Query 039564
Match_columns 485
No_of_seqs 342 out of 4059
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-49 7.4E-54 421.7 30.1 401 2-416 303-752 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 3E-44 1E-48 385.9 26.8 258 144-408 266-565 (844)
3 3rgz_A Protein brassinosteroid 100.0 1.6E-43 5.4E-48 376.6 26.2 382 2-404 256-718 (768)
4 4eco_A Uncharacterized protein 100.0 1.7E-41 6E-46 353.0 24.1 347 32-405 198-602 (636)
5 3t6q_A CD180 antigen; protein- 100.0 1.9E-40 6.5E-45 344.9 30.2 393 9-408 74-565 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-40 5.9E-45 345.2 28.7 389 1-409 40-564 (606)
7 3v47_A TOLL-like receptor 5B a 100.0 2.3E-39 8E-44 324.9 27.0 375 2-408 19-413 (455)
8 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-39 3.1E-43 336.7 32.8 133 276-408 482-627 (680)
9 4eco_A Uncharacterized protein 100.0 5.8E-40 2E-44 341.5 22.8 360 2-383 192-603 (636)
10 4ecn_A Leucine-rich repeat pro 100.0 2.8E-39 9.6E-44 342.2 26.6 347 32-404 440-841 (876)
11 2id5_A Lingo-1, leucine rich r 100.0 5.3E-39 1.8E-43 324.1 26.2 339 2-408 20-361 (477)
12 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-38 1.6E-42 328.6 31.3 394 1-408 60-585 (635)
13 2z63_A TOLL-like receptor 4, v 100.0 1.8E-38 6.1E-43 327.7 27.1 390 1-408 36-536 (570)
14 3t6q_A CD180 antigen; protein- 100.0 6.4E-38 2.2E-42 325.8 30.5 130 1-134 41-174 (606)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-38 5.2E-43 326.7 24.2 385 2-407 14-514 (549)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-37 4.1E-42 320.5 29.4 359 1-408 39-515 (562)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-38 1.4E-42 321.2 25.7 357 1-408 8-486 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 1.8E-38 6.2E-43 336.0 21.9 362 2-384 434-844 (876)
19 3v47_A TOLL-like receptor 5B a 100.0 2.7E-37 9.2E-42 309.9 25.3 348 1-386 38-414 (455)
20 3j0a_A TOLL-like receptor 5; m 100.0 6.2E-37 2.1E-41 329.1 29.6 394 1-402 32-538 (844)
21 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-37 8.8E-42 321.3 25.3 378 1-402 19-533 (606)
22 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-36 1.3E-40 316.5 33.2 396 2-402 34-548 (680)
23 2id5_A Lingo-1, leucine rich r 100.0 1.1E-36 3.7E-41 307.3 27.6 322 18-408 13-338 (477)
24 2z81_A CD282 antigen, TOLL-lik 100.0 4E-36 1.4E-40 308.6 23.3 364 1-384 34-514 (549)
25 2z63_A TOLL-like receptor 4, v 100.0 1.9E-35 6.6E-40 305.0 26.9 370 1-386 60-537 (570)
26 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-36 3.2E-40 303.7 23.8 338 1-384 29-485 (520)
27 1ogq_A PGIP-2, polygalacturona 100.0 6.8E-36 2.3E-40 283.9 20.2 259 89-412 50-312 (313)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-35 9.4E-40 302.9 25.6 338 1-384 60-514 (562)
29 1jl5_A Outer protein YOPM; leu 100.0 8.7E-35 3E-39 289.8 21.2 319 1-381 19-371 (454)
30 3o6n_A APL1; leucine-rich repe 100.0 5.7E-34 1.9E-38 279.7 24.0 309 14-406 43-355 (390)
31 3oja_B Anopheles plasmodium-re 100.0 8.3E-34 2.8E-38 293.5 24.9 332 15-407 50-384 (597)
32 3o6n_A APL1; leucine-rich repe 100.0 9.9E-34 3.4E-38 278.0 23.0 322 2-408 54-379 (390)
33 1o6v_A Internalin A; bacterial 100.0 5.3E-33 1.8E-37 279.2 28.7 333 2-403 55-388 (466)
34 4fmz_A Internalin; leucine ric 100.0 1.2E-32 4.2E-37 265.9 28.7 306 11-379 39-345 (347)
35 3oja_B Anopheles plasmodium-re 100.0 2.6E-33 8.8E-38 289.8 23.3 310 40-406 49-361 (597)
36 1o6v_A Internalin A; bacterial 100.0 3.1E-32 1E-36 273.6 28.3 314 1-382 76-390 (466)
37 1xku_A Decorin; proteoglycan, 100.0 5.4E-32 1.8E-36 259.4 28.8 287 16-378 31-330 (330)
38 4fmz_A Internalin; leucine ric 100.0 2.3E-32 7.9E-37 264.0 26.4 303 40-402 42-345 (347)
39 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-32 1.5E-36 270.5 28.9 209 9-253 35-243 (457)
40 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-32 1.3E-36 260.5 23.5 298 4-378 15-331 (332)
41 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-31 5E-36 279.5 28.7 370 1-384 84-584 (635)
42 1ogq_A PGIP-2, polygalacturona 100.0 7E-33 2.4E-37 263.1 16.8 247 70-381 52-305 (313)
43 1jl5_A Outer protein YOPM; leu 100.0 6.4E-32 2.2E-36 269.1 21.5 336 9-404 5-371 (454)
44 3bz5_A Internalin-J, INLJ; leu 100.0 1E-30 3.4E-35 260.7 27.2 296 1-381 50-353 (457)
45 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-31 2.2E-35 252.1 23.8 283 43-400 34-330 (332)
46 1xku_A Decorin; proteoglycan, 100.0 5.7E-30 1.9E-34 245.3 27.1 264 43-380 32-306 (330)
47 3zyi_A Leucine-rich repeat-con 100.0 7.5E-29 2.6E-33 247.9 26.1 250 71-383 57-306 (452)
48 2z66_A Variable lymphocyte rec 100.0 2.6E-29 8.9E-34 238.1 20.3 249 71-382 10-263 (306)
49 3zyj_A Leucine-rich repeat-con 100.0 9E-29 3.1E-33 246.5 24.8 250 71-383 46-295 (440)
50 2z80_A TOLL-like receptor 2, v 100.0 1.8E-29 6.2E-34 244.1 18.6 251 71-384 55-318 (353)
51 3zyj_A Leucine-rich repeat-con 100.0 9.9E-29 3.4E-33 246.2 22.9 253 90-408 44-297 (440)
52 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4E-33 246.5 23.1 253 90-408 55-308 (452)
53 2z80_A TOLL-like receptor 2, v 100.0 5.1E-29 1.8E-33 240.9 17.7 282 14-360 29-318 (353)
54 4fcg_A Uncharacterized protein 100.0 1.6E-28 5.4E-33 234.5 20.4 226 88-380 80-314 (328)
55 1ozn_A Reticulon 4 receptor; N 100.0 5.4E-29 1.8E-33 233.4 16.8 226 71-382 14-240 (285)
56 2z66_A Variable lymphocyte rec 100.0 1.4E-28 4.6E-33 233.2 18.0 278 19-385 10-292 (306)
57 1z7x_W Ribonuclease inhibitor; 100.0 5.7E-31 2E-35 264.3 0.6 341 11-381 23-412 (461)
58 4fcg_A Uncharacterized protein 100.0 5.6E-28 1.9E-32 230.7 21.2 233 15-356 80-314 (328)
59 3g06_A SSPH2 (leucine-rich rep 100.0 3.2E-27 1.1E-31 242.4 28.2 263 16-385 40-302 (622)
60 3g06_A SSPH2 (leucine-rich rep 100.0 5.7E-27 1.9E-31 240.5 25.3 261 1-367 48-308 (622)
61 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.9E-32 224.4 17.8 215 3-232 21-239 (285)
62 1wwl_A Monocyte differentiatio 100.0 1.8E-29 6.1E-34 239.7 5.4 228 91-381 65-310 (312)
63 1z7x_W Ribonuclease inhibitor; 100.0 4.9E-31 1.7E-35 264.8 -6.6 357 15-401 2-409 (461)
64 3o53_A Protein LRIM1, AGAP0063 99.9 5.2E-29 1.8E-33 237.0 4.4 204 109-385 76-281 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-28 9.5E-33 232.0 4.1 217 71-361 61-281 (317)
66 3oja_A Leucine-rich immune mol 99.9 3E-27 1E-31 237.7 11.3 234 17-375 35-270 (487)
67 2z62_A TOLL-like receptor 4, v 99.9 1.6E-25 5.6E-30 208.6 20.2 226 72-384 11-241 (276)
68 3oja_A Leucine-rich immune mol 99.9 4.8E-27 1.6E-31 236.2 9.8 246 88-408 33-287 (487)
69 1wwl_A Monocyte differentiatio 99.9 2.4E-27 8.3E-32 225.0 6.3 253 88-403 42-309 (312)
70 2z62_A TOLL-like receptor 4, v 99.9 7.4E-25 2.5E-29 204.2 19.1 209 144-408 28-242 (276)
71 1p9a_G Platelet glycoprotein I 99.9 7.6E-25 2.6E-29 205.1 19.2 204 109-381 6-209 (290)
72 2o6q_A Variable lymphocyte rec 99.9 2.5E-24 8.4E-29 199.9 22.4 205 114-383 17-221 (270)
73 2o6q_A Variable lymphocyte rec 99.9 5E-24 1.7E-28 197.8 21.1 206 144-407 16-222 (270)
74 1p9a_G Platelet glycoprotein I 99.9 1.2E-23 4.1E-28 197.0 20.0 205 11-233 5-210 (290)
75 3rfs_A Internalin B, repeat mo 99.9 1.7E-24 5.9E-29 201.1 12.6 179 144-386 63-241 (272)
76 3rfs_A Internalin B, repeat mo 99.9 6.3E-24 2.1E-28 197.3 13.6 62 144-205 133-194 (272)
77 4glp_A Monocyte differentiatio 99.9 5.6E-24 1.9E-28 201.6 11.4 229 90-381 65-308 (310)
78 2ca6_A RAN GTPase-activating p 99.9 4.3E-25 1.5E-29 216.1 1.9 245 88-383 31-319 (386)
79 3goz_A Leucine-rich repeat-con 99.9 1.7E-24 5.7E-29 209.9 5.4 86 297-382 198-299 (362)
80 4ay9_X Follicle-stimulating ho 99.9 4E-22 1.4E-26 192.1 19.7 242 71-377 12-256 (350)
81 2xwt_C Thyrotropin receptor; s 99.9 3.6E-22 1.2E-26 181.8 18.3 134 87-231 29-169 (239)
82 3m19_A Variable lymphocyte rec 99.9 4.8E-22 1.6E-26 182.3 18.8 180 114-382 15-194 (251)
83 3ogk_B Coronatine-insensitive 99.9 6.3E-26 2.2E-30 234.9 -8.5 355 14-381 110-527 (592)
84 3goz_A Leucine-rich repeat-con 99.9 2.9E-24 1E-28 208.1 3.2 266 20-360 2-301 (362)
85 2xwt_C Thyrotropin receptor; s 99.9 2.5E-22 8.6E-27 182.8 15.6 196 114-377 32-236 (239)
86 3ogk_B Coronatine-insensitive 99.9 1.1E-24 3.7E-29 225.6 -1.1 354 18-377 140-548 (592)
87 1h6u_A Internalin H; cell adhe 99.9 6.4E-22 2.2E-26 187.0 16.8 79 297-381 153-231 (308)
88 4glp_A Monocyte differentiatio 99.9 1.6E-22 5.3E-27 191.7 12.1 229 112-403 63-307 (310)
89 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.4E-26 178.8 18.4 181 89-358 14-194 (251)
90 2ast_B S-phase kinase-associat 99.9 1.7E-23 5.8E-28 200.8 4.4 248 71-385 50-311 (336)
91 2ast_B S-phase kinase-associat 99.9 2.7E-23 9.3E-28 199.4 5.6 229 71-365 73-315 (336)
92 2ca6_A RAN GTPase-activating p 99.9 9.4E-24 3.2E-28 206.6 1.5 189 110-360 91-320 (386)
93 4ay9_X Follicle-stimulating ho 99.9 1.3E-21 4.5E-26 188.5 14.6 246 92-406 12-261 (350)
94 1h6u_A Internalin H; cell adhe 99.9 2.2E-21 7.6E-26 183.3 15.8 198 12-237 37-235 (308)
95 2o6s_A Variable lymphocyte rec 99.9 6.2E-21 2.1E-25 169.7 14.9 152 71-231 10-161 (208)
96 2p1m_B Transport inhibitor res 99.8 3.7E-23 1.3E-27 214.2 -2.5 351 12-380 101-519 (594)
97 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 164.5 14.0 86 144-231 28-113 (208)
98 2p1m_B Transport inhibitor res 99.8 1.6E-23 5.4E-28 217.0 -9.5 376 10-402 60-518 (594)
99 3cvr_A Invasion plasmid antige 99.8 8E-20 2.7E-24 185.2 16.1 136 71-236 62-197 (571)
100 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.9E-24 183.4 15.9 183 17-237 60-249 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-19 9.6E-24 160.1 14.8 158 71-237 14-172 (220)
102 2xot_A Amphoterin-induced prot 99.8 1.5E-19 5.2E-24 174.8 13.7 104 116-231 21-125 (361)
103 2v9t_B SLIT homolog 2 protein 99.8 5.9E-19 2E-23 158.0 15.5 156 71-235 14-169 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 7.2E-19 2.5E-23 157.5 15.4 67 315-381 100-166 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 7.6E-19 2.6E-23 157.3 15.4 85 300-384 86-170 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.3E-23 162.3 15.2 142 71-231 71-213 (291)
107 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.7E-23 161.6 15.7 79 297-381 136-214 (291)
108 3e6j_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 153.4 17.1 155 71-235 22-176 (229)
109 3e6j_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 153.9 16.5 68 315-383 108-175 (229)
110 2xot_A Amphoterin-induced prot 99.8 2.3E-18 7.7E-23 166.5 14.9 154 71-233 42-204 (361)
111 1m9s_A Internalin B; cell inva 99.8 2.2E-18 7.5E-23 176.6 15.3 142 71-231 68-210 (605)
112 1m9s_A Internalin B; cell inva 99.8 5.7E-18 1.9E-22 173.6 15.2 173 12-207 39-212 (605)
113 1xeu_A Internalin C; cellular 99.7 1E-17 3.4E-22 154.3 13.4 169 15-207 18-187 (263)
114 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 146.0 14.1 80 297-380 114-194 (197)
115 4ezg_A Putative uncharacterize 99.7 2E-17 6.8E-22 145.5 12.9 60 144-203 88-147 (197)
116 1dce_A Protein (RAB geranylger 99.7 6.9E-21 2.4E-25 194.0 -11.3 192 13-224 346-566 (567)
117 1xeu_A Internalin C; cellular 99.7 7.5E-18 2.6E-22 155.1 9.6 169 144-382 19-187 (263)
118 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 182.4 5.4 163 42-237 173-335 (727)
119 3sb4_A Hypothetical leucine ri 99.7 3.8E-18 1.3E-22 162.8 7.0 75 297-373 252-327 (329)
120 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.4E-22 146.0 7.9 88 297-384 56-143 (192)
121 1w8a_A SLIT protein; signaling 99.7 1.7E-16 5.7E-21 138.8 13.0 128 71-205 11-139 (192)
122 1dce_A Protein (RAB geranylger 99.7 4.5E-19 1.5E-23 180.6 -5.2 87 296-385 464-551 (567)
123 2wfh_A SLIT homolog 2 protein 99.7 3.3E-16 1.1E-20 136.9 12.0 113 295-408 31-144 (193)
124 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.7E-22 173.4 4.5 179 138-381 218-405 (727)
125 2wfh_A SLIT homolog 2 protein 99.7 1.1E-15 3.6E-20 133.7 13.9 127 71-205 13-139 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 4.5E-16 1.5E-20 133.1 10.3 42 315-356 116-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 133.5 9.4 136 88-235 23-163 (168)
128 2o6r_A Variable lymphocyte rec 99.6 1.9E-15 6.6E-20 130.3 13.8 128 71-205 10-137 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 126.8 8.4 38 144-181 17-55 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 8.6E-16 2.9E-20 128.5 6.6 128 88-226 16-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 125.8 12.9 88 297-384 54-141 (177)
132 4fdw_A Leucine rich hypothetic 99.6 2.5E-13 8.7E-18 132.2 21.5 63 313-377 317-380 (401)
133 3sb4_A Hypothetical leucine ri 99.6 1.1E-14 3.6E-19 138.9 10.9 261 15-350 24-328 (329)
134 4fdw_A Leucine rich hypothetic 99.5 6.9E-13 2.3E-17 129.2 22.4 262 16-356 113-383 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 121.8 9.6 82 40-125 17-100 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.5E-21 139.8 -5.9 64 163-231 43-106 (198)
137 3g39_A Variable lymphocyte rec 99.5 8.7E-14 3E-18 118.8 11.0 89 296-384 31-119 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.7E-14 2.6E-18 120.0 9.9 62 316-379 85-152 (176)
139 2r9u_A Variable lymphocyte rec 99.5 2.7E-13 9.3E-18 116.1 11.1 89 295-383 33-121 (174)
140 1ds9_A Outer arm dynein; leuci 99.5 6.3E-16 2.2E-20 135.9 -6.0 43 12-56 14-62 (198)
141 3g39_A Variable lymphocyte rec 99.5 5.2E-13 1.8E-17 114.0 12.2 104 71-181 12-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 112.6 12.0 104 71-181 15-118 (174)
143 4fs7_A Uncharacterized protein 99.4 4.1E-11 1.4E-15 116.9 20.9 313 6-377 60-376 (394)
144 2ifg_A High affinity nerve gro 99.3 2.5E-12 8.6E-17 123.4 9.6 106 300-407 13-120 (347)
145 3un9_A NLR family member X1; l 99.3 1.9E-14 6.3E-19 138.9 -6.7 116 89-207 126-254 (372)
146 3un9_A NLR family member X1; l 99.3 2.5E-13 8.7E-18 131.0 -1.6 85 297-381 157-253 (372)
147 2ifg_A High affinity nerve gro 99.2 5.7E-11 1.9E-15 113.9 10.3 85 144-231 31-116 (347)
148 4fs7_A Uncharacterized protein 99.2 1.7E-09 6E-14 105.4 19.8 292 28-377 59-353 (394)
149 4gt6_A Cell surface protein; l 99.1 8.4E-09 2.9E-13 100.5 22.1 292 11-379 58-369 (394)
150 2ra8_A Uncharacterized protein 99.0 8.5E-10 2.9E-14 105.4 7.9 89 109-200 135-227 (362)
151 4h09_A Hypothetical leucine ri 98.9 1.6E-07 5.5E-12 90.9 23.1 289 11-377 41-343 (379)
152 4gt6_A Cell surface protein; l 98.9 1.8E-07 6.1E-12 91.0 20.8 290 11-379 82-390 (394)
153 2ra8_A Uncharacterized protein 98.8 3.2E-09 1.1E-13 101.4 5.5 104 16-121 107-227 (362)
154 4h09_A Hypothetical leucine ri 98.8 1.5E-06 5.2E-11 83.9 22.7 65 312-377 256-320 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 7.9E-13 86.2 1.6 120 107-231 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 2.9E-08 1E-12 85.5 0.2 115 88-205 35-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 6.6E-07 2.3E-11 81.0 6.1 67 316-384 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 3.9E-07 1.3E-11 82.5 3.8 79 293-373 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2E-06 6.9E-11 72.2 1.8 84 295-378 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 8E-06 2.7E-10 68.5 3.7 84 144-229 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 5.1E-05 1.8E-09 64.8 2.4 63 140-202 66-136 (197)
162 3rfe_A Platelet glycoprotein I 97.2 0.00058 2E-08 54.4 6.2 57 323-381 12-69 (130)
163 3rfe_A Platelet glycoprotein I 97.2 0.00079 2.7E-08 53.6 6.6 56 71-126 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00012 4E-09 62.6 0.0 114 88-204 40-169 (197)
165 2ks1_B Epidermal growth factor 82.6 0.098 3.3E-06 31.9 -1.8 7 446-452 15-21 (44)
166 2l2t_A Receptor tyrosine-prote 77.9 0.11 3.7E-06 31.7 -2.7 6 447-452 15-20 (44)
167 2lz0_A Uncharacterized protein 52.0 16 0.00054 26.8 4.0 45 156-201 8-52 (100)
168 2k1k_A Ephrin type-A receptor 48.2 1.6 5.4E-05 25.7 -1.6 11 446-456 14-24 (38)
169 2klu_A T-cell surface glycopro 45.5 1.3 4.5E-05 29.2 -2.4 14 446-459 16-29 (70)
170 2lz0_A Uncharacterized protein 43.8 37 0.0013 24.8 4.9 39 138-177 14-52 (100)
171 3iz5_q 60S ribosomal protein L 39.5 14 0.00049 18.8 1.3 16 464-479 4-19 (25)
172 3izc_q 60S ribosomal protein R 37.8 16 0.00054 18.6 1.3 15 464-478 4-18 (25)
173 2knc_B Integrin beta-3; transm 34.3 6.8 0.00023 27.4 -0.5 13 440-452 13-25 (79)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-49 Score=421.69 Aligned_cols=401 Identities=33% Similarity=0.487 Sum_probs=293.4
Q ss_pred CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcc-cccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKW-LLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
+|.+ +.+|..|+++++|++|++++|.+.+.+|.. +. .+++|++|++++|.+++..|. .+..+...|++|++++|.
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~--~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL--KMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT--TCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh--cCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCC
Confidence 4555 466666666666666666666666666654 55 566666666666666655554 344444344777777777
Q ss_pred ccccCCCC-----CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564 80 LQGPIPAP-----PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN 154 (485)
Q Consensus 80 l~~~~~~~-----~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n 154 (485)
+++..+.. +++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..++. +++|++|++++|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-------l~~L~~L~L~~n 452 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-------LSKLRDLKLWLN 452 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-------CTTCCEEECCSS
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-------CCCCCEEECCCC
Confidence 76655543 456888888888888778888888888888888888888777765554 477788888888
Q ss_pred cccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccC
Q 039564 155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNL 234 (485)
Q Consensus 155 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 234 (485)
.+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|..+ ..+++|++|++++|.+.+.+
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEEC
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcC
Confidence 8777777777777788888888887777777777777888888888888777777776 66777888888888777777
Q ss_pred Chhhhcccccceeccccchhhhhcccccccccccc---------------------------------cCcCccc-----
Q 039564 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFY---------------------------------GYFPHYY----- 276 (485)
Q Consensus 235 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~----- 276 (485)
|.. +..+++|+.++++++.....++..+...... +..+..+
T Consensus 531 p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 531 PAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 754 6677777777777655443322211110000 0000000
Q ss_pred -ceEEeeecCcc---cccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCC
Q 039564 277 -YSLTMSNKGQM---LSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352 (485)
Q Consensus 277 -~~l~~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (485)
....+..+... ......+..|+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 00000000001 11122356799999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSE 416 (485)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c~~~~ 416 (485)
|+++|.+|..+..+++|++|++++|+++|.+|...++.++....|.|||.+||.|+. .|....
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999999999999999999999999999999999999999999999986 886543
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-44 Score=385.94 Aligned_cols=258 Identities=21% Similarity=0.261 Sum_probs=188.3
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..+..+ ..+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEE
Confidence 568888888888887778888889999999999999988888889999999999999999887767776 788999999
Q ss_pred EccCccCCccCChhhhcccccceeccccchhhhhcc-----cccccccccccCcC-------------------------
Q 039564 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNF-----LSSYFSFDFYGYFP------------------------- 273 (485)
Q Consensus 224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------- 273 (485)
++++|.+. .++...|..+++|+.++++++...... ..-..+.+.+..+|
T Consensus 344 ~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp ECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred ECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 99999887 565556788888888888765422100 00000001111111
Q ss_pred ---cccceEEeeecCcccc----cccccccccEEEcCCCcCc-----ccCchhhccCCCCCEEeCcCceecccCCccccC
Q 039564 274 ---HYYYSLTMSNKGQMLS----YEKIPYILTAVILSSNGFH-----GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGD 341 (485)
Q Consensus 274 ---~~~~~l~~~~~~~~~~----~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 341 (485)
..+..+++..+..... ....++.|+.|++++|.+. +..+..+..+++|++|+|++|++++..|..|..
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 1234444544443321 1222456667777777665 233455778888999999999998888888889
Q ss_pred CCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 342 LTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 342 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+..+++.+||+.|+|++
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 99999999999999876666665 78999999999999887753 55778889999999999875
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-43 Score=376.59 Aligned_cols=382 Identities=30% Similarity=0.368 Sum_probs=235.2
Q ss_pred CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCC-CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPS-MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
+|.+ +.+|.. .+++|++|++++|.+.+.+|..+. . +++|++|++++|.+++..|. .+..+ ..|++|++++|.
T Consensus 256 ~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~--~~~~~L~~L~Ls~n~l~~~~p~-~~~~l-~~L~~L~L~~n~ 329 (768)
T 3rgz_A 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSGNHFYGAVPP-FFGSC-SLLESLALSSNN 329 (768)
T ss_dssp SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSC--TTCTTCSEEECCSSEEEECCCG-GGGGC-TTCCEEECCSSE
T ss_pred CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHH--hhcCcCCEEECcCCcCCCccch-HHhcC-CCccEEECCCCc
Confidence 4555 455544 566667777776666666666655 3 36666677766666655543 23333 333666666666
Q ss_pred ccccCCCC----CCCCcEEEccCCcccccCChhhcCCC-CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564 80 LQGPIPAP----PTKTRHYLVSKNNLTGEIPSWICNLS-SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN 154 (485)
Q Consensus 80 l~~~~~~~----~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n 154 (485)
+++.+|.. +++|++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. ..+++|++|++++|
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-----NPKNTLQELYLQNN 404 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC-----STTCCCCEEECCSS
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh-----cccCCccEEECCCC
Confidence 66555432 56666666666666666666666665 6666666666666555544332 11245555555555
Q ss_pred cccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccC
Q 039564 155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNL 234 (485)
Q Consensus 155 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 234 (485)
.+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCC
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcC
Confidence 5555555555555555555555555555555555555555555555555555555544 44555555555555555444
Q ss_pred ChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc---cccccccEEEcCCCcCcccC
Q 039564 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE---KIPYILTAVILSSNGFHGEI 311 (485)
Q Consensus 235 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~ 311 (485)
|.. +..+++|+.++++++.........+. .+ ..+..+++..+...+..+ ..++.|+.|++++|.++|.+
T Consensus 483 p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~------~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 483 PSG-LSNCTNLNWISLSNNRLTGEIPKWIG------RL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCSCCCGGGG------GC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CHH-HhcCCCCCEEEccCCccCCcCChHHh------cC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 432 44455555555544432221111110 00 123334444443332221 12445555666655555444
Q ss_pred c----------------------------------------------------------------------hhhccCCCC
Q 039564 312 P----------------------------------------------------------------------TSIANLKGL 321 (485)
Q Consensus 312 p----------------------------------------------------------------------~~~~~l~~L 321 (485)
| ..+..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 4 445557889
Q ss_pred CEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCC
Q 039564 322 QVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGN 400 (485)
Q Consensus 322 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n 400 (485)
+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|++++|+++|.+|.. ..+..+..+++++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999976 46677888888888
Q ss_pred CCCC
Q 039564 401 SGLC 404 (485)
Q Consensus 401 ~~lc 404 (485)
+...
T Consensus 715 ~l~g 718 (768)
T 3rgz_A 715 NLSG 718 (768)
T ss_dssp EEEE
T ss_pred cccc
Confidence 6543
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-41 Score=352.98 Aligned_cols=347 Identities=16% Similarity=0.187 Sum_probs=261.9
Q ss_pred CCcccccCCCCCCcEEEccCCcCcCc-----------------CCCCCCC--CCCCCccEEEcCCCcccccCCCC---CC
Q 039564 32 IPKWLLNPSMQNFSYLNLSKNSLTGF-----------------DQHPSVF--PWSSGEFTLDLSSNFLQGPIPAP---PT 89 (485)
Q Consensus 32 ~p~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~~--~~~~lL~~L~l~~n~l~~~~~~~---~~ 89 (485)
+|..++ .+++|++|+|++|.+++. .|. .+. ++..+ ++|++++|.+.+.+|.. ++
T Consensus 198 ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L-~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDL-TDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTC-CEEEEECCTTCSSCCTTTTTCS
T ss_pred CCHHHh--cccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCC-CEEEecCCcCCccChHHHhcCC
Confidence 677777 788889999998888883 443 344 44444 88899888888887765 78
Q ss_pred CCcEEEccCCc-ccc-cCChhhcCC------CCCCEEEcccCcccccCCC--ccccCcccccCCCCccEEEccCCccccc
Q 039564 90 KTRHYLVSKNN-LTG-EIPSWICNL------SSLYILDLSDNNLSGELPR--CLGNFSDTFMNGSNLGIIDMSHNLLQGR 159 (485)
Q Consensus 90 ~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~~~~~l~~L~~L~Ls~n~i~~~ 159 (485)
+|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++. +++|++|++++|.++|.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-------l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-------MKKLGMLECLYNQLEGK 345 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-------CTTCCEEECCSCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-------CCCCCEEeCcCCcCccc
Confidence 88888888887 887 788877776 88888888888888 7775 4444 47888888888888877
Q ss_pred CCccccCCCCCcEEEccCCcccCCcChhhhCCCC-CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564 160 IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE-LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY 238 (485)
Q Consensus 160 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 238 (485)
+| .|..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+....+++|+.|++++|.+.+..|..
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~- 421 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN- 421 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-
Confidence 88 7888888888888888886 56667888888 888888888887 6776653233447888888888887666644
Q ss_pred hc-------ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccc----------cccccEEE
Q 039564 239 FQ-------CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKI----------PYILTAVI 301 (485)
Q Consensus 239 ~~-------~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~L~~L~ 301 (485)
+. .+.+|+.++++++..... .... ..-...+..+.+..+......... ++.|+.|+
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKF-PKEL------FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSC-CTHH------HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred hcccccccccCCCCCEEECcCCccCcC-CHHH------HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 33 455677777665432210 0000 000123455566555544222211 12899999
Q ss_pred cCCCcCcccCchhhc--cCCCCCEEeCcCceecccCCccccCCCCCCEEEC------CCCcCcccCcccccCCCCCCEEe
Q 039564 302 LSSNGFHGEIPTSIA--NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL------SNNWFSGQIPQQLTGLTFLEFFN 373 (485)
Q Consensus 302 Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~ 373 (485)
+++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|+
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 9999999 7888887 99999999999999996 8999999999999999 56788889999999999999999
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 374 VSHNNLTGPIPEANQFPTFDSSSFDGNSGLCG 405 (485)
Q Consensus 374 l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~ 405 (485)
+++|++ +.+|.... +.+..+++.+|+..|-
T Consensus 573 Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT-PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred CCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence 999999 67777533 7888999999998873
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-40 Score=344.88 Aligned_cols=393 Identities=19% Similarity=0.185 Sum_probs=235.1
Q ss_pred ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccC-CCC
Q 039564 9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI-PAP 87 (485)
Q Consensus 9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~-~~~ 87 (485)
|..|+++++|++|+|++|.+.+..|..|. .+++|++|++++|.++++.+. .+..+ ..|++|++++|.+++.. |..
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~l~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~ 149 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFI-PLHNQ-KTLESLYLGSNHISSIKLPKG 149 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTS--SCTTCCEEECTTSCCSCGGGS-CCTTC-TTCCEEECCSSCCCCCCCCTT
T ss_pred hhhccCccccCeeeCCCCcccccChhhhc--ccccccEeeccccCcccCCcc-hhccC-CcccEEECCCCcccccCcccc
Confidence 33444444444444444444444444444 444444444444444443322 22222 22366666666655432 222
Q ss_pred --CCCCcEEEccCCcccccCChhhcCCCCCC--EEEcccCcccccCCCccccC---------------------------
Q 039564 88 --PTKTRHYLVSKNNLTGEIPSWICNLSSLY--ILDLSDNNLSGELPRCLGNF--------------------------- 136 (485)
Q Consensus 88 --~~~L~~L~l~~n~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l--------------------------- 136 (485)
+++|++|++++|.+++..|..|+.+++|+ .|++++|.+++..|..+...
T Consensus 150 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~ 229 (606)
T 3t6q_A 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229 (606)
T ss_dssp CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEE
T ss_pred cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhh
Confidence 56777777777777766666777777777 77777777765544332210
Q ss_pred -----------------------------------------cccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564 137 -----------------------------------------SDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175 (485)
Q Consensus 137 -----------------------------------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 175 (485)
...|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 230 l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp EECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred eechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence 022555667777777777776 56666777777777777
Q ss_pred cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCC-hhhhcccccceeccccchh
Q 039564 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP-SKYFQCWNAMKFVNASQLR 254 (485)
Q Consensus 176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~l~~~~~~ 254 (485)
++|.+.+..|..+..+++|++|++++|.+.+.++...+ ..+++|++|++++|.+.+... ...+..+++|+.++++++.
