP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL 164 (485)
Q Consensus 86 ~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 164 (485)
.. +.+|+++++++|+++ .+|++++.+.+|+.+++.+|+++ .+|..+... .+|+.|.+..|.+. .+|...
T Consensus 237 ~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~-------~~L~~l~~~~nel~-yip~~l 306 (1081)
T KOG0618|consen 237 HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI-------TSLVSLSAAYNELE-YIPPFL 306 (1081)
T ss_pred ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh-------hhHHHHHhhhhhhh-hCCCcc
Confidence 55 889999999999999 57799999999999999999996 777555443 67777777777777 556666
Q ss_pred cCCCCCcEEEccCCcccCCcChhhh-------------------------CCCCCCEEEeeccccccccCCccccCCCCC
Q 039564 165 ANCAVLEIIDLGNNQIIDTFPAWLG-------------------------TLSELDILVLQSNNFHGEIKEHKMECGFPK 219 (485)
Q Consensus 165 ~~l~~L~~L~Ls~n~l~~~~~~~~~-------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 219 (485)
..+++|++|+|..|.+....+..|. .++.|+.|++.+|.++....+.+ .++++
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~h 384 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKH 384 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccc
Confidence 6677777777777776433222222 23346666777777766655555 56677
Q ss_pred ccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564 220 LRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299 (485)
Q Consensus 220 L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 299 (485)
|+.|+|++|++. .+|+..+.++.. |+.
T Consensus 385 LKVLhLsyNrL~-~fpas~~~kle~----------------------------------------------------Lee 411 (1081)
T KOG0618|consen 385 LKVLHLSYNRLN-SFPASKLRKLEE----------------------------------------------------LEE 411 (1081)
T ss_pred eeeeeecccccc-cCCHHHHhchHH----------------------------------------------------hHH
Confidence 777777777776 677665554444 677
Q ss_pred EEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 300 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 378 (485)
|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|+|.|.++...-..-...+.|++||+++|.
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 778888877 67777778888888888888877 666 67777888888888888775432222223678888888886
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=215.53 Aligned_cols=317 Identities=20% Similarity=0.201 Sum_probs=228.7
Q ss_pred CCCChhhhCCC-CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccC
Q 039564 6 FEFPNFLKQQK-HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI 84 (485)
Q Consensus 6 ~~~p~~~~~l~-~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~ 84 (485)
..+|..|..++ +|+.|++.++.+. .+|..|. ..+|+.|++++|.+..+.. ++..+.. |+.|+++++.....+
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~---~~~L~~L~L~~s~l~~L~~--~~~~l~~-Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR---PENLVKLQMQGSKLEKLWD--GVHSLTG-LRNIDLRGSKNLKEI 650 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCC-CCCCcCC---ccCCcEEECcCcccccccc--ccccCCC-CCEEECCCCCCcCcC
Confidence 45777777764 6999999999988 8888774 6899999999999986533 3444444 499999988655556
Q ss_pred CCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564 85 PAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK 162 (485)
Q Consensus 85 ~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~ 162 (485)
|.. +++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.
T Consensus 651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--------~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--------NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--------CCCCCCEEeCCCCCCcccccc
Confidence 654 8999999999998777899999999999999999986555777643 358999999999987656664
Q ss_pred cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccc-------ccCCccccCCCCCccEEEccCccCCccCC
Q 039564 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG-------EIKEHKMECGFPKLRIVDLSNNSFTGNLP 235 (485)
Q Consensus 163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 235 (485)
. ..+|++|++++|.+.. +|..+ .+++|++|.+.++.... ..+... ...++|+.|++++|...+.+|
T Consensus 723 ~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~--~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 723 I---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT--MLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred c---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhh--hccccchheeCCCCCCccccC
Confidence 3 4678999999999854 45443 57888888887644221 111111 345789999999998776788
Q ss_pred hhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhh
Q 039564 236 SKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSI 315 (485)
Q Consensus 236 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 315 (485)
.. +..+++|+.+++.++..+..++... .+++|+.|++++|.....+|..
T Consensus 796 ~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------------~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 796 SS-IQNLHKLEHLEIENCINLETLPTGI-----------------------------NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred hh-hhCCCCCCEEECCCCCCcCeeCCCC-----------------------------CccccCEEECCCCCcccccccc-
Confidence 65 7788888888887665443321110 1445777777776544444432
Q ss_pred ccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564 316 ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 316 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 378 (485)
.++|+.|+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 356777777777776 667777777777777777753333566666777777777777764
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=214.59 Aligned_cols=342 Identities=15% Similarity=0.176 Sum_probs=192.0
Q ss_pred cccccCCCCCCcEEEccCCcC------cCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCcccccCC
Q 039564 34 KWLLNPSMQNFSYLNLSKNSL------TGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIP 106 (485)
Q Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p 106 (485)
.+|. +|++|+.|.+..+.. ....|. ++..+...|+.|++.++.+...+... +.+|++|++.+|.+. .++
T Consensus 552 ~aF~--~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 552 NAFK--GMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHh--cCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence 3455 667777777654432 112222 33344444577777777665443333 667777777777766 466
Q ss_pred hhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh
Q 039564 107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186 (485)
Q Consensus 107 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 186 (485)
..+..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 6666777777777776654435553 23346777777777765556777777777777777777654455554
Q ss_pred hhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccc
Q 039564 187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSF 266 (485)
Q Consensus 187 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 266 (485)
.+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|... .+.+|..+.+..+...... ......
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~-~~~~~l 769 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLW-ERVQPL 769 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc--cccccccccccccchhhcc-cccccc
Confidence 43 5677777777777655444432 246777777777765 555432 3444554444332111000 000000
Q ss_pred -ccccCcCcccceEEeeecCccccc---ccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCC
Q 039564 267 -DFYGYFPHYYYSLTMSNKGQMLSY---EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL 342 (485)
Q Consensus 267 -~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 342 (485)
......+..+..+.+.++...... ...++.|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---c
Confidence 000011222333333333221111 1224556777776665444555544 5667777777776544344432 3
Q ss_pred CCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC-CCCCCCCCCCCCCCCCC
Q 039564 343 TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE-ANQFPTFDSSSFDGNSG 402 (485)
Q Consensus 343 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~ 402 (485)
.+|+.|+|++|.++ .+|.++..+++|+.|++++|.-...+|. ...+..+..+.+.+++.
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 56888888888887 6788888999999999998543333443 24455555555555543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=9.2e-25 Score=198.00 Aligned_cols=312 Identities=20% Similarity=0.196 Sum_probs=215.5
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
-..+.++-.++..+...++...+++|..|.|+...|.+|+.+++|+.|||++|+|+..-| ++|.+++++.+|-
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-------~AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-------DAFKGLASLLSLV 121 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-------HhhhhhHhhhHHH
Confidence 467777777775555558899999999999998888899999999999999999995556 5566677777766
Q ss_pred cc-CCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCC-ccccCCCCCccEEEccCc
Q 039564 151 MS-HNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVDLSNN 228 (485)
Q Consensus 151 Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n 228 (485)
+- +|+|+....+.|.++.+|+.|.+..|++.-+..++|..+++|..|.+..|.+. .++. .+ ..+..++.+.+..|
T Consensus 122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf--~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF--QGLAAIKTLHLAQN 198 (498)
T ss_pred hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccc--cchhccchHhhhcC
Confidence 54 49999777788999999999999999999999999999999999999999988 5555 44 67888999999988
Q ss_pred cCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCc
Q 039564 229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH 308 (485)
Q Consensus 229 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 308 (485)
.+.....-.|......+.....+..+...... .....+...+ .. .+......+..-..+.+...
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~r---l~~~Ri~q~~---------a~----kf~c~~esl~s~~~~~d~~d 262 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYR---LYYKRINQED---------AR----KFLCSLESLPSRLSSEDFPD 262 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHH---HHHHHhcccc---------hh----hhhhhHHhHHHhhccccCcC
Confidence 85432211111100000000000000000000 0000000000 00 00000011111111222233
Q ss_pred ccCc-hhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-
Q 039564 309 GEIP-TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA- 386 (485)
Q Consensus 309 ~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~- 386 (485)
++-| ..|..+++|+.|+|++|+++++-+.+|.+...++.|.|..|+|...-...|..+..|+.|+|.+|+|+...|..
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 3444 34888999999999999999888889999999999999999998777778888999999999999998877755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 039564 387 NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 387 ~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
.....+..+.+-+|||.|+|.+
T Consensus 343 ~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred cccceeeeeehccCcccCccch
Confidence 3445567777888999998876
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=1.9e-21 Score=200.55 Aligned_cols=247 Identities=26% Similarity=0.364 Sum_probs=181.6
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL 95 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~ 95 (485)
.+.+.|++++++++ .+|..+. ++|+.|++++|+++.+... ++ ..|++|++++|.++......+..|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~--l~---~nL~~L~Ls~N~LtsLP~~l~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPEN--LQ---GNIKTLYANSNQLTSIPATLPDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChh--hc---cCCCEEECCCCccccCChhhhccccEEE
Confidence 46788999999888 6777654 4789999999999875332 33 2459999999998865434467899999
Q ss_pred ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564 96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175 (485)
Q Consensus 96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 175 (485)
+++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---------~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---------EELRYLSVYDNSIR-TLPAHLP--SGITHLNV 311 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---------CCCcEEECCCCccc-cCcccch--hhHHHHHh
Confidence 9999988 6777664 57899999999888 6776432 57899999999988 4555443 47888999
Q ss_pred cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY 255 (485)
Q Consensus 176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~ 255 (485)
++|.++.. |..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.+. .+|..+
T Consensus 312 s~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l----~~sL~~L~Ls~N~L~-~LP~~l----------------- 365 (754)
T PRK15370 312 QSNSLTAL-PETL--PPGLKTLEAGENALT-SLPASL----PPELQVLDVSKNQIT-VLPETL----------------- 365 (754)
T ss_pred cCCccccC-Cccc--cccceeccccCCccc-cCChhh----cCcccEEECCCCCCC-cCChhh-----------------
Confidence 99988753 4333 368999999999887 466554 368999999999887 566432
Q ss_pred hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564 256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 335 (485)
++.|+.|++++|.++ .+|..+. ..|+.|++++|+++ .+
T Consensus 366 --------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~L 403 (754)
T PRK15370 366 --------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RL 403 (754)
T ss_pred --------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cC
Confidence 223788888888887 5565543 36888888888887 44
Q ss_pred Ccc----ccCCCCCCEEECCCCcCc
Q 039564 336 PSC----FGDLTKLESLDLSNNWFS 356 (485)
Q Consensus 336 p~~----~~~l~~L~~L~Ls~N~l~ 356 (485)
|.. +..++.+..|++.+|.++
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCcc
Confidence 543 344577888888888887
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=2.3e-21 Score=199.98 Aligned_cols=247 Identities=25% Similarity=0.334 Sum_probs=156.6
Q ss_pred CCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 039564 42 QNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121 (485)
Q Consensus 42 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 121 (485)
.+...|++++++++.++. .+ ...++.|++++|+++........+|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~--~I---p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA--CI---PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCc--cc---ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 346677777777776432 12 233477777777777544444667777777777777 4565443 467777777
Q ss_pred cCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS 201 (485)
Q Consensus 122 ~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 201 (485)
+|.+. .+|..+. .+|+.|++++|.++ .+|+.+. ++|++|++++|+++.. |..+. ++|+.|++++
T Consensus 250 ~N~L~-~LP~~l~---------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 250 INRIT-ELPERLP---------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQS 313 (754)
T ss_pred CCccC-cCChhHh---------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcC
Confidence 77776 6665432 46777777777777 4565543 4677777777777543 33222 3677777777
Q ss_pred cccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEe
Q 039564 202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM 281 (485)
Q Consensus 202 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (485)
|.+. .+|..+ .++|+.|++++|.++ .+|..+
T Consensus 314 N~Lt-~LP~~l----~~sL~~L~Ls~N~Lt-~LP~~l------------------------------------------- 344 (754)
T PRK15370 314 NSLT-ALPETL----PPGLKTLEAGENALT-SLPASL------------------------------------------- 344 (754)
T ss_pred Cccc-cCCccc----cccceeccccCCccc-cCChhh-------------------------------------------
Confidence 7776 344433 256777777777776 344321
Q ss_pred eecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcc
Q 039564 282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ 361 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 361 (485)
++.|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. .+|+.|++++|++. .+|.
T Consensus 345 ------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 345 ------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred ------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch
Confidence 123777777777776 4555442 57777777777777 4555443 35777777777777 4444
Q ss_pred c----ccCCCCCCEEeccCCccc
Q 039564 362 Q----LTGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 362 ~----~~~l~~L~~L~l~~N~l~ 380 (485)
. +..++.+..+++.+|+++
T Consensus 406 sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCCcc
Confidence 3 334466777777777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.4e-19 Score=173.60 Aligned_cols=189 Identities=24% Similarity=0.225 Sum_probs=85.8
Q ss_pred EEECCCCcCCC-CCCcccccCCCCCCcEEEccCCcCcCcCCC--CCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEc
Q 039564 20 ALDLSSNKLHG-NIPKWLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV 96 (485)
Q Consensus 20 ~L~Ls~n~~~~-~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l 96 (485)
.|+|..+.+++ .....+. .+.+|+.|+++++.++..... +......+.+++++++++.+.+. +
T Consensus 2 ~l~L~~~~l~~~~~~~~~~--~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~----------- 67 (319)
T cd00116 2 QLSLKGELLKTERATELLP--KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P----------- 67 (319)
T ss_pred ccccccCcccccchHHHHH--HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c-----------
Confidence 35666666652 2223333 456677777777766431100 00111122225555555443310 0
Q ss_pred cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc----cCCccccCC-CCCc
Q 039564 97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG----RIPKSLANC-AVLE 171 (485)
Q Consensus 97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l-~~L~ 171 (485)
.....++..+..+++|+.|++++|.+.+..+..+..+ ... ++|++|++++|.+++ .+...+..+ ++|+
T Consensus 68 ---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 68 ---RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL---LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ---hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH---hcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 0001233445555666666666666553333333222 111 346666666666552 122233444 5666
Q ss_pred EEEccCCcccCC----cChhhhCCCCCCEEEeeccccccc----cCCccccCCCCCccEEEccCccCC
Q 039564 172 IIDLGNNQIIDT----FPAWLGTLSELDILVLQSNNFHGE----IKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 172 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
.|++++|.+++. .+..+..+++|++|++++|.+.+. ++..+ ..+++|+.|++++|.+.
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL--KANCNLEVLDLNNNGLT 206 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH--HhCCCCCEEeccCCccC
Confidence 666666665522 222344455566666666655531 11111 22345666666655554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.3e-19 Score=172.03 Aligned_cols=265 Identities=24% Similarity=0.228 Sum_probs=174.2
Q ss_pred CCCCcEEEccCCcccc----cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc
Q 039564 88 PTKTRHYLVSKNNLTG----EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 163 (485)
...|++|+++++.++. .++..+...++|+.++++++.+.+ .+..+..+...+..+++|+.|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3446666666666642 245556677889999999887762 34444433355666789999999999998666666
Q ss_pred ccCCCC---CcEEEccCCcccC----CcChhhhCC-CCCCEEEeeccccccccCCcc--ccCCCCCccEEEccCccCCcc
Q 039564 164 LANCAV---LEIIDLGNNQIID----TFPAWLGTL-SELDILVLQSNNFHGEIKEHK--MECGFPKLRIVDLSNNSFTGN 233 (485)
Q Consensus 164 ~~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 233 (485)
+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++.....+ ....+++|+.|++++|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 555554 9999999998863 223345566 899999999999874322211 114567899999999988742
Q ss_pred CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc---
Q 039564 234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE--- 310 (485)
Q Consensus 234 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--- 310 (485)
....+...+.. .+.|+.|++++|.+.+.
T Consensus 181 ~~~~l~~~l~~-------------------------------------------------~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 181 GIRALAEGLKA-------------------------------------------------NCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHHHHHHHHHh-------------------------------------------------CCCCCEEeccCCccChHHHH
Confidence 11111111110 13488899999988643
Q ss_pred -CchhhccCCCCCEEeCcCceecccCCcccc-----CCCCCCEEECCCCcCcc----cCcccccCCCCCCEEeccCCccc
Q 039564 311 -IPTSIANLKGLQVLSLANNNLEGHIPSCFG-----DLTKLESLDLSNNWFSG----QIPQQLTGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 311 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~ 380 (485)
+...+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..++.|+.+++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 334566788899999999988753332222 23789999999999872 23445666788999999999987
Q ss_pred cc----CCCC-CCC-CCCCCCCCCCCCC
Q 039564 381 GP----IPEA-NQF-PTFDSSSFDGNSG 402 (485)
Q Consensus 381 ~~----~p~~-~~~-~~l~~~~~~~n~~ 402 (485)
.. .... ..+ ..+..+++.+||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 43 1111 122 3455666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-19 Score=145.08 Aligned_cols=164 Identities=34% Similarity=0.587 Sum_probs=126.9
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCcc
Q 039564 142 NGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLR 221 (485)
Q Consensus 142 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 221 (485)
.+..++.|.+|+|+++ .+|..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..| +.+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhh
Confidence 3467777788888887 67777888888888888888874 45666788888888888888876 677777 7788888
Q ss_pred EEEccCccCCc-cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEE
Q 039564 222 IVDLSNNSFTG-NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAV 300 (485)
Q Consensus 222 ~L~l~~n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L 300 (485)
.||+.+|.+.. .+|+.+|. +..|+.|
T Consensus 106 vldltynnl~e~~lpgnff~-----------------------------------------------------m~tlral 132 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRAL 132 (264)
T ss_pred hhhccccccccccCCcchhH-----------------------------------------------------HHHHHHH
Confidence 88888887764 34554432 2237777
Q ss_pred EcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCC
Q 039564 301 ILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL 366 (485)
Q Consensus 301 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 366 (485)
+|++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|+.|.+.+|+++ .+|..++++
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 88888887 78888899999999999999887 78888889999999999999998 666655544
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=4e-16 Score=160.74 Aligned_cols=118 Identities=39% Similarity=0.702 Sum_probs=106.4
Q ss_pred cccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564 296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375 (485)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 375 (485)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 376 HNNLTGPIPEAN--QFPTFDSSSFDGNSGLCGKPLFKECE 413 (485)
Q Consensus 376 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~c~ 413 (485)
+|+++|.+|... .......+.+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 22344567899999999987656663
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6e-18 Score=136.84 Aligned_cols=154 Identities=31% Similarity=0.500 Sum_probs=74.7
Q ss_pred CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 039564 41 MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL 120 (485)
Q Consensus 41 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 120 (485)
+.+...|.||+|+++.+.|. +..+.++ +.|++++|+|+ .+|..++.+++|+.|++
T Consensus 32 ~s~ITrLtLSHNKl~~vppn--ia~l~nl-evln~~nnqie----------------------~lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPN--IAELKNL-EVLNLSNNQIE----------------------ELPTSISSLPKLRILNV 86 (264)
T ss_pred hhhhhhhhcccCceeecCCc--HHHhhhh-hhhhcccchhh----------------------hcChhhhhchhhhheec
Confidence 45555566666666554432 4444444 55555555555 34444444555555555
Q ss_pred ccCcccccCCCccccCcccccCCCCccEEEccCCcccc-cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEe
Q 039564 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVL 199 (485)
Q Consensus 121 ~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 199 (485)
+-|++. ..|..+|.+ +.|+.||+++|.+.. ..|..|..++.|+.|+|++|.+ ..+|..++.+++|+.|.+
T Consensus 87 gmnrl~-~lprgfgs~-------p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 87 GMNRLN-ILPRGFGSF-------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSL 157 (264)
T ss_pred chhhhh-cCccccCCC-------chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEee
Confidence 444444 444433332 444555554444432 2344444444455555555544 333444455555555555
Q ss_pred eccccccccCCccccCCCCCccEEEccCccCC
Q 039564 200 QSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 200 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
..|.+. .+|.++ +.+..|++|.+.+|+++
T Consensus 158 rdndll-~lpkei--g~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 158 RDNDLL-SLPKEI--GDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccCchh-hCcHHH--HHHHHHHHHhcccceee
Confidence 555444 444444 44445555555555544
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=3.9e-14 Score=135.26 Aligned_cols=172 Identities=28% Similarity=0.430 Sum_probs=89.9
Q ss_pred CccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEE
Q 039564 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224 (485)
Q Consensus 145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 224 (485)
.-...|++.|++. .+|..+..+..|+.+.|..|.+ ..+|.++..+..|.+|+++.|+++ .+|..+ +.++ |+.|-
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l--C~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGL--CDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhh--hcCc-ceeEE
Confidence 3344555555555 4555555555555555555555 344445555555555555555554 444444 3333 55555
Q ss_pred ccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCC
Q 039564 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS 304 (485)
Q Consensus 225 l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 304 (485)
+++|+++ .+|..+- . ...|..||.+.
T Consensus 150 ~sNNkl~-~lp~~ig-~----------------------------------------------------~~tl~~ld~s~ 175 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-L----------------------------------------------------LPTLAHLDVSK 175 (722)
T ss_pred EecCccc-cCCcccc-c----------------------------------------------------chhHHHhhhhh
Confidence 5555554 4443210 0 12244455555
Q ss_pred CcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccc
Q 039564 305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 305 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 380 (485)
|.+. .+|..++++.+|+.|++..|++. .+|..+..++ |..||+|+|+++ .+|-.|..++.|++|-|.+|+++
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 5554 45555555555666666666555 4455555433 555666666665 55555666666666666666554
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=6.1e-12 Score=129.93 Aligned_cols=91 Identities=36% Similarity=0.573 Sum_probs=82.2
Q ss_pred cccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCC-CCCCEE
Q 039564 294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL-TFLEFF 372 (485)
Q Consensus 294 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L 372 (485)
++.|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++.+|..+... ..+..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 4459999999999999999999999999999999999999999999999999999999999999999988763 467789
Q ss_pred eccCCcccccCC
Q 039564 373 NVSHNNLTGPIP 384 (485)
Q Consensus 373 ~l~~N~l~~~~p 384 (485)
++.+|...+..|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999998776544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=5e-14 Score=134.51 Aligned_cols=194 Identities=25% Similarity=0.401 Sum_probs=129.1
Q ss_pred CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564 88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 167 (485)
+..-...+++.|.+. .+|..++.+..|+.+.|..|.+. .+|..++++ ..|+.|+|+.|+++ ..|..++.+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L-------~~lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNL-------EALTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhh-------hHHHHhhhccchhh-cCChhhhcC
Confidence 444455666777766 67777777777777777777776 677666554 66777777777777 666666666
Q ss_pred CCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhccccccee
Q 039564 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247 (485)
Q Consensus 168 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 247 (485)
+ |+.|-+++|++ +.+|..++.++.|..|+.+.|.+. .+|..+ +++.+|+.|.+..|.+. .+|.... .+
T Consensus 144 p-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql--~~l~slr~l~vrRn~l~-~lp~El~-~L----- 211 (722)
T KOG0532|consen 144 P-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL--GYLTSLRDLNVRRNHLE-DLPEELC-SL----- 211 (722)
T ss_pred c-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhh-hchHHh--hhHHHHHHHHHhhhhhh-hCCHHHh-CC-----
Confidence 5 77777777777 445555666677777777777776 555555 66777777777777766 5554321 11
Q ss_pred ccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCc
Q 039564 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA 327 (485)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 327 (485)
.|..||+|+|++. .+|..|..|.+|++|-|.