T Consensus 309 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh-hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence 77777666666677777777777777776655554421 566777777777776663320 2235566666666665443
Q ss_pred hhhcccccccc----------ccccc-C-----c--CcccceEEeeecCccccc---ccccccccEEEcCCCcCccc---
Q 039564 255 YMRNFLSSYFS----------FDFYG-Y-----F--PHYYYSLTMSNKGQMLSY---EKIPYILTAVILSSNGFHGE--- 310 (485)
Q Consensus 255 ~~~~~~~~~~~----------~~~~~-~-----~--~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~--- 310 (485)
........+.. .+.+. . + ...+..+++..+...... ...++.|+.|++++|.+.+.
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence 22111111100 00000 0 1 123455555555443322 22356677777777777652
Q ss_pred CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCC
Q 039564 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQF 389 (485)
Q Consensus 311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~ 389 (485)
.+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++..|.. ..+
T Consensus 468 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence 22457777778888888887777777777788888888888888887777778888888 8888888887665543 345
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 039564 390 PTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 390 ~~l~~~~~~~n~~lc~~~~ 408 (485)
+.+..+++.+||+.|+|+.
T Consensus 547 ~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 547 SQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp HTSSEEECTTCCEECSGGG
T ss_pred CCCCEEeCCCCCccccCCc
Confidence 6677888999999998864
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-40 Score=345.20 Aligned_cols=389 Identities=19% Similarity=0.159 Sum_probs=275.1
Q ss_pred CCCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|.+..+|. .|+++++|++|++++|.+++..|..|. .+++|++|++++|.+++..|. .+.++ ..|++|++++|.
T Consensus 40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~-~~~~l-~~L~~L~L~~n~ 115 (606)
T 3vq2_A 40 SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPG-SFSGL-TSLENLVAVETK 115 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTT-SSTTC-TTCCEEECTTSC
T ss_pred CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChh-hcCCc-ccCCEEEccCCc
Confidence 4677755544 888999999999999999977788888 899999999999999887665 34444 445999999999
Q ss_pred ccccCCCC---CCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCc------------------
Q 039564 80 LQGPIPAP---PTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------ 137 (485)
Q Consensus 80 l~~~~~~~---~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------ 137 (485)
+++..+.. +++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..|..++.+.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence 88766443 8899999999999986 5688999999999999999988865554433221
Q ss_pred ---cc---------------------------------------------------------------------------
Q 039564 138 ---DT--------------------------------------------------------------------------- 139 (485)
Q Consensus 138 ---~~--------------------------------------------------------------------------- 139 (485)
..
T Consensus 196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 00
Q ss_pred ---------------------------ccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCC
Q 039564 140 ---------------------------FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS 192 (485)
Q Consensus 140 ---------------------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 192 (485)
+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+. ..+..++
T Consensus 276 ~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~ 350 (606)
T 3vq2_A 276 DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALP 350 (606)
T ss_dssp GGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCT
T ss_pred ccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCC
Confidence 11122333333333333 1222 11 333333333333322111 1345677
Q ss_pred CCCEEEeecccccccc--CCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccccc
Q 039564 193 ELDILVLQSNNFHGEI--KEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYG 270 (485)
Q Consensus 193 ~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 270 (485)
+|++|++++|.+.+.. +..+ ..+++|++|++++|.+. .+| ..+..+++|+.+++.++......... .+.
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~ 421 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSD--LGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFS-----AFL 421 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHH--HCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTT-----TTT
T ss_pred CCCEEECcCCccCCCcchhhhh--ccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChh-----hhh
Confidence 7888888888776542 4444 56777888888887776 455 34666777777777655433221100 011
Q ss_pred CcCcccceEEeeecCccccc---ccccccccEEEcCCCcCcc-cCchhhccCCCCCEEeCcCceecccCCccccCCCCCC
Q 039564 271 YFPHYYYSLTMSNKGQMLSY---EKIPYILTAVILSSNGFHG-EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346 (485)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 346 (485)
.. ..+..+++..+...... ...++.|+.|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 422 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 422 SL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 11 23455566555544322 2346789999999999997 4788899999999999999999999999999999999
Q ss_pred EEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCC-CCCCCCCCCCCCCCCCCCC
Q 039564 347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFP-TFDSSSFDGNSGLCGKPLF 409 (485)
Q Consensus 347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n~~lc~~~~~ 409 (485)
.|++++|++++.+|..+..+++|+.|++++|+++. +|.. ..++ .+..+++.+||+.|+|+..
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 99999999999889999999999999999999984 4543 3444 4788899999999999874
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-39 Score=324.87 Aligned_cols=375 Identities=21% Similarity=0.208 Sum_probs=290.2
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ 81 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~ 81 (485)
+++++.+|. +. ++|++|+|++|.+++..|..|. .+++|++|++++|.+.+..+. ..+.....|++|++++|.++
T Consensus 19 ~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 19 NRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp SSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTC
T ss_pred CCCcccCCC-CC--CccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECc-ccccccccCCEEeCCCCccC
Confidence 567788887 33 8999999999999988888998 899999999999999865544 34555555599999999999
Q ss_pred ccCCCC---CCCCcEEEccCCcccccCChh--hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc
Q 039564 82 GPIPAP---PTKTRHYLVSKNNLTGEIPSW--ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156 (485)
Q Consensus 82 ~~~~~~---~~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i 156 (485)
+..|.. +++|++|++++|.+++..+.. |..+++|++|++++|.+++..|.. .|..+++|++|++++|.+
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS------FFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG------GGGGCTTCCEEECTTCCB
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc------ccCCCCcccEEeCCCCcc
Confidence 887655 899999999999998755554 899999999999999999766753 244569999999999999
Q ss_pred cccCCccccCC--CCCcEEEccCCcccCCcChhh--------hCCCCCCEEEeeccccccccCCcccc-CCCCCccEEEc
Q 039564 157 QGRIPKSLANC--AVLEIIDLGNNQIIDTFPAWL--------GTLSELDILVLQSNNFHGEIKEHKME-CGFPKLRIVDL 225 (485)
Q Consensus 157 ~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~l 225 (485)
++..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+.. ...++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98888888776 789999999999977655432 35688999999999998777665421 12378899999
Q ss_pred cCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccc---ccccccccEEEc
Q 039564 226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSY---EKIPYILTAVIL 302 (485)
Q Consensus 226 ~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~L 302 (485)
++|...+.... ...+.......+... ....+..+++..+...... ...++.|+.|++
T Consensus 247 ~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 247 SNSYNMGSSFG--HTNFKDPDNFTFKGL------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp TTCTTTSCCTT--CCSSCCCCTTTTGGG------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccc--hhhhccCcccccccc------------------cccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence 98866532211 111111110000000 0012223333333222211 223567999999
Q ss_pred CCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564 303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 303 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
++|.+.+..|..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++.
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 99999988898999999999999999999988899999999999999999999988899999999999999999999976
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 383 IPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 383 ~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
.+.. ..++.++.+++.+||+.|+||.
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCCc
Confidence 5544 4677889999999999999873
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-39 Score=336.66 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=93.6
Q ss_pred cceEEeeecCcccccc---cccccccEEEcCCCcCcccCc--------hhhccCCCCCEEeCcCceecccCCccccCCCC
Q 039564 276 YYSLTMSNKGQMLSYE---KIPYILTAVILSSNGFHGEIP--------TSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344 (485)
Q Consensus 276 ~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 344 (485)
+..+++..+....... ..++.|+.|++++|.+++..+ ..+.++++|++|+|++|++++..+..|.++++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 4555555554443222 235667777777777764321 22667777888888888777444456788888
Q ss_pred CCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q 039564 345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN--QFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~ 408 (485)
|+.|++++|++++..+..|..+++|+.|++++|++++..|... .++.+..+++.+|||.|+|+.
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 8888888888886666677888888888888888887655432 456788889999999999985
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-40 Score=341.54 Aligned_cols=360 Identities=14% Similarity=0.169 Sum_probs=297.8
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCC-----------------CCcccccCCCCCCcEEEccCCcCcCcCCCCCCC
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGN-----------------IPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVF 64 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~-----------------~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 64 (485)
+|+++.+|+.|+++++|++|+|++|.+++. +|+.++...+++|++|++++|.+.+..|. .+.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHh
Confidence 467734999999999999999999999985 88886522589999999999999998875 556
Q ss_pred CCCCCccEEEcCCCc-ccc-cCCCC---C------CCCcEEEccCCcccccCCh--hhcCCCCCCEEEcccCcccccCCC
Q 039564 65 PWSSGEFTLDLSSNF-LQG-PIPAP---P------TKTRHYLVSKNNLTGEIPS--WICNLSSLYILDLSDNNLSGELPR 131 (485)
Q Consensus 65 ~~~~lL~~L~l~~n~-l~~-~~~~~---~------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~ 131 (485)
++..+ ++|++++|+ +++ .+|.. + ++|++|++++|.++ .+|. .|+++++|++|++++|.++|.+|
T Consensus 271 ~l~~L-~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 ALPEM-QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TCSSC-CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred cCCCC-CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 66555 999999998 887 66654 3 89999999999999 8888 99999999999999999999998
Q ss_pred ccccCcccccCCCCccEEEccCCcccccCCccccCCCC-CcEEEccCCcccCCcChhhhCCC--CCCEEEeecccccccc
Q 039564 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV-LEIIDLGNNQIIDTFPAWLGTLS--ELDILVLQSNNFHGEI 208 (485)
Q Consensus 132 ~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~ 208 (485)
.++.+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+.+
T Consensus 348 ~~~~l-------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 348 AFGSE-------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CCEEE-------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred hhCCC-------CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 66554 89999999999999 88999999999 999999999997 6777777655 8999999999999888
Q ss_pred CCccccC-------CCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc--ccCcCcccceE
Q 039564 209 KEHKMEC-------GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF--YGYFPHYYYSL 279 (485)
Q Consensus 209 ~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 279 (485)
|..+ . .+++|++|++++|.+. .+|...+..+++|+.++++++... .+......... ... -..+..+
T Consensus 419 p~~l--~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~-l~~L~~L 493 (636)
T 4eco_A 419 GKNF--DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN-TYLLTSI 493 (636)
T ss_dssp TCSS--CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT-GGGCCEE
T ss_pred hhhh--cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccc-cCCccEE
Confidence 8776 4 6789999999999999 889888888999999998876543 21111110000 000 0156677
Q ss_pred EeeecCcccccc----cccccccEEEcCCCcCcccCchhhccCCCCCEEeC------cCceecccCCccccCCCCCCEEE
Q 039564 280 TMSNKGQMLSYE----KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSL------ANNNLEGHIPSCFGDLTKLESLD 349 (485)
Q Consensus 280 ~~~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~ 349 (485)
++..+....... ..++.|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|+.|+
T Consensus 494 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp ECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred ECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 777776653222 256789999999999996 8999999999999999 56788889999999999999999
Q ss_pred CCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 350 LSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 350 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
+++|++ +.+|..+. ++|+.|++++|++....
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 999999 47888766 89999999999987643
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-39 Score=342.23 Aligned_cols=347 Identities=16% Similarity=0.181 Sum_probs=231.9
Q ss_pred CCcccccCCCCCCcEEEccCCcCcC-----------------cCCCCCCC-CCCCCccEEEcCCCcccccCCCC---CCC
Q 039564 32 IPKWLLNPSMQNFSYLNLSKNSLTG-----------------FDQHPSVF-PWSSGEFTLDLSSNFLQGPIPAP---PTK 90 (485)
Q Consensus 32 ~p~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~~-~~~~lL~~L~l~~n~l~~~~~~~---~~~ 90 (485)
+|..++ .+++|++|+|++|.+++ ..|. .+. ..+..|++|++++|.+.+.+|.. +++
T Consensus 440 IP~~l~--~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQ--RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hhHHHh--cCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 566666 67777777777777776 1333 332 13333477777777777776654 677
Q ss_pred CcEEEccCCc-ccc-cCChhhcCCC-------CCCEEEcccCcccccCCC--ccccCcccccCCCCccEEEccCCccccc
Q 039564 91 TRHYLVSKNN-LTG-EIPSWICNLS-------SLYILDLSDNNLSGELPR--CLGNFSDTFMNGSNLGIIDMSHNLLQGR 159 (485)
Q Consensus 91 L~~L~l~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~~~~~l~~L~~L~Ls~n~i~~~ 159 (485)
|++|++++|. +++ .+|..++.++ +|+.|++++|.++ .+|. .++. +++|+.|++++|.++ .
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-------L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-------MVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-------CTTCCEEECTTSCCC-B
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-------CCCCCEEECCCCCcc-c
Confidence 7777777776 766 6666555444 7777777777777 6665 4433 467777777777777 6
Q ss_pred CCccccCCCCCcEEEccCCcccCCcChhhhCCCC-CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564 160 IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE-LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY 238 (485)
Q Consensus 160 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 238 (485)
+| .|..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.....++|+.|++++|.+.+.+|...
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 66 6777777777777777775 56666677776 777777777776 56655522222347777777777665444211
Q ss_pred --hc--ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccc----------cccccEEEcCC
Q 039564 239 --FQ--CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKI----------PYILTAVILSS 304 (485)
Q Consensus 239 --~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~L~~L~Ls~ 304 (485)
.. ...+|+.++++++.... +... ...-...+..+.+..+......... ++.|+.|+|++
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~-lp~~------~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQK-FPTE------LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCS-CCHH------HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred hhhccccCCCcCEEEccCCcCCc-cCHH------HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence 11 22355555555432211 0000 0000123445555555443211111 22799999999
Q ss_pred CcCcccCchhhc--cCCCCCEEeCcCceecccCCccccCCCCCCEEECCC------CcCcccCcccccCCCCCCEEeccC
Q 039564 305 NGFHGEIPTSIA--NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN------NWFSGQIPQQLTGLTFLEFFNVSH 376 (485)
Q Consensus 305 n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~l~~ 376 (485)
|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 9999 7888887 89999999999999996 788899999999999976 788889999999999999999999
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564 377 NNLTGPIPEANQFPTFDSSSFDGNSGLC 404 (485)
Q Consensus 377 N~l~~~~p~~~~~~~l~~~~~~~n~~lc 404 (485)
|++ +.+|... .+.+..+++++|+...
T Consensus 816 N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 816 NDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp SCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred CCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 999 7788763 3678888888887654
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=324.14 Aligned_cols=339 Identities=18% Similarity=0.138 Sum_probs=270.2
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ 81 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~ 81 (485)
++++..+|..+. +++++|+|++|.+++..|..|. .+++|++|+|++|.++++.+. .+.+ +..|++|++++|.++
T Consensus 20 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 20 RKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPG-AFNN-LFNLRTLGLRSNRLK 93 (477)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTT-TTTT-CTTCCEEECCSSCCC
T ss_pred CCCcCcCCCCCC--CCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChh-hhhC-CccCCEEECCCCcCC
Confidence 456778887664 6889999999999877777888 889999999999998887664 3444 444499999999888
Q ss_pred ccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc
Q 039564 82 GPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG 158 (485)
Q Consensus 82 ~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~ 158 (485)
...+.. +++|++|++++|.+.+..+..|.++++|++|++++|.+++..|.. |..+++|++|++++|.+++
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-------FSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-------STTCTTCCEEEEESCCCSS
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-------ccCCCCCCEEECCCCcCcc
Confidence 766543 788899999999888888888888899999999998888555543 4456889999999998886
Q ss_pred cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564 159 RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY 238 (485)
Q Consensus 159 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 238 (485)
..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|...+.++... ....+|+.|++++|.++ .+|...
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~ 243 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLA 243 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCHHH
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCHHH
Confidence 666778888899999999988888777788888899999999888777777765 34568899999988887 566544
Q ss_pred hcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccC
Q 039564 239 FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANL 318 (485)
Q Consensus 239 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 318 (485)
+.. ++.|+.|++++|.+.+..+..+..+
T Consensus 244 ~~~----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 244 VRH----------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp HTT----------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTC
T ss_pred hcC----------------------------------------------------ccccCeeECCCCcCCccChhhcccc
Confidence 433 3348899999999998888889999
Q ss_pred CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCC
Q 039564 319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFD 398 (485)
Q Consensus 319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~ 398 (485)
++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+....+.......+.
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~ 351 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN 351 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCT
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccC
Confidence 99999999999999888999999999999999999999877788899999999999999998754432112223345567
Q ss_pred CCCCCCCCCC
Q 039564 399 GNSGLCGKPL 408 (485)
Q Consensus 399 ~n~~lc~~~~ 408 (485)
++...|..|.
T Consensus 352 ~~~~~C~~p~ 361 (477)
T 2id5_A 352 RQQPTCATPE 361 (477)
T ss_dssp TCCCBEEESG
T ss_pred ccCceeCCch
Confidence 7777776654
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-38 Score=328.60 Aligned_cols=394 Identities=19% Similarity=0.176 Sum_probs=259.3
Q ss_pred CCCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|+|+.+|+ +|+++++|++|||++|+|++..|.+|. .+++|++|+|++|+++++.+. .|..+..|++|++++|.
T Consensus 60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~--~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALG--AFSGLSSLQKLVAVETN 135 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGG--GGTTCTTCCEEECTTSC
T ss_pred eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHH--HhcCCCCCCEEECCCCc
Confidence 4677866764 788888888888888888866666777 788888888888888876543 44544555888888888
Q ss_pred ccccCCCC---CCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCc------------------
Q 039564 80 LQGPIPAP---PTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------ 137 (485)
Q Consensus 80 l~~~~~~~---~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------ 137 (485)
+++..+.. +++|++|++++|.+++ ..|..++.+++|++|++++|++++..|..+..+.
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 88766543 7888888888888875 3577788888888888888887755444332211
Q ss_pred --------------------------------------------------------------------------------
Q 039564 138 -------------------------------------------------------------------------------- 137 (485)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (485)
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence
Q ss_pred ----ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh-------------------hhhCCCCC
Q 039564 138 ----DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA-------------------WLGTLSEL 194 (485)
Q Consensus 138 ----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------~~~~l~~L 194 (485)
..+....+++.+++.++.+... ..+.....++.|++.+|.+....+. ....+++|
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L 373 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred cchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence 0000011112222222221110 1122334455666665554332211 12356778
Q ss_pred CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCc
Q 039564 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH 274 (485)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (485)
+.|++++|.+....+.......+.+|+.+++..+.... .+.. +..+..++.+++............. .... .
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~-----~~~l-~ 445 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSV-----FLSL-R 445 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSC-CTTCTTCCEEECTTSEEESTTSSCT-----TTTC-T
T ss_pred ccchhhccccccccccccchhhhhhhhhhhcccccccc-cccc-ccccccccchhhhhccccccccccc-----cccc-c
Confidence 88888888775332222112456677777777776652 2222 4455666665554332221110000 0000 1
Q ss_pred ccceEEeeecCcccc---cccccccccEEEcCCCcCc-ccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564 275 YYYSLTMSNKGQMLS---YEKIPYILTAVILSSNGFH-GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350 (485)
Q Consensus 275 ~~~~l~~~~~~~~~~---~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (485)
....+++..+..... ....++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|+.|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 223333333333222 2234678999999999854 457888999999999999999999999999999999999999
Q ss_pred CCCcCcccCcccccCCCCCCEEeccCCcccccCCCCC-CC-CCCCCCCCCCCCCCCCCCC
Q 039564 351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN-QF-PTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 351 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~l~~~~~~~n~~lc~~~~ 408 (485)
++|++++..|..|..+++|++|++++|++++..|... .+ ..+..+++.+|||.|+|.+
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999998888999999999999999999999888653 33 5688899999999999965
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=327.71 Aligned_cols=390 Identities=19% Similarity=0.167 Sum_probs=275.1
Q ss_pred CCCCCCCCC-hhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|++..++ .+|.++++|++|+|++|.+++..|..|. .+++|++|++++|.+++..+. .+.....|++|++++|.
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALG--AFSGLSSLQKLVAVETN 111 (570)
T ss_dssp CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTSC
T ss_pred cCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHh--hhcCccccccccccccc
Confidence 467775554 4788899999999999998877777787 889999999999998876654 44444445999999998
Q ss_pred ccccCCC---CCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCc------------------
Q 039564 80 LQGPIPA---PPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------ 137 (485)
Q Consensus 80 l~~~~~~---~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------ 137 (485)
+++..+. .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..|..++.+.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 8876542 28899999999998886 4688899999999999999988754444332211
Q ss_pred ---ccccCCCCccEEEccCC----------------------------------------------------------cc
Q 039564 138 ---DTFMNGSNLGIIDMSHN----------------------------------------------------------LL 156 (485)
Q Consensus 138 ---~~~~~l~~L~~L~Ls~n----------------------------------------------------------~i 156 (485)
..|.. .+|+.|++++| .+
T Consensus 192 ~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 192 IQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp ECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred cCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 01111 12333333322 11
Q ss_pred cccCCccccCCCCCcEEEccCCcccCCcChhhh--------------------CCCCCCEEEeeccccccccCCccccCC
Q 039564 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG--------------------TLSELDILVLQSNNFHGEIKEHKMECG 216 (485)
Q Consensus 157 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~ 216 (485)
.+..|..+..+++|++|++++|.+.. +|..+. .+++|++|++++|.+.+..+. ..
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~----~~ 345 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE----VD 345 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC----CB
T ss_pred hhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc----cc
Confidence 12223333444555555555555432 333333 345555555555554433332 45
Q ss_pred CCCccEEEccCccCCccCC-hhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccc----cc
Q 039564 217 FPKLRIVDLSNNSFTGNLP-SKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS----YE 291 (485)
Q Consensus 217 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 291 (485)
+++|+.|++++|.+.+... ...+..+++|+.++++++........ + ... ..+..+.+..+..... ..
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~------~~l-~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F------LGL-EQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E------ETC-TTCCEEECTTSEEESCTTSCTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c------ccc-CCCCEEEccCCccccccchhhh
Confidence 7899999999999874321 23467888999998887643322110 1 111 2345566655544332 22
Q ss_pred cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCC
Q 039564 292 KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE 370 (485)
Q Consensus 292 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 370 (485)
..++.|+.|++++|.+.+..|..+..+++|++|++++|+++ +.+|..+..+++|+.|++++|++++..|..|..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 34678999999999999889999999999999999999997 57899999999999999999999998899999999999
Q ss_pred EEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 371 FFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 371 ~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
.|++++|++++..|.. ..++.+..+++.+||+.|+|+.
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999877654 4678888999999999998875
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-38 Score=325.82 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=88.7
Q ss_pred CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|.++.+ |..|+++++|++|+|++|.+.+..|..|. .+++|++|++++|.+++..+. . +..+..|++|++++|.
T Consensus 41 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAET-A-LSGPKALKHLFFIQTG 116 (606)
T ss_dssp TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTT-T-TSSCTTCCEEECTTSC
T ss_pred cCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChh-h-hcccccccEeeccccC
Confidence 35666444 55777888888888888887777777777 778888888888887776554 3 3333444888888887
Q ss_pred ccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccc
Q 039564 80 LQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLG 134 (485)
Q Consensus 80 l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 134 (485)
+++..+.. +++|++|++++|.+.+.....+..+++|++|++++|.+++..|..++
T Consensus 117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 77643322 77788888888888764434444578888888888877755454333
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-38 Score=326.68 Aligned_cols=385 Identities=19% Similarity=0.215 Sum_probs=274.6
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ 81 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~ 81 (485)
+++++++|+.+. ++|++|++++|.+++..|..|. .+++|++|++++|.+++..+. .+. ....|++|++++|.++
T Consensus 14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~-~~~-~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGD-AFY-SLGSLEHLDLSDNHLS 87 (549)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTT-TTT-TCTTCCEEECTTSCCC
T ss_pred CCccccccccCC--CCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChh-hcc-ccccCCEEECCCCccC
Confidence 567889998765 8999999999999988888888 899999999999999987654 344 4445599999999999
Q ss_pred ccCCC---CCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564 82 GPIPA---PPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 82 ~~~~~---~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~ 157 (485)
+..+. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+.+|. ..|..+++|++|++++|.++
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR------IDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------TTTTTCCEEEEEEEEETTCC
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH------hhhhcccccCeeeccCCccc
Confidence 87764 28999999999999986 3577899999999999999985556653 34556789999999999999
Q ss_pred ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccccc--CCccc----------------------
Q 039564 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI--KEHKM---------------------- 213 (485)
Q Consensus 158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~---------------------- 213 (485)
+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. +....
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 888888888888888888877764433333456777777777777766421 00000
Q ss_pred ----------------------------------------------------------------cCCCCCccEEEccCcc
Q 039564 214 ----------------------------------------------------------------ECGFPKLRIVDLSNNS 229 (485)
Q Consensus 214 ----------------------------------------------------------------~~~l~~L~~L~l~~n~ 229 (485)
....++|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 0011345666666666
Q ss_pred CCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccc-----cccccccccEEEcCC
Q 039564 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS-----YEKIPYILTAVILSS 304 (485)
Q Consensus 230 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~L~~L~Ls~ 304 (485)
+. .+|..++..+++|+.++++++.......... ...+.+ ..+..+++..+..... ....++.|+.|++++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS---ACKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH---TCTTSS-TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccch---hhhhcc-ccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 65 6676666677888888777654332210000 001111 2345566655554321 233466777777777
Q ss_pred CcCcccCchhhccCCCCCEEeCcCceecccCCcc------------------ccCCCCCCEEECCCCcCcccCcccccCC
Q 039564 305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC------------------FGDLTKLESLDLSNNWFSGQIPQQLTGL 366 (485)
Q Consensus 305 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 366 (485)
|+++ .+|..+..+++|++|++++|++++ +|.. ...+++|+.|++++|+++ .+|+ ...+
T Consensus 397 N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccC
Confidence 7777 566666666777777777766652 2221 136788999999999998 6676 4678
Q ss_pred CCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 039564 367 TFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKP 407 (485)
Q Consensus 367 ~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 407 (485)
++|+.|++++|++++.+|.. ..++.+..+++++||+.|+|+
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999999999877753 467788899999999999987
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-37 Score=320.51 Aligned_cols=359 Identities=23% Similarity=0.242 Sum_probs=261.6
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
++|+++.+|..+. ++|++|++++|.+.+..|..|. .+++|++|++++|.++++.+. .+.....|++|++++|.+
T Consensus 39 s~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 39 SNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFH--VFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp TTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTT--TTTTCTTCCEEECTTSCC
T ss_pred CCCCCccCCCCCC--CCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHH--HhCCCCCCCEEECCCCcC
Confidence 4678888998765 8999999999999977777888 899999999999999987664 444445559999999999
Q ss_pred cccCCCCCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc--c
Q 039564 81 QGPIPAPPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL--Q 157 (485)
Q Consensus 81 ~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i--~ 157 (485)
+......+++|++|++++|.+++ ..|..|+++++|++|++++|.+++. .++. +..+ +|++|++++|.+ +
T Consensus 113 ~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~----l~~L-~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP----VAHL-HLSCILLDLVSYHIK 184 (562)
T ss_dssp CEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG----GTTS-CEEEEEEEESSCCCC
T ss_pred CccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh----hhhc-eeeEEEeeccccccc
Confidence 86655568999999999999986 3468999999999999999988742 2222 1122 338888888777 5
Q ss_pred ccCCccccCCC---------------------------------------------------------------------
Q 039564 158 GRIPKSLANCA--------------------------------------------------------------------- 168 (485)
Q Consensus 158 ~~~~~~~~~l~--------------------------------------------------------------------- 168 (485)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 55555444322
Q ss_pred ------------CCcEEEccCCcccCCcChhh-----hCC--------------------------CCCCEEEeeccccc
Q 039564 169 ------------VLEIIDLGNNQIIDTFPAWL-----GTL--------------------------SELDILVLQSNNFH 205 (485)
Q Consensus 169 ------------~L~~L~Ls~n~l~~~~~~~~-----~~l--------------------------~~L~~L~L~~n~l~ 205 (485)
+|++|++++|.+++.+|..+ ..+ .+|++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 44455555555544444332 111 23444444444443
Q ss_pred cccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecC
Q 039564 206 GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKG 285 (485)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (485)
.... ...+++|++|++++|.+.+.+|.. +..+++|+.++++++...... .+
T Consensus 345 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-----------~~------------- 395 (562)
T 3a79_B 345 HMVC----PPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFF-----------KV------------- 395 (562)
T ss_dssp CCCC----CSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTT-----------HH-------------
T ss_pred cccC----ccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcc-----------cc-------------
Confidence 1110 146789999999999999666644 678888888887754322100 00
Q ss_pred cccccccccccccEEEcCCCcCcccCch-hhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCccccc
Q 039564 286 QMLSYEKIPYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLT 364 (485)
Q Consensus 286 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 364 (485)
......++.|+.|++++|.+.+.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 396 --~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~ 470 (562)
T 3a79_B 396 --ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT 470 (562)
T ss_dssp --HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT
T ss_pred --hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc
Confidence 00112356799999999999975554 588899999999999999887776654 78999999999999 6777777
Q ss_pred CCCCCCEEeccCCcccccCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 039564 365 GLTFLEFFNVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 365 ~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
.+++|+.|++++|++++ +|.. ..++.+..+++.+||+.|+|+.
T Consensus 471 ~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 471 HLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 99999999999999995 5543 4677888899999999999865
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=321.21 Aligned_cols=357 Identities=19% Similarity=0.223 Sum_probs=240.1
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
++|+++++|..+. ++|++|++++|.+.+..|..|. .+++|++|++++|.++++.+. .+.....|++|++++|.+
T Consensus 8 s~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 8 SKNGLIHVPKDLS--QKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDIS--VFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp TTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGG--GGTTCTTCCEEECCSSCC
T ss_pred CCCCccccccccc--ccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChH--HhhcccCCCEEecCCCce
Confidence 4677777777665 7888888888887766556677 778888888888887776553 333334448888888877
Q ss_pred cccCCCCCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCc--cEEEccCCcc-
Q 039564 81 QGPIPAPPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNL--GIIDMSHNLL- 156 (485)
Q Consensus 81 ~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L--~~L~Ls~n~i- 156 (485)
+...+..+++|++|++++|.+++ .+|..|+++++|++|++++|.+++. .+ ..+++| ++|++++|.+
T Consensus 82 ~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~-------~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 82 VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SV-------LPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GG-------GGGTTSCEEEEEEEECTTT
T ss_pred eecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hc-------cccccceeeEEEeeccccc
Confidence 75444457778888888888775 3667777777887777777776531 11 111222 3444443333
Q ss_pred -cccCCccccCC--------------------------------------------------------------------
Q 039564 157 -QGRIPKSLANC-------------------------------------------------------------------- 167 (485)
Q Consensus 157 -~~~~~~~~~~l-------------------------------------------------------------------- 167 (485)
.+..|..+..+
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 22222222221
Q ss_pred ---------------CCCcEEEccCCcccCCcChhh-----hCCC--------------------------CCCEEEeec
Q 039564 168 ---------------AVLEIIDLGNNQIIDTFPAWL-----GTLS--------------------------ELDILVLQS 201 (485)
Q Consensus 168 ---------------~~L~~L~Ls~n~l~~~~~~~~-----~~l~--------------------------~L~~L~L~~ 201 (485)
++|++|++++|.+.+.+|..+ ..++ +|+.|++++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 134444444444444444333 3333 344444444
Q ss_pred cccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEe
Q 039564 202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM 281 (485)
Q Consensus 202 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (485)
|.+.... ....+++|++|++++|.+.+.+|.. +..+++|+.++++++...... .+
T Consensus 312 n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~-----------~~--------- 366 (520)
T 2z7x_B 312 TRMVHML----CPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELS-----------KI--------- 366 (520)
T ss_dssp SCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHH-----------HH---------
T ss_pred Ccccccc----chhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccc-----------cc---------
Confidence 4443211 0146789999999999999766654 678888888887754322100 00
Q ss_pred eecCcccccccccccccEEEcCCCcCcccCchh-hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCc
Q 039564 282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTS-IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP 360 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 360 (485)
......++.|+.|++++|.+.+.+|.. +..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|
T Consensus 367 ------~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 367 ------AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp ------HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred ------hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 001123567999999999999756654 88899999999999999888877664 79999999999999 788
Q ss_pred ccccCCCCCCEEeccCCcccccCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 039564 361 QQLTGLTFLEFFNVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 361 ~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
..+..+++|+.|++++|++++ +|.. ..++.+..+++.+||+.|+|+.
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 878899999999999999995 5543 4567788899999999999865
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-38 Score=336.01 Aligned_cols=362 Identities=15% Similarity=0.173 Sum_probs=291.7
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCC-----------------CCCcccccCCCCCCcEEEccCCcCcCcCCCCCCC
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHG-----------------NIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVF 64 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~-----------------~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 64 (485)
+|++..+|+.|+++++|++|+|++|.+++ .+|..++...+++|++|+|++|.+.+..|. .+.