T Consensus 212 ------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 212 ------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ------------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeeec
Confidence 1777888888887 778888888888888888
Q ss_pred CceecccCCcccc---CCCCCCEEECCCC
Q 039564 328 NNNLEGHIPSCFG---DLTKLESLDLSNN 353 (485)
Q Consensus 328 ~N~l~~~~p~~~~---~l~~L~~L~Ls~N 353 (485)
+|.+. ..|..+. ...--++|+..-+
T Consensus 243 nNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 243 NNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88887 5554432 2233455666555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=7.8e-12 Score=123.38 Aligned_cols=82 Identities=44% Similarity=0.612 Sum_probs=38.2
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 376 (485)
|+.+.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++. ++. +..+..++.+++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccC
Confidence 334444444322 33334444455555555555544 224444455555555555555552 222 44555555555555
Q ss_pred Cccccc
Q 039564 377 NNLTGP 382 (485)
Q Consensus 377 N~l~~~ 382 (485)
|.++..
T Consensus 287 n~~~~~ 292 (394)
T COG4886 287 NSLSNA 292 (394)
T ss_pred cccccc
Confidence 555433
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.9e-11 Score=120.72 Aligned_cols=197 Identities=34% Similarity=0.450 Sum_probs=154.0
Q ss_pred EEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCC-CCccEEEcCCCcccccC--CCCCCCCcEEEc
Q 039564 20 ALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS-SGEFTLDLSSNFLQGPI--PAPPTKTRHYLV 96 (485)
Q Consensus 20 ~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~lL~~L~l~~n~l~~~~--~~~~~~L~~L~l 96 (485)
.++++.+.+..... .+. .++.++.|++.+|.++.+.+. .... ..|+.|++++|.+.... -..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~~-~~~--~~~~l~~L~l~~n~i~~i~~~---~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELL--ELTNLTSLDLDNNNITDIPPL---IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCch-hhh--cccceeEEecCCcccccCccc---cccchhhcccccccccchhhhhhhhhcccccccccc
Confidence 58888888752333 333 567899999999999987654 3344 24499999999998762 334999999999
Q ss_pred cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEcc
Q 039564 97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176 (485)
Q Consensus 97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 176 (485)
++|++. .+|...+..+.|+.|++++|.+. .+|..++. ...|+++++++|.+. ..+..+..+.++..+.+.
T Consensus 171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-------hhhhhhhhhcCCcce-ecchhhhhcccccccccC
Confidence 999998 67766668899999999999998 77764322 256999999999655 577788899999999999
Q ss_pred CCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237 (485)
Q Consensus 177 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 237 (485)
+|++.. .+..++.++++++|++++|.+. .++. + ..+.+++.|++++|.+....+..
T Consensus 241 ~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~--~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 241 NNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-L--GSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred Cceeee-ccchhccccccceecccccccc-cccc-c--cccCccCEEeccCccccccchhh
Confidence 998854 3667888999999999999998 4444 4 67899999999999988555543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=1.9e-12 Score=117.03 Aligned_cols=243 Identities=21% Similarity=0.226 Sum_probs=145.3
Q ss_pred CCCCcEEEccCCcccccC----ChhhcCCCCCCEEEcccC---cccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 88 PTKTRHYLVSKNNLTGEI----PSWICNLSSLYILDLSDN---NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
...++.+++++|.+.... ...+.+.++|+..++++- +....+|..+.-+..++.+.+.|++++||+|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 567778888888776433 234556678888887764 2223456666555566677778888888888886544
Q ss_pred Ccc----ccCCCCCcEEEccCCcccCCcChh-------------hhCCCCCCEEEeeccccccccCCcc--ccCCCCCcc
Q 039564 161 PKS----LANCAVLEIIDLGNNQIIDTFPAW-------------LGTLSELDILVLQSNNFHGEIKEHK--MECGFPKLR 221 (485)
Q Consensus 161 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~ 221 (485)
+.. +..+..|++|.|.+|.+...-... .+.-++|+++....|.+...-...+ .+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 346778888888888763221111 1223566666666666542211110 113446667
Q ss_pred EEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEE
Q 039564 222 IVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI 301 (485)
Q Consensus 222 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 301 (485)
.+.+++|.+...--...+..+ ..++.|+.||
T Consensus 189 evr~~qN~I~~eG~~al~eal-------------------------------------------------~~~~~LevLd 219 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEAL-------------------------------------------------EHCPHLEVLD 219 (382)
T ss_pred eEEEecccccCchhHHHHHHH-------------------------------------------------HhCCcceeee
Confidence 777776665421110100000 0134477777
Q ss_pred cCCCcCccc----CchhhccCCCCCEEeCcCceecccCCccc-----cCCCCCCEEECCCCcCccc----CcccccCCCC
Q 039564 302 LSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCF-----GDLTKLESLDLSNNWFSGQ----IPQQLTGLTF 368 (485)
Q Consensus 302 Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 368 (485)
|.+|-++.. +...+..+++|+.|++++|.+...-..+| ...+.|++|.+.+|.++.. +-......+.
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 777776643 33445667788888888887764333222 2467888888888888742 2233455778
Q ss_pred CCEEeccCCcc
Q 039564 369 LEFFNVSHNNL 379 (485)
Q Consensus 369 L~~L~l~~N~l 379 (485)
|..|+|++|.+
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 88888888887
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.5e-12 Score=116.26 Aligned_cols=207 Identities=19% Similarity=0.189 Sum_probs=114.5
Q ss_pred CCccEEEccCCcccccCC--ccccCCCCCcEEEccCCcccCCcC--hhhhCCCCCCEEEeeccccccccCCccccCCCCC
Q 039564 144 SNLGIIDMSHNLLQGRIP--KSLANCAVLEIIDLGNNQIIDTFP--AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPK 219 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 219 (485)
.+|+++.|.++... ..+ .....+++++.|||+.|-+....+ .....+++|+.|+++.|.+........ ...+++
T Consensus 121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSH 198 (505)
T ss_pred HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhh
Confidence 44555555555544 222 233455666666666665543322 223356666666666666542222221 134556
Q ss_pred ccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564 220 LRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299 (485)
Q Consensus 220 L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 299 (485)
|+.|.++.|+++-.--..+...++++..+.+..+..... .......+..|+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------------------------~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------------------------KATSTKILQTLQE 250 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------------------------ecchhhhhhHHhh
Confidence 666666666655222222333444444444433210000 0001112455888
Q ss_pred EEcCCCcCcccC-chhhccCCCCCEEeCcCceeccc-CCcc-----ccCCCCCCEEECCCCcCcccCc--ccccCCCCCC
Q 039564 300 VILSSNGFHGEI-PTSIANLKGLQVLSLANNNLEGH-IPSC-----FGDLTKLESLDLSNNWFSGQIP--QQLTGLTFLE 370 (485)
Q Consensus 300 L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~ 370 (485)
|||++|++.... -...+.++.|..|+++.+.+... .|++ ...+++|++|+++.|++.. .+ ..+..+++|+
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLK 329 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhh
Confidence 999998876322 24467788899999998887643 3333 3457889999999999852 22 3345567788
Q ss_pred EEeccCCcccc
Q 039564 371 FFNVSHNNLTG 381 (485)
Q Consensus 371 ~L~l~~N~l~~ 381 (485)
.+.+..|.++.
T Consensus 330 ~l~~~~n~ln~ 340 (505)
T KOG3207|consen 330 HLRITLNYLNK 340 (505)
T ss_pred hhhcccccccc
Confidence 88888888874
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=9.6e-12 Score=110.09 Aligned_cols=199 Identities=22% Similarity=0.206 Sum_probs=135.0
Q ss_pred CCCCCEEECCCC--------cCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccccc---
Q 039564 15 QKHLKALDLSSN--------KLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGP--- 83 (485)
Q Consensus 15 l~~L~~L~Ls~n--------~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~--- 83 (485)
+..|.+|-.++. -+...+|-.+. .+++|..+.+|++.-..+.. +....+-|+++...+..++..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~--~f~~l~~~~~s~~~~~~i~~---~~~~kptl~t~~v~~s~~~~~~~l 255 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLN--AFRNLKTLKFSALSTENIVD---IELLKPTLQTICVHNTTIQDVPSL 255 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchH--Hhhhhheeeeeccchhheec---eeecCchhheeeeecccccccccc
Confidence 456666666643 12223333333 45677777777765433221 222333336666665544321
Q ss_pred CCC-----------------------CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccc
Q 039564 84 IPA-----------------------PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTF 140 (485)
Q Consensus 84 ~~~-----------------------~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~ 140 (485)
.|. .-..|+++|+++|.|+ .+...+.-.|.++.|++++|.+. .+ +.+
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v--------~nL 325 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV--------QNL 325 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee--------hhh
Confidence 111 1457899999999998 67777888899999999999987 33 224
Q ss_pred cCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCc
Q 039564 141 MNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKL 220 (485)
Q Consensus 141 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 220 (485)
+.+++|+.||||+|.++ .+..+-..+.++++|.|+.|.+... +.++.+-+|..|++++|++. .+...-..+.+|.|
T Consensus 326 a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCL 401 (490)
T ss_pred hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHH
Confidence 56689999999999988 5555556788999999999988543 44677888999999999987 44333223789999
Q ss_pred cEEEccCccCCc
Q 039564 221 RIVDLSNNSFTG 232 (485)
Q Consensus 221 ~~L~l~~n~l~~ 232 (485)
+.+.+.+|++.+
T Consensus 402 E~l~L~~NPl~~ 413 (490)
T KOG1259|consen 402 ETLRLTGNPLAG 413 (490)
T ss_pred HHHhhcCCCccc
Confidence 999999999983
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.9e-12 Score=115.78 Aligned_cols=207 Identities=18% Similarity=0.199 Sum_probs=116.7
Q ss_pred hCCCCCCEEECCCCcCCCCCC--cccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---
Q 039564 13 KQQKHLKALDLSSNKLHGNIP--KWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP--- 87 (485)
Q Consensus 13 ~~l~~L~~L~Ls~n~~~~~~p--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~--- 87 (485)
.++++|+...|.+..+. ..+ .... .|++++.||||+|-++...+...+...++.|+.|+++.|++.......
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k--~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSK--ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhh--hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 35667777777776665 222 1233 567777777777766543222123333444477777777665433322
Q ss_pred -CCCCcEEEccCCccccc-CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC--cc
Q 039564 88 -PTKTRHYLVSKNNLTGE-IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP--KS 163 (485)
Q Consensus 88 -~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~--~~ 163 (485)
++.|+.|.++.|.++-. +-.....+|+|+.|+|..|......- .....++.|++|||++|.+.+ .+ ..