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~ 512 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY 512 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence 46673499999999999999999999998 388875311689999999999999988875 455
Q ss_pred CCCCCccEEEcCCCc-ccc-cCCC----------CCCCCcEEEccCCcccccCCh--hhcCCCCCCEEEcccCcccccCC
Q 039564 65 PWSSGEFTLDLSSNF-LQG-PIPA----------PPTKTRHYLVSKNNLTGEIPS--WICNLSSLYILDLSDNNLSGELP 130 (485)
Q Consensus 65 ~~~~lL~~L~l~~n~-l~~-~~~~----------~~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p 130 (485)
++..+ ++|++++|+ +++ .+|. .+++|++|++++|.++ .+|. .|+++++|+.|++++|.++ .+|
T Consensus 513 ~L~~L-~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 DLPEL-QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GCSSC-CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred CCCCC-CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 55555 999999998 887 5543 2569999999999999 8888 9999999999999999998 887
Q ss_pred CccccCcccccCCCCccEEEccCCcccccCCccccCCCC-CcEEEccCCcccCCcChhhhCCCC--CCEEEeeccccccc
Q 039564 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV-LEIIDLGNNQIIDTFPAWLGTLSE--LDILVLQSNNFHGE 207 (485)
Q Consensus 131 ~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~ 207 (485)
.++ .+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++. |+.|++++|.+.+.
T Consensus 590 -~~~-------~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 590 -AFG-------TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp -CCC-------TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred -hhc-------CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 444 4589999999999999 89999999999 999999999997 67777776654 99999999999876
Q ss_pred cCCc---cccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc--ccCcCcccceEEee
Q 039564 208 IKEH---KMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF--YGYFPHYYYSLTMS 282 (485)
Q Consensus 208 ~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 282 (485)
+|.. .....+++|+.|++++|.+. .+|..++..+++|+.++++++... .+......... ...+ ..+..+++.
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl-~~L~~L~Ls 736 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT-YLLTTIDLR 736 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG-GGCCEEECC
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc-CCccEEECC
Confidence 6532 21124568999999999999 899888889999999998876433 21111110000 0000 156677777
Q ss_pred ecCcccccc----cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcC------ceecccCCccccCCCCCCEEECCC
Q 039564 283 NKGQMLSYE----KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN------NNLEGHIPSCFGDLTKLESLDLSN 352 (485)
Q Consensus 283 ~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~ 352 (485)
.+....... ..++.|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++
T Consensus 737 ~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 776553222 246889999999999996 788999999999999976 788889999999999999999999
Q ss_pred CcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 353 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 384 (485)
|++ +.+|..+. ++|+.|++++|++....+
T Consensus 816 N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 816 NDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp SCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 999 58888765 699999999999876443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-37 Score=309.89 Aligned_cols=348 Identities=18% Similarity=0.148 Sum_probs=276.4
Q ss_pred CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCC-CcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC
Q 039564 1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNI-PKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN 78 (485)
Q Consensus 1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n 78 (485)
++|.+..+ |..|+++++|++|++++|.+.+.+ +..|. .+++|++|++++|.+++..+. .+.++ ..|++|++++|
T Consensus 38 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~n 113 (455)
T 3v47_A 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQLETG-AFNGL-ANLEVLTLTQC 113 (455)
T ss_dssp CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT--TCTTCCEEECTTCTTCEECTT-TTTTC-TTCCEEECTTS
T ss_pred cCCccCcCChhHhccCccccEEECcCCcccceECccccc--ccccCCEEeCCCCccCccChh-hccCc-ccCCEEeCCCC
Confidence 47888444 789999999999999999997655 45677 899999999999999987665 34444 45599999999
Q ss_pred cccccCC-----CCCCCCcEEEccCCcccccCChh-hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEcc
Q 039564 79 FLQGPIP-----APPTKTRHYLVSKNNLTGEIPSW-ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMS 152 (485)
Q Consensus 79 ~l~~~~~-----~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls 152 (485)
.+++..+ ..+++|++|++++|.+.+..|.. |.++++|++|++++|.+++..|..++.+. ..+|+.|+++
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-----~~~L~~L~l~ 188 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-----GKHFTLLRLS 188 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-----TCEEEEEECT
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-----cccccccccc
Confidence 9987432 23899999999999999887876 89999999999999999988787765542 3689999999
Q ss_pred CCcccccCCcc--------ccCCCCCcEEEccCCcccCCcChhhhCC---CCCCEEEeeccccccccC----------Cc
Q 039564 153 HNLLQGRIPKS--------LANCAVLEIIDLGNNQIIDTFPAWLGTL---SELDILVLQSNNFHGEIK----------EH 211 (485)
Q Consensus 153 ~n~i~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~----------~~ 211 (485)
+|.+.+..+.. +..+++|++|++++|.+.+..|..+... ++|+.|++++|...+... ..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99998655443 3366889999999999988777776654 788888888886543211 11
Q ss_pred cccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc
Q 039564 212 KMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE 291 (485)
Q Consensus 212 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (485)
+.....++|+.|++++|.+.+..| ..+..+++|+.++++++........ ..
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------------~~ 319 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDN----------------------------AF 319 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTT----------------------------TT
T ss_pred cccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChh----------------------------Hh
Confidence 111233678888888888885444 4477788888887765442221100 01
Q ss_pred cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCE
Q 039564 292 KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEF 371 (485)
Q Consensus 292 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 371 (485)
..++.|+.|++++|.+.+..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 12566999999999999888999999999999999999999888999999999999999999999777778899999999
Q ss_pred EeccCCcccccCCCC
Q 039564 372 FNVSHNNLTGPIPEA 386 (485)
Q Consensus 372 L~l~~N~l~~~~p~~ 386 (485)
|++++|++++.+|..
T Consensus 400 L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 400 IWLHTNPWDCSCPRI 414 (455)
T ss_dssp EECCSSCBCCCTTTT
T ss_pred EEccCCCcccCCCcc
Confidence 999999999988753
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=329.14 Aligned_cols=394 Identities=18% Similarity=0.132 Sum_probs=275.8
Q ss_pred CCCCCC-CCChhhhCCCCCCEEECCCCcCCCCC-CcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC
Q 039564 1 RSCNLF-EFPNFLKQQKHLKALDLSSNKLHGNI-PKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN 78 (485)
Q Consensus 1 ~~n~l~-~~p~~~~~l~~L~~L~Ls~n~~~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n 78 (485)
++|.+. ..|..|+++++|++|+|++|.+.+.+ |.+|. .+++|++|+|++|.+++..|. .+..+..|++|++++|
T Consensus 32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPD--AFQGLFHLFELRLYFC 107 (844)
T ss_dssp ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTT--SSCSCSSCCCEECTTC
T ss_pred CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHh--HccCCcccCEeeCcCC
Confidence 357773 34678888899999999988655555 67787 889999999999999887665 4444445599999999
Q ss_pred cccccCCC-----CCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEcccCcccccCCCccccCc---------------
Q 039564 79 FLQGPIPA-----PPTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSGELPRCLGNFS--------------- 137 (485)
Q Consensus 79 ~l~~~~~~-----~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--------------- 137 (485)
.+++..+. .+++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..|..++.+.
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 99875443 28899999999999987654 5789999999999999998877776655431
Q ss_pred ----ccccCCC------CccEEEccCCcccccCCccccC--------------------------------------CCC
Q 039564 138 ----DTFMNGS------NLGIIDMSHNLLQGRIPKSLAN--------------------------------------CAV 169 (485)
Q Consensus 138 ----~~~~~l~------~L~~L~Ls~n~i~~~~~~~~~~--------------------------------------l~~ 169 (485)
..+..+. .|++|++++|.+++..+..+.. .++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 1111122 3888999888776555443321 267
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 249 (485)
|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+. .++...+..+++|+.++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEE
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEE
Confidence 9999999999988888889999999999999999987777777 78899999999999998 44445588899999998
Q ss_pred ccchhhhhcccccccc----------cccccCcC--cccceEEeeecCccccc------------------------ccc
Q 039564 250 ASQLRYMRNFLSSYFS----------FDFYGYFP--HYYYSLTMSNKGQMLSY------------------------EKI 293 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~l~~~~~~~~~~~------------------------~~~ 293 (485)
++++.........+.. .+.+..++ ..+..+.+..+...... ...
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 8865432211111110 01111111 12344444443332110 012
Q ss_pred cccccEEEcCCCcCcccCch-hhccCCCCCEEeCcCceec-----ccCCccccCCCCCCEEECCCCcCcccCcccccCCC
Q 039564 294 PYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLE-----GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT 367 (485)
Q Consensus 294 ~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 367 (485)
++.|+.|++++|.+++..+. .+..+++|+.|+|++|.++ +..+..|..+++|+.|+|++|.+++..|..|..++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 44566666666666543322 2344566777777777665 33445688899999999999999988888999999
Q ss_pred CCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 039564 368 FLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSG 402 (485)
Q Consensus 368 ~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 402 (485)
+|+.|++++|++++..|.... +.+..+++++|..
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred hhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 999999999999976655433 5666666666543
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-37 Score=321.31 Aligned_cols=378 Identities=19% Similarity=0.136 Sum_probs=283.6
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
++++++++|..+. +++++|+|++|.+++..+..|. .+++|++|++++|.++++.+. .+.....|++|++++|.+
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCC
T ss_pred cCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCcc
Confidence 3567889998776 8999999999999988887898 899999999999999987765 444445559999999999
Q ss_pred cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccc-cCCCccccCcccccCCCCccEEEccCCcc
Q 039564 81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG-ELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156 (485)
Q Consensus 81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i 156 (485)
++..|.. +++|++|++++|.+.+..+..|+++++|++|++++|.+++ .+|..+++ +++|++|++++|.+
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-------l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-------LTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-------CTTCCEEECCSSCC
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-------cCCCCEEEccCCcc
Confidence 9887765 8999999999999997777889999999999999999985 56765554 57888888888888
Q ss_pred cccCCccccCCC---------------------------CCcEEEccCCccc----------------------------
Q 039564 157 QGRIPKSLANCA---------------------------VLEIIDLGNNQII---------------------------- 181 (485)
Q Consensus 157 ~~~~~~~~~~l~---------------------------~L~~L~Ls~n~l~---------------------------- 181 (485)
++..+..|..++ +|++|++++|.+.
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred eecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 766555443322 2333333333221
Q ss_pred ----------------------------------------------------CCcChhhhCCCCCCEEEeeccccccccC
Q 039564 182 ----------------------------------------------------DTFPAWLGTLSELDILVLQSNNFHGEIK 209 (485)
Q Consensus 182 ----------------------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 209 (485)
..+| .+..+++|++|++++|.+ +.+|
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc
Confidence 0011 233334455555555554 2333
Q ss_pred Cc------------------cccCCCCCccEEEccCccCCcc--CChhhhcccccceeccccchhhhhcccccccccccc
Q 039564 210 EH------------------KMECGFPKLRIVDLSNNSFTGN--LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFY 269 (485)
Q Consensus 210 ~~------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 269 (485)
.. .....+++|++|++++|.+++. ++ ..+..+++|+.++++.+..... ... +
T Consensus 324 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~------~ 395 (606)
T 3vq2_A 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIM-SAN------F 395 (606)
T ss_dssp CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEE-CCC------C
T ss_pred cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchh-hhhccCCcccEeECCCCccccc-hhh------c
Confidence 10 0114678899999999998754 24 3478889999999887653221 111 1
Q ss_pred cCcCcccceEEeeecCccccc----ccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecc-cCCccccCCCC
Q 039564 270 GYFPHYYYSLTMSNKGQMLSY----EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG-HIPSCFGDLTK 344 (485)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~ 344 (485)
... ..+..+.+..+...... ...++.|+.|++++|.+.+..|..+..+++|++|++++|++++ .+|..++.+++
T Consensus 396 ~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 396 MGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 111 24566666666544332 2347889999999999998899999999999999999999997 47889999999
Q ss_pred CCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCC
Q 039564 345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSG 402 (485)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 402 (485)
|+.|++++|++++..|..|..+++|+.|++++|++++..|.. ..++.+..+++.+|..
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 999999999999999999999999999999999999877754 4567777788877753
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-36 Score=316.55 Aligned_cols=396 Identities=21% Similarity=0.227 Sum_probs=199.6
Q ss_pred CCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 2 SCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 2 ~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
+|.+..+|. .|+++++|++|+|++|.+.+..|..+. .+++|++|++++|.++++.+. .+..+..|++|++++|.+
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChh--hhccCCCCCEEECCCCcc
Confidence 455644443 566666666666666666655565565 566666666666666654332 233333336666666666
Q ss_pred cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccc--------------------------cCCC
Q 039564 81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG--------------------------ELPR 131 (485)
Q Consensus 81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--------------------------~~p~ 131 (485)
++..+.. +++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 5544332 5556666666666655555555555555555555555543 3332
Q ss_pred ccccCccc----c----------------cCCCCccEEEccCCcccccCCccccCCCC--CcEEEccCCcccCCcChhhh
Q 039564 132 CLGNFSDT----F----------------MNGSNLGIIDMSHNLLQGRIPKSLANCAV--LEIIDLGNNQIIDTFPAWLG 189 (485)
Q Consensus 132 ~l~~l~~~----~----------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~ 189 (485)
.++.+... + ...++|+.|++++|.+++..|..|..++. |++|++++|.+.+..+.+|+
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence 22211100 0 00123344444444444444444443322 55555555555444444455
Q ss_pred CCCCCCEEEeeccccccccCCcc-------------------------------ccCCCCCccEEEccCccCCccCChhh
Q 039564 190 TLSELDILVLQSNNFHGEIKEHK-------------------------------MECGFPKLRIVDLSNNSFTGNLPSKY 238 (485)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~-------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~ 238 (485)
.+++|++|++++|.+.+..+..+ .+..+++|++|++++|.+.+ ++...
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 348 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNM 348 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhH
Confidence 55555555555554443333222 11345666666666666663 34444
Q ss_pred hcccccceeccccchhhh-hccc-cccc------------ccccccC-----c--CcccceEEeeecCccccc----ccc
Q 039564 239 FQCWNAMKFVNASQLRYM-RNFL-SSYF------------SFDFYGY-----F--PHYYYSLTMSNKGQMLSY----EKI 293 (485)
Q Consensus 239 ~~~l~~L~~l~~~~~~~~-~~~~-~~~~------------~~~~~~~-----~--~~~~~~l~~~~~~~~~~~----~~~ 293 (485)
+..+++|+.++++++..- ..+. ..+. +.+.+.. + ...+..+++..+...... ...
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 666666666666543210 0000 0000 0000000 0 012333444443332211 122
Q ss_pred cccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec--ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCE
Q 039564 294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE--GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEF 371 (485)
Q Consensus 294 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 371 (485)
++.|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 344555555555555444555555555555555555554 355666777777777777777777666666777777777
Q ss_pred EeccCCcccccCCC---------CCCCCCCCCCCCCCCCC
Q 039564 372 FNVSHNNLTGPIPE---------ANQFPTFDSSSFDGNSG 402 (485)
Q Consensus 372 L~l~~N~l~~~~p~---------~~~~~~l~~~~~~~n~~ 402 (485)
|++++|++++..+. -..++.+..+++.+|..
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 77777777653211 12345556666666643
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=307.27 Aligned_cols=322 Identities=20% Similarity=0.219 Sum_probs=274.7
Q ss_pred CCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEE
Q 039564 18 LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHY 94 (485)
Q Consensus 18 L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L 94 (485)
-+.++.+++.++ .+|..+. +++++|+|++|.++++.+. .+.....|++|++++|.+++..|.. +++|++|
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~----~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP----TETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC----TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC-cCCCCCC----CCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 467899999998 7887654 5899999999999987664 3444455599999999999887654 7899999
Q ss_pred EccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEE
Q 039564 95 LVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIID 174 (485)
Q Consensus 95 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 174 (485)
++++|.++...+..|.++++|++|++++|.+++..|.. |..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH-------ccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 99999999766677899999999999999998666644 45568999999999999988888999999999999
Q ss_pred ccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchh
Q 039564 175 LGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR 254 (485)
Q Consensus 175 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~ 254 (485)
+++|.+++..+..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|...+.++...+.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~-------------- 222 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLY-------------- 222 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTT--------------
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccccc--------------
Confidence 99999988888889999999999999999987666666 78899999999998877666644221
Q ss_pred hhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceeccc
Q 039564 255 YMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGH 334 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 334 (485)
...|+.|++++|.+++..+..+..+++|++|+|++|++++.
T Consensus 223 ---------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 223 ---------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp ---------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 12499999999999965557899999999999999999988
Q ss_pred CCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 335 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
.+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+.. ..++.+..+.+.+||+.|+|+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 8889999999999999999999999999999999999999999999765543 3567788899999999999865
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4e-36 Score=308.61 Aligned_cols=364 Identities=19% Similarity=0.178 Sum_probs=268.9
Q ss_pred CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|.++.+ |..|+++++|++|++++|++++..|..|. .+++|++|++++|.+++..+. .+..+..|++|++++|.
T Consensus 34 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSS--WFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHH--HHTTCTTCCEEECTTCC
T ss_pred cCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHH--HhccCCCCcEEECCCCc
Confidence 46888544 67899999999999999999988888898 899999999999999987653 34444555999999999
Q ss_pred cccc-CCCC---CCCCcEEEccCCcccccCC-hhhcCCCCCCEEEcccCcccccCCCccccCc-----------------
Q 039564 80 LQGP-IPAP---PTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSGELPRCLGNFS----------------- 137 (485)
Q Consensus 80 l~~~-~~~~---~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~----------------- 137 (485)
+++. .+.. +++|++|++++|.+.+.+| ..|.++++|++|++++|.+++..|..++.+.
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence 9863 2322 8999999999998544554 6899999999999999999988887776553
Q ss_pred ccccCCCCccEEEccCCcccccC--Ccc-ccC------------------------------------------------
Q 039564 138 DTFMNGSNLGIIDMSHNLLQGRI--PKS-LAN------------------------------------------------ 166 (485)
Q Consensus 138 ~~~~~l~~L~~L~Ls~n~i~~~~--~~~-~~~------------------------------------------------ 166 (485)
..+..+++|++|++++|.+++.. +.. ...
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 269 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence 01234688888898888887531 100 001
Q ss_pred ---------------------------------------CCCCcEEEccCCcccCCcChhh-hCCCCCCEEEeecccccc
Q 039564 167 ---------------------------------------CAVLEIIDLGNNQIIDTFPAWL-GTLSELDILVLQSNNFHG 206 (485)
Q Consensus 167 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~ 206 (485)
.++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+
T Consensus 270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~ 348 (549)
T 2z81_A 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE 348 (549)
T ss_dssp CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH
T ss_pred cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc
Confidence 124555555555553 234333 567888888888888876
Q ss_pred ccCCcc-ccCCCCCccEEEccCccCCccCCh--hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeee
Q 039564 207 EIKEHK-MECGFPKLRIVDLSNNSFTGNLPS--KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283 (485)
Q Consensus 207 ~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (485)
.+|... ....+++|++|++++|.++ .++. ..+..+++|+.++++++... .+... + .....+..+++..
T Consensus 349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~------~-~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDS------C-QWPEKMRFLNLSS 419 (549)
T ss_dssp HHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC------C-CCCTTCCEEECTT
T ss_pred ccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChh------h-cccccccEEECCC
Confidence 553220 1156778888888888887 3332 44677788888877765322 11110 0 1123566777777
Q ss_pred cCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccc
Q 039564 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363 (485)
Q Consensus 284 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 363 (485)
+.........++.|+.|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|..+
T Consensus 420 N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 420 TGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp SCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred CCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 7665444445678999999999998643 57899999999999999 6776 4679999999999999999888899
Q ss_pred cCCCCCCEEeccCCcccccCC
Q 039564 364 TGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 364 ~~l~~L~~L~l~~N~l~~~~p 384 (485)
..+++|+.|++++|++++.+|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 999999999999999998766
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=304.99 Aligned_cols=370 Identities=18% Similarity=0.212 Sum_probs=269.6
Q ss_pred CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|.+..+ |..|+++++|++|+|++|.+++..|..|. .+++|++|++++|.++++.+. .+..+ ..|++|++++|.
T Consensus 60 s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~-~~~~l-~~L~~L~L~~n~ 135 (570)
T 2z63_A 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENF-PIGHL-KTLKELNVAHNL 135 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTSCCCCSTTC-SCTTC-TTCCEEECCSSC
T ss_pred CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc--CccccccccccccccccCCCc-ccccc-ccccEEecCCCc
Confidence 46788556 45899999999999999999977778898 899999999999999987654 34444 445999999999
Q ss_pred cccc-CCCC---CCCCcEEEccCCcccccCChhhcCCCCC----CEEEcccCcccccCCCcccc----------------
Q 039564 80 LQGP-IPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSL----YILDLSDNNLSGELPRCLGN---------------- 135 (485)
Q Consensus 80 l~~~-~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~---------------- 135 (485)
+++. .|.. +++|++|++++|.+++..+..++.+++| +.|++++|.+++..|..+..
T Consensus 136 l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 215 (570)
T 2z63_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215 (570)
T ss_dssp CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTT
T ss_pred cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccccc
Confidence 9873 4554 8999999999999998778888877777 78888888877544432211
Q ss_pred ----------------------------------------------------------CcccccCCCCccEEEccCCccc
Q 039564 136 ----------------------------------------------------------FSDTFMNGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 136 ----------------------------------------------------------l~~~~~~l~~L~~L~Ls~n~i~ 157 (485)
....|..+++|++|++++|.++
T Consensus 216 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 295 (570)
T 2z63_A 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295 (570)
T ss_dssp HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence 0123445677888888888777
Q ss_pred ccCCccccCCCCCcEEEccCCcccCCcChhh-------------------hCCCCCCEEEeecccccccc--CCccccCC
Q 039564 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWL-------------------GTLSELDILVLQSNNFHGEI--KEHKMECG 216 (485)
Q Consensus 158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------------~~l~~L~~L~L~~n~l~~~~--~~~~~~~~ 216 (485)
.+|+.+..+ +|++|++++|.+.......+ ..+++|++|++++|.+.+.. +..+ ..
T Consensus 296 -~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~ 371 (570)
T 2z63_A 296 -RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD--FG 371 (570)
T ss_dssp -SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH--HT
T ss_pred -hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc--cc
Confidence 466655555 55555555554432221111 45677777888777776442 3333 56
Q ss_pred CCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc---cc
Q 039564 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE---KI 293 (485)
Q Consensus 217 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~ 293 (485)
+++|++|++++|.+. .++.. +..+++|+.+++.++........ ..+... ..+..+++..+....... ..
T Consensus 372 ~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 372 TTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----SVFLSL-RNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp CSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTS-----CTTTTC-TTCCEEECTTSCCEECCTTTTTT
T ss_pred cCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccch-----hhhhcC-CCCCEEeCcCCcccccchhhhhc
Confidence 677777777777776 34433 66677777777665432221100 001111 234555555554433222 33
Q ss_pred cccccEEEcCCCcCc-ccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEE
Q 039564 294 PYILTAVILSSNGFH-GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF 372 (485)
Q Consensus 294 ~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 372 (485)
++.|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..|..+++|+.|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 678999999999997 5788999999999999999999998889999999999999999999998888889999999999
Q ss_pred eccCCcccccCCCC
Q 039564 373 NVSHNNLTGPIPEA 386 (485)
Q Consensus 373 ~l~~N~l~~~~p~~ 386 (485)
++++|++++.+|..
T Consensus 524 ~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 524 WLHTNPWDCSCPRI 537 (570)
T ss_dssp ECCSSCBCCCTTTT
T ss_pred EecCCcccCCCcch
Confidence 99999999988764
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-36 Score=303.71 Aligned_cols=338 Identities=20% Similarity=0.192 Sum_probs=266.1
Q ss_pred CCCCCCCCC-hhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|.+..+| ..|+++++|++|+|++|++++..|..|. .+++|++|++++|.++++ |. . .+ ..|++|++++|.
T Consensus 29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l-p~--~-~l-~~L~~L~L~~N~ 101 (520)
T 2z7x_B 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSHNKLVKI-SC--H-PT-VNLKHLDLSFNA 101 (520)
T ss_dssp CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECCSSCCCEE-EC--C-CC-CCCSEEECCSSC
T ss_pred CCCcccccChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecCCCceeec-Cc--c-cc-CCccEEeccCCc
Confidence 578896565 6999999999999999999988888998 899999999999999965 33 2 44 445999999999
Q ss_pred cccc-CCCC---CCCCcEEEccCCcccccCChhhcCCCCC--CEEEcccCcc--cccCCCccccCc--------------
Q 039564 80 LQGP-IPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSL--YILDLSDNNL--SGELPRCLGNFS-------------- 137 (485)
Q Consensus 80 l~~~-~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-------------- 137 (485)
+++. .|.. +++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..++.+.
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred cccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 9874 4443 8999999999999986 457778888 9999999998 667776665532
Q ss_pred -----cc------------------------------ccC---------------------------CCCccEEEccCCc
Q 039564 138 -----DT------------------------------FMN---------------------------GSNLGIIDMSHNL 155 (485)
Q Consensus 138 -----~~------------------------------~~~---------------------------l~~L~~L~Ls~n~ 155 (485)
.. +.. .++|++|++++|.
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 00 111 1367888888888
Q ss_pred ccccCCccc-----cCCCCCcEEEccCCcccCCcC-hh-------------------------hhCCCCCCEEEeecccc
Q 039564 156 LQGRIPKSL-----ANCAVLEIIDLGNNQIIDTFP-AW-------------------------LGTLSELDILVLQSNNF 204 (485)
Q Consensus 156 i~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~-------------------------~~~l~~L~~L~L~~n~l 204 (485)
+++.+|..+ ..+++|+.+++++|.+ .+| .. +..+++|++|++++|.+
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 888888887 6777777777666665 222 11 16889999999999999
Q ss_pred ccccCCccccCCCCCccEEEccCccCCc--cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEee
Q 039564 205 HGEIKEHKMECGFPKLRIVDLSNNSFTG--NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS 282 (485)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (485)
.+.+|..+ ..+++|++|++++|.+.+ .+| ..+..+++|+.++++++.....+...
T Consensus 337 ~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~-------------------- 393 (520)
T 2z7x_B 337 TDTVFENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKG-------------------- 393 (520)
T ss_dssp CTTTTTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGC--------------------
T ss_pred Chhhhhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccc--------------------
Confidence 98888877 789999999999999984 222 34778888988888765433211100
Q ss_pred ecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCccc
Q 039564 283 NKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ 362 (485)
Q Consensus 283 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 362 (485)
....++.|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus 394 -------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 394 -------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp -------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred -------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 012256799999999999888877664 79999999999999 78888889999999999999999 56654
Q ss_pred -ccCCCCCCEEeccCCcccccCC
Q 039564 363 -LTGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 363 -~~~l~~L~~L~l~~N~l~~~~p 384 (485)
+..+++|+.|++++|++++..+
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhccCCcccEEECcCCCCcccCC
Confidence 8999999999999999997554
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.8e-36 Score=283.85 Aligned_cols=259 Identities=32% Similarity=0.494 Sum_probs=233.1
Q ss_pred CCCcEEEccCCcccc--cCChhhcCCCCCCEEEccc-CcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564 89 TKTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSD-NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165 (485)
Q Consensus 89 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 165 (485)
.++++|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..++. +++|++|++++|.+++.+|..|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-------l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-------LTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-------CTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-------CCCCCEEECcCCeeCCcCCHHHh
Confidence 578889999999988 8899999999999999995 8898888876655 48999999999999999999999
Q ss_pred CCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCC-CccEEEccCccCCccCChhhhccccc
Q 039564 166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFP-KLRIVDLSNNSFTGNLPSKYFQCWNA 244 (485)
Q Consensus 166 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~ 244 (485)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+.+.+|..+ ..++ +|++|++++|.+.+.+|..+ ..
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~--- 196 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN--- 196 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---
Confidence 99999999999999998999999999999999999999998888887 6777 99999999999987777542 11
Q ss_pred ceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEE
Q 039564 245 MKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVL 324 (485)
Q Consensus 245 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 324 (485)
+. |+.|++++|.+.+..|..+..+++|++|
T Consensus 197 -------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 197 -------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp -------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred -------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 12 8899999999999999999999999999
Q ss_pred eCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564 325 SLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404 (485)
Q Consensus 325 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc 404 (485)
++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|....++.+..+.+.+||++|
T Consensus 227 ~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred ECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 9999999976666 888999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCCCCCC
Q 039564 405 GKPLFKEC 412 (485)
Q Consensus 405 ~~~~~~~c 412 (485)
+.|+. .|
T Consensus 306 ~~p~~-~C 312 (313)
T 1ogq_A 306 GSPLP-AC 312 (313)
T ss_dssp STTSS-CC
T ss_pred CCCCC-CC
Confidence 98875 46
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-35 Score=302.91 Aligned_cols=338 Identities=18% Similarity=0.182 Sum_probs=260.5
Q ss_pred CCCCCCCCC-hhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|.+..+| ..|+++++|++|+|++|.+++..|+.|. .+++|++|++++|.++.+ |. . .+ ..|++|++++|.
T Consensus 60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l-p~--~-~l-~~L~~L~Ls~N~ 132 (562)
T 3a79_B 60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSHNRLQNI-SC--C-PM-ASLRHLDLSFND 132 (562)
T ss_dssp CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECTTSCCCEE-CS--C-CC-TTCSEEECCSSC
T ss_pred CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEECCCCcCCcc-Cc--c-cc-ccCCEEECCCCC
Confidence 578896666 6999999999999999999988888898 899999999999999965 33 2 44 445999999999
Q ss_pred ccccC-CCC---CCCCcEEEccCCcccccCChhhcCCCCC--CEEEcccCcc--cccCCCccccCc--------------
Q 039564 80 LQGPI-PAP---PTKTRHYLVSKNNLTGEIPSWICNLSSL--YILDLSDNNL--SGELPRCLGNFS-------------- 137 (485)
Q Consensus 80 l~~~~-~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-------------- 137 (485)
+++.. |.. +++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred ccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 98743 333 89999999999999853 45556666 9999999998 767776665532
Q ss_pred -----cccc-------------------------------------------------------CCCCccEEEccCCccc
Q 039564 138 -----DTFM-------------------------------------------------------NGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 138 -----~~~~-------------------------------------------------------~l~~L~~L~Ls~n~i~ 157 (485)
..+. ..++|++|++++|.++
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence 0000 1127888888888888
Q ss_pred ccCCccc-----cCCC--------------------------CCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccc
Q 039564 158 GRIPKSL-----ANCA--------------------------VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG 206 (485)
Q Consensus 158 ~~~~~~~-----~~l~--------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 206 (485)
+.+|..+ ..++ +|++|++++|.+..... ...+++|++|++++|.+.+
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCT
T ss_pred ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCcccc
Confidence 8888766 3333 36666666666543221 2678999999999999998
Q ss_pred ccCCccccCCCCCccEEEccCccCCccCCh--hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeec
Q 039564 207 EIKEHKMECGFPKLRIVDLSNNSFTGNLPS--KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNK 284 (485)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (485)
.+|..+ ..+++|++|++++|.++ .++. ..+..+++|+.++++++........
T Consensus 368 ~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----------------------- 421 (562)
T 3a79_B 368 SVFQGC--STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYD----------------------- 421 (562)
T ss_dssp TTTTTC--CSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----------------------
T ss_pred chhhhh--cccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccCh-----------------------
Confidence 788777 78899999999999998 4443 3467788888888776543221100
Q ss_pred CcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCccc-c
Q 039564 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ-L 363 (485)
Q Consensus 285 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~ 363 (485)
.....++.|+.|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +
T Consensus 422 ----~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 493 (562)
T 3a79_B 422 ----RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF 493 (562)
T ss_dssp ----CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTST
T ss_pred ----hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHH
Confidence 0111256799999999999887776554 79999999999999 77777779999999999999999 56655 8
Q ss_pred cCCCCCCEEeccCCcccccCC
Q 039564 364 TGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 364 ~~l~~L~~L~l~~N~l~~~~p 384 (485)
..+++|+.+++++|+++|.++
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCHH
T ss_pred hcCCCCCEEEecCCCcCCCcc
Confidence 999999999999999998655
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.7e-35 Score=289.79 Aligned_cols=319 Identities=25% Similarity=0.260 Sum_probs=150.7
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCC-------------cEEEccCCcCcCcCCCCCCCCCC
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNF-------------SYLNLSKNSLTGFDQHPSVFPWS 67 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~~~~ 67 (485)
++|+++++|++++++++|++|++++|.+.|.+|..++ .+++| ++|++++|.++++... .
T Consensus 19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~------~ 90 (454)
T 1jl5_A 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL------P 90 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSC--CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC------C
T ss_pred ccCchhhCChhHhcccchhhhhccCCcccccCCcccc--cchhcchhhhhhhhccCCCEEEecCCccccCCCC------c
Confidence 3577889999999999999999999999888888887 66543 7777777777664221 1
Q ss_pred CCccEEEcCCCcccccCCCCCC--------------------CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccc
Q 039564 68 SGEFTLDLSSNFLQGPIPAPPT--------------------KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127 (485)
Q Consensus 68 ~lL~~L~l~~n~l~~~~~~~~~--------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 127 (485)
..|++|++++|.+++ +|..++ +|++|++++|.+++ +| .|+++++|++|++++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~- 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK- 166 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-
Confidence 233666666665554 333344 44555555555443 34 3455555555555555554
Q ss_pred cCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc
Q 039564 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE 207 (485)
Q Consensus 128 ~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 207 (485)
.+|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++. |.. .++|++|++++|.+. .
T Consensus 167 ~lp~~~----------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 167 KLPDLP----------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp CCCCCC----------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-S
T ss_pred ccCCCc----------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-c
Confidence 233211 345555555555543 33 345555555555555555431 211 134555555555554 3
Q ss_pred cCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcc
Q 039564 208 IKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQM 287 (485)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (485)
+|. + ..+++|++|++++|.++ .+|.. ..+|+.++++++... .++..+..+..+++..+...
T Consensus 230 lp~-~--~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~-----------~l~~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 230 LPE-L--QNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLT-----------DLPELPQSLTFLDVSENIFS 290 (454)
T ss_dssp CCC-C--TTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCS-----------CCCCCCTTCCEEECCSSCCS
T ss_pred ccc-c--CCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCccc-----------ccCcccCcCCEEECcCCccC
Confidence 442 2 44555555555555554 23321 234444444332211 11112233444444444332
Q ss_pred cccccccccccEEEcCCCcCcccCchhhccC-CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCC
Q 039564 288 LSYEKIPYILTAVILSSNGFHGEIPTSIANL-KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL 366 (485)
Q Consensus 288 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 366 (485)
. ....++.|+.|++++|.+++ ++ .+ ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+
T Consensus 291 ~-l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l 356 (454)
T 1jl5_A 291 G-LSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LP 356 (454)
T ss_dssp E-ESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CC
T ss_pred c-ccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hh
Confidence 2 11223445555555555542 11 12 355555665555553 3332 355555555555555 3443 24
Q ss_pred CCCCEEeccCCcccc
Q 039564 367 TFLEFFNVSHNNLTG 381 (485)
Q Consensus 367 ~~L~~L~l~~N~l~~ 381 (485)
++|+.|++++|++++
T Consensus 357 ~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 357 QNLKQLHVEYNPLRE 371 (454)
T ss_dssp TTCCEEECCSSCCSS
T ss_pred hhccEEECCCCCCCc
Confidence 555555555555555
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.7e-34 Score=279.71 Aligned_cols=309 Identities=19% Similarity=0.214 Sum_probs=216.5
Q ss_pred CCCCCCEEECCCCcCCCCCCcc-cccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CC
Q 039564 14 QQKHLKALDLSSNKLHGNIPKW-LLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PT 89 (485)
Q Consensus 14 ~l~~L~~L~Ls~n~~~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~ 89 (485)
.++++++|++++|.+. .+|.. +. .+++|++|++++|.++++.+. .+.....|++|++++|.+++..+.. ++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLD--SFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHH--HCCCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchh-hCChhHhc--ccccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 3688999999999988 45544 56 789999999999999877654 3444445599999999998877654 78
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564 90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 169 (485)
+|++|++++|.++...+..|.++++|++|++++|.+++..|.. |..+++|++|++++|.+++. .+..+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-------FQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-------TSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-------ccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 8999999999998544555788999999999999988554533 44568999999999998854 3566788
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 249 (485)
|++|++++|.+.+. ...++|++|++++|.+... +.. ..++|+.|++++|.+++ .+ .+..++
T Consensus 188 L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~----~~~~L~~L~l~~n~l~~-~~--~l~~l~------ 248 (390)
T 3o6n_A 188 LFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP----VNVELTILKLQHNNLTD-TA--WLLNYP------ 248 (390)
T ss_dssp CSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC----CCSSCCEEECCSSCCCC-CG--GGGGCT------
T ss_pred cceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc----ccccccEEECCCCCCcc-cH--HHcCCC------
Confidence 99999999987542 3456899999999988743 433 24789999999998874 22 233333
Q ss_pred ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 329 (485)
.|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 249 ----------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 249 ----------------------------------------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp ----------------------------------------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred ----------------------------------------------CccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 3666666666666555666666666666666666
Q ss_pred eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK 406 (485)
Q Consensus 330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 406 (485)
++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++.. + ...++.+..+++.+||+.|++
T Consensus 283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 6663 3444555666666666666666 4455555666666666666666543 2 234455556666666666654
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.3e-34 Score=293.50 Aligned_cols=332 Identities=18% Similarity=0.173 Sum_probs=204.2
Q ss_pred CCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCC
Q 039564 15 QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKT 91 (485)
Q Consensus 15 l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L 91 (485)
+.+++.|++++|.+....+..+. .+++|++|++++|.++++.+. .+..+..|++|++++|.+++..+.. +++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 46677777777777643333344 567777777777777765543 2333333477777777777665543 6677
Q ss_pred cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCc
Q 039564 92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLE 171 (485)
Q Consensus 92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 171 (485)
++|++++|.+++..+..|+++++|++|++++|.+++..|.. |..+++|++|++++|.+++.. +..+++|+
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~ 195 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-------FQATTSLQNLQLSSNRLTHVD---LSLIPSLF 195 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-------TTTCTTCCEEECTTSCCSBCC---GGGCTTCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-------hhcCCcCcEEECcCCCCCCcC---hhhhhhhh
Confidence 77777777777544445677777777777777776544433 334467777777777776432 44566677
Q ss_pred EEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecccc
Q 039564 172 IIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251 (485)
Q Consensus 172 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~ 251 (485)
+|++++|.+.+ +...++|+.|++++|.+... +... .++|+.|++++|.+++. ..+..+++|+.++++
T Consensus 196 ~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~----~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 196 HANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV----NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLS 262 (597)
T ss_dssp EEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC----CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECC
T ss_pred hhhcccCcccc-----ccCCchhheeeccCCccccc-cccc----CCCCCEEECCCCCCCCC---hhhccCCCCCEEECC
Confidence 77777776643 23345677777777776532 2222 25677777777776642 234455555554444
Q ss_pred chhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCcee
Q 039564 252 QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNL 331 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 331 (485)
++....... .....++.|+.|+|++|.+++ +|..+..+++|+.|+|++|++
T Consensus 263 ~N~l~~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 263 YNELEKIMY----------------------------HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp SSCCCEEES----------------------------GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred CCccCCCCH----------------------------HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 322111100 001114457888888888774 566666778888888888888
Q ss_pred cccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 332 EGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407 (485)
Q Consensus 332 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 407 (485)
+ .+|..+..+++|+.|++++|.+++. | +..+++|+.|++++|++.+.... ..+..+....+.+++..|+.+
T Consensus 314 ~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 314 L-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred C-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 7 5666777788888888888888743 2 56677888888888887764321 123344445566777777653
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.9e-34 Score=277.98 Aligned_cols=322 Identities=23% Similarity=0.192 Sum_probs=260.9
Q ss_pred CCCCCCCChh-hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 2 SCNLFEFPNF-LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 2 ~n~l~~~p~~-~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
+|.++.+|.. ++.+++|++|++++|.+.+..+..|. .+++|++|++++|.+++..+. .+.....|++|++++|.+
T Consensus 54 ~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCC
T ss_pred CCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHH--HhcCCCCCCEEECCCCcc
Confidence 4567778874 78999999999999999977777888 899999999999999987664 444455559999999999
Q ss_pred cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564 81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157 (485)
Q Consensus 81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~ 157 (485)
+...+.. +++|++|++++|.+.+..+..|.++++|++|++++|.+++ ++ +..+++|+.|++++|.++
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---------~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---------LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---------GGGCTTCSEEECCSSCCS
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---------cccccccceeeccccccc
Confidence 9766543 8999999999999998888889999999999999999984 33 233589999999999987
Q ss_pred ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237 (485)
Q Consensus 158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 237 (485)
+. ...++|++|++++|.+..... ...++|++|++++|.+.+. ..+ ..+++|++|++++|.+.+..|..
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l--~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL--LNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHH--cCCCCccEEECCCCcCCCcChhH
Confidence 42 344689999999999976533 2358999999999999853 334 67899999999999998554433
Q ss_pred hhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhcc
Q 039564 238 YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIAN 317 (485)
Q Consensus 238 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 317 (485)
+.. ++.|+.|++++|+++ .+|..+..
T Consensus 268 -~~~----------------------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~ 293 (390)
T 3o6n_A 268 -FVK----------------------------------------------------MQRLERLYISNNRLV-ALNLYGQP 293 (390)
T ss_dssp -GTT----------------------------------------------------CSSCCEEECCSSCCC-EEECSSSC
T ss_pred -ccc----------------------------------------------------cccCCEEECCCCcCc-ccCcccCC
Confidence 222 344899999999998 46777788
Q ss_pred CCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCC
Q 039564 318 LKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSF 397 (485)
Q Consensus 318 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~ 397 (485)
+++|++|++++|+++ .+|..+..+++|+.|++++|.++.. + +..+++|+.|++++|++.+.... ..+..+....+
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~ 368 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAV 368 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTB
T ss_pred CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcc
Confidence 999999999999998 6777788999999999999999854 3 67889999999999999874221 22334455567
Q ss_pred CCCCCCCCCCC
Q 039564 398 DGNSGLCGKPL 408 (485)
Q Consensus 398 ~~n~~lc~~~~ 408 (485)
.+++..|.++.
T Consensus 369 ~~~~~~c~~~~ 379 (390)
T 3o6n_A 369 DDADQHCKIDY 379 (390)
T ss_dssp CCCCSCCCTTC
T ss_pred cccCceecccc
Confidence 77888887643
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.3e-33 Score=279.15 Aligned_cols=333 Identities=24% Similarity=0.291 Sum_probs=200.7
Q ss_pred CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564 2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ 81 (485)
Q Consensus 2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~ 81 (485)
+|.+..+|. +..+++|++|++++|.+.+. |. +. .+++|++|++++|.+++..+ +..+.. |++|++++|.++
T Consensus 55 ~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~--~l~~L~~L~l~~n~l~~~~~---~~~l~~-L~~L~L~~n~l~ 125 (466)
T 1o6v_A 55 RLGIKSIDG-VEYLNNLTQINFSNNQLTDI-TP-LK--NLTKLVDILMNNNQIADITP---LANLTN-LTGLTLFNNQIT 125 (466)
T ss_dssp SSCCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GT--TCTTCCEEECCSSCCCCCGG---GTTCTT-CCEEECCSSCCC
T ss_pred CCCCccCcc-hhhhcCCCEEECCCCccCCc-hh-hh--ccccCCEEECCCCccccChh---hcCCCC-CCEEECCCCCCC
Confidence 455555653 66677777777777777643 33 55 67777777777777766532 333333 377777777776
Q ss_pred ccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 82 GPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 82 ~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
+..+-. +++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+ + ..+..+++|++|++++|.+++.
T Consensus 126 ~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~--------~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 126 DIDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-L--------KPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CCGGGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-C--------GGGTTCTTCCEEECCSSCCCCC-
T ss_pred CChHHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-c--------hhhccCCCCCEEECcCCcCCCC-
Confidence 554322 6777777777777663 33 36667777777765 33331 1 1244567788888888877643
Q ss_pred CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564 161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240 (485)
Q Consensus 161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 240 (485)
..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+ ++ .+ ..+++|+.|++++|.+.+..+ +.
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l--~~l~~L~~L~l~~n~l~~~~~---~~ 262 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TL--ASLTNLTDLDLANNQISNLAP---LS 262 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GG--GGCTTCSEEECCSSCCCCCGG---GT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hh--hcCCCCCEEECCCCccccchh---hh
Confidence 346777788888888887766554 5667778888888877763 22 23 467778888888877764332 56
Q ss_pred ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564 241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG 320 (485)
Q Consensus 241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 320 (485)
.+++|+.++++++...... ....++.|+.|++++|.+.+..+ +..+++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~------------------------------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNIS------------------------------PLAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp TCTTCSEEECCSSCCCCCG------------------------------GGTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred cCCCCCEEECCCCccCccc------------------------------cccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 6667777666554321110 01123446666666666654332 555666
Q ss_pred CCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCC
Q 039564 321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGN 400 (485)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n 400 (485)
|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| ...++.+..+.+.+|
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence 6666666666664443 45566666666666666643 345566666666666666665554 344455555555555
Q ss_pred CCC
Q 039564 401 SGL 403 (485)
Q Consensus 401 ~~l 403 (485)
++.
T Consensus 386 ~~~ 388 (466)
T 1o6v_A 386 AWT 388 (466)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-32 Score=265.90 Aligned_cols=306 Identities=22% Similarity=0.300 Sum_probs=202.4
Q ss_pred hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC-CCCC
Q 039564 11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP-APPT 89 (485)
Q Consensus 11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~-~~~~ 89 (485)
.+..+++|++|++++|.+. .+|. +. .+++|++|++++|.++++.+ +.. ...|++|++++|.+++... ..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~--~~~~L~~L~l~~n~i~~~~~---~~~-l~~L~~L~L~~n~i~~~~~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-IE--YLTNLEYLNLNGNQITDISP---LSN-LVKLTNLYIGTNKITDISALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-GG--GCTTCCEEECCSSCCCCCGG---GTT-CTTCCEEECCSSCCCCCGGGTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh-hh--hcCCccEEEccCCccccchh---hhc-CCcCCEEEccCCcccCchHHcCCC
Confidence 4457889999999999988 4554 66 78999999999999987632 344 4445999999999886432 2288
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564 90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 169 (485)
+|++|++++|.+.+ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++
T Consensus 111 ~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 111 NLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS--------PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp TCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG--------GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred cCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc--------chhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 99999999999985 443 8899999999999996653433 24556899999999999885443 888999
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 249 (485)
|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ + ..+++|+.|++++|.+. .++. +..+++|+.++
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLE 249 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h--hcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEE
Confidence 9999999999876544 7889999999999999875443 3 67889999999999987 3433 44444444444
Q ss_pred ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 329 (485)
++++..... .....++.|+.|++++|.+++. ..+..+++|++|++++|
T Consensus 250 l~~n~l~~~------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 250 IGTNQISDI------------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCSSCCCCC------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCCccCCC------------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 333211000 0001123355555555555432 23444555555555555
Q ss_pred eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564 330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379 (485)
Q Consensus 330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 379 (485)
++++..|..+..+++|+.|++++|.+++..| +..+++|+.|++++|++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 5554444445555555555555555553333 44455555555555544
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=289.83 Aligned_cols=310 Identities=18% Similarity=0.170 Sum_probs=256.5
Q ss_pred CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCC
Q 039564 40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLY 116 (485)
Q Consensus 40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 116 (485)
.+.+++.|++++|.++.+.+. ++.....|++|++++|.+++..+.. +++|++|++++|.+++..|..|+++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTH--HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHH--HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 468899999999999886543 5555555699999999999887644 89999999999999988888899999999
Q ss_pred EEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCE
Q 039564 117 ILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDI 196 (485)
Q Consensus 117 ~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 196 (485)
+|+|++|.++ .+|. ..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.
T Consensus 127 ~L~L~~n~l~-~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 127 VLVLERNDLS-SLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 196 (597)
T ss_dssp EEECCSSCCC-CCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred EEEeeCCCCC-CCCH------HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence 9999999998 5664 33456799999999999999888889999999999999999997753 567899999
Q ss_pred EEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCccc
Q 039564 197 LVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYY 276 (485)
Q Consensus 197 L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
|++++|.+.+. ...++|+.|++++|.+. .++... ..+|+.++++++....
T Consensus 197 L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~------------------- 246 (597)
T 3oja_B 197 ANVSYNLLSTL-------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD------------------- 246 (597)
T ss_dssp EECCSSCCSEE-------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC-------------------
T ss_pred hhcccCccccc-------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC-------------------
Confidence 99999988742 23467999999999987 444322 2455665555432111
Q ss_pred ceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCc
Q 039564 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356 (485)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 356 (485)
......++.|+.|++++|.+.+..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++
T Consensus 247 -----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 247 -----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp -----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred -----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 0112236679999999999999999999999999999999999995 5777788999999999999999
Q ss_pred ccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK 406 (485)
Q Consensus 357 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 406 (485)
.+|..+..+++|+.|++++|.+++.. ...++.+..+++.+||+.|+|
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 68888899999999999999998653 345678888999999999976
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-32 Score=273.59 Aligned_cols=314 Identities=23% Similarity=0.264 Sum_probs=256.2
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
++|.+..+|. ++++++|++|++++|.+.+. +. +. .+++|++|++++|.+++..+ +..+.. |++|++++|.+
T Consensus 76 s~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~--~l~~L~~L~L~~n~l~~~~~---~~~l~~-L~~L~l~~n~l 146 (466)
T 1o6v_A 76 SNNQLTDITP-LKNLTKLVDILMNNNQIADI-TP-LA--NLTNLTGLTLFNNQITDIDP---LKNLTN-LNRLELSSNTI 146 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GT--TCTTCCEEECCSSCCCCCGG---GTTCTT-CSEEEEEEEEE
T ss_pred CCCccCCchh-hhccccCCEEECCCCccccC-hh-hc--CCCCCCEEECCCCCCCCChH---HcCCCC-CCEEECCCCcc
Confidence 4688877877 99999999999999999954 43 77 89999999999999998632 444444 59999999999
Q ss_pred cccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc
Q 039564 81 QGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR 159 (485)
Q Consensus 81 ~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~ 159 (485)
++...- .+++|++|+++ |.+.+. + .+.++++|++|++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus 147 ~~~~~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 147 SDISALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSD-IS--------VLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp CCCGGGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCC-CG--------GGGGCTTCSEEECCSSCCCCC
T ss_pred CCChhhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCC-Ch--------hhccCCCCCEEEecCCccccc
Confidence 875332 28999999997 455533 2 38899999999999999873 32 245569999999999999966
Q ss_pred CCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhh
Q 039564 160 IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF 239 (485)
Q Consensus 160 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 239 (485)
.| +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ + ..+++|+.|++++|.+.+ ++. +
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~-~~~--~ 283 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L--SGLTKLTELKLGANQISN-ISP--L 283 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCSSCCCC-CGG--G
T ss_pred cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h--hcCCCCCEEECCCCccCc-ccc--c
Confidence 55 77899999999999999764 468899999999999999986544 4 678999999999999984 443 6
Q ss_pred cccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCC
Q 039564 240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLK 319 (485)
Q Consensus 240 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 319 (485)
..+++|+.++++++..... .....++.|+.|++++|.+.+..| +..++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~------------------------------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDI------------------------------SPISNLKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp TTCTTCSEEECCSSCCSCC------------------------------GGGGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred cCCCccCeEEcCCCcccCc------------------------------hhhcCCCCCCEEECcCCcCCCchh--hccCc
Confidence 7788888888776432211 001235679999999999997665 78999
Q ss_pred CCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564 320 GLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 320 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
+|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999999999999865 468899999999999999998776 89999999999999999973
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.4e-32 Score=259.42 Aligned_cols=287 Identities=21% Similarity=0.222 Sum_probs=222.0
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCc
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTR 92 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~ 92 (485)
.+++.++++++.+. .+|..+. ++|++|++++|.++++.+. .+..+ ..|++|++++|.+++..|.. +++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~----~~l~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP----PDTALLDLQNNKITEIKDG-DFKNL-KNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC----TTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCeEEEecCCCcc-ccCccCC----CCCeEEECCCCcCCEeChh-hhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 38899999999888 6776554 5889999999999887654 34444 44599999999998876654 78899
Q ss_pred EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc--cCCccccCCCCC
Q 039564 93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG--RIPKSLANCAVL 170 (485)
Q Consensus 93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L 170 (485)
+|++++|.++ .+|..+. ++|++|++++|.+++..+ ..|..+++|++|++++|.+.. ..+..+..+++|
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK-------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH-------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH-------hHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 9999999988 5665553 789999999998884433 334556899999999999864 667788899999
Q ss_pred cEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccc
Q 039564 171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNA 250 (485)
Q Consensus 171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~ 250 (485)
++|++++|.++.. |..+ .++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+ ..+..
T Consensus 174 ~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~~~--------- 238 (330)
T 1xku_A 174 SYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN-GSLAN--------- 238 (330)
T ss_dssp CEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECT-TTGGG---------
T ss_pred CEEECCCCccccC-Cccc--cccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeCh-hhccC---------
Confidence 9999999998654 4333 2789999999999987666666 788999999999999884333 22222
Q ss_pred cchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCce
Q 039564 251 SQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN 330 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 330 (485)
++.|+.|++++|.++ .+|..+..+++|++|++++|+
T Consensus 239 -------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 239 -------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp -------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred -------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 334888999999888 788888899999999999999
Q ss_pred ecccCCccccC------CCCCCEEECCCCcCcc--cCcccccCCCCCCEEeccCCc
Q 039564 331 LEGHIPSCFGD------LTKLESLDLSNNWFSG--QIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 331 l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~ 378 (485)
+++..+..|.. .+.|+.|++++|.+.. ..|..|..++.++.+++++|+
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 98776666643 3778899999998864 567788889999999999885
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-32 Score=263.95 Aligned_cols=303 Identities=19% Similarity=0.255 Sum_probs=246.1
Q ss_pred CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 039564 40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYIL 118 (485)
Q Consensus 40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 118 (485)
.+++|++|++++|.++.+. .+..+ +.|++|++++|.+++..+- .+++|++|++++|.++. ++ .|.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~---~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ---GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT---TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccch---hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 6789999999999998752 34444 4459999999999876542 38999999999999985 44 69999999999
Q ss_pred EcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEE
Q 039564 119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILV 198 (485)
Q Consensus 119 ~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 198 (485)
++++|.+. .+|. +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 116 ~l~~n~i~-~~~~--------~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 116 YLNEDNIS-DISP--------LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp ECTTSCCC-CCGG--------GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred ECcCCccc-Cchh--------hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 99999988 4432 456699999999999766444 458999999999999999976654 88999999999
Q ss_pred eeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccce
Q 039564 199 LQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYS 278 (485)
Q Consensus 199 L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (485)
+++|.+.+. +. + ..+++|+.+++++|.+.+ ++. +..+++|+.++++++.....
T Consensus 184 l~~n~l~~~-~~-~--~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~-------------------- 236 (347)
T 4fmz_A 184 LNYNQIEDI-SP-L--ASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDL-------------------- 236 (347)
T ss_dssp CTTSCCCCC-GG-G--GGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC--------------------
T ss_pred ccCCccccc-cc-c--cCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCC--------------------
Confidence 999998844 33 4 678999999999999984 333 67788888887776432211
Q ss_pred EEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCccc
Q 039564 279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ 358 (485)
Q Consensus 279 l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 358 (485)
.....++.|+.|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 237 ----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 237 ----------SPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp ----------GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred ----------cchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence 0012356799999999999853 4688999999999999999854 4588999999999999999988
Q ss_pred CcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 039564 359 IPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSG 402 (485)
Q Consensus 359 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 402 (485)
.|..+..+++|+.|++++|++++..| ...++.+..+++.+|+.
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred ChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 89999999999999999999998766 45677888888888863
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-32 Score=270.54 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=127.8
Q ss_pred ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCC
Q 039564 9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPP 88 (485)
Q Consensus 9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~ 88 (485)
+..++++++|++|++++|.+++ +| .+. .+++|++|++++|.++++ .+..+.. |++|++++|.+++.....+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~--~l~~L~~L~Ls~n~l~~~----~~~~l~~-L~~L~Ls~N~l~~~~~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIE--KLTGLTKLICTSNNITTL----DLSQNTN-LTYLACDSNKLTNLDVTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGG--GCTTCSEEECCSSCCSCC----CCTTCTT-CSEEECCSSCCSCCCCTTC
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhc--ccCCCCEEEccCCcCCeE----ccccCCC-CCEEECcCCCCceeecCCC
Confidence 4466677777777777777774 35 455 677777777777777764 1333333 3777777777776543337
Q ss_pred CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCC
Q 039564 89 TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168 (485)
Q Consensus 89 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 168 (485)
++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| +..+++|++|++++|...+.+ .+..++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---------l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---------VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---------CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---------cccCCcCCEEECCCCCccccc--ccccCC
Confidence 777777777777775 33 6677777777777777764 32 223456666666666443333 355566
Q ss_pred CCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceec
Q 039564 169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248 (485)
Q Consensus 169 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l 248 (485)
+|++|++++|.+++. | +..+++|+.|++++|.+.+. .+ ..+++|+.|++++|.+++ +| +..+++|+.+
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l--~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L 238 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DL--NQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYF 238 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CC--TTCTTCSEEECCSSCCSC-CC---CTTCTTCSEE
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---cc--ccCCCCCEEECcCCcccc-cC---ccccCCCCEE
Confidence 666666666666553 2 55566666666666666543 12 455666666666666663 44 4455555555
Q ss_pred cccch
Q 039564 249 NASQL 253 (485)
Q Consensus 249 ~~~~~ 253 (485)
+++++
T Consensus 239 ~l~~N 243 (457)
T 3bz5_A 239 DCSVN 243 (457)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 55543
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.9e-32 Score=260.54 Aligned_cols=298 Identities=22% Similarity=0.270 Sum_probs=232.7
Q ss_pred CCCCCChhhhCC------CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCC
Q 039564 4 NLFEFPNFLKQQ------KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77 (485)
Q Consensus 4 ~l~~~p~~~~~l------~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~ 77 (485)
.+.++|..+... .+++.++++++.+. .+|..+. ++|++|++++|.++++.+. .+..+. .|++|++++
T Consensus 15 ~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~----~~l~~L~l~~n~i~~~~~~-~~~~l~-~L~~L~L~~ 87 (332)
T 2ft3_A 15 DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS----PDTTLLDLQNNDISELRKD-DFKGLQ-HLYALVLVN 87 (332)
T ss_dssp ----------CCCCSSCEEETTEEECCSSCCS-SCCSCCC----TTCCEEECCSSCCCEECTT-TTTTCT-TCCEEECCS
T ss_pred ccccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC----CCCeEEECCCCcCCccCHh-HhhCCC-CCcEEECCC
Confidence 456778765543 37999999999998 7887654 6899999999999987664 344444 459999999
Q ss_pred CcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564 78 NFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN 154 (485)
Q Consensus 78 n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n 154 (485)
|.+++..|.. +++|++|++++|.++ .+|..+. ++|++|++++|.++ .+|. ..|..+++|++|++++|
T Consensus 88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~------~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 88 NKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPK------GVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCS------GGGSSCSSCCEEECCSC
T ss_pred CccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCH------hHhCCCccCCEEECCCC
Confidence 9999876654 899999999999998 5666554 89999999999998 4443 33556799999999999
Q ss_pred cccc--cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc
Q 039564 155 LLQG--RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232 (485)
Q Consensus 155 ~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 232 (485)
.++. ..+..+..+ +|++|++++|.+++. |..+. ++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+
T Consensus 158 ~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCC
T ss_pred ccccCCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCc
Confidence 9963 677888888 999999999999764 44332 799999999999997766777 789999999999999984
Q ss_pred cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCc
Q 039564 233 NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP 312 (485)
Q Consensus 233 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 312 (485)
++...+.. ++.|+.|++++|+++ .+|
T Consensus 232 -~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 232 -IENGSLSF----------------------------------------------------LPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp -CCTTGGGG----------------------------------------------------CTTCCEEECCSSCCC-BCC
T ss_pred -CChhHhhC----------------------------------------------------CCCCCEEECCCCcCe-ecC
Confidence 33322322 334899999999998 788
Q ss_pred hhhccCCCCCEEeCcCceecccCCccccC------CCCCCEEECCCCcCc--ccCcccccCCCCCCEEeccCCc
Q 039564 313 TSIANLKGLQVLSLANNNLEGHIPSCFGD------LTKLESLDLSNNWFS--GQIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 313 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~N~ 378 (485)
..+..+++|++|++++|++++..+..|.. ...|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88999999999999999999777776654 367899999999887 5778889999999999999885
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-31 Score=279.45 Aligned_cols=370 Identities=18% Similarity=0.156 Sum_probs=262.6
Q ss_pred CCCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564 1 RSCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF 79 (485)
Q Consensus 1 ~~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~ 79 (485)
++|+|..+|+ +|+++++|++|+|++|++++..+..|. ++++|++|++++|+++++.+. .+..+..|++|++++|.
T Consensus 84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~--~L~~L~~L~Ls~N~l~~l~~~--~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 84 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNL 159 (635)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT--TCTTCCEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSC
T ss_pred CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc--CCCCCCEEECCCCcCCCCChh--hhhcCcccCeeccccCc
Confidence 4788977765 799999999999999999966667788 899999999999999987654 44444555999999999
Q ss_pred ccccC-CCC---CCCCcEEEccCCcccccCChhhcCCCCCC----EEEcccCccccc-----------------------
Q 039564 80 LQGPI-PAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLY----ILDLSDNNLSGE----------------------- 128 (485)
Q Consensus 80 l~~~~-~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~----------------------- 128 (485)
+++.. |.. +++|++|++++|.+++..+..|..+.+++ .++++.|.+...
T Consensus 160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHH
T ss_pred cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccccccc
Confidence 98643 333 89999999999999877676654433221 233333322100
Q ss_pred ----------------------------------------------------------CCCccc---cCc----------
Q 039564 129 ----------------------------------------------------------LPRCLG---NFS---------- 137 (485)
Q Consensus 129 ----------------------------------------------------------~p~~l~---~l~---------- 137 (485)
++..+. .+.
T Consensus 240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (635)
T 4g8a_A 240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE 319 (635)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence 000000 000
Q ss_pred --ccccCCCCccEEEccCCcccccCCc-------------------cccCCCCCcEEEccCCcccC--CcChhhhCCCCC
Q 039564 138 --DTFMNGSNLGIIDMSHNLLQGRIPK-------------------SLANCAVLEIIDLGNNQIID--TFPAWLGTLSEL 194 (485)
Q Consensus 138 --~~~~~l~~L~~L~Ls~n~i~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L 194 (485)
..+.....++.|++.+|.+....+. ....+++|+.|++++|.+.. ..+..+..+.+|
T Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 320 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp ECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred cccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhh
Confidence 2334456677777777766532221 23357889999999988753 345667778888
Q ss_pred CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCc
Q 039564 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH 274 (485)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (485)
+.+++..+.... .+..+ ..+++|+.+++..+......+...+..+..++.+++..+.........+ ....
T Consensus 400 ~~L~~~~~~~~~-~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~-------~~~~ 469 (635)
T 4g8a_A 400 KYLDLSFNGVIT-MSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-------NGLS 469 (635)
T ss_dssp CEEECCSCSEEE-ECSCC--TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT-------TTCT
T ss_pred hhhhcccccccc-ccccc--cccccccchhhhhcccccccccccccccccccccccccccccccccccc-------ccch
Confidence 888888887763 34444 5677888888887776656665666777777776665443222111110 1112
Q ss_pred ccceEEeeecCccc----ccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564 275 YYYSLTMSNKGQML----SYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350 (485)
Q Consensus 275 ~~~~l~~~~~~~~~----~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (485)
.+..+.+..+.... .....++.|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 34445554443221 12234678999999999999989999999999999999999999888999999999999999
Q ss_pred CCCcCcccCcccccCC-CCCCEEeccCCcccccCC
Q 039564 351 SNNWFSGQIPQQLTGL-TFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 351 s~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 384 (485)
++|++++..|..+..+ ++|+.|++++|++++...