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-------~~~~i~~~L~~LdLs~N~li~-~~~~~~ 266 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA-------TSTKILQTLQELDLSNNNLID-FDQGYK 266 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec-------chhhhhhHHhhccccCCcccc-cccccc
Confidence 66777777777777621 12223456777777777774211111 112234667777777777662 33 34
Q ss_pred ccCCCCCcEEEccCCcccCC-cChh-----hhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564 164 LANCAVLEIIDLGNNQIIDT-FPAW-----LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 164 ~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
...++.|+.|+++.+.+..+ .|+. ...+++|++|++..|++. ..+..--...+++|+.|.+..|.+.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 55677777777777776543 1222 235677777887777774 2222111134567777777777665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.7e-11 Score=100.34 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=12.7
Q ss_pred ccCCCCCcEEEccCCcccCCcC---hhhhCCCCCCEEE
Q 039564 164 LANCAVLEIIDLGNNQIIDTFP---AWLGTLSELDILV 198 (485)
Q Consensus 164 ~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~ 198 (485)
+..+++|++|++.+|+++...- ..+..+|+|+.||
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 3445555555555555543211 1244556666654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=4e-11 Score=101.67 Aligned_cols=104 Identities=30% Similarity=0.386 Sum_probs=25.2
Q ss_pred CCcEEEccCCcccccCChhhc-CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccc-cCC
Q 039564 90 KTRHYLVSKNNLTGEIPSWIC-NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANC 167 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l 167 (485)
.+++|+|++|.|+. +. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+|+. +.+.+ ..+
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~--------~l~~L~~L~~L~L~~N~I~~-i~~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE--------GLPGLPRLKTLDLSNNRISS-ISEGLDKNL 87 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T--------T----TT--EEE--SS---S--CHHHHHH-
T ss_pred cccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc--------CccChhhhhhcccCCCCCCc-cccchHHhC
Confidence 34444444444442 11 222 3455555555555555 221 12334555555555555552 22223 235
Q ss_pred CCCcEEEccCCcccCCc-ChhhhCCCCCCEEEeeccccc
Q 039564 168 AVLEIIDLGNNQIIDTF-PAWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 168 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 205 (485)
++|++|++++|+|.... -..+..+++|+.|++.+|++.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555555555554321 133445555555555555554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.5e-11 Score=107.50 Aligned_cols=132 Identities=30% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccc
Q 039564 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFY 269 (485)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 269 (485)
....|++++|++|.++ .+..+. .-.|.++.|++++|++. .+.. +.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESv--KL~Pkir~L~lS~N~i~-~v~n--La----------------------------- 326 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESV--KLAPKLRRLILSQNRIR-TVQN--LA----------------------------- 326 (490)
T ss_pred hHhhhhhccccccchh-hhhhhh--hhccceeEEecccccee-eehh--hh-----------------------------
Confidence 3456777888888776 555554 55678888888888776 2221 11
Q ss_pred cCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEE
Q 039564 270 GYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLD 349 (485)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 349 (485)
.+++|+.||||+|.++ .+..+-..+-++++|.|+.|.+... ..+..+-+|..||
T Consensus 327 -----------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 327 -----------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD 380 (490)
T ss_pred -----------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence 1344788888888777 5555556778888999999887522 3467788889999
Q ss_pred CCCCcCcccC-cccccCCCCCCEEeccCCccccc
Q 039564 350 LSNNWFSGQI-PQQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 350 Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
+++|+|.... -..++++|.|+.+.|.+|++.+.
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999887532 24678899999999999988753
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=3.6e-10 Score=78.81 Aligned_cols=61 Identities=39% Similarity=0.627 Sum_probs=39.4
Q ss_pred CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564 319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379 (485)
Q Consensus 319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 379 (485)
++|++|++++|+++...+..|..+++|++|++++|.+....|+.|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655555666666666666666666655556666666666666666654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.1e-09 Score=76.25 Aligned_cols=59 Identities=37% Similarity=0.491 Sum_probs=35.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccc
Q 039564 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203 (485)
Q Consensus 145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 203 (485)
+|++|++++|.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666664444555666666666666666655555566666666666666554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=1.5e-10 Score=104.94 Aligned_cols=214 Identities=20% Similarity=0.287 Sum_probs=135.7
Q ss_pred hhhCCCCCCEEECCCC---cCCCCCCc-------ccccCCCCCCcEEEccCCcCcCcCC--CCCCCCCCCCccEEEcCCC
Q 039564 11 FLKQQKHLKALDLSSN---KLHGNIPK-------WLLNPSMQNFSYLNLSKNSLTGFDQ--HPSVFPWSSGEFTLDLSSN 78 (485)
Q Consensus 11 ~~~~l~~L~~L~Ls~n---~~~~~~p~-------~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~lL~~L~l~~n 78 (485)
.+.+.++|+.-++|.- +....+|+ .+. .+++|++||||+|.|.--.+ ..++......|++|.|.+|
T Consensus 53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~--~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALL--GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHh--cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 4455566666666542 23334443 222 34566777777666542111 0011222333366667666
Q ss_pred ccccc----------------CCCCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcc
Q 039564 79 FLQGP----------------IPAPPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSD 138 (485)
Q Consensus 79 ~l~~~----------------~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 138 (485)
.+.-. .....+.|+.+...+|.+... +...|...+.|+.+.+.+|.|. |..+..+..
T Consensus 131 Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~---~eG~~al~e 207 (382)
T KOG1909|consen 131 GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR---PEGVTALAE 207 (382)
T ss_pred CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc---CchhHHHHH
Confidence 65411 011267888999888888632 2345677789999999999765 333333336
Q ss_pred cccCCCCccEEEccCCccccc----CCccccCCCCCcEEEccCCcccCCcChhhh-----CCCCCCEEEeecccccccc-
Q 039564 139 TFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQIIDTFPAWLG-----TLSELDILVLQSNNFHGEI- 208 (485)
Q Consensus 139 ~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~- 208 (485)
.|..++.|++|||.+|.++.. +...+..+++|+.|++++|.+...-..+|. ..++|+.|.+.+|.++..-
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 677889999999999998743 345667788999999999988755443332 4689999999999886321
Q ss_pred ---CCccccCCCCCccEEEccCccCC
Q 039564 209 ---KEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 209 ---~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
.... ...+.|+.|++++|.+.
T Consensus 288 ~~la~~~--~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 288 LALAACM--AEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHH--hcchhhHHhcCCccccc
Confidence 1112 34688999999999984
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3.9e-10 Score=111.56 Aligned_cols=241 Identities=23% Similarity=0.246 Sum_probs=128.8
Q ss_pred cEEEcCCCcccccCC--CCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccE
Q 039564 71 FTLDLSSNFLQGPIP--APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGI 148 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~ 148 (485)
+.+.+..|.+..... ..+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~---------~l~~l~~L~~ 144 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE---------GLSTLTLLKE 144 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc---------chhhccchhh
Confidence 555555555554222 125566666666666652 2222455666666666666665221 1223345666
Q ss_pred EEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccC
Q 039564 149 IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN 227 (485)
Q Consensus 149 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 227 (485)
|++++|.|.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. +... ..+..+..+++..
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~---~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGL---DLLKKLVLLSLLD 217 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccch---HHHHHHHHhhccc
Confidence 6666666652 2334445666666666666654433 1 3445555566666655541 1111 1122333334444
Q ss_pred ccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcC
Q 039564 228 NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307 (485)
Q Consensus 228 n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 307 (485)
|.++..-+... .. ...|+.+++++|.+
T Consensus 218 n~i~~~~~l~~---~~--------------------------------------------------~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 218 NKISKLEGLNE---LV--------------------------------------------------MLHLRELYLSGNRI 244 (414)
T ss_pred ccceeccCccc---ch--------------------------------------------------hHHHHHHhcccCcc
Confidence 44431111000 00 00267778888887
Q ss_pred cccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCccc---Ccc-cccCCCCCCEEeccCCcccccC
Q 039564 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ---IPQ-QLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~-~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
. ..+..+..+..+..|++++|++... ..+...+.+..+....|.+... ... .....+.+..+.+.+|+.....
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 6 4445566778888888888887633 2345566777777777776532 111 1455677888888888776544
Q ss_pred C
Q 039564 384 P 384 (485)
Q Consensus 384 p 384 (485)
+
T Consensus 322 ~ 322 (414)
T KOG0531|consen 322 S 322 (414)
T ss_pred c
Confidence 3
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=8.4e-09 Score=109.26 Aligned_cols=131 Identities=25% Similarity=0.375 Sum_probs=92.9
Q ss_pred CCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCc--ccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccc
Q 039564 64 FPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNN--LTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTF 140 (485)
Q Consensus 64 ~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~ 140 (485)
...... +.+.+-+|.+....-.. .+.|++|-+..|. +.......|..++.|++|||++|.-.+.+|+.++.+
T Consensus 520 ~~~~~~-rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L---- 594 (889)
T KOG4658|consen 520 KSWNSV-RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL---- 594 (889)
T ss_pred cchhhe-eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh----
Confidence 333344 66777777665433322 5578888877775 443334457778888888888876666788777664
Q ss_pred cCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccc
Q 039564 141 MNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203 (485)
Q Consensus 141 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 203 (485)
-+|+.|++++..+. .+|..+.++..|.+|++..+.-....|.....+++|++|.+..-.
T Consensus 595 ---i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 ---VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ---hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 68888888888888 788888888888888888776555566666678888888876554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=9e-10 Score=108.95 Aligned_cols=196 Identities=24% Similarity=0.221 Sum_probs=117.1
Q ss_pred CCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCc
Q 039564 14 QQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTR 92 (485)
Q Consensus 14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~ 92 (485)
.+..++.+++..|.+. .+-..+. .+++|..|++.+|.|..+... ...+..|++|++++|.|+...+-. +..|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~--~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLS--KLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccc--cccceeeeeccccchhhcccc---hhhhhcchheeccccccccccchhhccchh
Confidence 3455666667777766 3333355 567777777777777765431 233334477777777777655544 66677
Q ss_pred EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564 93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI 172 (485)
Q Consensus 93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 172 (485)
.|++++|.+... ..+..++.|+.+++++|++...-+ . . ...+.+++.+++.+|.+. ....+..+..+..
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~-----~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~ 212 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-D-----E-LSELISLEELDLGGNSIR--EIEGLDLLKKLVL 212 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-h-----h-hhhccchHHHhccCCchh--cccchHHHHHHHH
Confidence 777777777632 334457777777777777763222 1 0 123467777777777775 2233444555555
Q ss_pred EEccCCcccCCcChhhhCCC--CCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564 173 IDLGNNQIIDTFPAWLGTLS--ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 173 L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
+++..|.++..-+ +..+. .|+.+++++|.+. .++..+ ..+..+..+++.+|.+.
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~--~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGL--ENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccc-cccccc--cccccccccchhhcccc
Confidence 5777776654432 12222 3777777777776 322223 45567777777777665
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1.8e-08 Score=106.75 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=53.2
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCc--CcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCC
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS--LTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTK 90 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~ 90 (485)
...+...+-+|.+. .++.... ++.|++|-+..|. +..+.. .+|..+++|++|||++|.=.+.+|.. +-+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~---~~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSE---NPKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchh-hccCCCC---CCccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 45556666666555 4444432 4456666666664 332222 35565666666666665443344433 445
Q ss_pred CcEEEccCCcccccCChhhcCCCCCCEEEcccCc
Q 039564 91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNN 124 (485)
Q Consensus 91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 124 (485)
|++|++++..+. .+|..+++++.|.+|++..+.
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence 555555555554 455555555555555555443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=1.4e-08 Score=90.21 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=50.1
Q ss_pred CCCCcEEEccCCcccc--cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC-Cccc
Q 039564 88 PTKTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI-PKSL 164 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~ 164 (485)
.+.++++||.+|.|+. .+-....++|.|++|+++.|++...|-. ++ ....+|++|-|.+..+.-.- ...+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~----lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS----LP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc----Cc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 4555556666665541 2333456788888888888877633321 10 12367788877777765332 2334
Q ss_pred cCCCCCcEEEccCCc
Q 039564 165 ANCAVLEIIDLGNNQ 179 (485)
Q Consensus 165 ~~l~~L~~L~Ls~n~ 179 (485)
..++.++.|.++.|.
T Consensus 143 ~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNS 157 (418)
T ss_pred hcchhhhhhhhccch
Confidence 566777777777763
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=3.6e-09 Score=104.61 Aligned_cols=105 Identities=26% Similarity=0.280 Sum_probs=66.6
Q ss_pred cccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCcc-ccCCCCCCEEECCCCcCcccCcccccCCCCCCEE
Q 039564 294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC-FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF 372 (485)
Q Consensus 294 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 372 (485)
++.++.|+|++|+++. ...+..+++|++|||+.|.+. .+|.. ..++ +|+.|++++|.++.. ..+.++++|+.|
T Consensus 186 l~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 4457778888887762 226677788888888888777 44442 2333 388888888877732 236777888888
Q ss_pred eccCCcccccCCCC--CCCCCCCCCCCCCCCCCC
Q 039564 373 NVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGLC 404 (485)
Q Consensus 373 ~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc 404 (485)
|+++|-+.+.-.-. ..+..+..+.+.|||.-|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 88888776532111 122334456677887655
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.2e-09 Score=104.91 Aligned_cols=128 Identities=26% Similarity=0.245 Sum_probs=94.0
Q ss_pred CCCCCccEEEcCCCcccccCCCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccC
Q 039564 65 PWSSGEFTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMN 142 (485)
Q Consensus 65 ~~~~lL~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~ 142 (485)
.+..+ .+.+.++|.+....... ++.++.|+|++|+++.. +.+..+++|+.|||++|.+. .+|. ++. .+
T Consensus 162 ~Wn~L-~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~-----~g 231 (1096)
T KOG1859|consen 162 VWNKL-ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-LSM-----VG 231 (1096)
T ss_pred hhhhH-hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-cch-----hh
Confidence 34444 66777777766332222 78899999999999843 37788999999999999998 6663 211 11
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccc
Q 039564 143 GSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 143 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 205 (485)
..|+.|.+++|.++.. ..+.++.+|+.||+++|-+.+..- ..+..+..|+.|+|.||.+.