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999988 689999999999997543
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7e-33 Score=263.08 Aligned_cols=247 Identities=29% Similarity=0.396 Sum_probs=200.2
Q ss_pred ccEEEcCCCcccc--cCCCC---CCCCcEEEccC-CcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCC
Q 039564 70 EFTLDLSSNFLQG--PIPAP---PTKTRHYLVSK-NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNG 143 (485)
Q Consensus 70 L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l 143 (485)
+++|++++|.+++ .+|.. ++.|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..++. +
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-------l 124 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-------I 124 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-------C
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-------C
Confidence 4667777777666 45443 67788888884 7787788888888888888888888888777865544 4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCC-CCCEEEeeccccccccCCccccCCCCCccE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS-ELDILVLQSNNFHGEIKEHKMECGFPKLRI 222 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 222 (485)
++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+.+.+|..+ ..++ |++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~ 201 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAF 201 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccE
Confidence 8888888888888888888888888899999988888878888888887 88899999888888888777 4555 888
Q ss_pred EEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEc
Q 039564 223 VDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVIL 302 (485)
Q Consensus 223 L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~L 302 (485)
|++++|.+.+..|.. +.. ++.|+.|++
T Consensus 202 L~Ls~N~l~~~~~~~-~~~----------------------------------------------------l~~L~~L~L 228 (313)
T 1ogq_A 202 VDLSRNMLEGDASVL-FGS----------------------------------------------------DKNTQKIHL 228 (313)
T ss_dssp EECCSSEEEECCGGG-CCT----------------------------------------------------TSCCSEEEC
T ss_pred EECcCCcccCcCCHH-Hhc----------------------------------------------------CCCCCEEEC
Confidence 999988887544432 222 334888888
Q ss_pred CCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 303 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
++|.+++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus 229 ~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 88888866555 788899999999999999999999999999999999999999988886 888999999999998544
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.4e-32 Score=269.13 Aligned_cols=336 Identities=22% Similarity=0.232 Sum_probs=196.0
Q ss_pred ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCC------------ccEEEcC
Q 039564 9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSG------------EFTLDLS 76 (485)
Q Consensus 9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l------------L~~L~l~ 76 (485)
|+.+ ..++|++|++++|.+ +.+|++++ .+++|++|++++|.+++..|. ++..+..+ +++|+++
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~--~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAE--NVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred cccc-ccccchhhhcccCch-hhCChhHh--cccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEec
Confidence 4444 368999999999999 69999999 999999999999999987775 55554432 5999999
Q ss_pred CCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc
Q 039564 77 SNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156 (485)
Q Consensus 77 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i 156 (485)
+|.+++. |..+++|++|++++|.+++ +|.. +++|++|++++|.++ .+|.. .++|++|++++|.+
T Consensus 80 ~~~l~~l-p~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----------~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 80 NLGLSSL-PELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----------PPLLEYLGVSNNQL 143 (454)
T ss_dssp TSCCSCC-CSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----------CTTCCEEECCSSCC
T ss_pred CCccccC-CCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----------CCCCCEEECcCCCC
Confidence 9999864 4467899999999999996 6653 367888888888776 33321 14555666666665
Q ss_pred cccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc----
Q 039564 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG---- 232 (485)
Q Consensus 157 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---- 232 (485)
++ +| .|..+++|++|++++|.+++ +|.. .++|++|++++|.+.+ +| .+ ..+++|+.|++++|.+.+
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCSSCCSSCCCC
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cc--cCCCCCCEEECCCCcCCcCCCC
Confidence 53 44 35555556666665555543 2221 2355555555555543 33 22 344555555555554442
Q ss_pred ---------------cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccc
Q 039564 233 ---------------NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL 297 (485)
Q Consensus 233 ---------------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L 297 (485)
.+|. +..+++|+.++++++... .++..+..+..+++..+.... .+..++.|
T Consensus 214 ~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~-----------~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L 279 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLK-----------TLPDLPPSLEALNVRDNYLTD-LPELPQSL 279 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS-----------SCCSCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCC-----------cccccccccCEEECCCCcccc-cCcccCcC
Confidence 3442 444455555544433211 112233456666666655443 23345677
Q ss_pred cEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 298 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
+.|++++|.+++ +|. -.++|+.|++++|++++ ++. -.++|+.|++++|++++ +|.. +++|+.|++++|
T Consensus 280 ~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 280 TFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp CEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 888888887775 221 12578888888888774 222 12589999999999995 6654 589999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564 378 NLTGPIPEANQFPTFDSSSFDGNSGLC 404 (485)
Q Consensus 378 ~l~~~~p~~~~~~~l~~~~~~~n~~lc 404 (485)
++++ +|. .+..++.+++.+|...+
T Consensus 348 ~l~~-lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 348 HLAE-VPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSC-CCC--CCTTCCEEECCSSCCSS
T ss_pred cccc-ccc--hhhhccEEECCCCCCCc
Confidence 9985 565 56788888898887665
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=1e-30 Score=260.72 Aligned_cols=296 Identities=19% Similarity=0.168 Sum_probs=245.9
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
++|.+..+| .++.+++|++|++++|.+++ +| ++ .+++|++|++++|.+++. .+..+..+ ++|++++|.+
T Consensus 50 s~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~--~l~~L~~L~Ls~N~l~~~----~~~~l~~L-~~L~L~~N~l 118 (457)
T 3bz5_A 50 HNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LS--QNTNLTYLACDSNKLTNL----DVTPLTKL-TYLNCDTNKL 118 (457)
T ss_dssp CSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCC----CCTTCTTC-CEEECCSSCC
T ss_pred cCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cc--cCCCCCEEECcCCCCcee----ecCCCCcC-CEEECCCCcC
Confidence 468887787 79999999999999999996 44 77 899999999999999986 24445454 9999999999
Q ss_pred cccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
++.....+++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+++|++|++++|.+++ +
T Consensus 119 ~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 119 TKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---------VTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---------CTTCTTCCEEECCSSCCCC-C
T ss_pred CeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---------cccCCcCCEEECCCCccce-e
Confidence 986544499999999999999964 3 8899999999999996554542 3456999999999999996 4
Q ss_pred CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564 161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240 (485)
Q Consensus 161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 240 (485)
| +..+++|++|++++|.+++. .++.+++|++|++++|++.+ +| + ..+++|+.|++++|.+++ +| ..
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~l~~-~~---~~ 251 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNPLTE-LD---VS 251 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSC-CC---CT
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCcCCC-cC---HH
Confidence 4 88999999999999999876 37889999999999999996 55 4 678999999999999985 44 23
Q ss_pred ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564 241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG 320 (485)
Q Consensus 241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 320 (485)
.+.+|+.+++.. ..++.+++++|.+.+.+| ++.+++
T Consensus 252 ~l~~L~~L~l~~------------------------------------------n~L~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 252 TLSKLTTLHCIQ------------------------------------------TDLLEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp TCTTCCEEECTT------------------------------------------CCCSCCCCTTCTTCCEEE--CTTCTT
T ss_pred HCCCCCEEeccC------------------------------------------CCCCEEECCCCccCCccc--cccccc
Confidence 445555544321 238889999999888877 468899
Q ss_pred CCEEeCcCceecccCCc--------cccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 321 LQVLSLANNNLEGHIPS--------CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 321 L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
|+.|++++|...+.+|. .+..+++|+.|++++|++++. + +..+++|+.|++++|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 99999999987666654 256778999999999999974 3 8899999999999999987
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.4e-31 Score=252.12 Aligned_cols=283 Identities=18% Similarity=0.177 Sum_probs=209.5
Q ss_pred CCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 039564 43 NFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119 (485)
Q Consensus 43 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 119 (485)
+++.++++++.++.+... + .+.+++|++++|.+++..+.. +++|++|++++|.+++..|..|+++++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~--~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE--I---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSC--C---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCC--C---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 699999999999875432 3 245599999999998776643 78899999999999887788888999999999
Q ss_pred cccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccC--CcChhhhCCCCCCEE
Q 039564 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID--TFPAWLGTLSELDIL 197 (485)
Q Consensus 120 L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L 197 (485)
+++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..+..+ +|++|
T Consensus 109 L~~n~l~-~l~~~~~---------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP---------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CCSSCCC-SCCSSCC---------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCcCC-ccCcccc---------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 9999887 6665331 688899999998886666778888889999999888853 666777777 88888
Q ss_pred EeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccc
Q 039564 198 VLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY 277 (485)
Q Consensus 198 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
++++|.+.+ +|..+ .++|++|++++|.+.+..+. .+..
T Consensus 178 ~l~~n~l~~-l~~~~----~~~L~~L~l~~n~i~~~~~~-~l~~------------------------------------ 215 (332)
T 2ft3_A 178 RISEAKLTG-IPKDL----PETLNELHLDHNKIQAIELE-DLLR------------------------------------ 215 (332)
T ss_dssp BCCSSBCSS-CCSSS----CSSCSCCBCCSSCCCCCCTT-SSTT------------------------------------
T ss_pred ECcCCCCCc-cCccc----cCCCCEEECCCCcCCccCHH-HhcC------------------------------------
Confidence 888888874 55544 26788888888888743222 2222
Q ss_pred eEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcc
Q 039564 278 SLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG 357 (485)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 357 (485)
++.|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++
T Consensus 216 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 216 ----------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp ----------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred ----------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 233777888888888777777888888888888888888 777778888888888888888886
Q ss_pred cCcccccC------CCCCCEEeccCCccc--ccCCCC-CCCCCCCCCCCCCC
Q 039564 358 QIPQQLTG------LTFLEFFNVSHNNLT--GPIPEA-NQFPTFDSSSFDGN 400 (485)
Q Consensus 358 ~~p~~~~~------l~~L~~L~l~~N~l~--~~~p~~-~~~~~l~~~~~~~n 400 (485)
..+..|.. .+.|+.+++++|++. +..|.. ..++.+..+.+.+|
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 66666654 356788888888876 222221 23444455555444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.7e-30 Score=245.35 Aligned_cols=264 Identities=19% Similarity=0.195 Sum_probs=142.4
Q ss_pred CCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 039564 43 NFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119 (485)
Q Consensus 43 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 119 (485)
+++.++++++.++.+... + .+.+++|++++|.+++..+.. +++|++|++++|.+++..|..|+++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~--~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD--L---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCS--C---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCcc--C---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 567777777766654221 1 233466666666666554432 56666666666666655566666666666666
Q ss_pred cccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccC--CcChhhhCCCCCCEE
Q 039564 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID--TFPAWLGTLSELDIL 197 (485)
Q Consensus 120 L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L 197 (485)
+++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..+..+++|++|
T Consensus 107 Ls~n~l~-~l~~~~~---------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP---------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CCSSCCS-BCCSSCC---------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCcCC-ccChhhc---------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 6666665 4443221 456666666666665555555666666666666665532 444555566666666
Q ss_pred EeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccc
Q 039564 198 VLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY 277 (485)
Q Consensus 198 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
++++|.+. .+|... .++|+.|++++|.+.+..+.. +..
T Consensus 177 ~l~~n~l~-~l~~~~----~~~L~~L~l~~n~l~~~~~~~-~~~------------------------------------ 214 (330)
T 1xku_A 177 RIADTNIT-TIPQGL----PPSLTELHLDGNKITKVDAAS-LKG------------------------------------ 214 (330)
T ss_dssp ECCSSCCC-SCCSSC----CTTCSEEECTTSCCCEECTGG-GTT------------------------------------
T ss_pred ECCCCccc-cCCccc----cccCCEEECCCCcCCccCHHH-hcC------------------------------------
Confidence 66666555 333332 145555666555555322211 111
Q ss_pred eEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcc
Q 039564 278 SLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG 357 (485)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 357 (485)
++.|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++
T Consensus 215 ----------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 215 ----------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp ----------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred ----------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 122555555555555444445555555555555555555 455555555555555555555554
Q ss_pred cCcccccC------CCCCCEEeccCCccc
Q 039564 358 QIPQQLTG------LTFLEFFNVSHNNLT 380 (485)
Q Consensus 358 ~~p~~~~~------l~~L~~L~l~~N~l~ 380 (485)
..+..|.. .+.++.+++++|++.
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cChhhcCCcccccccccccceEeecCccc
Confidence 44444432 244555555555543
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=7.5e-29 Score=247.91 Aligned_cols=250 Identities=20% Similarity=0.171 Sum_probs=213.7
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
..++++++.++......++++++|++++|.+++..+..|.++++|++|+|++|.+++..|. .|.++++|++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-------~~~~l~~L~~L~ 129 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-------AFNGLASLNTLE 129 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEE
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-------hccCcccCCEEE
Confidence 6788888888865555578899999999999988889999999999999999999865554 455568999999
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
|++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+ ..+++|++|++++|.+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTSCC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCCcc
Confidence 999999977777899999999999999999887778899999999999999655556655422 6889999999999998
Q ss_pred CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310 (485)
Q Consensus 231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 310 (485)
+ .+|. +. .++.|+.|++++|.+++.
T Consensus 209 ~-~~~~--~~----------------------------------------------------~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 209 K-DMPN--LT----------------------------------------------------PLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp S-SCCC--CT----------------------------------------------------TCTTCCEEECTTSCCSEE
T ss_pred c-cccc--cc----------------------------------------------------ccccccEEECcCCcCccc
Confidence 8 4442 11 134599999999999988
Q ss_pred CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
.|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 8999999999999999999999888999999999999999999999877788899999999999999987643
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.6e-29 Score=238.10 Aligned_cols=249 Identities=22% Similarity=0.242 Sum_probs=169.3
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccccc--CCCccccCcccccCCCCccE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE--LPRCLGNFSDTFMNGSNLGI 148 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~~~~~l~~L~~ 148 (485)
+.++++++.++......++++++|++++|.++...+..|.++++|++|++++|.++.. .|. .+..+++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-------SDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-------HHHSCSCCCE
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-------ccccccccCE
Confidence 4555555555544333355666666666666643334466777777777777766521 122 2223467777
Q ss_pred EEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccC
Q 039564 149 IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN 227 (485)
Q Consensus 149 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 227 (485)
|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~ 159 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAG 159 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTT
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCC
Confidence 777777776 455567777777777777777766554 466777777777777777766555555 5667777777777
Q ss_pred ccCCc-cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCc
Q 039564 228 NSFTG-NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG 306 (485)
Q Consensus 228 n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 306 (485)
|.+.+ ..|.. +.. ++.|+.|++++|.
T Consensus 160 n~l~~~~~~~~-~~~----------------------------------------------------l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 160 NSFQENFLPDI-FTE----------------------------------------------------LRNLTFLDLSQCQ 186 (306)
T ss_dssp CEEGGGEECSC-CTT----------------------------------------------------CTTCCEEECTTSC
T ss_pred CccccccchhH-Hhh----------------------------------------------------CcCCCEEECCCCC
Confidence 77653 12221 111 2347777777777
Q ss_pred CcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCC-CCCEEeccCCccccc
Q 039564 307 FHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT-FLEFFNVSHNNLTGP 382 (485)
Q Consensus 307 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~ 382 (485)
+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7766677788888888888888888877777788888888888888888888888888874 888888888888764
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9e-29 Score=246.47 Aligned_cols=250 Identities=21% Similarity=0.172 Sum_probs=209.9
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
..++.+++.++..+....++++.|++++|.+.+..+..|.++++|++|+|++|.+++..+ ..|.++++|++|+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-------~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-------GAFNGLANLNTLE 118 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-------GGGTTCSSCCEEE
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-------hhccCCccCCEEE
Confidence 677888887776555557888889999999988778889999999999999999884444 3455668999999
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
|++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+ ..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCCCcC
Confidence 999999977777899999999999999999888788899999999999998665556555322 6789999999999998
Q ss_pred CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310 (485)
Q Consensus 231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 310 (485)
+ .+|. +.. ++.|+.|++++|.+++.
T Consensus 198 ~-~~~~--~~~----------------------------------------------------l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 198 R-EIPN--LTP----------------------------------------------------LIKLDELDLSGNHLSAI 222 (440)
T ss_dssp S-SCCC--CTT----------------------------------------------------CSSCCEEECTTSCCCEE
T ss_pred c-cccc--cCC----------------------------------------------------CcccCEEECCCCccCcc
Confidence 7 4542 111 34489999999999988
Q ss_pred CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
.|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 8999999999999999999999888999999999999999999999877888899999999999999998643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=244.11 Aligned_cols=251 Identities=17% Similarity=0.167 Sum_probs=136.5
Q ss_pred cEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCcc
Q 039564 71 FTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLG 147 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~ 147 (485)
++|++++|.+++..+.. +++|++|++++|.+++..|..|.++++|++|++++|.++ .+|. ..|..+++|+
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~------~~~~~l~~L~ 127 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSS------SWFKPLSSLT 127 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCH------HHHTTCTTCS
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCH------hHhCCCccCC
Confidence 44444444444333311 444555555555555444455555555555555555555 3332 1123345555
Q ss_pred EEEccCCcccccCC-ccccCCCCCcEEEccCC-cccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEc
Q 039564 148 IIDMSHNLLQGRIP-KSLANCAVLEIIDLGNN-QIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDL 225 (485)
Q Consensus 148 ~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 225 (485)
+|++++|.+++..+ ..|..+++|++|++++| .+....+..|..+++|++|++++|.+.+..|..+ ..+++|++|++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l 205 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLIL 205 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEE
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecC
Confidence 55555555553222 24555556666666555 3444444555555666666666665555445544 45556666666
Q ss_pred cCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCC
Q 039564 226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305 (485)
Q Consensus 226 ~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 305 (485)
++|.+. .++..++.. ++.|+.|++++|
T Consensus 206 ~~n~l~-~~~~~~~~~----------------------------------------------------~~~L~~L~L~~n 232 (353)
T 2z80_A 206 HMKQHI-LLLEIFVDV----------------------------------------------------TSSVECLELRDT 232 (353)
T ss_dssp ECSCST-THHHHHHHH----------------------------------------------------TTTEEEEEEESC
T ss_pred CCCccc-cchhhhhhh----------------------------------------------------cccccEEECCCC
Confidence 665554 333322221 122555555555
Q ss_pred cCcccCchhh---ccCCCCCEEeCcCceecc----cCCccccCCCCCCEEECCCCcCcccCccc-ccCCCCCCEEeccCC
Q 039564 306 GFHGEIPTSI---ANLKGLQVLSLANNNLEG----HIPSCFGDLTKLESLDLSNNWFSGQIPQQ-LTGLTFLEFFNVSHN 377 (485)
Q Consensus 306 ~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N 377 (485)
.+++..+..+ ...+.++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|.. |..+++|+.|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 5554333222 234556666776666654 35667777888888888888888 44443 577888888888888
Q ss_pred cccccCC
Q 039564 378 NLTGPIP 384 (485)
Q Consensus 378 ~l~~~~p 384 (485)
++++..|
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 8876554
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=246.18 Aligned_cols=253 Identities=22% Similarity=0.241 Sum_probs=210.5
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564 90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 169 (485)
....++..+..++ .+|..+. ++++.|+|++|.+++..+. .|..+++|++|+|++|.+++..+..|.++++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~-------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVN-------SFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTT-------TTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHH-------HhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 4567888888887 6776553 6889999999998855443 3455689999999999999877788999999
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 249 (485)
|++|+|++|.++...+..|..+++|++|++++|.+....+..+ ..+++|+.|++++|...+.++...|..
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------- 183 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG-------- 183 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc--------
Confidence 9999999999988777788999999999999999885555455 678999999999865444555443333
Q ss_pred ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 329 (485)
+++|+.|++++|.++ .+| .+..+++|++|+|++|
T Consensus 184 --------------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 184 --------------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp --------------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTS
T ss_pred --------------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCC
Confidence 334899999999998 555 4788999999999999
Q ss_pred eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
++++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.. ..++.+..+++.+||+.|+|.+
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 999888999999999999999999999999999999999999999999999766544 4577888999999999999965
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=246.52 Aligned_cols=253 Identities=21% Similarity=0.232 Sum_probs=210.3
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564 90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 169 (485)
....++.++..++ .+|..+. +++++|+|++|.+++..|.. |..+++|++|++++|.+++..+..|.++++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~-------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT-------FRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT-------TTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH-------cCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 4567888888887 5676553 68899999999998655544 455689999999999999888888999999
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 249 (485)
|++|+|++|.++...+..|..+++|++|++++|.+....+..+ ..+++|+.|++++|...+.++...|..
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------- 194 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG-------- 194 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------
Confidence 9999999999988888888899999999999999885544455 678999999999855444555443332
Q ss_pred ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 329 (485)
++.|+.|++++|.+.+ +| .+..+++|++|+|++|
T Consensus 195 --------------------------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 195 --------------------------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp --------------------------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTS
T ss_pred --------------------------------------------CCCCCEEECCCCcccc-cc-cccccccccEEECcCC
Confidence 3348999999999984 44 4788999999999999
Q ss_pred eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..++.+..+++.+||+.|+|.+
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999765544 4577888899999999999975
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=240.95 Aligned_cols=282 Identities=20% Similarity=0.203 Sum_probs=214.4
Q ss_pred CCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCC
Q 039564 14 QQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTK 90 (485)
Q Consensus 14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~ 90 (485)
.|+.....+++++.++ .+|..+. ++|++|++++|.++++.+. .+.++ ..|++|++++|.+++..+.. +++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRITYISNS-DLQRC-VNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcCcccCHH-HhccC-CCCCEEECCCCccCccCHhhcCCCCC
Confidence 3566677888888888 7777654 4788999999988876553 34444 44489999999888776653 788
Q ss_pred CcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC-cccccCCccccCCCC
Q 039564 91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN-LLQGRIPKSLANCAV 169 (485)
Q Consensus 91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 169 (485)
|++|++++|.+++..+..|+++++|++|++++|.++ .+|.. ..|..+++|++|++++| .+.+..+..|..+++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 999999999998655556889999999999999988 55530 13455689999999998 577666788999999
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 249 (485)
|++|++++|.+.+..|..+..+++|++|++++|.+. .++..+. ..+++|+.|++++|.+++..+.. +...
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~-l~~~------- 245 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV-DVTSSVECLELRDTDLDTFHFSE-LSTG------- 245 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH-HHTTTEEEEEEESCBCTTCCCC-------------
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhh-hhcccccEEECCCCccccccccc-cccc-------
Confidence 999999999998888889999999999999999986 4444332 45789999999999988433221 1100
Q ss_pred ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc----cCchhhccCCCCCEEe
Q 039564 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG----EIPTSIANLKGLQVLS 325 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ 325 (485)
.....++.++++++.+.+ .+|..+..+++|++|+
T Consensus 246 ------------------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 246 ------------------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp -------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred ------------------------------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 012236667777776664 4678899999999999
Q ss_pred CcCceecccCCccccCCCCCCEEECCCCcCcccCc
Q 039564 326 LANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP 360 (485)
Q Consensus 326 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 360 (485)
+++|++++..+..|..+++|+.|++++|.+.+..|
T Consensus 284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999994444446899999999999999997544
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.6e-28 Score=234.48 Aligned_cols=226 Identities=19% Similarity=0.210 Sum_probs=192.3
Q ss_pred CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564 88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 167 (485)
...+++|++++|.+. .+|..+.++++|++|++++|.++ .+|..++. +++|++|++++|.++ .+|..+..+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-------l~~L~~L~Ls~n~l~-~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-------FAGLETLTLARNPLR-ALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-------GTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhc-------cCCCCEEECCCCccc-cCcHHHhcC
Confidence 467888888888887 67877888899999999999888 78866655 478999999999988 778888889
Q ss_pred CCCcEEEccCCcccCCcChhhhC---------CCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564 168 AVLEIIDLGNNQIIDTFPAWLGT---------LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY 238 (485)
Q Consensus 168 ~~L~~L~Ls~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 238 (485)
++|++|++++|.+.+.+|..+.. +++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~-~l~~~- 224 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLS-ALGPA- 224 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCC-CCCGG-
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCC-cCchh-
Confidence 99999999988887877776654 899999999999988 777776 67889999999999988 45543
Q ss_pred hcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccC
Q 039564 239 FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANL 318 (485)
Q Consensus 239 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 318 (485)
+.. ++.|+.|++++|.+.+.+|..+..+
T Consensus 225 l~~----------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 225 IHH----------------------------------------------------LPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp GGG----------------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred hcc----------------------------------------------------CCCCCEEECcCCcchhhhHHHhcCC
Confidence 222 3348899999999998999999999
Q ss_pred CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccc
Q 039564 319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 380 (485)
++|++|+|++|++.+.+|..+..+++|+.|++++|.+.+.+|+.+.++++|+.+++..+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999987765
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.4e-29 Score=233.41 Aligned_cols=226 Identities=21% Similarity=0.216 Sum_probs=145.4
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
++++++++.++......++++++|++++|.+++..+..|..+++|++|++++|.+++..|.. |..+++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-------FTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------TTTCTTCCEEE
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-------cCCccCCCEEe
Confidence 45666666666443334566777777777777655666777777777777777777544533 33446777777
Q ss_pred ccCCc-ccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564 151 MSHNL-LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229 (485)
Q Consensus 151 Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (485)
+++|. ++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNR 164 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCc
Confidence 77776 665556677777777777777777766666667777777777777777664333334 455666666666665
Q ss_pred CCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc
Q 039564 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG 309 (485)
Q Consensus 230 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 309 (485)
++ +
T Consensus 165 l~-----------------------------------------------------------------------------~ 167 (285)
T 1ozn_A 165 IS-----------------------------------------------------------------------------S 167 (285)
T ss_dssp CC-----------------------------------------------------------------------------E
T ss_pred cc-----------------------------------------------------------------------------c
Confidence 54 2
Q ss_pred cCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 310 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 2333455566666666666666666666666666666666666666655555566666666666666666643
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-28 Score=233.18 Aligned_cols=278 Identities=22% Similarity=0.232 Sum_probs=172.3
Q ss_pred CEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccC
Q 039564 19 KALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSK 98 (485)
Q Consensus 19 ~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 98 (485)
+.++.+++.++ .+|..+. ++|++|++++|.++.+.+ .++.....|++|++++|.++..
T Consensus 10 ~~l~c~~~~l~-~ip~~~~----~~l~~L~L~~n~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~--------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFK--------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC----TTCCEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCEE---------------
T ss_pred CEEEcCCCCcc-cCCCCCC----CCCCEEECCCCccCccCH--hHhhccccCCEEECCCCccCcc---------------
Confidence 46777777776 5665432 467777777777765433 2333333336666666655421
Q ss_pred CcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC-ccccCCCCCcEEEccC
Q 039564 99 NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP-KSLANCAVLEIIDLGN 177 (485)
Q Consensus 99 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~ 177 (485)
+..+..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 68 ----~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 68 ----GCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp ----EEEEHHHHSCSCCCEEECCSCSEE-EEEEE-------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred ----cCcccccccccccCEEECCCCccc-cChhh-------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 122445556666666666666665 34432 2334666677777666664433 4566667777777777
Q ss_pred CcccCCcChhhhCCCCCCEEEeecccccc-ccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhh
Q 039564 178 NQIIDTFPAWLGTLSELDILVLQSNNFHG-EIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM 256 (485)
Q Consensus 178 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~ 256 (485)
|.+.+..+..+..+++|++|++++|.+.+ ..|..+ ..+++|++|++++|.+.+..|.. +..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~--------------- 197 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTA-FNS--------------- 197 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT-TTT---------------
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCCCCcCCcCHHH-hcC---------------
Confidence 77666666666667777777777777664 345555 56677777777777766332321 211
Q ss_pred hcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCC
Q 039564 257 RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336 (485)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 336 (485)
++.|+.|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 198 -------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 198 -------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp -------------------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred -------------------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 2337777777777776666677888889999999999888888
Q ss_pred ccccCCC-CCCEEECCCCcCcccCc--ccccCCCCCCEEeccCCcccccCCC
Q 039564 337 SCFGDLT-KLESLDLSNNWFSGQIP--QQLTGLTFLEFFNVSHNNLTGPIPE 385 (485)
Q Consensus 337 ~~~~~l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~ 385 (485)
..+..++ +|+.|++++|.+++.-+ .....+...+.+.+..+.+.+..|.
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 8888874 89999999998875421 1112223344445556666665554
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.7e-31 Score=264.31 Aligned_cols=341 Identities=18% Similarity=0.129 Sum_probs=248.0
Q ss_pred hhhCCCCCCEEECCCCcCCC----CCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCC----CccEEEcCCCcccc
Q 039564 11 FLKQQKHLKALDLSSNKLHG----NIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS----GEFTLDLSSNFLQG 82 (485)
Q Consensus 11 ~~~~l~~L~~L~Ls~n~~~~----~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~----lL~~L~l~~n~l~~ 82 (485)
.+..+++|++|++++|.+.+ .++..+. .+++|++|++++|.++..... .++.... .|++|++++|.++.
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVH-CVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHH-HHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHH-HHHHHHhhCCCceeEEEccCCCCCH
Confidence 47889999999999999885 3455666 789999999999998753221 2222222 45999999999884
Q ss_pred c----CC---CCCCCCcEEEccCCcccccCChhhc-----CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 83 P----IP---APPTKTRHYLVSKNNLTGEIPSWIC-----NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 83 ~----~~---~~~~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
. ++ ..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..+..+. ..+..+++|++|+
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~---~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA---SVLRAKPDFKELT 176 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---HHHHHCTTCCEEE
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH---HHHhhCCCCCEEE
Confidence 2 22 2378999999999999865444433 356899999999998854322222 3345568999999
Q ss_pred ccCCcccccCCcccc-----CCCCCcEEEccCCcccCC----cChhhhCCCCCCEEEeeccccccccCCcc---ccCCCC
Q 039564 151 MSHNLLQGRIPKSLA-----NCAVLEIIDLGNNQIIDT----FPAWLGTLSELDILVLQSNNFHGEIKEHK---MECGFP 218 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~l~ 218 (485)
+++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.....+ ....++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 999999865554443 366999999999999764 46778889999999999998875321111 113578
Q ss_pred CccEEEccCccCCcc----CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccccc
Q 039564 219 KLRIVDLSNNSFTGN----LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP 294 (485)
Q Consensus 219 ~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (485)
+|++|++++|.+++. ++. .+..+++|+.++++++..-......+ ........
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l-----------------------~~~l~~~~ 312 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEGARLL-----------------------CETLLEPG 312 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHHHHHH-----------------------HHHHTSTT
T ss_pred CceEEECcCCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHHHHHH-----------------------HHHhccCC
Confidence 999999999998743 232 25567888888877653211100000 00001113
Q ss_pred ccccEEEcCCCcCccc----CchhhccCCCCCEEeCcCceecccCCccccC-----CCCCCEEECCCCcCcc----cCcc
Q 039564 295 YILTAVILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCFGD-----LTKLESLDLSNNWFSG----QIPQ 361 (485)
Q Consensus 295 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~ 361 (485)
+.|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|+.|++++|.+++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 4699999999999865 4667778899999999999998665555543 6799999999999986 6788
Q ss_pred cccCCCCCCEEeccCCcccc
Q 039564 362 QLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 362 ~~~~l~~L~~L~l~~N~l~~ 381 (485)
.+..+++|+.|++++|++++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCH
T ss_pred HHHhCCCccEEECCCCCCCH
Confidence 88889999999999999875
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.6e-28 Score=230.69 Aligned_cols=233 Identities=19% Similarity=0.200 Sum_probs=147.6
Q ss_pred CCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEE
Q 039564 15 QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHY 94 (485)
Q Consensus 15 l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L 94 (485)
.+++++|+|++|.+. .+|..++ .+++|++|++++|.++. .|. .+.. +++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~--~l~~L~~L~L~~n~l~~-lp~-~~~~----------------------l~~L~~L 132 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAF--RLSHLQHMTIDAAGLME-LPD-TMQQ----------------------FAGLETL 132 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGG--GGTTCSEEEEESSCCCC-CCS-CGGG----------------------GTTCSEE
T ss_pred ccceeEEEccCCCch-hcChhhh--hCCCCCEEECCCCCccc-hhH-HHhc----------------------cCCCCEE
Confidence 366777777777766 6666666 56677777777776663 222 2222 3445555
Q ss_pred EccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccC--cccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564 95 LVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF--SDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI 172 (485)
Q Consensus 95 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 172 (485)
++++|.++ .+|..|+++++|++|++++|.+.+.+|..++.. ...|..+++|++|++++|.++ .+|..+..+++|++
T Consensus 133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 55555555 678888889999999999988887888765431 122333455666666666655 55555555666666
Q ss_pred EEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccc
Q 039564 173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ 252 (485)
Q Consensus 173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~ 252 (485)
|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+ ..+++|++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~------------------------------ 257 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKR------------------------------ 257 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCE------------------------------
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCE------------------------------
Confidence 6666665543 33345555555555555555555555444 34444444
Q ss_pred hhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec
Q 039564 253 LRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE 332 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (485)
|++++|.+.+.+|..+..+++|++|+|++|++.
T Consensus 258 -----------------------------------------------L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 258 -----------------------------------------------LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp -----------------------------------------------EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred -----------------------------------------------EECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 445555444566666777888888888888888
Q ss_pred ccCCccccCCCCCCEEECCCCcCc
Q 039564 333 GHIPSCFGDLTKLESLDLSNNWFS 356 (485)
Q Consensus 333 ~~~p~~~~~l~~L~~L~Ls~N~l~ 356 (485)
+.+|..++.+++|+.+++..+.+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888777665
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.2e-27 Score=242.35 Aligned_cols=263 Identities=25% Similarity=0.286 Sum_probs=210.7
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL 95 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~ 95 (485)
.++++|++++|.++ .+|..+. ++|++|++++|.++.+.. ....|++|++++|.+++. |..+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l-p~~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSL-PVLPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCC-CCCCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcC-CCCCCCCCEEE
Confidence 36899999999998 7887654 689999999999986532 234559999999999854 44789999999
Q ss_pred ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564 96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175 (485)
Q Consensus 96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 175 (485)
+++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|++|++++|.+++ +|. ..++|+.|++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~----------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L 168 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL----------PPGLQELSVSDNQLAS-LPA---LPSELCKLWA 168 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC----------CTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC----------CCCCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence 99999985 554 5788999999999988 56642 2789999999999984 444 3467999999
Q ss_pred cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY 255 (485)
Q Consensus 176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~ 255 (485)
++|.++.. | ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.++ .+|..
T Consensus 169 ~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~~-----~~~L~~L~L~~N~l~-~l~~~------------------ 219 (622)
T 3g06_A 169 YNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLT-SLPAL------------------ 219 (622)
T ss_dssp CSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-SCCCC------------------
T ss_pred CCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCCc-----cchhhEEECcCCccc-ccCCC------------------
Confidence 99999764 4 457899999999999884 4443 478999999999887 44421
Q ss_pred hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564 256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 335 (485)
+++|+.|++++|.+++ +| ..+++|+.|+|++|+++ .+
T Consensus 220 --------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 220 --------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp --------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred --------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence 2348899999999885 55 45688999999999998 56
Q ss_pred CccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC
Q 039564 336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385 (485)
Q Consensus 336 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 385 (485)
|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 65 5688999999999999 7788899999999999999999876553
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.7e-27 Score=240.47 Aligned_cols=261 Identities=26% Similarity=0.326 Sum_probs=216.3
Q ss_pred CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564 1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l 80 (485)
++|+++++|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|.++++.. ....|++|++++|.+
T Consensus 48 s~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 48 GESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPL 113 (622)
T ss_dssp CSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC------CCTTCCEEEECSCCC
T ss_pred cCCCcCccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC------CCCCCCEEECcCCcC
Confidence 4688899999776 89999999999999 6666 36799999999999987532 334559999999999
Q ss_pred cccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564 81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160 (485)
Q Consensus 81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~ 160 (485)
++... .+++|+.|++++|.+++ +|.. +++|++|++++|.++ .+|.. .++|+.|++++|.+++ +
T Consensus 114 ~~l~~-~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~~----------~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 114 THLPA-LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPAL----------PSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCCCC-CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC----------CTTCCEEECCSSCCSC-C
T ss_pred CCCCC-CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCCc----------cCCCCEEECCCCCCCC-C
Confidence 97544 78999999999999985 6653 589999999999998 55642 2789999999999994 5
Q ss_pred CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564 161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240 (485)
Q Consensus 161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 240 (485)
| ..+++|++|++++|.+++..+ .+++|+.|++++|.+. .+|.. +++|+.|++++|.++ .+|..
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~~-----~~~L~~L~Ls~N~L~-~lp~~--- 239 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL-----PSGLKELIVSGNRLT-SLPVL--- 239 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCCC-----CTTCCEEECCSSCCS-CCCCC---
T ss_pred c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCCC-----CCCCCEEEccCCccC-cCCCC---
Confidence 5 457899999999999976432 3589999999999998 55542 478999999999998 35521
Q ss_pred ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564 241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG 320 (485)
Q Consensus 241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 320 (485)
+++|+.|++++|.++ .+|. .+++
T Consensus 240 -----------------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~ 262 (622)
T 3g06_A 240 -----------------------------------------------------PSELKELMVSGNRLT-SLPM---LPSG 262 (622)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred -----------------------------------------------------CCcCcEEECCCCCCC-cCCc---cccc
Confidence 344999999999998 5665 6789
Q ss_pred CCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCC
Q 039564 321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT 367 (485)
Q Consensus 321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 367 (485)
|+.|+|++|+++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999 7888999999999999999999998888776554
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-27 Score=224.36 Aligned_cols=215 Identities=22% Similarity=0.207 Sum_probs=118.5
Q ss_pred CCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc-cc
Q 039564 3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF-LQ 81 (485)
Q Consensus 3 n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~-l~ 81 (485)
+++..+|..+ .++|++|++++|.+++..+..|. .+++|++|++++|.++++.+. .+..+ ..|++|++++|. ++
T Consensus 21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAA-AFTGL-ALLEQLDLSDNAQLR 94 (285)
T ss_dssp SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSCTTCC
T ss_pred CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHh-hcCCc-cCCCEEeCCCCCCcc
Confidence 3455555543 35666666666666654445555 566666666666666655443 22223 333666666665 44
Q ss_pred ccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc
Q 039564 82 GPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG 158 (485)
Q Consensus 82 ~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~ 158 (485)
...+.. +++|++|++++|.+++..|..|.++++|++|++++|.+++..+ ..|..+++|++|++++|.+++
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-------DTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEECCSSCCCE
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-------hHhccCCCccEEECCCCcccc
Confidence 443332 5566666666666665555555666666666666666552222 123334566666666666654
Q ss_pred cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc
Q 039564 159 RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232 (485)
Q Consensus 159 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 232 (485)
..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEEC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCccC
Confidence 444455556666666666666655555556666666666666666554333333 455566666666665553
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.8e-29 Score=239.69 Aligned_cols=228 Identities=22% Similarity=0.264 Sum_probs=171.2
Q ss_pred CcEEEccCCccc-ccCChhhc-------CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564 91 TRHYLVSKNNLT-GEIPSWIC-------NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK 162 (485)
Q Consensus 91 L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~ 162 (485)
|++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+. +..+++|++|++++|.+++. |.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~-~~ 138 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL-----EATGPDLNILNLRNVSWATR-DA 138 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS-----SCCSCCCSEEEEESCBCSSS-SS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH-----HhcCCCccEEEccCCCCcch-hH
Confidence 555555555552 34555554 688888888888888877776431 14558888888888888866 77
Q ss_pred cccCC-----CCCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccccc--CCccccCCCCCccEEEccCccCCc--c
Q 039564 163 SLANC-----AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI--KEHKMECGFPKLRIVDLSNNSFTG--N 233 (485)
Q Consensus 163 ~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~--~ 233 (485)
.+..+ ++|++|++++|.+.+..+..|+.+++|++|++++|++.+.+ +..+....+++|++|++++|.+++ .
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 77666 88889999988888888788888889999999988876542 223322567889999999998872 1
Q ss_pred CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCc-
Q 039564 234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP- 312 (485)
Q Consensus 234 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p- 312 (485)
++...+.. ++.|+.|++++|.+.+..|
T Consensus 219 ~~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 219 VCSALAAA----------------------------------------------------RVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp HHHHHHHT----------------------------------------------------TCCCSEEECTTSCCCSSCCC
T ss_pred HHHHHHhc----------------------------------------------------CCCCCEEECCCCcCCcccch
Confidence 11111111 2348889999999987664
Q ss_pred hhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 313 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
..+..+++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 45667899999999999998 7777766 8899999999999965 66 8899999999999999875
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=4.9e-31 Score=264.78 Aligned_cols=357 Identities=16% Similarity=0.103 Sum_probs=254.5
Q ss_pred CCCCCEEECCCCcCCCCCCcc-cccCCCCCCcEEEccCCcCcCcCC--CCCCCCCCCCccEEEcCCCcccccCC----CC
Q 039564 15 QKHLKALDLSSNKLHGNIPKW-LLNPSMQNFSYLNLSKNSLTGFDQ--HPSVFPWSSGEFTLDLSSNFLQGPIP----AP 87 (485)
Q Consensus 15 l~~L~~L~Ls~n~~~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~lL~~L~l~~n~l~~~~~----~~ 87 (485)
.++|++|||++|.+++..... +. .+++|++|++++|.++.... .+..+...+.|++|++++|.+++..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHh--hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 367899999999998554443 55 78999999999999874210 01123334455999999999876322 11
Q ss_pred CC----CCcEEEccCCcccc----cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc
Q 039564 88 PT----KTRHYLVSKNNLTG----EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR 159 (485)
Q Consensus 88 ~~----~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~ 159 (485)
+. +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..+...++|++|++++|.+++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--GLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTSCCBGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--HHhcCCCcceEEECCCCCCCHH
Confidence 33 79999999999984 45888999999999999999987554444332 1123356899999999999864
Q ss_pred C----CccccCCCCCcEEEccCCcccCCcChhhh-----CCCCCCEEEeeccccccc----cCCccccCCCCCccEEEcc
Q 039564 160 I----PKSLANCAVLEIIDLGNNQIIDTFPAWLG-----TLSELDILVLQSNNFHGE----IKEHKMECGFPKLRIVDLS 226 (485)
Q Consensus 160 ~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~l~ 226 (485)
. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+. ++..+ ..+++|+.|+++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls 235 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALG 235 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEecc
Confidence 3 56677789999999999998765554444 367999999999998853 34444 567999999999
Q ss_pred CccCCccCC----hhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEc
Q 039564 227 NNSFTGNLP----SKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVIL 302 (485)
Q Consensus 227 ~n~l~~~~~----~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~L 302 (485)
+|.+.+... ..++..+..|+.++++++........ .+ ......++.|+.|++
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---------~l---------------~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG---------DL---------------CRVLRAKESLKELSL 291 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------HH---------------HHHHHHCTTCCEEEC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH---------HH---------------HHHHhhCCCcceEEC
Confidence 999874321 22333567788877765432110000 00 000112466999999
Q ss_pred CCCcCcccCchhhcc-----CCCCCEEeCcCceeccc----CCccccCCCCCCEEECCCCcCcccCcccccC-----CCC
Q 039564 303 SSNGFHGEIPTSIAN-----LKGLQVLSLANNNLEGH----IPSCFGDLTKLESLDLSNNWFSGQIPQQLTG-----LTF 368 (485)
Q Consensus 303 s~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~ 368 (485)
++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 999987655544443 36999999999999865 4666778899999999999998765554432 679
Q ss_pred CCEEeccCCcccc----cCCCC-CCCCCCCCCCCCCCC
Q 039564 369 LEFFNVSHNNLTG----PIPEA-NQFPTFDSSSFDGNS 401 (485)
Q Consensus 369 L~~L~l~~N~l~~----~~p~~-~~~~~l~~~~~~~n~ 401 (485)
|+.|++++|.+++ .+|.. ...+.+..+++.+|+
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 9999999999985 44432 235667777887775
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.2e-29 Score=237.00 Aligned_cols=204 Identities=23% Similarity=0.193 Sum_probs=127.4
Q ss_pred hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhh
Q 039564 109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188 (485)
Q Consensus 109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 188 (485)
|..+++|++|++++|.+++ +|. .++|++|++++|.+++..+.. +++|++|++++|.+++..+..+
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~-l~~-----------~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQE-LLV-----------GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp ETTCTTCCEEECCSSEEEE-EEE-----------CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT
T ss_pred hhhcCCCCEEECcCCcccc-ccC-----------CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh
Confidence 4455555555555555542 110 145555555555555433322 3445555666555555555555
Q ss_pred hCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc
Q 039564 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF 268 (485)
Q Consensus 189 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 268 (485)
..+++|++|++++|.+.+..+..+. ..+++|++|++++|.+++ ++...
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~-~~~~~------------------------------ 188 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYD-VKGQV------------------------------ 188 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCE-EECCC------------------------------
T ss_pred hccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCcc-ccccc------------------------------
Confidence 5555666666666655544333331 245566666666666552 11100
Q ss_pred ccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEE
Q 039564 269 YGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348 (485)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 348 (485)
.++.|+.|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 189 ------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 189 ------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp ------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred ------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 02336777777777764 4445788899999999999998 577788899999999
Q ss_pred ECCCCcCc-ccCcccccCCCCCCEEeccC-CcccccCCC
Q 039564 349 DLSNNWFS-GQIPQQLTGLTFLEFFNVSH-NNLTGPIPE 385 (485)
Q Consensus 349 ~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~ 385 (485)
++++|.+. +.+|.++..++.|+.+++++ +.+.+..|.
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999998 77888899999999999984 456655443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-28 Score=231.99 Aligned_cols=217 Identities=22% Similarity=0.202 Sum_probs=157.5
Q ss_pred cEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564 71 FTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII 149 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L 149 (485)
++|++++|.+++..+- .+++|++|++++|.+++. + ..++|++|++++|.+++..+. .+++|++|
T Consensus 61 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~----------~~~~L~~L 125 (317)
T 3o53_A 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS----------RGQGKKNI 125 (317)
T ss_dssp CEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC----------CCSSCEEE
T ss_pred CEEECCCCcCCcchhhhhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccCCcCcc----------ccCCCCEE
Confidence 4444444444433221 145566666666665532 2 237888888888888744332 23678888
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhh-CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG-TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN 228 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 228 (485)
++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+. +.. ..+++|++|++++|
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---VVFAKLKTLDLSSN 201 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC---CCCTTCCEEECCSS
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc---cccccCCEEECCCC
Confidence 8888888877777888888899999999988877776664 688999999999988744 333 34788999999999
Q ss_pred cCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCc
Q 039564 229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH 308 (485)
Q Consensus 229 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 308 (485)
.++ .+|.. +.. ++.|+.|++++|.++
T Consensus 202 ~l~-~l~~~-~~~----------------------------------------------------l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 202 KLA-FMGPE-FQS----------------------------------------------------AAGVTWISLRNNKLV 227 (317)
T ss_dssp CCC-EECGG-GGG----------------------------------------------------GTTCSEEECTTSCCC
T ss_pred cCC-cchhh-hcc----------------------------------------------------cCcccEEECcCCccc
Confidence 888 44433 222 334888999999998
Q ss_pred ccCchhhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCC-cCcccCcc
Q 039564 309 GEIPTSIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNN-WFSGQIPQ 361 (485)
Q Consensus 309 ~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~ 361 (485)
.+|..+..+++|+.|++++|++. +.+|..+..+++|+.|+++++ .+.+..|.
T Consensus 228 -~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp -EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred -chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 57778899999999999999998 788889999999999999855 56655443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3e-27 Score=237.65 Aligned_cols=234 Identities=26% Similarity=0.209 Sum_probs=132.7
Q ss_pred CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEc
Q 039564 17 HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV 96 (485)
Q Consensus 17 ~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l 96 (485)
+|++|+|++|.+.+..|..|. .+++|++|+|++|.+++..+ +..+.. |++|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~---l~~l~~-L~~L~Ls~N~l---------------- 92 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD---LESLST-LRTLDLNNNYV---------------- 92 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE---CTTCTT-CCEEECCSSEE----------------
T ss_pred CccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc---cccCCC-CCEEEecCCcC----------------
Confidence 566666666666554445555 55666666666665554322 111111 24444443333
Q ss_pred cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEcc
Q 039564 97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176 (485)
Q Consensus 97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 176 (485)
++. | ..++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 93 -----~~l-~----~~~~L~~L~L~~N~l~~~~~~----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 93 -----QEL-L----VGPSIETLHAANNNISRVSCS----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp -----EEE-E----ECTTCCEEECCSSCCCCEEEC----------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred -----CCC-C----CCCCcCEEECcCCcCCCCCcc----------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 321 1 125566666666655533221 12456666666666665555555566666666666
Q ss_pred CCcccCCcChhhh-CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564 177 NNQIIDTFPAWLG-TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY 255 (485)
Q Consensus 177 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~ 255 (485)
+|.+++..|..+. .+++|++|++++|.+.+. +.. ..+++
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~---~~l~~------------------------------------ 192 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---VVFAK------------------------------------ 192 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC---CCCTT------------------------------------
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccc-ccc---ccCCC------------------------------------
Confidence 6666555555443 455555555555555432 111 12334
Q ss_pred hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564 256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 335 (485)
|+.|++++|.+++ +|..+..+++|+.|+|++|++++ +
T Consensus 193 -----------------------------------------L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 193 -----------------------------------------LKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp -----------------------------------------CCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred -----------------------------------------CCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-c
Confidence 4444555555543 33336677888888888888884 6
Q ss_pred CccccCCCCCCEEECCCCcCc-ccCcccccCCCCCCEEecc
Q 039564 336 PSCFGDLTKLESLDLSNNWFS-GQIPQQLTGLTFLEFFNVS 375 (485)
Q Consensus 336 p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~ 375 (485)
|..+..+++|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 667788888888888888887 5667777777777777765
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.6e-25 Score=208.62 Aligned_cols=226 Identities=19% Similarity=0.149 Sum_probs=145.3
Q ss_pred EEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEc
Q 039564 72 TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDM 151 (485)
Q Consensus 72 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~L 151 (485)
+++..+..++......++++++|++++|.+++..+..|.++++|++|++++|.+++..+. .|..+++|++|++
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L 83 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-------AYQSLSHLSTLIL 83 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-------TTTTCTTCCEEEC
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-------HccCCcCCCEEEC
Confidence 445555555433333355667777777777655555677777777777777777633332 3344567777777
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc-cCCccccCCCCCccEEEccCccC
Q 039564 152 SHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE-IKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 152 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+ ..+++|++|++++|.+
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCC
T ss_pred CCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCC
Confidence 77777766666677777777777777777665555566666666666666666542 34444 4455566666665555
Q ss_pred CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310 (485)
Q Consensus 231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 310 (485)
+ +.
T Consensus 162 ~-----------------------------------------------------------------------------~~ 164 (276)
T 2z62_A 162 Q-----------------------------------------------------------------------------SI 164 (276)
T ss_dssp C-----------------------------------------------------------------------------EE
T ss_pred C-----------------------------------------------------------------------------cC
Confidence 4 33
Q ss_pred CchhhccCCCCC----EEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564 311 IPTSIANLKGLQ----VLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 311 ~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 384 (485)
.+..+..+++|+ +|++++|++++..+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 333333333344 7888888887555555543 478888888888886666667888888888888888876554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.8e-27 Score=236.22 Aligned_cols=246 Identities=19% Similarity=0.148 Sum_probs=188.4
Q ss_pred CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564 88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC 167 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 167 (485)
+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|++++|.+++..+ .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L~~L~Ls~N~l~~l~~-----~ 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNYVQELLV-----G 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---------CTTCTTCCEEECCSSEEEEEEE-----C
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---------cccCCCCCEEEecCCcCCCCCC-----C
Confidence 4578888888888887777889999999999999998885443 3456889999999999885432 3
Q ss_pred CCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhccccccee
Q 039564 168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247 (485)
Q Consensus 168 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 247 (485)
++|++|++++|.+++..+. .+++|+.|++++|.+.+..|..+ ..+++|+.|++++|.+++..|..+...
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------ 167 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------ 167 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG------
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh------
Confidence 7899999999998876654 46789999999999987777766 678899999999999886555443222
Q ss_pred ccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCc
Q 039564 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA 327 (485)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 327 (485)
++.|+.|+|++|.+++. |. ...+++|++|+|+
T Consensus 168 ----------------------------------------------l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls 199 (487)
T 3oja_A 168 ----------------------------------------------SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (487)
T ss_dssp ----------------------------------------------TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred ----------------------------------------------CCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence 33488899999999865 32 3468999999999
Q ss_pred CceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc-cCCCC-CCCCCCCCCCC-------C
Q 039564 328 NNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG-PIPEA-NQFPTFDSSSF-------D 398 (485)
Q Consensus 328 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~-~~~~~l~~~~~-------~ 398 (485)
+|++++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+ .+|.. ..++.+..+.. .
T Consensus 200 ~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~ 277 (487)
T 3oja_A 200 SNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (487)
T ss_dssp SSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccC
Confidence 999996554 58899999999999999995 77889999999999999999983 32221 12222222223 2
Q ss_pred CCCCCCCCCC
Q 039564 399 GNSGLCGKPL 408 (485)
Q Consensus 399 ~n~~lc~~~~ 408 (485)
++++.|.++.
T Consensus 278 ~~~~~c~~~~ 287 (487)
T 3oja_A 278 QNEEECTVPT 287 (487)
T ss_dssp SSSCCCSSTT
T ss_pred CCcccccCCc
Confidence 6788887754
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.4e-27 Score=224.97 Aligned_cols=253 Identities=23% Similarity=0.244 Sum_probs=200.3
Q ss_pred CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc-ccCCCccccCcccccCCCCccEEEccCCcccccCCccc--
Q 039564 88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS-GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-- 164 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-- 164 (485)
..+|++|++++|.+ .+|..+... |+.|++++|.+. ..+|..+......+..+++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45678888888888 677766554 899999999984 34554332000111246899999999999999899886
Q ss_pred cCCCCCcEEEccCCcccCCcChhhhCC-----CCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCC--hh
Q 039564 165 ANCAVLEIIDLGNNQIIDTFPAWLGTL-----SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP--SK 237 (485)
Q Consensus 165 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~ 237 (485)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.++ ..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999887 7778877 999999999999997777777 789999999999999875321 11
Q ss_pred h-hcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc--cCc-h
Q 039564 238 Y-FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG--EIP-T 313 (485)
Q Consensus 238 ~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p-~ 313 (485)
. +. .++.|+.|++++|.+++ .++ .
T Consensus 195 ~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 195 LCPL----------------------------------------------------KFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp SCTT----------------------------------------------------SCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhc----------------------------------------------------cCCCCCEEECCCCcCcchHHHHHH
Confidence 0 01 13459999999999983 222 3
Q ss_pred hhccCCCCCEEeCcCceecccCC-ccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCC
Q 039564 314 SIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTF 392 (485)
Q Consensus 314 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 392 (485)
.+..+++|++|++++|++++..| ..+..+++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |....++.+
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L 298 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQV 298 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCC
Confidence 45678999999999999998775 45677899999999999999 7787766 8999999999999976 655667778
Q ss_pred CCCCCCCCCCC
Q 039564 393 DSSSFDGNSGL 403 (485)
Q Consensus 393 ~~~~~~~n~~l 403 (485)
..+++.+|+..
T Consensus 299 ~~L~L~~N~l~ 309 (312)
T 1wwl_A 299 GNLSLKGNPFL 309 (312)
T ss_dssp EEEECTTCTTT
T ss_pred CEEeccCCCCC
Confidence 88889998754
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.4e-25 Score=204.19 Aligned_cols=209 Identities=20% Similarity=0.191 Sum_probs=148.0
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEE
Confidence 356666666666665555566666666666666666665555566666666666666666664444444 556666666
Q ss_pred EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303 (485)
Q Consensus 224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls 303 (485)
++++|.+.+ ++...+.. ++.|+.|+++
T Consensus 106 ~l~~n~l~~-~~~~~~~~----------------------------------------------------l~~L~~L~l~ 132 (276)
T 2z62_A 106 VAVETNLAS-LENFPIGH----------------------------------------------------LKTLKELNVA 132 (276)
T ss_dssp ECTTSCCCC-STTCCCTT----------------------------------------------------CTTCCEEECC
T ss_pred ECCCCCccc-cCchhccc----------------------------------------------------CCCCCEEECc
Confidence 666666652 22111111 2336777777
Q ss_pred CCcCccc-CchhhccCCCCCEEeCcCceecccCCccccCCCCCC----EEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564 304 SNGFHGE-IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE----SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN 378 (485)
Q Consensus 304 ~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 378 (485)
+|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|.
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~ 211 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQ 211 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSC
T ss_pred CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCc
Confidence 7777653 578899999999999999999988888888877777 899999999976665554 4589999999999
Q ss_pred ccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 379 LTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 379 l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
+++..+.. ..++.+..+++.+||+.|+|+.
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred eeecCHhHhcccccccEEEccCCcccccCCc
Confidence 99765543 4577888999999999999863
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=7.6e-25 Score=205.09 Aligned_cols=204 Identities=26% Similarity=0.307 Sum_probs=141.2
Q ss_pred hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhh
Q 039564 109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188 (485)
Q Consensus 109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 188 (485)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence 556778888888888877 6665431 5678888888888877777788888888888888887665442
Q ss_pred hCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc
Q 039564 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF 268 (485)
Q Consensus 189 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 268 (485)
+.+++|++|++++|.+. .+|..+ ..+++|++|++++|.++ .++...|..
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~~--------------------------- 122 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDVSFNRLT-SLPLGALRG--------------------------- 122 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEECCSSCCC-CCCSSTTTT---------------------------
T ss_pred CCCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEECCCCcCc-ccCHHHHcC---------------------------
Confidence 57778888888888776 556555 56777777777777776 343322222
Q ss_pred ccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEE
Q 039564 269 YGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348 (485)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 348 (485)
++.|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 123 -------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 123 -------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp -------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred -------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 2236667777777765555556677777777777777775555556667777777
Q ss_pred ECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 349 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
++++|+++ .+|..+...+.|+.+++++|++.+
T Consensus 178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77777777 566666666677777777777654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.5e-24 Score=199.86 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=143.0
Q ss_pred CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCC
Q 039564 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE 193 (485)
Q Consensus 114 ~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 193 (485)
..+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---------TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCEEEccCCCCC-ccCCCCC---------CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 3566777777776 5664331 45777777777777555566777777777777777776666666677777
Q ss_pred CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcC
Q 039564 194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP 273 (485)
Q Consensus 194 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+..
T Consensus 87 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~-------------------------------- 131 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLK-SLPPRVFDS-------------------------------- 131 (270)
T ss_dssp CCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCC-CCCTTTTTT--------------------------------
T ss_pred CCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccC-eeCHHHhCc--------------------------------
Confidence 7777777777764444444 56677777777777776 333222222
Q ss_pred cccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCC
Q 039564 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353 (485)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 353 (485)
++.|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 132 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 132 --------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 233677777777777555556778888888888888888766667888888888888888
Q ss_pred cCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 354 WFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 354 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
++++..+..|..+++|+.|++++|++.+..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 888666667788888888888888877644
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5e-24 Score=197.76 Aligned_cols=206 Identities=23% Similarity=0.256 Sum_probs=175.8
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
...+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+ ..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEE
Confidence 35789999999999 5776654 689999999999998888889999999999999999985444444 678999999
Q ss_pred EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303 (485)
Q Consensus 224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls 303 (485)
++++|.+. .++...+.. ++.|+.|+++
T Consensus 91 ~l~~n~l~-~~~~~~~~~----------------------------------------------------l~~L~~L~l~ 117 (270)
T 2o6q_A 91 WVTDNKLQ-ALPIGVFDQ----------------------------------------------------LVNLAELRLD 117 (270)
T ss_dssp ECCSSCCC-CCCTTTTTT----------------------------------------------------CSSCCEEECC
T ss_pred ECCCCcCC-cCCHhHccc----------------------------------------------------ccCCCEEECC
Confidence 99999998 555443332 3348999999
Q ss_pred CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
+|.+++..+..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 99999888888999999999999999999777777999999999999999999877778999999999999999998755
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCC
Q 039564 384 PEA-NQFPTFDSSSFDGNSGLCGKP 407 (485)
Q Consensus 384 p~~-~~~~~l~~~~~~~n~~lc~~~ 407 (485)
+.. ..++.+..+.+.+||+.|+|+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HHHhccccCCCEEEecCCCeeCCCc
Confidence 543 356788889999999999986
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.2e-23 Score=196.97 Aligned_cols=205 Identities=23% Similarity=0.234 Sum_probs=176.4
Q ss_pred hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CC
Q 039564 11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PT 89 (485)
Q Consensus 11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~ 89 (485)
.++++++++.++++++.++ .+|..+. +++++|++++|.+++..+. .+..+ ..|++|++++|.+++..+.. ++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~N~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLA-TLMPY-TRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGG-GGTTC-TTCCEEECTTSCCCEEECCSCCT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC----CCCCEEEcCCCcCCccCHH-HhhcC-CCCCEEECCCCccCcccCCCCCC
Confidence 4678899999999999999 7787654 6899999999999987654 34444 44599999999998765544 89
Q ss_pred CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564 90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 169 (485)
+|++|++++|.+. .+|..+..+++|++|++++|++++..| ..|..+++|++|++++|.+++..+..|..+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-------GALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS-------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH-------HHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 9999999999998 688889999999999999999994433 34556799999999999999877778899999
Q ss_pred CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCcc
Q 039564 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN 233 (485)
Q Consensus 170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 233 (485)
|++|++++|+++...+..|..+++|++|++++|.+. .+|..+ ...++|+.+++++|++...
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~--~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF--FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT--TTTCCCSEEECCSCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh--cccccCCeEEeCCCCccCc
Confidence 999999999999888888899999999999999998 777776 5678999999999998754
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.7e-24 Score=201.07 Aligned_cols=179 Identities=22% Similarity=0.231 Sum_probs=111.7
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+ ..+++|++|
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 138 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYL 138 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEE
Confidence 4555555555555431 244555555555555555555444445555555555555555553333333 445555555
Q ss_pred EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303 (485)
Q Consensus 224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls 303 (485)
++++|.++ .++...+.. ++.|+.|+++
T Consensus 139 ~L~~n~l~-~~~~~~~~~----------------------------------------------------l~~L~~L~l~ 165 (272)
T 3rfs_A 139 NLAHNQLQ-SLPKGVFDK----------------------------------------------------LTNLTELDLS 165 (272)
T ss_dssp ECCSSCCC-CCCTTTTTT----------------------------------------------------CTTCCEEECC
T ss_pred ECCCCccC-ccCHHHhcc----------------------------------------------------CccCCEEECC
Confidence 55555555 232222211 2225666666
Q ss_pred CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
+|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGB
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcc
Confidence 6666655555677888899999999998877777788889999999999987743 456888889999999888
Q ss_pred CCC
Q 039564 384 PEA 386 (485)
Q Consensus 384 p~~ 386 (485)
|..
T Consensus 239 p~~ 241 (272)
T 3rfs_A 239 RNS 241 (272)
T ss_dssp BCT
T ss_pred cCc
Confidence 864
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.3e-24 Score=197.29 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 205 (485)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 33444444444443333333333444444444444443333333333344444444444333
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=5.6e-24 Score=201.64 Aligned_cols=229 Identities=19% Similarity=0.206 Sum_probs=158.8
Q ss_pred CCcEEEccCCcccccC-Ch--hhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC----c
Q 039564 90 KTRHYLVSKNNLTGEI-PS--WICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP----K 162 (485)
Q Consensus 90 ~L~~L~l~~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~----~ 162 (485)
.++.+.+.++.+.... .. .+..+++|++|++++|.+++..|..+.. ..+++|++|++++|.+++..+ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-----ATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-----CCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-----ccCCCCCEEEeecccccchhhhhHHH
Confidence 3555666665554211 11 1223466888888888877776654310 345778888888888876444 3
Q ss_pred cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc--cCCccccCCCCCccEEEccCccCCccCChh---
Q 039564 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE--IKEHKMECGFPKLRIVDLSNNSFTGNLPSK--- 237 (485)
Q Consensus 163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--- 237 (485)
.+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+. ++.......+++|++|++++|.++ .++..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence 445678888888888888777777888888888888888887542 222222246788888888888886 33321
Q ss_pred hhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhcc
Q 039564 238 YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIAN 317 (485)
Q Consensus 238 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 317 (485)
.+.. ++.|+.|++++|.+.+..|..+..
T Consensus 219 l~~~----------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 219 LAAA----------------------------------------------------GVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp HHHH----------------------------------------------------TCCCSSEECTTSCCCCCCCSCCSS
T ss_pred HHhc----------------------------------------------------CCCCCEEECCCCCCCccchhhHHh
Confidence 1111 334888888888888777777666
Q ss_pred C---CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 318 L---KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 318 l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6 68999999999998 6677664 7899999999999854 43 6778899999999998863
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.3e-25 Score=216.09 Aligned_cols=245 Identities=18% Similarity=0.220 Sum_probs=171.6
Q ss_pred CCCCcEEEccCCcccccCC----hhhcCCCCCCEEEcccC---cccccCCCccccCcccccCCCCccEEEccCCcccc--
Q 039564 88 PTKTRHYLVSKNNLTGEIP----SWICNLSSLYILDLSDN---NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-- 158 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~-- 158 (485)
+++|++|++++|.+....+ ..+..+++|++|+|++| ++.+.+|..+..+...+..+++|++|+|++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4566777777776665433 33667888888888885 44455666665555556677888888888888876
Q ss_pred --cCCccccCCCCCcEEEccCCcccCCcChhhh----CC---------CCCCEEEeeccccc-cccC---CccccCCCCC
Q 039564 159 --RIPKSLANCAVLEIIDLGNNQIIDTFPAWLG----TL---------SELDILVLQSNNFH-GEIK---EHKMECGFPK 219 (485)
Q Consensus 159 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~~~l~~ 219 (485)
.++..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|.+. +.++ ..+ ..+++
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~ 188 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF--QSHRL 188 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH--HHCTT
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH--HhCCC
Confidence 4666777888888888888887644333333 33 78888888888876 2333 223 45678
Q ss_pred ccEEEccCccCCccCChhhhc-ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccccccccc
Q 039564 220 LRIVDLSNNSFTGNLPSKYFQ-CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298 (485)
Q Consensus 220 L~~L~l~~n~l~~~~~~~~~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~ 298 (485)
|+.|++++|.+...-...... .+ ..++.|+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l-------------------------------------------------~~~~~L~ 219 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGL-------------------------------------------------AYCQELK 219 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTG-------------------------------------------------GGCTTCC
T ss_pred cCEEECcCCCCCHhHHHHHHHHHh-------------------------------------------------hcCCCcc
Confidence 888888888776210000000 00 1134588
Q ss_pred EEEcCCCcCc----ccCchhhccCCCCCEEeCcCceeccc----CCccccC--CCCCCEEECCCCcCcc----cCcccc-
Q 039564 299 AVILSSNGFH----GEIPTSIANLKGLQVLSLANNNLEGH----IPSCFGD--LTKLESLDLSNNWFSG----QIPQQL- 363 (485)
Q Consensus 299 ~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~- 363 (485)
.|+|++|.++ +.+|..+..+++|++|+|++|++++. ++..+.. +++|+.|+|++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 8899999885 56778888899999999999998765 4566633 8899999999999987 477766
Q ss_pred cCCCCCCEEeccCCcccccC
Q 039564 364 TGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 364 ~~l~~L~~L~l~~N~l~~~~ 383 (485)
.++++|+.|++++|++++..