T Consensus 232 -c~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 232 -CKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -hhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3499999999998732 467889999999999998865422 23556788999999999875
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.7e-08 Score=89.72 Aligned_cols=179 Identities=22% Similarity=0.219 Sum_probs=95.7
Q ss_pred CCcEEEccCCcccCC-cChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc-CCccCChhhhcccccce
Q 039564 169 VLEIIDLGNNQIIDT-FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS-FTGNLPSKYFQCWNAMK 246 (485)
Q Consensus 169 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 246 (485)
.|++|||++..|+.. +...+..+.+|+.|.+.++.+.+.+...+ ..-.+|+.|+++.++ ++..--.-.+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 466666666555421 22334455666666666666655554444 344566666666532 33222223344455555
Q ss_pred eccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCc--C-cccCchhhccCCCCCE
Q 039564 247 FVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG--F-HGEIPTSIANLKGLQV 323 (485)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l-~~~~p~~~~~l~~L~~ 323 (485)
.++++-+..... .......+..+.++.|++++.. + ...+..-...+++|.+
T Consensus 264 ~LNlsWc~l~~~--------------------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 264 ELNLSWCFLFTE--------------------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred hcCchHhhccch--------------------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 444332111100 0011112234457777777643 1 1123333456888999
Q ss_pred EeCcCce-ecccCCccccCCCCCCEEECCCCcCcccCcc---cccCCCCCCEEeccCC
Q 039564 324 LSLANNN-LEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ---QLTGLTFLEFFNVSHN 377 (485)
Q Consensus 324 L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N 377 (485)
||||+|. ++...-.+|..++.|++|.++.|... +|. .+...|+|.+|++.++
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 9998874 33333345667888899888888643 343 3566788888888765
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=7e-08 Score=84.81 Aligned_cols=243 Identities=18% Similarity=0.170 Sum_probs=135.9
Q ss_pred CCCCcEEEccCCcccccCChh----hcCCCCCCEEEcccCcc---cccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 88 PTKTRHYLVSKNNLTGEIPSW----ICNLSSLYILDLSDNNL---SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
+..+.+++|++|-|......+ +.+-.+|++.+++.-.. ...+|+.+.-+..++.+++.|++.+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 566777777777776543333 44556777777776422 22344444444456667788888888888887655
Q ss_pred Ccc----ccCCCCCcEEEccCCcccCCcChhhh-------------CCCCCCEEEeeccccccccCCcccc---CCCCCc
Q 039564 161 PKS----LANCAVLEIIDLGNNQIIDTFPAWLG-------------TLSELDILVLQSNNFHGEIKEHKME---CGFPKL 220 (485)
Q Consensus 161 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------~l~~L~~L~L~~n~l~~~~~~~~~~---~~l~~L 220 (485)
|.. ++.-+.|++|.+++|.+.-.-...++ .-|.|+......|++..- +..... ..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-s~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-SKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-cHHHHHHHHHhhcCc
Confidence 543 34567788888888866322111121 235666666666665421 111100 112356
Q ss_pred cEEEccCccCCccCChh-hhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564 221 RIVDLSNNSFTGNLPSK-YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299 (485)
Q Consensus 221 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 299 (485)
+.+.+.+|.|...--.. .+-.+ ....+|+.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl-------------------------------------------------~y~~~Lev 218 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGL-------------------------------------------------FYSHSLEV 218 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHH-------------------------------------------------HHhCccee
Confidence 66666666655210000 00000 01334778
Q ss_pred EEcCCCcCccc----CchhhccCCCCCEEeCcCceecccCCccc------cCCCCCCEEECCCCcCcccCc-ccc-----
Q 039564 300 VILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCF------GDLTKLESLDLSNNWFSGQIP-QQL----- 363 (485)
Q Consensus 300 L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~N~l~~~~p-~~~----- 363 (485)
|||..|-++-. +...+...+.|+.|.+..|-++..-...+ ...++|..|-..+|.+.+.+- ..+
T Consensus 219 LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e 298 (388)
T COG5238 219 LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE 298 (388)
T ss_pred eeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence 88888877632 22334455668888888887764333222 135677888888887654321 211
Q ss_pred -cCCCCCCEEeccCCccc
Q 039564 364 -TGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 364 -~~l~~L~~L~l~~N~l~ 380 (485)
..+|-|..+.+.+|++.
T Consensus 299 ~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 299 QDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hcccHHHHHHHHccCcch
Confidence 34666777777777775
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=3e-07 Score=80.92 Aligned_cols=216 Identities=21% Similarity=0.177 Sum_probs=136.9
Q ss_pred hhCCCCCCEEECCCCcCCCCCCccccc--CCCCCCcEEEccCCcCcCcCCC----------CCCCCCCCCccEEEcCCCc
Q 039564 12 LKQQKHLKALDLSSNKLHGNIPKWLLN--PSMQNFSYLNLSKNSLTGFDQH----------PSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~--~~l~~L~~L~Ls~n~l~~~~~~----------~~~~~~~~lL~~L~l~~n~ 79 (485)
+..+..+..+|||+|.|......+++. ..-++|+..+++.-. +|...+ +.+.+++.+ +..+||.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l-~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRL-QKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcc-eeeeccccc
Confidence 345788899999999998665555441 033667777777543 221110 113344444 999999998
Q ss_pred ccccCCCC-------CCCCcEEEccCCcccccCChh-------------hcCCCCCCEEEcccCcccccCCCccccCccc
Q 039564 80 LQGPIPAP-------PTKTRHYLVSKNNLTGEIPSW-------------ICNLSSLYILDLSDNNLSGELPRCLGNFSDT 139 (485)
Q Consensus 80 l~~~~~~~-------~~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~ 139 (485)
+....|.. -+.|.+|.+.+|.+....-.. ..+-|.|++.....|++. ..|..... ..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a--~~ 180 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSA--AL 180 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHH--HH
Confidence 88666553 678999999999775322211 234578899999999887 55543322 23
Q ss_pred ccCCCCccEEEccCCccccc-----CCccccCCCCCcEEEccCCcccCCc----ChhhhCCCCCCEEEeeccccccccCC
Q 039564 140 FMNGSNLGIIDMSHNLLQGR-----IPKSLANCAVLEIIDLGNNQIIDTF----PAWLGTLSELDILVLQSNNFHGEIKE 210 (485)
Q Consensus 140 ~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~ 210 (485)
+..-..|+++.+..|.|... +-..+..+.+|+.||+.+|.++..- ..++...+.|+.|.+..|-++..-..
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 33346788888888887632 1123456788999999998876432 23445667788888888876633222
Q ss_pred c----cccCCCCCccEEEccCccCCc
Q 039564 211 H----KMECGFPKLRIVDLSNNSFTG 232 (485)
Q Consensus 211 ~----~~~~~l~~L~~L~l~~n~l~~ 232 (485)
. +.....|+|..|-..+|...+
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcC
Confidence 1 111245777777777776654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=2.3e-06 Score=54.52 Aligned_cols=40 Identities=38% Similarity=0.628 Sum_probs=32.6
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcC
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFD 58 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~ 58 (485)
++|++|++++|+|+ .+|..++ .|++|++|++++|.|+.+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~--~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELS--NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGT--TCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHh--CCCCCCEEEecCCCCCCCc
Confidence 57899999999999 6777788 8999999999999988653
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.1e-06 Score=78.37 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=40.8
Q ss_pred CCccEEEccCCcccccC-CccccCCCCCcEEEccCCcccCCc-ChhhhCCCCCCEEEeeccccccccCC----ccccCCC
Q 039564 144 SNLGIIDMSHNLLQGRI-PKSLANCAVLEIIDLGNNQIIDTF-PAWLGTLSELDILVLQSNNFHGEIKE----HKMECGF 217 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~l 217 (485)
+++..+-+..|.+.... ...+...+.+..|+|+.|.|.... .+++.+++.|..|.+.++.+...+.. ....+++
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 44555555555444221 223444555556666666664332 23455666666666666665533221 1222455
Q ss_pred CCccEEE
Q 039564 218 PKLRIVD 224 (485)
Q Consensus 218 ~~L~~L~ 224 (485)
++++.|+
T Consensus 279 ~~v~vLN 285 (418)
T KOG2982|consen 279 TKVQVLN 285 (418)
T ss_pred cceEEec
Confidence 5555554
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.3e-07 Score=84.27 Aligned_cols=59 Identities=22% Similarity=0.109 Sum_probs=45.0
Q ss_pred cccccEEEcCCCc-CcccCchhhccCCCCCEEeCcCceecccCCcc---ccCCCCCCEEECCCCc
Q 039564 294 PYILTAVILSSNG-FHGEIPTSIANLKGLQVLSLANNNLEGHIPSC---FGDLTKLESLDLSNNW 354 (485)
Q Consensus 294 ~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~ 354 (485)
.+++..|||++|. ++...-..|.+++.|++|.++.|.. ++|.. +...++|.+||+-++-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 5679999999876 4433445577899999999999974 45553 5788999999987763
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=2.3e-07 Score=73.16 Aligned_cols=81 Identities=28% Similarity=0.461 Sum_probs=44.0
Q ss_pred ccEEEcCCCcCcccCchhhcc-CCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564 297 LTAVILSSNGFHGEIPTSIAN-LKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 375 (485)
|+..+|++|.+. ..|..|.. .+.+++|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444555555554 33333332 345556666666665 55555666666666666666665 444445445555556665
Q ss_pred CCccc
Q 039564 376 HNNLT 380 (485)
Q Consensus 376 ~N~l~ 380 (485)
+|..-
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=1.2e-05 Score=68.09 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=5.9
Q ss_pred CCCCCEEEcccCcc
Q 039564 112 LSSLYILDLSDNNL 125 (485)
Q Consensus 112 l~~L~~L~L~~n~l 125 (485)
+++|+.|.|.+|.+
T Consensus 87 ~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 87 LPNLKTLILTNNSI 100 (233)
T ss_pred ccccceEEecCcch
Confidence 33444444444443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=5e-06 Score=52.94 Aligned_cols=35 Identities=43% Similarity=0.661 Sum_probs=14.4
Q ss_pred CCEEeCcCceecccCCccccCCCCCCEEECCCCcCc
Q 039564 321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356 (485)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 356 (485)
|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444444
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=8.1e-07 Score=70.12 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=59.7
Q ss_pred ccEEEcCCCcCcccCchh---hccCCCCCEEeCcCceecccCCccccC-CCCCCEEECCCCcCcccCcccccCCCCCCEE
Q 039564 297 LTAVILSSNGFHGEIPTS---IANLKGLQVLSLANNNLEGHIPSCFGD-LTKLESLDLSNNWFSGQIPQQLTGLTFLEFF 372 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 372 (485)
+..++|+.+.+. .+++. +....+|...+|++|.+. ..|..|.. .+.++.|++++|+|+ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 556777777665 34333 334556667788888887 55555544 457888888888888 777778888888888
Q ss_pred eccCCccccc
Q 039564 373 NVSHNNLTGP 382 (485)
Q Consensus 373 ~l~~N~l~~~ 382 (485)
+++.|++...