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTS
T ss_pred hcCCCceEEEccCCcCCcch
Confidence 66899999999999998655
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.7e-24 Score=209.87 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=47.3
Q ss_pred ccEEEcCCCcCccc----Cchhhcc-CCCCCEEeCcCceecccCC----ccccCCCCCCEEECCCCcCccc-------Cc
Q 039564 297 LTAVILSSNGFHGE----IPTSIAN-LKGLQVLSLANNNLEGHIP----SCFGDLTKLESLDLSNNWFSGQ-------IP 360 (485)
Q Consensus 297 L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p 360 (485)
|+.|++++|.+.+. ++..+.. .++|++|+|++|++++..+ ..+..+++|+.|++++|.+.+. ++
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 55666666665542 3333444 2466666666666654333 2234556666666666664322 22
Q ss_pred ccccCCCCCCEEeccCCccccc
Q 039564 361 QQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 361 ~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
..+..+++|+.|++++|++...
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCGG
T ss_pred HHhccCCceEEEecCCCcCCCc
Confidence 3445566666677777766543
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=4e-22 Score=192.11 Aligned_cols=242 Identities=16% Similarity=0.103 Sum_probs=180.3
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccE-E
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGI-I 149 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~-L 149 (485)
++++.++++++.++...++++++|++++|+|+...+.+|.++++|++|+|++|.+.+.+|. .+|.+++++++ +
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT------TSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh------hHhhcchhhhhhh
Confidence 5677777777754434467888888888888865566899999999999999998767775 45666777665 6
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeecc-ccccccCCccccCCCCCccEEEccCc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSN-NFHGEIKEHKMECGFPKLRIVDLSNN 228 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 228 (485)
.+.+|+++...|..|..+++|++|++++|++....+..+....++..+++.++ .+. .++...+......++.|++++|
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence 67789999888889999999999999999998877777777788889998765 454 4544322222346889999999
Q ss_pred cCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCC-CcC
Q 039564 229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS-NGF 307 (485)
Q Consensus 229 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l 307 (485)
.++ .++...|. ...++.+++++ |.+
T Consensus 165 ~i~-~i~~~~f~-----------------------------------------------------~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 165 GIQ-EIHNSAFN-----------------------------------------------------GTQLDELNLSDNNNL 190 (350)
T ss_dssp CCC-EECTTSST-----------------------------------------------------TEEEEEEECTTCTTC
T ss_pred ccc-CCChhhcc-----------------------------------------------------ccchhHHhhccCCcc
Confidence 998 56654332 12378888875 556
Q ss_pred cccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
....+..|..+++|++|||++|+++...+.. +.+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 6444456899999999999999999544444 45677777666644446774 788999999999765
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.6e-22 Score=181.78 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=81.0
Q ss_pred CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCc-ccccCCCccccCcccccCCCCccEEEccC-CcccccCCccc
Q 039564 87 PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNN-LSGELPRCLGNFSDTFMNGSNLGIIDMSH-NLLQGRIPKSL 164 (485)
Q Consensus 87 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~ 164 (485)
.+.++++|++++|.+++..+..|.++++|++|++++|. ++ .+|. ..|..+++|++|++++ |.+++..+..|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~------~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLES------HSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECT------TTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCH------hHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 44566666666666665555567777777777777775 55 3332 2334456677777776 66665555666
Q ss_pred cCCCCCcEEEccCCcccCCcChhhhCCCCCC---EEEeecc-ccccccCCccccCCCCCcc-EEEccCccCC
Q 039564 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELD---ILVLQSN-NFHGEIKEHKMECGFPKLR-IVDLSNNSFT 231 (485)
Q Consensus 165 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~ 231 (485)
..+++|++|++++|.+++ +|. |..+++|+ +|++++| .+.+..+..+ ..+++|+ .|++++|.++
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc
Confidence 666677777777766655 333 55666666 6666666 5553333333 4555666 6666666555
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.8e-22 Score=182.29 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=119.6
Q ss_pred CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCC
Q 039564 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE 193 (485)
Q Consensus 114 ~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 193 (485)
..++++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCeEEecCCCCcc-ccCCCCC---------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 3556666666666 5554331 45666666666666555556666666666666666666655555666666
Q ss_pred CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcC
Q 039564 194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP 273 (485)
Q Consensus 194 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 85 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N--------------------------------------------- 117 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVF--DHLTQLDKLYLGGN--------------------------------------------- 117 (251)
T ss_dssp CCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSS---------------------------------------------
T ss_pred CCEEECCCCcccccChhHh--cccCCCCEEEcCCC---------------------------------------------
Confidence 6666666666653333333 34455555555554
Q ss_pred cccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCC
Q 039564 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353 (485)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 353 (485)
.+++..+..+..+++|++|+|++|++++..+..|..+++|+.|++++|
T Consensus 118 --------------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 118 --------------------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp --------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 444344445667788888888888888666667888888888888888
Q ss_pred cCcccCcccccCCCCCCEEeccCCccccc
Q 039564 354 WFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 354 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
++++..+..|..+++|+.|++++|++++.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88877777788888888888888888765
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=6.3e-26 Score=234.88 Aligned_cols=355 Identities=12% Similarity=0.026 Sum_probs=159.8
Q ss_pred CCCCCCEEECCCCcCCCCCCcccccCC-CCC-CcEEEccCCc-CcCcCCCCCCCCCCCCccEEEcCCCcccccCC-----
Q 039564 14 QQKHLKALDLSSNKLHGNIPKWLLNPS-MQN-FSYLNLSKNS-LTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP----- 85 (485)
Q Consensus 14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~-l~~-L~~L~Ls~n~-l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~----- 85 (485)
.+++|++|+|++|.+++..+..+. . +++ |++|++++|. ++.. ..+.+...++.|++|++++|.+++...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~--~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLA--KARADDLETLKLDKCSGFTTD-GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHH--HHHGGGCCEEEEESCEEEEHH-HHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHH--HhccccCcEEECcCCCCcCHH-HHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 567777777777766655454444 2 233 7777776664 1110 000111123344777777777654421
Q ss_pred --CCCCCCcEEEccCCccc----ccCChhhcCCCCCCEEEcccCcccccCCCccccC--------------------ccc
Q 039564 86 --APPTKTRHYLVSKNNLT----GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF--------------------SDT 139 (485)
Q Consensus 86 --~~~~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--------------------~~~ 139 (485)
..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..++.+ ...
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 12677777777777765 2334445567777777777776652 33222221 011
Q ss_pred ccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccccCCCC
Q 039564 140 FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFP 218 (485)
Q Consensus 140 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 218 (485)
+..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|++.++...+.++... ..++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~ 342 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA--QYCK 342 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH--HHCT
T ss_pred hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH--HhCC
Confidence 222233333333332211 334444445555555555555432222 223445555555555222111111111 2345
Q ss_pred CccEEEccC-----------ccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEee----e
Q 039564 219 KLRIVDLSN-----------NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS----N 283 (485)
Q Consensus 219 ~L~~L~l~~-----------n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~ 283 (485)
+|+.|++++ +.+++.........+++|+.+++.....-... ...++.....+..+.+. .
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~------~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES------LESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH------HHHHHHHCCSCCEEEEEECSCC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH------HHHHHhhCCCCcEEEEeecCCC
Confidence 555555552 33332111122233444444444211100000 00000001123333332 1
Q ss_pred cCccc--------ccccccccccEEEcCCCc--CcccCchhhc-cCCCCCEEeCcCceecc-cCCccccCCCCCCEEECC
Q 039564 284 KGQML--------SYEKIPYILTAVILSSNG--FHGEIPTSIA-NLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLS 351 (485)
Q Consensus 284 ~~~~~--------~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls 351 (485)
+.... .....++.|+.|++++|. +++..+..+. .+++|++|+|++|++++ .++..+..+++|+.|+++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 11111 001124556666665432 4433333333 25666666666666654 233344556666666666
Q ss_pred CCcCccc-CcccccCCCCCCEEeccCCcccc
Q 039564 352 NNWFSGQ-IPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 352 ~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
+|.+++. ++.....+++|+.|++++|+++.
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6665533 23333456666666666666553
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.9e-24 Score=208.13 Aligned_cols=266 Identities=18% Similarity=0.178 Sum_probs=140.3
Q ss_pred EEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCC----CCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564 20 ALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQ----HPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL 95 (485)
Q Consensus 20 ~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~ 95 (485)
++++++|.+++.+|+.+. ..++|++|++++|.+++..+ . .+......|++|++++|.+++
T Consensus 2 ~~~ls~n~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~------------- 65 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS--IPHGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGF------------- 65 (362)
T ss_dssp EEECCCCTTCCHHHHHHT--SCTTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGG-------------
T ss_pred ccccccccchHHHHHHHh--CCCCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCH-------------
Confidence 467888888877777665 45568888888888776533 1 112222133566666655554
Q ss_pred ccCCcccccCChhhcCC-----CCCCEEEcccCcccccCCCccccCcccccCC-CCccEEEccCCcccccCCccc----c
Q 039564 96 VSKNNLTGEIPSWICNL-----SSLYILDLSDNNLSGELPRCLGNFSDTFMNG-SNLGIIDMSHNLLQGRIPKSL----A 165 (485)
Q Consensus 96 l~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~----~ 165 (485)
..+..+..+ ++|++|++++|.+++..+..++. .+..+ ++|++|++++|.+++..+..+ .
T Consensus 66 --------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 134 (362)
T 3goz_A 66 --------KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK---TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134 (362)
T ss_dssp --------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH---HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT
T ss_pred --------HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH---HHHhCCCCccEEECcCCcCCcHHHHHHHHHHH
Confidence 333333332 55555555555555333332221 12223 455555555555554333322 2
Q ss_pred C-CCCCcEEEccCCcccCCc----ChhhhCCC-CCCEEEeeccccccccCCccc--cCCC-CCccEEEccCccCCccCCh
Q 039564 166 N-CAVLEIIDLGNNQIIDTF----PAWLGTLS-ELDILVLQSNNFHGEIKEHKM--ECGF-PKLRIVDLSNNSFTGNLPS 236 (485)
Q Consensus 166 ~-l~~L~~L~Ls~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~--~~~l-~~L~~L~l~~n~l~~~~~~ 236 (485)
. .++|++|++++|.+++.. +..+..++ +|++|++++|.+.+..+..+. ...+ ++|+.|++++|.+.+....
T Consensus 135 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence 2 245666666666555322 22233443 666666666665543332220 0123 3666666666666531111
Q ss_pred hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCc----
Q 039564 237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP---- 312 (485)
Q Consensus 237 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p---- 312 (485)
.+...+. ...+.|+.|++++|.+++..+
T Consensus 215 ~l~~~l~------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 215 ELAYIFS------------------------------------------------SIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp HHHHHHH------------------------------------------------HSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred HHHHHHh------------------------------------------------cCCCCceEEECcCCCCCcHHHHHHH
Confidence 1100000 002236777777777765433
Q ss_pred hhhccCCCCCEEeCcCceeccc-------CCccccCCCCCCEEECCCCcCcccCc
Q 039564 313 TSIANLKGLQVLSLANNNLEGH-------IPSCFGDLTKLESLDLSNNWFSGQIP 360 (485)
Q Consensus 313 ~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l~~~~p 360 (485)
..+..+++|++|+|++|.+.+. ++..+..+++|+.||+++|.+....+
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2345667888888888874432 23456677888888888888876533
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.5e-22 Score=182.78 Aligned_cols=196 Identities=23% Similarity=0.289 Sum_probs=112.7
Q ss_pred CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCc-ccccCCccccCCCCCcEEEccC-CcccCCcChhhhCC
Q 039564 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL-LQGRIPKSLANCAVLEIIDLGN-NQIIDTFPAWLGTL 191 (485)
Q Consensus 114 ~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l 191 (485)
+|++|++++|++++ +|. ..|..+++|++|++++|. +++..+..|..+++|++|++++ |.++...+..|..+
T Consensus 32 ~l~~L~l~~n~l~~-i~~------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETHLRT-IPS------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCCCSE-ECT------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCCcceE-ECH------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 67777777777763 332 234445677777777775 6655555667777777777776 67766655666677
Q ss_pred CCCCEEEeeccccccccCCccccCCCCCcc---EEEccCc-cCCccCChhhhcccccceeccccchhhhhcccccccccc
Q 039564 192 SELDILVLQSNNFHGEIKEHKMECGFPKLR---IVDLSNN-SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFD 267 (485)
Q Consensus 192 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 267 (485)
++|++|++++|.+.+ +|. + ..+++|+ +|++++| .+. .++...|..+
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l------------------------- 154 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQGL------------------------- 154 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTTT-------------------------
T ss_pred CCCCEEeCCCCCCcc-ccc-c--ccccccccccEEECCCCcchh-hcCcccccch-------------------------
Confidence 777777777777663 444 3 4555555 6666666 555 3333222221
Q ss_pred cccCcCcccceEEeeecCccccccccccccc-EEEcCCCcCcccCchhhccCCCCCEEeCcCce-ecccCCccccCC-CC
Q 039564 268 FYGYFPHYYYSLTMSNKGQMLSYEKIPYILT-AVILSSNGFHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDL-TK 344 (485)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~ 344 (485)
+.|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++
T Consensus 155 ---------------------------~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 155 ---------------------------CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp ---------------------------BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ---------------------------hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 2255 5666666665222222333 556666666663 654445556666 66
Q ss_pred CCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 207 L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 207 PSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 6666666666653 3322 4455566665554
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.1e-24 Score=225.61 Aligned_cols=354 Identities=11% Similarity=0.017 Sum_probs=200.0
Q ss_pred CCEEECCCCc-CCC-CCCcccccCCCCCCcEEEccCCcCcCcCCC--CCCCCCCCCccEEEcCCCcccccCC----C---
Q 039564 18 LKALDLSSNK-LHG-NIPKWLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPWSSGEFTLDLSSNFLQGPIP----A--- 86 (485)
Q Consensus 18 L~~L~Ls~n~-~~~-~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~lL~~L~l~~n~l~~~~~----~--- 86 (485)
|++|+|++|. +.. .++.... .+++|++|+|++|.+++.... +.+....+.|++|++++|.+++... .
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 6666666664 211 1111122 456666666666665433110 0011223334666666666652211 1
Q ss_pred CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc---ccCCCcc----------------ccCcccccCCCCcc
Q 039564 87 PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS---GELPRCL----------------GNFSDTFMNGSNLG 147 (485)
Q Consensus 87 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l----------------~~l~~~~~~l~~L~ 147 (485)
.+++|++|++++|.+.+ +|..+..+++|+.|+++..... +..+..+ ..++..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 15666666666666653 4555566666666666532111 0000000 01112344567899
Q ss_pred EEEccCCcccccCC-ccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec-----------cccccccCCccccC
Q 039564 148 IIDMSHNLLQGRIP-KSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS-----------NNFHGEIKEHKMEC 215 (485)
Q Consensus 148 ~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~ 215 (485)
+|++++|.+++... ..+..+++|++|+++++.....++..+..+++|++|++++ +.+++.....+ ..
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-Hh
Confidence 99999998765443 3457888999999984433233344456788899999983 44443211111 13
Q ss_pred CCCCccEEEccCccCCccCChhhhcccccceeccccchh---hhhcccccccccc-cccCcCcccceEEeeecC--ccc-
Q 039564 216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR---YMRNFLSSYFSFD-FYGYFPHYYYSLTMSNKG--QML- 288 (485)
Q Consensus 216 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--~~~- 288 (485)
.+++|++|+++.|.+++..+..+...+++|+.+++..+. .+...... .+.. .... -..+..+++..+. ...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~~~~-~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIG-CKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHHHHHHH-CTTCCEEEEECCGGGCCHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHHHHHHh-CCCCCEEEEecCCCCccHH
Confidence 578888898888888765554444457777777775322 11100000 0000 0000 1234555554311 111
Q ss_pred ---ccccccccccEEEcCCCcCccc-CchhhccCCCCCEEeCcCceeccc-CCccccCCCCCCEEECCCCcCcccCcccc
Q 039564 289 ---SYEKIPYILTAVILSSNGFHGE-IPTSIANLKGLQVLSLANNNLEGH-IPSCFGDLTKLESLDLSNNWFSGQIPQQL 363 (485)
Q Consensus 289 ---~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 363 (485)
.....++.|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++..+..+++|+.|++++|+++......+
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 1122367899999999999863 455668899999999999998754 44455679999999999999987644433
Q ss_pred -cCCCCCCEEeccCC
Q 039564 364 -TGLTFLEFFNVSHN 377 (485)
Q Consensus 364 -~~l~~L~~L~l~~N 377 (485)
..++.+....+..+
T Consensus 534 ~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 534 QMARPYWNIELIPSR 548 (592)
T ss_dssp GGCCTTEEEEEECCC
T ss_pred HHhCCCcEEEEecCc
Confidence 45777766666554
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=6.4e-22 Score=187.00 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=47.9
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 376 (485)
|+.|++++|.+++ ++. +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++
T Consensus 153 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 153 LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (308)
T ss_dssp CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccC
Confidence 5555555555553 222 5566666777777766664332 5666667777777776664332 56666777777777
Q ss_pred Ccccc
Q 039564 377 NNLTG 381 (485)
Q Consensus 377 N~l~~ 381 (485)
|++++
T Consensus 227 N~i~~ 231 (308)
T 1h6u_A 227 QTITN 231 (308)
T ss_dssp EEEEC
T ss_pred Ceeec
Confidence 76654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=191.67 Aligned_cols=229 Identities=21% Similarity=0.216 Sum_probs=177.5
Q ss_pred CCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccc--cCCCCCcEEEccCCcccCCcC----
Q 039564 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL--ANCAVLEIIDLGNNQIIDTFP---- 185 (485)
Q Consensus 112 l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~---- 185 (485)
...++.+.+.++.+....-..+ ..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGA----LRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHH----HHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHH----HHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 3457888888877652211011 011123679999999999999999888 899999999999999987555
Q ss_pred hhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCcc--CC-hhhhcccccceeccccchhhhhccccc
Q 039564 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN--LP-SKYFQCWNAMKFVNASQLRYMRNFLSS 262 (485)
Q Consensus 186 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~ 262 (485)
..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. ++ ..++.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------------------- 194 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMAALCPH---------------------- 194 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTT----------------------
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhHHHhhh----------------------
Confidence 345679999999999999987777777 7899999999999997632 11 11011
Q ss_pred ccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCch----hhccCCCCCEEeCcCceecccCCcc
Q 039564 263 YFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT----SIANLKGLQVLSLANNNLEGHIPSC 338 (485)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~ 338 (485)
.++.|+.|++++|+++ .++. .+..+++|++|+|++|++++..|..
T Consensus 195 ------------------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 195 ------------------------------KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp ------------------------------SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred ------------------------------cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 1345888999999997 3333 3578899999999999999887877
Q ss_pred ccCC---CCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 039564 339 FGDL---TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403 (485)
Q Consensus 339 ~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~l 403 (485)
+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |....++.+..+.+.+|+..
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 7776 69999999999999 6777664 8999999999999974 44456788888999999764
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-21 Score=178.82 Aligned_cols=181 Identities=24% Similarity=0.259 Sum_probs=146.6
Q ss_pred CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCC
Q 039564 89 TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168 (485)
Q Consensus 89 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 168 (485)
...++++++++.++ .+|..+. ++++.|++++|.+++..|.. |..+++|++|++++|.+++..+..|..++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT-------FRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT-------TTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH-------hcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 35678999999998 5776654 68999999999999655543 45569999999999999988888899999
Q ss_pred CCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceec
Q 039564 169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248 (485)
Q Consensus 169 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l 248 (485)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~-~--------------- 145 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ-S--------------- 145 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-C---------------
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCC-c---------------
Confidence 99999999999998888899999999999999999985544444 56777777777777665 2
Q ss_pred cccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcC
Q 039564 249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN 328 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (485)
..+..+..+++|++|+|++
T Consensus 146 -------------------------------------------------------------~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 146 -------------------------------------------------------------IPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp -------------------------------------------------------------CCTTTTTTCTTCCEEECCS
T ss_pred -------------------------------------------------------------cCHHHcCcCcCCCEEECCC
Confidence 2333456677888888888
Q ss_pred ceecccCCccccCCCCCCEEECCCCcCccc
Q 039564 329 NNLEGHIPSCFGDLTKLESLDLSNNWFSGQ 358 (485)
Q Consensus 329 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 358 (485)
|++++..+..+..+++|+.|++++|.+...
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 888876677788888888888888888754
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.7e-23 Score=200.84 Aligned_cols=248 Identities=17% Similarity=0.174 Sum_probs=150.9
Q ss_pred cEEEcCCCcccccCCCCC--CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccccc-CCCccccCcccccCCCCcc
Q 039564 71 FTLDLSSNFLQGPIPAPP--TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE-LPRCLGNFSDTFMNGSNLG 147 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~~~~~l~~L~ 147 (485)
+.++++++.+.......+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|.. +..+++|+
T Consensus 50 ~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-------~~~~~~L~ 121 (336)
T 2ast_B 50 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-------LSQCSKLQ 121 (336)
T ss_dssp SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-------HTTBCCCS
T ss_pred eeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-------HhhCCCCC
Confidence 555555555442111112 5566666666666644443 44567777777777766533 3322 33346777
Q ss_pred EEEccCCcccccCCccccCCCCCcEEEccCC-cccC-CcChhhhCCCCCCEEEeecc-ccccc-cCCccccCCCC-CccE
Q 039564 148 IIDMSHNLLQGRIPKSLANCAVLEIIDLGNN-QIID-TFPAWLGTLSELDILVLQSN-NFHGE-IKEHKMECGFP-KLRI 222 (485)
Q Consensus 148 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~ 222 (485)
+|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+.+. ++..+ ..++ +|++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQ 199 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCE
Confidence 7777777776666666777777777777777 4544 24555667777777777777 66543 33333 4566 7777
Q ss_pred EEccCcc--CC-ccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564 223 VDLSNNS--FT-GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299 (485)
Q Consensus 223 L~l~~n~--l~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 299 (485)
|++++|. ++ +.++. .+. .++.|+.
T Consensus 200 L~l~~~~~~~~~~~l~~-~~~----------------------------------------------------~~~~L~~ 226 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLST-LVR----------------------------------------------------RCPNLVH 226 (336)
T ss_dssp EECCSCGGGSCHHHHHH-HHH----------------------------------------------------HCTTCSE
T ss_pred EEeCCCcccCCHHHHHH-HHh----------------------------------------------------hCCCCCE
Confidence 7777773 32 11111 011 1334778
Q ss_pred EEcCCCc-CcccCchhhccCCCCCEEeCcCce-ecccCCccccCCCCCCEEECCCCcCcccCcccccCC-CCCCEEeccC
Q 039564 300 VILSSNG-FHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL-TFLEFFNVSH 376 (485)
Q Consensus 300 L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~ 376 (485)
|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.. .+..+ ..+..|++++
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINC 302 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEec
Confidence 8888887 666677778888888899988885 32222235778888999999888 4432 22222 2356666888
Q ss_pred CcccccCCC
Q 039564 377 NNLTGPIPE 385 (485)
Q Consensus 377 N~l~~~~p~ 385 (485)
|.+++..|.
T Consensus 303 n~l~~~~~~ 311 (336)
T 2ast_B 303 SHFTTIARP 311 (336)
T ss_dssp CCSCCTTCS
T ss_pred ccCccccCC
Confidence 888877664
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.7e-23 Score=199.39 Aligned_cols=229 Identities=17% Similarity=0.227 Sum_probs=144.5
Q ss_pred cEEEcCCCcccccCCCC--CCCCcEEEccCCccccc-CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCcc
Q 039564 71 FTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGE-IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLG 147 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~ 147 (485)
+.|++++|.+.+..+.. +++|++|++++|.+.+. ++..+..+++|++|++++|.+++..|..++ .+++|+
T Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-------~~~~L~ 145 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-------KNSNLV 145 (336)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-------TCTTCS
T ss_pred eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-------cCCCCC
Confidence 55555555554443333 45666666666666544 666677777777777777777655554333 347777
Q ss_pred EEEccCC-ccccc-CCccccCCCCCcEEEccCC-cccCC-cChhhhCCC-CCCEEEeeccc--cc-cccCCccccCCCCC
Q 039564 148 IIDMSHN-LLQGR-IPKSLANCAVLEIIDLGNN-QIIDT-FPAWLGTLS-ELDILVLQSNN--FH-GEIKEHKMECGFPK 219 (485)
Q Consensus 148 ~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~l~~ 219 (485)
+|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. +. +.++..+ ..+++
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~ 223 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPN 223 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTT
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCC
Confidence 7777777 56542 5555667777888888877 76543 455667777 78888888773 43 2344433 45777
Q ss_pred ccEEEccCcc-CCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccccccccc
Q 039564 220 LRIVDLSNNS-FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298 (485)
Q Consensus 220 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~ 298 (485)
|+.|++++|. +++..+.. +.. ++.|+
T Consensus 224 L~~L~l~~~~~l~~~~~~~-l~~----------------------------------------------------l~~L~ 250 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQE-FFQ----------------------------------------------------LNYLQ 250 (336)
T ss_dssp CSEEECTTCTTCCGGGGGG-GGG----------------------------------------------------CTTCC
T ss_pred CCEEeCCCCCcCCHHHHHH-HhC----------------------------------------------------CCCCC
Confidence 8888888777 44332221 111 23477
Q ss_pred EEEcCCCc-CcccCchhhccCCCCCEEeCcCceecccCCccccCC-CCCCEEECCCCcCcccCcccccC
Q 039564 299 AVILSSNG-FHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL-TKLESLDLSNNWFSGQIPQQLTG 365 (485)
Q Consensus 299 ~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 365 (485)
.|++++|. +.......+..+++|++|++++| ++. ..+..+ .++..|++++|.+++..|..++.
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 77777774 33222235778899999999998 432 233333 34777789999999888877664
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=9.4e-24 Score=206.57 Aligned_cols=189 Identities=21% Similarity=0.218 Sum_probs=119.6
Q ss_pred cCCCCCCEEEcccCccccc----CCCccccCcccccCCCCccEEEccCCcccccCCcccc----CC---------CCCcE
Q 039564 110 CNLSSLYILDLSDNNLSGE----LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA----NC---------AVLEI 172 (485)
Q Consensus 110 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l---------~~L~~ 172 (485)
..+++|++|+|++|.+++. +|.. +..+++|++|++++|.+++..+..+. .+ ++|++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDF-------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHH-------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHH-------HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 5566666666666666531 2222 23346666666666666533332222 22 67777
Q ss_pred EEccCCccc-CCcC---hhhhCCCCCCEEEeecccccc-----ccCCccccCCCCCccEEEccCccCCc----cCChhhh
Q 039564 173 IDLGNNQII-DTFP---AWLGTLSELDILVLQSNNFHG-----EIKEHKMECGFPKLRIVDLSNNSFTG----NLPSKYF 239 (485)
Q Consensus 173 L~Ls~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~ 239 (485)
|++++|.++ ...+ ..+..+++|++|++++|.+.. ..+..+ ..+++|+.|++++|.++. .++.. +
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l 240 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAIA-L 240 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHHH-G
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHHH-H
Confidence 777777775 2333 355667777777777777652 222233 456777888888777641 22211 1
Q ss_pred cccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc----Cchhh
Q 039564 240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE----IPTSI 315 (485)
Q Consensus 240 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~ 315 (485)
. .++.|+.|+|++|.+++. ++..+
T Consensus 241 ~----------------------------------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 241 K----------------------------------------------------SWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp G----------------------------------------------------GCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred c----------------------------------------------------cCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 1 123477788888887754 45566
Q ss_pred c--cCCCCCEEeCcCceecc----cCCccc-cCCCCCCEEECCCCcCcccCc
Q 039564 316 A--NLKGLQVLSLANNNLEG----HIPSCF-GDLTKLESLDLSNNWFSGQIP 360 (485)
Q Consensus 316 ~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p 360 (485)
. .+++|++|+|++|.+++ .+|..+ ..+++|++|++++|.+++..+
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 3 38999999999999987 477776 668999999999999997664
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.3e-21 Score=188.46 Aligned_cols=246 Identities=20% Similarity=0.236 Sum_probs=169.8
Q ss_pred cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC-ccccCCCCC
Q 039564 92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP-KSLANCAVL 170 (485)
Q Consensus 92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L 170 (485)
++++.++++++ .+|..+ .+++++|+|++|+++ .+|. ++|.++++|++|+|++|.+.+.+| ..|.+++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQK------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECT------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCH------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 56777788887 567655 357888888888887 5554 446667888888888888765554 457777776
Q ss_pred cE-EEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCc-cCCccCChhhhcccccceec
Q 039564 171 EI-IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN-SFTGNLPSKYFQCWNAMKFV 248 (485)
Q Consensus 171 ~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~l 248 (485)
.+ +.+++|++....|.+|..+++|++|++++|.+....+..+ ....++..+++.++ .+. .++...|..
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~-~l~~~~f~~------- 151 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIH-TIERNSFVG------- 151 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCC-EECTTSSTT-------
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccc-cccccchhh-------
Confidence 64 5666788877777888888888888888888874444333 44556777777653 444 444332221
Q ss_pred cccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcC
Q 039564 249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN 328 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (485)
....++.|++++|+++ .++.......+|++|++++
T Consensus 152 --------------------------------------------~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 152 --------------------------------------------LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp --------------------------------------------SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTT
T ss_pred --------------------------------------------cchhhhhhcccccccc-CCChhhccccchhHHhhcc
Confidence 1234888999999999 4555555667899999986
Q ss_pred -ceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 329 -NNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK 406 (485)
Q Consensus 329 -N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 406 (485)
|.++...++.|..+++|+.||+++|+|+...+..| ..|+.|.+.++.-...+|....++.+..+.+ .+++.|.+
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c~~ 261 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHCCA 261 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHHHH
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccccc
Confidence 56664445678999999999999999995444444 4566666655554456676566666666655 46666643
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.2e-21 Score=183.32 Aligned_cols=198 Identities=22% Similarity=0.275 Sum_probs=161.6
Q ss_pred hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCC
Q 039564 12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTK 90 (485)
Q Consensus 12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~ 90 (485)
+.++++|++|++++|.+. .+| .+. .+++|++|++++|.+++..+ +..+. .|++|++++|.+++...-. +++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~--~l~~L~~L~L~~n~i~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQ--YLNNLIGLELKDNQITDLAP---LKNLT-KITELELSGNPLKNVSAIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGG---GTTCC-SCCEEECCSCCCSCCGGGTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhh--ccCCCCEEEccCCcCCCChh---HccCC-CCCEEEccCCcCCCchhhcCCCC
Confidence 456889999999999998 456 577 79999999999999987643 34444 4599999999998753222 899
Q ss_pred CcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCC
Q 039564 91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL 170 (485)
Q Consensus 91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 170 (485)
|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..+++|
T Consensus 109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 175 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP--------LAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175 (308)
T ss_dssp CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--------GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc--------ccCCCCccEEEccCCcCCCChh--hcCCCCC
Confidence 9999999999985 443 8999999999999999984 332 3456899999999999985433 8899999
Q ss_pred cEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564 171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237 (485)
Q Consensus 171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 237 (485)
++|++++|.+++..+ +..+++|++|++++|.+.+..+ + ..+++|+.|++++|.++ ..|..
T Consensus 176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~l~~N~i~-~~~~~ 235 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L--ANTSNLFIVTLTNQTIT-NQPVF 235 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G--TTCTTCCEEEEEEEEEE-CCCEE
T ss_pred CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--c--cCCCCCCEEEccCCeee-cCCee
Confidence 999999999977654 8899999999999999985543 4 67899999999999997 45543
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=6.2e-21 Score=169.67 Aligned_cols=152 Identities=22% Similarity=0.191 Sum_probs=91.4
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+.++++++.++......++++++|++++|.+++..+..|.++++|++|++++|.++ .+|. ..|..+++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPN------GVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccCh------hhcCCCCCcCEEE
Confidence 45555555555444334556666666666666555555666777777777777666 3332 2234456677777
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
+++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCB
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCe
Confidence 77777665555556666677777777776666555556666666666666666664333333 4556666666666654
Q ss_pred C
Q 039564 231 T 231 (485)
Q Consensus 231 ~ 231 (485)
.