T Consensus 106 Nl~~N~l~~~ 115 (177)
T KOG4579|consen 106 NLRFNPLNAE 115 (177)
T ss_pred ccccCccccc
Confidence 8888888743
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=6.7e-05 Score=71.96 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=33.8
Q ss_pred hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCC
Q 039564 109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN 178 (485)
Q Consensus 109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 178 (485)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.-...+|+.+. ++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----L------P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----L------PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----C------CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 445677778888877666 5552 1 14577777776443334554432 45666666666
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=3e-05 Score=65.71 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEE
Q 039564 18 LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHY 94 (485)
Q Consensus 18 L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L 94 (485)
=+.++|.+.++. .+-. ++. .......+||++|.+... ..+..+..|.+|.+++|.|+.+.|.. +++|..|
T Consensus 21 e~e~~LR~lkip-~ien-lg~-~~d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGA-TLDQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred cccccccccccc-chhh-ccc-cccccceecccccchhhc----ccCCCccccceEEecCCcceeeccchhhhccccceE
Confidence 455677766654 2221 331 346788899999988765 23455555599999999998877765 7889999
Q ss_pred EccCCcccccC-ChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564 95 LVSKNNLTGEI-PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 95 ~l~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~ 157 (485)
.+.+|++.... -.-+..++.|++|.+-+|.++ .-+.. .+ ..+..+++|++||++.-.-.
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~Y--R~-yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNY--RL-YVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchh-cccCc--ee-EEEEecCcceEeehhhhhHH
Confidence 99999887321 123567889999999999877 22210 00 34556799999999876544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00011 Score=70.56 Aligned_cols=135 Identities=15% Similarity=0.222 Sum_probs=88.6
Q ss_pred hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCC-cCcCcCCCCCCCCCCCCccEEEcCCC-cccccCCCCCC
Q 039564 12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN-SLTGFDQHPSVFPWSSGEFTLDLSSN-FLQGPIPAPPT 89 (485)
Q Consensus 12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~lL~~L~l~~n-~l~~~~~~~~~ 89 (485)
+..+.+++.|++++|.+. .+| .+ -.+|+.|.++++ .++. .|. . +...|+.|++++| .+. ..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L----P~sLtsL~Lsnc~nLts-LP~--~--LP~nLe~L~Ls~Cs~L~----sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL----PNELTEITIENCNNLTT-LPG--S--IPEGLEKLTVCHCPEIS----GLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC----CCCCcEEEccCCCCccc-CCc--h--hhhhhhheEccCccccc----cccc
Confidence 445899999999999888 667 23 257999999985 4443 332 2 2445699999998 443 3356
Q ss_pred CCcEEEccCCcccc--cCChhhcCCCCCCEEEcccCccc--ccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564 90 KTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSDNNLS--GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165 (485)
Q Consensus 90 ~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 165 (485)
.|+.|++..+.... .+|. +|+.|.+.+++.. ..+|.. + -++|++|++++|... ..|..+.
T Consensus 113 sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~---L------PsSLk~L~Is~c~~i-~LP~~LP 176 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL---I------SPSLKTLSLTGCSNI-ILPEKLP 176 (426)
T ss_pred ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc---c------CCcccEEEecCCCcc-cCccccc
Confidence 78888887765531 2333 4667776543211 011211 1 168999999999876 4555444
Q ss_pred CCCCCcEEEccCCc
Q 039564 166 NCAVLEIIDLGNNQ 179 (485)
Q Consensus 166 ~l~~L~~L~Ls~n~ 179 (485)
.+|++|+++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 589999998763
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=1.8e-05 Score=82.16 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCCCCCccEEEcCCCccccc----CCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCccc
Q 039564 64 FPWSSGEFTLDLSSNFLQGP----IPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDT 139 (485)
Q Consensus 64 ~~~~~lL~~L~l~~n~l~~~----~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~ 139 (485)
...++.|+.|.+++-.+... .-..+++|..||+++.+++.. ..++.+++|++|.+.+=.+.. -. .+ ..
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~-~~-~l----~~ 215 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES-YQ-DL----ID 215 (699)
T ss_pred hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc-hh-hH----HH
Confidence 33344445555555433221 112255666666666655532 445556666666555443331 00 00 11
Q ss_pred ccCCCCccEEEccCCcccccC------CccccCCCCCcEEEccCCcccC
Q 039564 140 FMNGSNLGIIDMSHNLLQGRI------PKSLANCAVLEIIDLGNNQIID 182 (485)
Q Consensus 140 ~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~ 182 (485)
+..+++|+.||+|........ -+.-..+|.|+.||.|++.+..
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 223466666666654443211 0111246667777777665543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00018 Score=74.93 Aligned_cols=77 Identities=22% Similarity=0.462 Sum_probs=44.6
Q ss_pred CCCcEEEccCCcccCC-cChhhh-CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccc
Q 039564 168 AVLEIIDLGNNQIIDT-FPAWLG-TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM 245 (485)
Q Consensus 168 ~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 245 (485)
.+|++||+++...... -|..++ -+|+|+.|.+.+-.+...--.. ....+|+|..||+|+.+++ .+ ...+.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNIS-NL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCcc-Cc--HHHhccccH
Confidence 5688888888544211 112222 5788888888886664221111 1156788888888888876 33 224444444
Q ss_pred eec
Q 039564 246 KFV 248 (485)
Q Consensus 246 ~~l 248 (485)
+.|
T Consensus 198 q~L 200 (699)
T KOG3665|consen 198 QVL 200 (699)
T ss_pred HHH
Confidence 443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.0016 Score=52.91 Aligned_cols=123 Identities=19% Similarity=0.316 Sum_probs=51.8
Q ss_pred hhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh
Q 039564 107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186 (485)
Q Consensus 107 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 186 (485)
.+|.++.+|+.+.+.. .+. .++. ..|..+.+|+.+.+.++ +.......|.++++++.+.+.+ .+......
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGE------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-T------TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred HHHhCCCCCCEEEECC-Cee-EeCh------hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc
Confidence 4566666677766653 343 3332 44555566777777664 5434445566666677777754 33333445
Q ss_pred hhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccc
Q 039564 187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM 245 (485)
Q Consensus 187 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 245 (485)
.|..+++|+.+.+..+ +. .++...+ ... +++.+.+.. .+. .++...|.++.+|
T Consensus 76 ~F~~~~~l~~i~~~~~-~~-~i~~~~f-~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-IT-EIGSSSF-SNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TTECEEEETTT--B-EEHTTTT-TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccccccccCcc-cc-EEchhhh-cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 5666777777777554 33 2222221 344 666676654 333 4455555555443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=2.9e-05 Score=68.94 Aligned_cols=85 Identities=26% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCcccccC-ChhhcCCCCCCEEE
Q 039564 42 QNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEI-PSWICNLSSLYILD 119 (485)
Q Consensus 42 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ 119 (485)
.+.+.|++.++.++.+ ++..-++.|++|.|+-|+|+...|-. +++|++|+|..|.|.+.. -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455566666665543 34444444466666666665444433 666666666666665321 12345667777777
Q ss_pred cccCcccccCC
Q 039564 120 LSDNNLSGELP 130 (485)
Q Consensus 120 L~~n~l~~~~p 130 (485)
|..|.-.|..+
T Consensus 95 L~ENPCc~~ag 105 (388)
T KOG2123|consen 95 LDENPCCGEAG 105 (388)
T ss_pred hccCCcccccc
Confidence 77766554443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.77 E-value=0.0045 Score=50.18 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=49.5
Q ss_pred CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564 88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 167 (485)
+.+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++. .+|..+++++.+.+.+ .+.......|..+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~------~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGD------NAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-T------TTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccce------eeeecccccccccccc-ccccccccccccc
Confidence 33455555543 344344556777777777777664 44 3332 4455666777777765 4433444566667
Q ss_pred CCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS 201 (485)
Q Consensus 168 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 201 (485)
++|+.+++..+ +.......|... +|+.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77777777654 444555566665 777777654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0011 Score=58.94 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=27.1
Q ss_pred CCccEEEccCCcccccCCcc---ccCCCCCcEEEccCCcccCCcC---hhhhCCCCCCEEEee
Q 039564 144 SNLGIIDMSHNLLQGRIPKS---LANCAVLEIIDLGNNQIIDTFP---AWLGTLSELDILVLQ 200 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~ 200 (485)
++|++|++++|+|.. +++ +..+.+|..|++.+|..+...- ..|.-+++|++|+-.
T Consensus 91 P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred CceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 555555555555542 222 2344455566666655443211 234456666666543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=7.3e-05 Score=66.47 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=53.4
Q ss_pred CCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhC
Q 039564 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGT 190 (485)
Q Consensus 112 l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 190 (485)
+.+.+.|+.-++.+.+. .....++.|++|.|+-|+|+.. ..|..+++|++|+|..|.|....- ..+.+
T Consensus 18 l~~vkKLNcwg~~L~DI---------sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---------SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHH---------HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 34455566666665521 1223456666666666666522 235566666666666666643321 23445
Q ss_pred CCCCCEEEeeccccccccCCcc---ccCCCCCccEEE
Q 039564 191 LSELDILVLQSNNFHGEIKEHK---MECGFPKLRIVD 224 (485)
Q Consensus 191 l~~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~ 224 (485)
+++|+.|.|..|.-.+.-+... ....+|+|+.||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666666666554443321 002355555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0021 Score=57.07 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCCccEEEccCC--cccccCCccccCCCCCcEEEccCCccc
Q 039564 143 GSNLGIIDMSHN--LLQGRIPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 143 l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
+++|++|.++.| ++.+.++.....+++|++|++++|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 456666666666 444444444444466666666666553
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0048 Score=32.54 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=5.2
Q ss_pred CCEEeCcCceec
Q 039564 321 LQVLSLANNNLE 332 (485)
Q Consensus 321 L~~L~Ls~N~l~ 332 (485)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0047 Score=32.59 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=14.6
Q ss_pred CCCEEECCCCcCcccCcccccC
Q 039564 344 KLESLDLSNNWFSGQIPQQLTG 365 (485)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~~~~~ 365 (485)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677888888777 66665554
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.44 E-value=0.00049 Score=64.87 Aligned_cols=62 Identities=27% Similarity=0.201 Sum_probs=33.1
Q ss_pred cCCCCCEEeCcCceecccC-----CccccCCCCCCEEECCCCcCc-ccCcccccCCCCCCEEeccCCc
Q 039564 317 NLKGLQVLSLANNNLEGHI-----PSCFGDLTKLESLDLSNNWFS-GQIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 317 ~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~ 378 (485)
+++.|+.|.|+++...... ...-..+..|+.+.|+++..+ ...-..+..++.|+.+++-+++
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4566777777766432111 111234556677777777443 2233445556666666665554
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.29 E-value=0.00049 Score=64.84 Aligned_cols=78 Identities=24% Similarity=0.211 Sum_probs=44.3
Q ss_pred cccccEEEcCCCcCc-cc----CchhhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCCcCccc--CcccccC
Q 039564 294 PYILTAVILSSNGFH-GE----IPTSIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQ--IPQQLTG 365 (485)
Q Consensus 294 ~~~L~~L~Ls~n~l~-~~----~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~ 365 (485)
.+.++.+.++++... ++ ....-..+..|+.+.|+++... ...-..+...++|+.+++-.++-... +...-.+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 344666666665532 11 1122235677888888888653 23334566778888888888854322 2222345
Q ss_pred CCCCCE
Q 039564 366 LTFLEF 371 (485)
Q Consensus 366 l~~L~~ 371 (485)
+|++++
T Consensus 451 lp~i~v 456 (483)
T KOG4341|consen 451 LPNIKV 456 (483)
T ss_pred Ccccee
Confidence 665554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.46 E-value=0.044 Score=26.73 Aligned_cols=13 Identities=54% Similarity=0.692 Sum_probs=5.3
Q ss_pred CCcEEEccCCcCc
Q 039564 43 NFSYLNLSKNSLT 55 (485)
Q Consensus 43 ~L~~L~Ls~n~l~ 55 (485)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.95 E-value=0.00057 Score=68.14 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=39.3
Q ss_pred CcEEEccCCcccccCC----hhhcCCCCCCEEEcccCcccccCCCccccCcccccCC-CCccEEEccCCccccc----CC
Q 039564 91 TRHYLVSKNNLTGEIP----SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNG-SNLGIIDMSHNLLQGR----IP 161 (485)
Q Consensus 91 L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l-~~L~~L~Ls~n~i~~~----~~ 161 (485)
+..|.+.+|.+..... ..+...+.|+.|++++|.+.+. ....+...+... ..+++|++..|.++.. +.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~---g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE---GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH---hHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 4555555555543222 2334455566666666655421 111111222222 3455555555555432 22
Q ss_pred ccccCCCCCcEEEccCCcc
Q 039564 162 KSLANCAVLEIIDLGNNQI 180 (485)
Q Consensus 162 ~~~~~l~~L~~L~Ls~n~l 180 (485)
+.+.....++.++++.|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHhcccchhHHHHHhccc
Confidence 3333445555555555554
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.13 E-value=0.0062 Score=53.11 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=69.8
Q ss_pred ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEec
Q 039564 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374 (485)
Q Consensus 295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 374 (485)
...+.||++.|++. .....|.-++.+..||++.|++. ..|..++++..+..+++..|..+ ..|.++...+.++.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 44788999998876 44555666788889999999988 78888999899999999999888 78889999999999999
Q ss_pred cCCccc
Q 039564 375 SHNNLT 380 (485)
Q Consensus 375 ~~N~l~ 380 (485)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 998875
No 74
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=90.92 E-value=0.78 Score=44.68 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=8.6
Q ss_pred ccEEEccCccCCccC
Q 039564 220 LRIVDLSNNSFTGNL 234 (485)
Q Consensus 220 L~~L~l~~n~l~~~~ 234 (485)
++++.+..|.+.+..
T Consensus 356 ~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEG 370 (553)
T ss_pred eeEeecccccccccc
Confidence 566666666655433
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.90 E-value=0.21 Score=27.37 Aligned_cols=14 Identities=57% Similarity=0.703 Sum_probs=8.0
Q ss_pred CCCCEEECCCCcCc
Q 039564 343 TKLESLDLSNNWFS 356 (485)
Q Consensus 343 ~~L~~L~Ls~N~l~ 356 (485)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.90 E-value=0.21 Score=27.37 Aligned_cols=14 Identities=57% Similarity=0.703 Sum_probs=8.0
Q ss_pred CCCCEEECCCCcCc
Q 039564 343 TKLESLDLSNNWFS 356 (485)
Q Consensus 343 ~~L~~L~Ls~N~l~ 356 (485)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.34 E-value=0.24 Score=27.10 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=6.9
Q ss_pred CCcEEEccCCcccCC
Q 039564 169 VLEIIDLGNNQIIDT 183 (485)
Q Consensus 169 ~L~~L~Ls~n~l~~~ 183 (485)
+|++|+|++|.+...
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444433
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.34 E-value=0.24 Score=27.10 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=6.9
Q ss_pred CCcEEEccCCcccCC
Q 039564 169 VLEIIDLGNNQIIDT 183 (485)
Q Consensus 169 ~L~~L~Ls~n~l~~~ 183 (485)
+|++|+|++|.+...
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444433
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.78 E-value=0.0023 Score=63.89 Aligned_cols=82 Identities=26% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCEEECCCCcCCCCCCc----ccccCCCCCCcEEEccCCcCcCcCCC--CCCCCC-CCCccEEEcCCCcccccCCCC---
Q 039564 18 LKALDLSSNKLHGNIPK----WLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPW-SSGEFTLDLSSNFLQGPIPAP--- 87 (485)
Q Consensus 18 L~~L~Ls~n~~~~~~p~----~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~-~~lL~~L~l~~n~l~~~~~~~--- 87 (485)
+..|.|.+|.+.+.... .+. ...+|+.|++++|.+....-. -..... ...+++|++..|.+++.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~--t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALK--TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhc--ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 77788888888755443 333 567888899998888731100 001112 133466777777776433221
Q ss_pred ----CCCCcEEEccCCcc
Q 039564 88 ----PTKTRHYLVSKNNL 101 (485)
Q Consensus 88 ----~~~L~~L~l~~n~l 101 (485)
...++.++++.|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 44455555555554
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.07 E-value=0.094 Score=53.15 Aligned_cols=113 Identities=26% Similarity=0.222 Sum_probs=55.8
Q ss_pred CCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC-cccccCC----ccccCCCCCcEEEccCCc-ccCCcC
Q 039564 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN-LLQGRIP----KSLANCAVLEIIDLGNNQ-IIDTFP 185 (485)
Q Consensus 112 l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~ 185 (485)
++.|+.|.+..+.-..... +. ......+.|++|+++++ ......+ .....+++|+.|+++++. +++..-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LD---ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhh--HH---HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 4566666666553211100 10 12234567777777663 1111111 123345677777777766 444433
Q ss_pred hhhhC-CCCCCEEEeeccc-cccccCCccccCCCCCccEEEccCccC
Q 039564 186 AWLGT-LSELDILVLQSNN-FHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 186 ~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
.++.. +++|++|.+.++. ++..--.. ....+++|++|+++.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence 33333 6677777766555 33211111 114566777777776553
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.65 E-value=0.19 Score=43.17 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=36.8
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc-CCccCChhhhcccccceec
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS-FTGNLPSKYFQCWNAMKFV 248 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l 248 (485)
++.+|-++..|...--..+..++.++.|.+.++.--+...-.......++|+.|++++|. |+ +-.-.++..+++|+.+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHHH
Confidence 444444444444333333444444444444444322221111111233556666666443 33 3333344455555555
Q ss_pred cccchhhhh
Q 039564 249 NASQLRYMR 257 (485)
Q Consensus 249 ~~~~~~~~~ 257 (485)
.+..+.++.
T Consensus 182 ~l~~l~~v~ 190 (221)
T KOG3864|consen 182 HLYDLPYVA 190 (221)
T ss_pred HhcCchhhh
Confidence 555444443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.51 E-value=0.16 Score=27.27 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=5.2
Q ss_pred CCCEEeCcCceec
Q 039564 320 GLQVLSLANNNLE 332 (485)
Q Consensus 320 ~L~~L~Ls~N~l~ 332 (485)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.21 E-value=0.16 Score=43.74 Aligned_cols=82 Identities=23% Similarity=0.153 Sum_probs=60.3
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceeccc--CCccccCCCCCCEEECCCC-cCcccCcccccCCCCCCEEe
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGH--IPSCFGDLTKLESLDLSNN-WFSGQIPQQLTGLTFLEFFN 373 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ 373 (485)
++.+|-++..|..+--+-+..++.++.|.+.++.-.+. +...-+..++|+.|++++| +|+...-.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 78888899888877777788888889998888853211 0000124578999999988 78877677888888888887
Q ss_pred ccCCc
Q 039564 374 VSHNN 378 (485)
Q Consensus 374 l~~N~ 378 (485)
+.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 76543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.12 E-value=1.5 Score=24.13 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=8.8
Q ss_pred CCCcEEEccCCcCcCc
Q 039564 42 QNFSYLNLSKNSLTGF 57 (485)
Q Consensus 42 ~~L~~L~Ls~n~l~~~ 57 (485)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3555566666655543
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.08 E-value=0.58 Score=47.34 Aligned_cols=115 Identities=20% Similarity=0.068 Sum_probs=73.3
Q ss_pred CCCCcEEEccCCccccc--CChhhcCCCCCCEEEcccC-cccccCCCccccCcccccCCCCccEEEccCCc-ccccCCcc
Q 039564 88 PTKTRHYLVSKNNLTGE--IPSWICNLSSLYILDLSDN-NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL-LQGRIPKS 163 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 163 (485)
.+.|+.|.+.++.-... .-.....++.|+.|+++++ ......+.... .....+++|+.|+++.+. +++..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL---LLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh---hhhhhcCCcCccchhhhhccCchhHHH
Confidence 57788888877744433 2345667899999999873 22112221111 122345889999999988 55443334
Q ss_pred cc-CCCCCcEEEccCCc-ccCCcCh-hhhCCCCCCEEEeeccccc
Q 039564 164 LA-NCAVLEIIDLGNNQ-IIDTFPA-WLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 164 ~~-~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~ 205 (485)
+. .+++|++|.+.++. +++..-. ....+++|++|+++++...
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 43 37899999988776 4433222 2346788999999988764
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.92 E-value=0.047 Score=47.84 Aligned_cols=89 Identities=24% Similarity=0.213 Sum_probs=68.2
Q ss_pred chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCC
Q 039564 312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPT 391 (485)
Q Consensus 312 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 391 (485)
...+......+.||++.|++. ..-..|+-++.|..||++.|++. ..|..+.+...+..+++..|..+...-...+.+.
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 345667788999999999887 45566788899999999999999 7888899888899999988887643333345555
Q ss_pred CCCCCCCCCCC
Q 039564 392 FDSSSFDGNSG 402 (485)
Q Consensus 392 l~~~~~~~n~~ 402 (485)
....+..++|+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 55666666653
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.37 E-value=1.7 Score=23.79 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=9.8
Q ss_pred CCCEEECCCCcCcccCcc
Q 039564 344 KLESLDLSNNWFSGQIPQ 361 (485)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~ 361 (485)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 4443
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=75.47 E-value=2 Score=51.27 Aligned_cols=36 Identities=25% Similarity=0.125 Sum_probs=28.0
Q ss_pred ECCCCcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 349 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 384 (485)
||++|+|+...+..|..+++|+.|+|++|+|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 578888886666778888888888888888876443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.97 E-value=2.9 Score=23.34 Aligned_cols=14 Identities=57% Similarity=0.745 Sum_probs=8.5
Q ss_pred CCCCEEECCCCcCC
Q 039564 16 KHLKALDLSSNKLH 29 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~ 29 (485)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666665
No 90
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=71.54 E-value=0.88 Score=35.95 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=7.4
Q ss_pred eeeeeeeeehhhHHHH
Q 039564 441 LIGYAGGVVAGLVLGF 456 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~~ 456 (485)
++++++|+++|++..+
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3444555555554333
No 91
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.07 E-value=1.5 Score=36.57 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=32.3
Q ss_pred ccceeeeeeeeeeeehhhHHHHHHhhccceeehhhhhhHHHhhhhh
Q 039564 435 FDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRRKN 480 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (485)
..|..+..++.+|.++..+++.+.++...+|.+.+++.++++++..
T Consensus 133 ~lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~~~~~ 178 (184)
T COG3216 133 SLWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRRSLAE 178 (184)
T ss_pred HhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777778887777777777777888888777665554433
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.04 E-value=2.7 Score=41.96 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC--ccccc--CCCC-CCCCcEEEccCCcccccCCh-------h
Q 039564 41 MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN--FLQGP--IPAP-PTKTRHYLVSKNNLTGEIPS-------W 108 (485)
Q Consensus 41 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n--~l~~~--~~~~-~~~L~~L~l~~n~l~~~~p~-------~ 108 (485)
.+.+..++|++|++..+....++..-.+.|.+|+|++| .+... ++.. ...|++|.+.+|.+...... .
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 44555555666655443322222222333356666666 22211 1111 45567777777766533211 1
Q ss_pred hcCCCCCCEEE
Q 039564 109 ICNLSSLYILD 119 (485)
Q Consensus 109 ~~~l~~L~~L~ 119 (485)
-.-+|+|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 12467777765
No 93
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=66.63 E-value=5.5 Score=32.60 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=11.8
Q ss_pred eeeeeeeeeeehhhHHHHHH
Q 039564 439 IVLIGYAGGVVAGLVLGFNF 458 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~ 458 (485)
-+++|+++|+.+.+++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~ 68 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILA 68 (154)
T ss_pred cEEEEEEecccHHHHHHHHH
Confidence 35677777766655554444
No 94
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=61.63 E-value=4.7 Score=34.99 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=14.3
Q ss_pred ceeeeeeeeeeeehhhHHHHHHhhc
Q 039564 437 WEIVLIGYAGGVVAGLVLGFNFSTG 461 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (485)
...+++|+++|++++++++++..++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3456667777766655555554433
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.02 E-value=4.7 Score=40.41 Aligned_cols=57 Identities=25% Similarity=0.142 Sum_probs=38.4
Q ss_pred cEEEcCCCcccccCC-----CCCCCCcEEEccCC--cccccCChhhc--CCCCCCEEEcccCcccccC
Q 039564 71 FTLDLSSNFLQGPIP-----APPTKTRHYLVSKN--NLTGEIPSWIC--NLSSLYILDLSDNNLSGEL 129 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n--~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~ 129 (485)
..++|++|++..... ...++|..|+|++| .+. ...++. +...|++|-+.+|.+....
T Consensus 221 ~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 221 LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred eeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 778899998764332 22788999999999 433 222333 3346788999999887544
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.27 E-value=26 Score=34.64 Aligned_cols=17 Identities=47% Similarity=0.630 Sum_probs=8.9
Q ss_pred CCEEEcccCcccccCCC
Q 039564 115 LYILDLSDNNLSGELPR 131 (485)
Q Consensus 115 L~~L~L~~n~l~~~~p~ 131 (485)
+++++++.|.....+|.
T Consensus 216 lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPR 232 (553)
T ss_pred ccccccccCCCCccchh
Confidence 44555555555544543
No 97
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=52.30 E-value=4.3 Score=28.04 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=12.1
Q ss_pred eeeeeeeeeeehhhHHHHHHhhccceeehhh
Q 039564 439 IVLIGYAGGVVAGLVLGFNFSTGIVGWFLEK 469 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
+..+|++++++++++.. ...|||++
T Consensus 33 W~aIGvi~gi~~~~lt~------ltN~YFK~ 57 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTY------LTNLYFKI 57 (68)
T ss_pred chhHHHHHHHHHHHHHH------HhHhhhhh
Confidence 34455555555444433 34466643
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=48.71 E-value=15 Score=27.74 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.7
Q ss_pred eeeeeeeee
Q 039564 441 LIGYAGGVV 449 (485)
Q Consensus 441 ~~~~~~~~~ 449 (485)
++|++++++
T Consensus 68 iagi~vg~~ 76 (96)
T PTZ00382 68 IAGISVAVV 76 (96)
T ss_pred EEEEEeehh
Confidence 344444433
No 99
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.29 E-value=5.8 Score=27.66 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=4.5
Q ss_pred eeehhhHHHHH
Q 039564 447 GVVAGLVLGFN 457 (485)
Q Consensus 447 ~~~~~~~~~~~ 457 (485)
++++|++++.+
T Consensus 27 ~f~~G~llg~l 37 (68)
T PF06305_consen 27 AFLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.57 E-value=16 Score=19.68 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=5.9
Q ss_pred CCCCEEECCCC
Q 039564 16 KHLKALDLSSN 26 (485)
Q Consensus 16 ~~L~~L~Ls~n 26 (485)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 101
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=42.29 E-value=8 Score=26.43 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=0.0
Q ss_pred eeeeeeeeehhhHHHHHH
Q 039564 441 LIGYAGGVVAGLVLGFNF 458 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~ 458 (485)
..|+++|.|+++++++++
T Consensus 11 laavIaG~Vvgll~ailL 28 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAILL 28 (64)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555444433
No 102
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.15 E-value=10 Score=31.04 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=13.2
Q ss_pred cceeeeeeeeeeeehhhHHHHHHh
Q 039564 436 DWEIVLIGYAGGVVAGLVLGFNFS 459 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~ 459 (485)
....+++|+++.++++++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeE
Confidence 345566666666655554444443
No 103
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.98 E-value=4.5 Score=24.31 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=8.8
Q ss_pred eeeeeeeehhhHHHHHH
Q 039564 442 IGYAGGVVAGLVLGFNF 458 (485)
Q Consensus 442 ~~~~~~~~~~~~~~~~~ 458 (485)
+++++++++++++.+++
T Consensus 6 IaIIv~V~vg~~iiii~ 22 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIIC 22 (38)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555555555544444
No 104
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=37.41 E-value=16 Score=35.94 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=5.3
Q ss_pred eeehhhHHHHHH
Q 039564 447 GVVAGLVLGFNF 458 (485)
Q Consensus 447 ~~~~~~~~~~~~ 458 (485)
++||+.+|+++.
T Consensus 377 vvvVgglvGfLc 388 (397)
T PF03302_consen 377 VVVVGGLVGFLC 388 (397)
T ss_pred HHHHHHHHHHHh
Confidence 334444444444
No 105
>PF15050 SCIMP: SCIMP protein
Probab=35.84 E-value=4.7 Score=31.12 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.5
Q ss_pred ceeehhhhhhHH
Q 039564 463 VGWFLEKLGMQQ 474 (485)
Q Consensus 463 ~~~~~~~~~~~~ 474 (485)
.+|.+|.-++|.
T Consensus 31 cR~~lRqGkkwe 42 (133)
T PF15050_consen 31 CRWQLRQGKKWE 42 (133)
T ss_pred HHHHHHccccce
Confidence 355555444433
No 106
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=35.73 E-value=27 Score=18.22 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=6.3
Q ss_pred eeehhhhhhHHHhhh
Q 039564 464 GWFLEKLGMQQKKRR 478 (485)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (485)
.|.-.+.++..++||
T Consensus 4 kwrkkrmrrlkrkrr 18 (26)
T KOG4752|consen 4 KWRKKRMRRLKRKRR 18 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 454444444333333
No 107
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=35.67 E-value=32 Score=31.63 Aligned_cols=9 Identities=56% Similarity=1.128 Sum_probs=3.6
Q ss_pred eeeeeeeee
Q 039564 441 LIGYAGGVV 449 (485)
Q Consensus 441 ~~~~~~~~~ 449 (485)
++|+++|++
T Consensus 216 v~g~~~G~~ 224 (278)
T PF06697_consen 216 VVGVVGGVV 224 (278)
T ss_pred EEEehHHHH
Confidence 334344443
No 108
>PF15179 Myc_target_1: Myc target protein 1
Probab=35.41 E-value=4.6 Score=33.89 Aligned_cols=31 Identities=23% Similarity=0.643 Sum_probs=15.7
Q ss_pred ceeeeeeeeeeeehhhHHHHHHhhccceeehh
Q 039564 437 WEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLE 468 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (485)
|.-+++++.+.+++|++++.+++ ....|.-|
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~-~LltwlSR 48 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIW-ALLTWLSR 48 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 44455555566666665555442 23344433
No 109
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.73 E-value=15 Score=30.17 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=6.9
Q ss_pred eeeeeehhhHHHHHH
Q 039564 444 YAGGVVAGLVLGFNF 458 (485)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (485)
+++|+++..++++++
T Consensus 11 ~~ag~a~~~flgYci 25 (148)
T TIGR00985 11 IAAGIAAAAFLGYAI 25 (148)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444445544
No 110
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.57 E-value=29 Score=23.28 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=5.8
Q ss_pred ehhhhhhHHHh
Q 039564 466 FLEKLGMQQKK 476 (485)
Q Consensus 466 ~~~~~~~~~~~ 476 (485)
|+++.++++.+
T Consensus 14 FL~RvGr~q~~ 24 (60)
T PF06072_consen 14 FLRRVGRQQHA 24 (60)
T ss_pred HHHHHhHHHHH
Confidence 34556666633
No 111
>PF05162 Ribosomal_L41: Ribosomal protein L41; InterPro: IPR007836 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L41 associates with the ribonucleoprotein particles of the 60S subunit late in the ribosomal maturation process. L41 is encoded by the smallest known open reading frame and in yeast is composed of only 24 amino acids, 17 of which are arginine or lysine.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_q 3IZR_q.
Probab=31.41 E-value=31 Score=18.25 Aligned_cols=12 Identities=8% Similarity=0.399 Sum_probs=4.7
Q ss_pred eeehhhhhhHHH
Q 039564 464 GWFLEKLGMQQK 475 (485)
Q Consensus 464 ~~~~~~~~~~~~ 475 (485)
.|.-.+.++.++
T Consensus 4 kw~kkR~rRlkr 15 (25)
T PF05162_consen 4 KWKKKRMRRLKR 15 (25)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444433333
No 112
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.00 E-value=44 Score=40.87 Aligned_cols=32 Identities=31% Similarity=0.253 Sum_probs=27.1
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999767778888999999999999875
No 113
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.24 E-value=24 Score=27.18 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=0.0
Q ss_pred ccceeehhh
Q 039564 461 GIVGWFLEK 469 (485)
Q Consensus 461 ~~~~~~~~~ 469 (485)
....||.++
T Consensus 41 liGCWYckR 49 (118)
T PF14991_consen 41 LIGCWYCKR 49 (118)
T ss_dssp ---------
T ss_pred HHhheeeee
Confidence 355677654
No 114
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.65 E-value=34 Score=29.89 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=4.9
Q ss_pred eeehhhHHHHHHh
Q 039564 447 GVVAGLVLGFNFS 459 (485)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (485)
+|++++++++++.
T Consensus 49 tVILVI~i~v~vR 61 (221)
T PF08374_consen 49 TVILVIFIVVLVR 61 (221)
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333334
No 115
>PF14770 TMEM18: Transmembrane protein 18
Probab=23.20 E-value=49 Score=26.35 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=23.5
Q ss_pred eeeeeeehhhHHHHHHhhccceeehhhhhhHHHhhh
Q 039564 443 GYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRR 478 (485)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (485)
|+.++++..+.+.+..+.....|..+......+-||
T Consensus 79 G~Fisvv~s~PlLl~~~ii~~~~l~~~~~lmv~~Kr 114 (123)
T PF14770_consen 79 GVFISVVFSAPLLLNCLIILVNWLYQLCSLMVQVKR 114 (123)
T ss_pred CeeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666777787777776655333
No 116
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.55 E-value=29 Score=27.56 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=0.0
Q ss_pred eeehhhHHHHHH
Q 039564 447 GVVAGLVLGFNF 458 (485)
Q Consensus 447 ~~~~~~~~~~~~ 458 (485)
|++++.++++++
T Consensus 4 g~a~~~~lgYci 15 (121)
T PF02064_consen 4 GVAAAAFLGYCI 15 (121)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 333334444444
No 117
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=22.39 E-value=35 Score=33.59 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=20.4
Q ss_pred eeeeeeeeeeehhhHHHHHHhhccceeehhhh
Q 039564 439 IVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKL 470 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
.+..|+++|+.|+++|++--++.-..|||..+
T Consensus 363 ~LstgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred cccccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 35567777777776666666666666766543
No 118
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=22.23 E-value=45 Score=21.29 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 039564 400 NSGLCGKPLF 409 (485)
Q Consensus 400 n~~lc~~~~~ 409 (485)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 7999998763
No 119
>PF14851 FAM176: FAM176 family
Probab=21.49 E-value=16 Score=30.16 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=10.7
Q ss_pred eeeeehhhHHHHHHhhcccee
Q 039564 445 AGGVVAGLVLGFNFSTGIVGW 465 (485)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~ 465 (485)
+.||-+|+++.+|++..+..+
T Consensus 27 v~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 27 VSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHhhhee
Confidence 344445555555555455555
No 120
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.26 E-value=54 Score=24.35 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=12.9
Q ss_pred cceeeeeeeeeeeehhhHHHHHHhhcccee
Q 039564 436 DWEIVLIGYAGGVVAGLVLGFNFSTGIVGW 465 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (485)
.|.+++ .++|+++.++++.++++.+.+|
T Consensus 41 yWpyLA--~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLA--AGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhh--ccchhhhHHHHHHHHHHhhhhh
Confidence 344443 3355555555444444444444
No 121
>PTZ00370 STEVOR; Provisional
Probab=20.18 E-value=32 Score=31.57 Aligned_cols=6 Identities=17% Similarity=0.611 Sum_probs=2.5
Q ss_pred ceeehh
Q 039564 463 VGWFLE 468 (485)
Q Consensus 463 ~~~~~~ 468 (485)
..|..|
T Consensus 275 Yiwlyr 280 (296)
T PTZ00370 275 YIWLYR 280 (296)
T ss_pred HHHHHH
Confidence 345443
Done!