T Consensus 161 ~ 161 (208)
T 2o6s_A 161 D 161 (208)
T ss_dssp C
T ss_pred e
Confidence 4
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=3.7e-23 Score=214.19 Aligned_cols=351 Identities=13% Similarity=0.043 Sum_probs=194.8
Q ss_pred hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCC-cCcCcCCCCCCCCCCCCccEEEcCCCcccccC------
Q 039564 12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN-SLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI------ 84 (485)
Q Consensus 12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~------ 84 (485)
...+++|++|+|++|.+++..+..+.. .+++|++|++++| .++.... +.+...++.|++|++++|.+++..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 456788999999998887766665542 4788899999888 4443111 123323444588888888876533
Q ss_pred -CCCCCCCcEEEccCCc--ccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCc-----
Q 039564 85 -PAPPTKTRHYLVSKNN--LTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL----- 155 (485)
Q Consensus 85 -~~~~~~L~~L~l~~n~--l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~----- 155 (485)
+..+++|++|++++|. +.. .++..+..+++|++|++++|...+.+|..+. .+++|++|+++.+.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~-------~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ-------RAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH-------HCTTCSEEECSBCCCCCCH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh-------cCCcceEcccccccCccch
Confidence 2236788888888886 221 1222234568888888888722112332222 22444444433221
Q ss_pred ---------------------cc----ccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccC
Q 039564 156 ---------------------LQ----GRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIK 209 (485)
Q Consensus 156 ---------------------i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 209 (485)
+. +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.....
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 11 1233333356777777777776543222 22446777777777776 321111
Q ss_pred CccccCCCCCccEEEccC---------ccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEE
Q 039564 210 EHKMECGFPKLRIVDLSN---------NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLT 280 (485)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (485)
..+. ..+++|+.|++++ +.+++.....+...+++|+.+.+.......... ..+....+.+..+.
T Consensus 331 ~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~------~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 331 EVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL------ITIARNRPNMTRFR 403 (594)
T ss_dssp HHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH------HHHHHHCTTCCEEE
T ss_pred HHHH-HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH------HHHHhhCCCcceeE
Confidence 1111 2356677776632 333322112222334555555332211100000 00000001233344
Q ss_pred eee------cCccc--------ccccccccccEEEcCCCcCcccCchhhcc-CCCCCEEeCcCceecccCCccc-cCCCC
Q 039564 281 MSN------KGQML--------SYEKIPYILTAVILSSNGFHGEIPTSIAN-LKGLQVLSLANNNLEGHIPSCF-GDLTK 344 (485)
Q Consensus 281 ~~~------~~~~~--------~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 344 (485)
+.. +.... .....++.|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 431 11110 0122356799999977 666555555555 8889999999998876555544 66889
Q ss_pred CCEEECCCCcCcccCcc-cccCCCCCCEEeccCCccc
Q 039564 345 LESLDLSNNWFSGQIPQ-QLTGLTFLEFFNVSHNNLT 380 (485)
Q Consensus 345 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~ 380 (485)
|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999999988654433 4455889999999999874
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.9e-20 Score=164.46 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEE
Confidence 455666666666654444455566666666666666655545555555666666666665553333223 344555555
Q ss_pred EccCccCC
Q 039564 224 DLSNNSFT 231 (485)
Q Consensus 224 ~l~~n~l~ 231 (485)
++++|.++
T Consensus 106 ~L~~N~l~ 113 (208)
T 2o6s_A 106 ALNTNQLQ 113 (208)
T ss_dssp ECCSSCCC
T ss_pred EcCCCcCc
Confidence 55555544
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.6e-23 Score=216.97 Aligned_cols=376 Identities=15% Similarity=0.088 Sum_probs=241.8
Q ss_pred hhhhCCCCCCEEECCCCcCC---CCCCcc------------cccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEE
Q 039564 10 NFLKQQKHLKALDLSSNKLH---GNIPKW------------LLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLD 74 (485)
Q Consensus 10 ~~~~~l~~L~~L~Ls~n~~~---~~~p~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~ 74 (485)
..+..+++|++|+++++... +..|.. .. .+++|++|++++|.+++.... .+....+.|++|+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH--hCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEe
Confidence 36778999999999998632 122322 22 578999999999988764332 2322244559999
Q ss_pred cCCC-ccccc-CCC---CCCCCcEEEccCCcccccCChhhc----CCCCCCEEEcccCcccccCC-CccccCcccccCCC
Q 039564 75 LSSN-FLQGP-IPA---PPTKTRHYLVSKNNLTGEIPSWIC----NLSSLYILDLSDNNLSGELP-RCLGNFSDTFMNGS 144 (485)
Q Consensus 75 l~~n-~l~~~-~~~---~~~~L~~L~l~~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~~p-~~l~~l~~~~~~l~ 144 (485)
+++| .++.. ++. .+++|++|++++|.+++..+..+. .+++|++|++++|. . .++ ..+. ..+..++
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~---~l~~~~~ 211 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALE---RLVTRCP 211 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHH---HHHHHCT
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHH---HHHHhCC
Confidence 9999 55432 111 289999999999998865554443 67799999999996 1 222 1221 1123458
Q ss_pred CccEEEccCCcccccCCccccCCCCCcEEEccCCc--------------------------cc----CCcChhhhCCCCC
Q 039564 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ--------------------------II----DTFPAWLGTLSEL 194 (485)
Q Consensus 145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------------------------l~----~~~~~~~~~l~~L 194 (485)
+|++|++++|...+.++..+..+++|++|+++.+. +. ..++..+..+++|
T Consensus 212 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L 291 (594)
T 2p1m_B 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL 291 (594)
T ss_dssp TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTC
T ss_pred CCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCC
Confidence 99999999993333467777788888888865442 11 1233334467999
Q ss_pred CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccch--------hhhhccccccccc
Q 039564 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQL--------RYMRNFLSSYFSF 266 (485)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~--------~~~~~~~~~~~~~ 266 (485)
++|++++|.+.+.....+ ...+++|+.|++++| +.......+...+++|+.+++..+ ..+... +.
T Consensus 292 ~~L~L~~~~l~~~~l~~~-~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-----~l 364 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-----GL 364 (594)
T ss_dssp CEEECTTCCCCHHHHHHH-HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-----HH
T ss_pred CEEEccCCCCCHHHHHHH-HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH-----HH
Confidence 999999999764432221 157899999999988 442222233445788888876321 111100 00
Q ss_pred cccc-CcCcccceEEeeecCccccc----ccccccccEEEcC--C----CcCccc-----CchhhccCCCCCEEeCcCce
Q 039564 267 DFYG-YFPHYYYSLTMSNKGQMLSY----EKIPYILTAVILS--S----NGFHGE-----IPTSIANLKGLQVLSLANNN 330 (485)
Q Consensus 267 ~~~~-~~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~ 330 (485)
..+. .. ..+..+....+...... ...++.|+.|+++ + +.+++. ++..+..+++|+.|+|++ .
T Consensus 365 ~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 365 VSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 0000 01 23444544444443221 2236789999998 4 556521 223367789999999988 6
Q ss_pred ecccCCccccC-CCCCCEEECCCCcCcccCcccc-cCCCCCCEEeccCCcccccCCC--CCCCCCCCCCCCCCCCC
Q 039564 331 LEGHIPSCFGD-LTKLESLDLSNNWFSGQIPQQL-TGLTFLEFFNVSHNNLTGPIPE--ANQFPTFDSSSFDGNSG 402 (485)
Q Consensus 331 l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~ 402 (485)
+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.... ...++.++.+++.+|+.
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 66555555555 8999999999999987655544 6689999999999998643221 12356677777777654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=8e-20 Score=185.25 Aligned_cols=136 Identities=30% Similarity=0.395 Sum_probs=79.4
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
++|++++|.+++..+..+++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. ++ .+|+.|+
T Consensus 62 ~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---------~~L~~L~ 126 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---------ASLKHLD 126 (571)
T ss_dssp SEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---------TTCCEEE
T ss_pred cEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---------cCCCEEE
Confidence 44555555444422222445555555555555 344 335666677777766663 554 21 1666777
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+.+ +|. + . ++|+.|++++|.+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEALDVSTNLL 192 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCEEECCSSCC
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCEEECcCCCC
Confidence 77777664 444 45667777777777755 333 45677777777777764 555 4 2 6777777777777
Q ss_pred CccCCh
Q 039564 231 TGNLPS 236 (485)
Q Consensus 231 ~~~~~~ 236 (485)
+ .+|.
T Consensus 193 ~-~lp~ 197 (571)
T 3cvr_A 193 E-SLPA 197 (571)
T ss_dssp S-SCCC
T ss_pred C-chhh
Confidence 6 5553
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=183.41 Aligned_cols=183 Identities=22% Similarity=0.337 Sum_probs=149.9
Q ss_pred CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEc
Q 039564 17 HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV 96 (485)
Q Consensus 17 ~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l 96 (485)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.|+.+. .....|++|++++|.|++. |....+|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip------~~l~~L~~L~Ls~N~l~~i-p~l~~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP------ELPASLEYLDACDNRLSTL-PELPASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCC-CCCCTTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc------cccCCCCEEEccCCCCCCc-chhhcCCCEEEC
Confidence 99999999999995 777653 68999999999999653 2345569999999999984 445559999999
Q ss_pred cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEcc
Q 039564 97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176 (485)
Q Consensus 97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 176 (485)
++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ +|. |. ++|++|+|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 9999996 666 6899999999999998 4775 24799999999999996 666 66 899999999
Q ss_pred CCcccCCcChhhhCCCCC-------CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564 177 NNQIIDTFPAWLGTLSEL-------DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237 (485)
Q Consensus 177 ~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 237 (485)
+|.++. +|. |.. +| +.|++++|.+. .+|..+ ..+++|+.|++++|.+++.+|..
T Consensus 189 ~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 189 TNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI--LSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp SSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGG--GGSCTTEEEECCSSSCCHHHHHH
T ss_pred CCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHH--hcCCCCCEEEeeCCcCCCcCHHH
Confidence 999974 444 544 67 99999999998 678776 45999999999999999766654
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=160.11 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=107.7
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII 149 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L 149 (485)
+++++++|.++......+..+++|++++|.+++..+ ..|..+++|++|++++|.+++..|. .|..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-------~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-------AFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-------HhCCCCCCCEE
Confidence 455555555554333334455666666666665433 3467777788888887777744332 34455778888
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (485)
++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+.+..|..+ ..+++|+.|++++|.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANP 164 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCC
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcC
Confidence 888888876666677778888888888888877777777778888888888888776666666 667788888888888
Q ss_pred CCccCChh
Q 039564 230 FTGNLPSK 237 (485)
Q Consensus 230 l~~~~~~~ 237 (485)
+.+..+..
T Consensus 165 l~c~c~l~ 172 (220)
T 2v70_A 165 FNCNCYLA 172 (220)
T ss_dssp EECSGGGH
T ss_pred CcCCCchH
Confidence 77655433
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.5e-19 Score=174.76 Aligned_cols=104 Identities=24% Similarity=0.231 Sum_probs=56.3
Q ss_pred CEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc-CCCCCcEEEccCCcccCCcChhhhCCCCC
Q 039564 116 YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA-NCAVLEIIDLGNNQIIDTFPAWLGTLSEL 194 (485)
Q Consensus 116 ~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 194 (485)
++++++++.++ .+|..+. ..++.|+|++|.+++..+..|. .+++|++|+|++|.+++..+..|..+++|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcC-ccCccCC---------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence 45555555555 4554321 3355566666666655555554 55666666666666655555555556666
Q ss_pred CEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
++|+|++|.+.+..+..+ ..+++|+.|++++|.+.
T Consensus 91 ~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCccc
Confidence 666666665553333333 44555555555555554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.9e-19 Score=158.00 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=111.8
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+.++++++.++......++++++|++++|.+++..+..|..+++|++|+|++|.+++..|.. |..+++|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-------~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-------FQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-------TTTCSSCCEEE
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-------hhCCcCCCEEE
Confidence 45666666665444334566777777777777666667777888888888888877555543 44457888888
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
|++|.++...+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCc
Confidence 88888885555567778888888888888877777778888888888888888875555555 6678888888888887
Q ss_pred CccCC
Q 039564 231 TGNLP 235 (485)
Q Consensus 231 ~~~~~ 235 (485)
.....
T Consensus 165 ~c~c~ 169 (220)
T 2v9t_B 165 ICDCH 169 (220)
T ss_dssp ECSGG
T ss_pred CCCCc
Confidence 65433
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7.2e-19 Score=157.46 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=44.3
Q ss_pred hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 315 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 3455666666666666666666666666677777777777766555666667777777777776654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7.6e-19 Score=157.30 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=61.3
Q ss_pred EEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379 (485)
Q Consensus 300 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 379 (485)
|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 33333333334444566777788888888888777777788888888888888888877778888888888888888888
Q ss_pred cccCC
Q 039564 380 TGPIP 384 (485)
Q Consensus 380 ~~~~p 384 (485)
++..+
T Consensus 166 ~c~c~ 170 (220)
T 2v70_A 166 NCNCY 170 (220)
T ss_dssp ECSGG
T ss_pred cCCCc
Confidence 76543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=162.32 Aligned_cols=142 Identities=22% Similarity=0.326 Sum_probs=79.7
Q ss_pred cEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564 71 FTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII 149 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L 149 (485)
++|++++|.+++..+- .+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus 71 ~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~~--------~l~~l~~L~~L 139 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESL 139 (291)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCCEE
T ss_pred CEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-Ch--------hhcCCCCCCEE
Confidence 4444444444433321 14555555555555543 22 35666666666666666652 21 12334666666
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (485)
++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. + ..+++|+.|++++|.
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-L--AGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-G--TTCTTCSEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-h--ccCCCCCEEECcCCc
Confidence 6666666643 456666666666666666655443 5666666666666666653 332 3 456666666666666
Q ss_pred CC
Q 039564 230 FT 231 (485)
Q Consensus 230 l~ 231 (485)
+.
T Consensus 212 i~ 213 (291)
T 1h6t_A 212 CL 213 (291)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2e-18 Score=161.59 Aligned_cols=79 Identities=30% Similarity=0.462 Sum_probs=52.8
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 376 (485)
|+.|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence 55555555555533 346667777777777777775443 6777777777777777774 343 67777777777777
Q ss_pred Ccccc
Q 039564 377 NNLTG 381 (485)
Q Consensus 377 N~l~~ 381 (485)
|+++.
T Consensus 210 n~i~~ 214 (291)
T 1h6t_A 210 QECLN 214 (291)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 77764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4.3e-18 Score=153.42 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=126.3
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+.++++++.++......+++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|. ..|..+++|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~------~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV------GVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcCh------hhcccCCCcCEEE
Confidence 67777777777555555788888888888888877888999999999999999987 5553 3355668999999
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
+++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCB
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCc
Confidence 9999999777777889999999999999996 567778899999999999999985554445 6789999999999998
Q ss_pred CccCC
Q 039564 231 TGNLP 235 (485)
Q Consensus 231 ~~~~~ 235 (485)
.+..+
T Consensus 172 ~c~c~ 176 (229)
T 3e6j_A 172 DCECR 176 (229)
T ss_dssp CTTBG
T ss_pred cCCcc
Confidence 86543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.7e-18 Score=153.86 Aligned_cols=68 Identities=22% Similarity=0.206 Sum_probs=43.1
Q ss_pred hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383 (485)
Q Consensus 315 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 383 (485)
+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 445566666666666666 55566666666666666666666555555666666777777766666543
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=166.51 Aligned_cols=154 Identities=24% Similarity=0.170 Sum_probs=104.8
Q ss_pred cEEEcCCCcccccCCC----CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCc
Q 039564 71 FTLDLSSNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNL 146 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L 146 (485)
+.|+|++|.|++..+. .+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+ ..|..+++|
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L 114 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE-------FLFSDLQAL 114 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-------TTTTTCTTC
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH-------HHhCCCcCC
Confidence 4444444444443332 24566666666666666666678888888888888888874333 334556888
Q ss_pred cEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhh---hCCCCCCEEEeeccccccccCCccccCCCCC--cc
Q 039564 147 GIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL---GTLSELDILVLQSNNFHGEIKEHKMECGFPK--LR 221 (485)
Q Consensus 147 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--L~ 221 (485)
++|+|++|.+++..+..|..+++|++|+|++|.++...+..| ..+++|+.|+|++|.+.+..+..+ ..++. ++
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l~~~~l~ 192 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL--QKLPAWVKN 192 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH--HHSCHHHHT
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh--hhccHhhcc
Confidence 888888888887777888888888888888888877665555 568888888888888874333333 44555 47
Q ss_pred EEEccCccCCcc
Q 039564 222 IVDLSNNSFTGN 233 (485)
Q Consensus 222 ~L~l~~n~l~~~ 233 (485)
.|++++|.+...
T Consensus 193 ~l~l~~N~~~C~ 204 (361)
T 2xot_A 193 GLYLHNNPLECD 204 (361)
T ss_dssp TEECCSSCEECC
T ss_pred eEEecCCCccCC
Confidence 788888888743
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.2e-18 Score=176.60 Aligned_cols=142 Identities=22% Similarity=0.329 Sum_probs=75.3
Q ss_pred cEEEcCCCcccccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564 71 FTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII 149 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L 149 (485)
++|+|++|.+++..+-. +++|++|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ +| .+..+++|+.|
T Consensus 68 ~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~--------~l~~l~~L~~L 136 (605)
T 1m9s_A 68 TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESL 136 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCSEE
T ss_pred CEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc--------cccCCCccCEE
Confidence 44444444444333211 4445555555555542 22 45556666666666665552 21 12334566666
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (485)
+|++|.+++. ..+..+++|++|+|++|.+.+..| +..+++|+.|+|++|.+.+ ++ .+ ..+++|+.|++++|.
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l--~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-AL--AGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GG--TTCTTCSEEECCSEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HH--ccCCCCCEEEccCCc
Confidence 6666666533 455566666666666666655444 5566666666666666653 22 23 455666666666666
Q ss_pred CC
Q 039564 230 FT 231 (485)
Q Consensus 230 l~ 231 (485)
+.
T Consensus 209 l~ 210 (605)
T 1m9s_A 209 CL 210 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 55
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=5.7e-18 Score=173.57 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=141.6
Q ss_pred hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCC
Q 039564 12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTK 90 (485)
Q Consensus 12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~ 90 (485)
+..+++|+.|++++|.+. .+| .+. .+++|+.|+|++|.++++.+ +..+..+ +.|+|++|.+++...-. +++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~--~l~~L~~L~Ls~N~l~~~~~---l~~l~~L-~~L~Ls~N~l~~l~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQ--YLPNVTKLFLNGNKLTDIKP---LTNLKNL-GWLFLDENKIKDLSSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGG--GCTTCCEEECTTSCCCCCGG---GGGCTTC-CEEECCSSCCCCCTTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHc--cCCCCCEEEeeCCCCCCChh---hccCCCC-CEEECcCCCCCCChhhccCCC
Confidence 567899999999999998 455 466 79999999999999988643 4444444 99999999998754322 899
Q ss_pred CcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCC
Q 039564 91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL 170 (485)
Q Consensus 91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 170 (485)
|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++. . .+..+++|+.|+|++|.+++..| +..+++|
T Consensus 111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--G-------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--h-------hhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 9999999999985 3 4588999999999999998843 2 34566899999999999997665 8899999
Q ss_pred cEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc
Q 039564 171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE 207 (485)
Q Consensus 171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 207 (485)
++|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 178 ~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 9999999999775 3588999999999999998743
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1e-17 Score=154.30 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=103.4
Q ss_pred CCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcE
Q 039564 15 QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRH 93 (485)
Q Consensus 15 l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~ 93 (485)
+.++..++++++.+.+ ++ .+. .+++|++|++++|.++.+. .+..+..+ ++|++++|.+++..+-. +++|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~--~l~~L~~L~l~~n~i~~l~---~l~~l~~L-~~L~L~~N~i~~~~~l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQK--ELSGVQNFNGDNSNIQSLA---GMQFFTNL-KELHLSHNQISDLSPLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHH--HHTTCSEEECTTSCCCCCT---TGGGCTTC-CEEECCSSCCCCCGGGTTCSSCCE
T ss_pred HHHHHHHHhcCCCccc-cc-chh--hcCcCcEEECcCCCcccch---HHhhCCCC-CEEECCCCccCCChhhccCCCCCE
Confidence 3444555555555552 22 333 4556666666666555431 22333333 66666666655544311 566666
Q ss_pred EEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEE
Q 039564 94 YLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173 (485)
Q Consensus 94 L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 173 (485)
|++++|.+++ +|.. .. ++|+.|++++|.+++ +| .+..+++|+.|++++|.+++. + .+..+++|++|
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~--------~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD--------SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL 155 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG--------GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch--------hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence 6666666663 3332 22 777788888877763 32 244557788888888887743 3 57778888888
Q ss_pred EccCCcccCCcChhhhCCCCCCEEEeeccccccc
Q 039564 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE 207 (485)
Q Consensus 174 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 207 (485)
++++|.+++. ..+..+++|+.|++++|.+...
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888888766 5577788888888888887643
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.7e-17 Score=145.99 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=48.8
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCce-ecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 375 (485)
|+.|++++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 4444444444444445556667777777777776 44 444 46677777777777777774 33 56677777777777
Q ss_pred CCccc
Q 039564 376 HNNLT 380 (485)
Q Consensus 376 ~N~l~ 380 (485)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 77765
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2e-17 Score=145.46 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=25.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccc
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 203 (485)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 444444444444443334444444444444444444433333334444444444444433
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=6.9e-21 Score=194.00 Aligned_cols=192 Identities=21% Similarity=0.214 Sum_probs=114.9
Q ss_pred hCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCc-------------CcCcCCCCCCCCCCCCccEEE-cCCC
Q 039564 13 KQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS-------------LTGFDQHPSVFPWSSGEFTLD-LSSN 78 (485)
Q Consensus 13 ~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~~lL~~L~-l~~n 78 (485)
..+++|+.|+|++|++. .+|..++ .+++|+.|++++|. +.+..+. .+..+..|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~--~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~--~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELE--SCKELQELEPENKWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH--HHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHH-hhHHHHH--HHHHHHHhccccchhhhhHHHHHHhcccccCCHH--HHHHHHhcccCcchhhc
Confidence 67899999999999998 8899998 89999999997774 3333322 222333336676 5554
Q ss_pred ccc-------------ccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCC
Q 039564 79 FLQ-------------GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSN 145 (485)
Q Consensus 79 ~l~-------------~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~ 145 (485)
.+. ... ...|+.|++++|.+++ +|. |+.+++|+.|+|++|.++ .+|..++. +++
T Consensus 421 ~~~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------l~~ 487 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKME---YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-------LRC 487 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-------CTT
T ss_pred ccchhhhhhhhcccccccC---ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-------CCC
Confidence 332 111 1245666666666653 444 666666666666666665 55544433 356
Q ss_pred ccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCc-ChhhhCCCCCCEEEeeccccccccCCcc-ccCCCCCccEE
Q 039564 146 LGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF-PAWLGTLSELDILVLQSNNFHGEIKEHK-MECGFPKLRIV 223 (485)
Q Consensus 146 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~L 223 (485)
|+.|+|++|.+++ +| .+..+++|++|+|++|.+++.. |..++.+++|+.|++++|.+.+..+... ....+++|+.|
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 6666666666663 44 5666666666666666665554 5566666666666666666654433211 01224555555
Q ss_pred E
Q 039564 224 D 224 (485)
Q Consensus 224 ~ 224 (485)
+
T Consensus 566 ~ 566 (567)
T 1dce_A 566 L 566 (567)
T ss_dssp E
T ss_pred C
Confidence 4
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.5e-18 Score=155.14 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=109.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 223 (485)
.+++.+++++|.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ + ..+++|+.|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEE
Confidence 34555556666655322 355566666666666666433 2 45666666666666666653322 3 556666666
Q ss_pred EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303 (485)
Q Consensus 224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls 303 (485)
++++|.++ .++... ...|+.|+++
T Consensus 91 ~L~~N~l~-~l~~~~-------------------------------------------------------~~~L~~L~L~ 114 (263)
T 1xeu_A 91 SVNRNRLK-NLNGIP-------------------------------------------------------SACLSRLFLD 114 (263)
T ss_dssp ECCSSCCS-CCTTCC-------------------------------------------------------CSSCCEEECC
T ss_pred ECCCCccC-CcCccc-------------------------------------------------------cCcccEEEcc
Confidence 66666665 232110 0226777777
Q ss_pred CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382 (485)
Q Consensus 304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 382 (485)
+|.+++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777764 33 477788888888888888743 3 577888888888888888865 5677888888888888888754
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.4e-18 Score=182.42 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=97.4
Q ss_pred CCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 039564 42 QNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121 (485)
Q Consensus 42 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 121 (485)
++++.|+|.+|.+..... ..++.++|+.|.|. .+++..|.+. ..+..|..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~--------~~l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ--------ALLQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCcchh--------hHhhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEECC
Confidence 456777777776665311 12355666666554 3455556665 567788889999999999
Q ss_pred cCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS 201 (485)
Q Consensus 122 ~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 201 (485)
+|.+. .+|..+.. +++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus 233 ~n~l~-~l~~~~~~-------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 233 NLQIF-NISANIFK-------YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp TSCCS-CCCGGGGG-------CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CCCCC-CCChhhcC-------CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 99988 77765543 488999999999998 78888999999999999999997 5688889999999999999
Q ss_pred cccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564 202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237 (485)
Q Consensus 202 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 237 (485)
|.+. .+|..+ ..+++|+.|+|++|.+.+.+|..
T Consensus 303 N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 303 NMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp SCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCC-ccChhh--hcCCCccEEeCCCCccCCCChHH
Confidence 9887 778776 78899999999999998766654
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=3.8e-18 Score=162.82 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=41.8
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCC-EEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEe
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQ-VLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFN 373 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 373 (485)
|+.+++.+| +....+..|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.++.+.+..|.++++|+.++
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 444444444 4434444555666666 666655 45444455666666666666666666655555666666666554
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.3e-17 Score=145.95 Aligned_cols=88 Identities=24% Similarity=0.316 Sum_probs=68.6
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 376 (485)
|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 66666666766666677777788888888888888877777788888888888888888877788888888888888888
Q ss_pred CcccccCC
Q 039564 377 NNLTGPIP 384 (485)
Q Consensus 377 N~l~~~~p 384 (485)
|++++..+
T Consensus 136 N~l~c~c~ 143 (192)
T 1w8a_A 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred CCccCcCc
Confidence 88876544
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.7e-16 Score=138.82 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=56.2
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCCh-hhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII 149 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L 149 (485)
+++++++|.++........++++|++++|.+++..+. .|..+++|++|+|++|.+++..|..+ ..+++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-------EGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-------TTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-------CCcccCCEE
Confidence 3445555444322222233444444444444433322 24455555555555555553333222 223445555
Q ss_pred EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564 150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 205 (485)
++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55555554444444444444444444444444444444444444444444444433
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=4.5e-19 Score=180.64 Aligned_cols=87 Identities=29% Similarity=0.386 Sum_probs=69.3
Q ss_pred cccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccC-cccccCCCCCCEEec
Q 039564 296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI-PQQLTGLTFLEFFNV 374 (485)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l 374 (485)
.|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 3777888888887 677788888888888888888885 56 7788888888888888888765 788888888888888
Q ss_pred cCCcccccCCC
Q 039564 375 SHNNLTGPIPE 385 (485)
Q Consensus 375 ~~N~l~~~~p~ 385 (485)
++|++++.+|.
T Consensus 541 ~~N~l~~~~~~ 551 (567)
T 1dce_A 541 QGNSLCQEEGI 551 (567)
T ss_dssp TTSGGGGSSSC
T ss_pred cCCcCCCCccH
Confidence 88888876553
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=136.91 Aligned_cols=113 Identities=24% Similarity=0.374 Sum_probs=100.9
Q ss_pred ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEec
Q 039564 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374 (485)
Q Consensus 295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 374 (485)
..++.|++++|.++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34899999999998 77889999999999999999999888889999999999999999999888889999999999999
Q ss_pred cCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564 375 SHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL 408 (485)
Q Consensus 375 ~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 408 (485)
++|.+++..+.. ..++.+..+.+.+||+.|+|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 999999755543 4577888899999999999865
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.2e-17 Score=173.35 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=113.8
Q ss_pred ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCC
Q 039564 138 DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGF 217 (485)
Q Consensus 138 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 217 (485)
+.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..+ ..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l 292 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSC 292 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGG
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCC
Confidence 44566789999999999998 77777779999999999999997 67888999999999999999998 778887 778
Q ss_pred CCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccc
Q 039564 218 PKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL 297 (485)
Q Consensus 218 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L 297 (485)
++|++|+|++|.+. .+|.. +.. ++.|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~-~~~----------------------------------------------------l~~L 318 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWE-FGN----------------------------------------------------LCNL 318 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSS-TTS----------------------------------------------------CTTC
T ss_pred CCCCEEECCCCCCC-ccChh-hhc----------------------------------------------------CCCc
Confidence 99999999999987 77754 333 2337
Q ss_pred cEEEcCCCcCcccCchhhccCCC-CCEEeCcCceecccCCccccCCCCCCEEECCCC--------cCcccCcccccCCCC
Q 039564 298 TAVILSSNGFHGEIPTSIANLKG-LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN--------WFSGQIPQQLTGLTF 368 (485)
Q Consensus 298 ~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~ 368 (485)
+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .+.+..+..+..+..
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~ 392 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAK 392 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccc
Confidence 88888888888888877655422 224778888888777753 556666666 334344444555666
Q ss_pred CCEEeccCCcccc
Q 039564 369 LEFFNVSHNNLTG 381 (485)
Q Consensus 369 L~~L~l~~N~l~~ 381 (485)
+....+++|-+.+
T Consensus 393 ~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 393 RTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------CCCG
T ss_pred cceeeeecccccc
Confidence 6667777777653
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=133.70 Aligned_cols=127 Identities=23% Similarity=0.253 Sum_probs=72.8
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+++++++|.++......++++++|++++|.++ .+|..|.++++|++|++++|.+++..+ ..|..+++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~-------~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN-------QSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH-------hHccCCCCCCEEE
Confidence 45566666555333333455566666666665 455666666677777777766663322 2234446666666
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 205 (485)
+++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666666555555666666666666666665554445555555555555555543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.5e-16 Score=133.06 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=18.7
Q ss_pred hccCCCCCEEeCcCceecccCC---ccccCCCCCCEEECCCCcCc
Q 039564 315 IANLKGLQVLSLANNNLEGHIP---SCFGDLTKLESLDLSNNWFS 356 (485)
Q Consensus 315 ~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~ 356 (485)
+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 116 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 116 LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 3344444444444444443222 23444444444444444444
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.9e-16 Score=133.46 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=99.7
Q ss_pred CCCCcEEEccCCccc-ccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccC
Q 039564 88 PTKTRHYLVSKNNLT-GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 166 (485)
+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-------NLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-------SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-------hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 567777777777776 56777777888888888888887733 2 2445578888888888888667777777
Q ss_pred CCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccC---CccccCCCCCccEEEccCccCCccCC
Q 039564 167 CAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIK---EHKMECGFPKLRIVDLSNNSFTGNLP 235 (485)
Q Consensus 167 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~ 235 (485)
+++|++|++++|.+++... ..+..+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.+. .+|
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSC-BCC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChh-hcc
Confidence 8888888888888866532 667788888888888888874433 234 67788888888888776 444
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.9e-15 Score=130.28 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=63.6
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+.+++++|.++......+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|. ..|..+++|++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD------GVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeCh------hHccCCCccCEEE
Confidence 45555555555433333445555555555555444444555666666666666555 2222 1223345555555
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 205 (485)
+++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555555444444455555555555555554444433444444444444444444
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.6e-15 Score=126.83 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=17.7
Q ss_pred CCccEEEccCCccc-ccCCccccCCCCCcEEEccCCccc
Q 039564 144 SNLGIIDMSHNLLQ-GRIPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
++|+.|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT 55 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence 34444455544444 344444444444444444444443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=8.6e-16 Score=128.47 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCCCcEEEccCCccc-ccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccC
Q 039564 88 PTKTRHYLVSKNNLT-GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166 (485)
Q Consensus 88 ~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 166 (485)
++++++|++++|.++ +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-------NLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-------TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-------hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 345666666666665 45566666666666666666666532 1 2334466666666666666555555555
Q ss_pred CCCCcEEEccCCcccCC-cChhhhCCCCCCEEEeeccccccccC---CccccCCCCCccEEEcc
Q 039564 167 CAVLEIIDLGNNQIIDT-FPAWLGTLSELDILVLQSNNFHGEIK---EHKMECGFPKLRIVDLS 226 (485)
Q Consensus 167 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~l~ 226 (485)
+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+ ..+ ..+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF--KLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH--HHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH--HHCCCcccccCC
Confidence 66666666666666543 23556666666666666666653322 123 445666666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1e-14 Score=125.77 Aligned_cols=88 Identities=26% Similarity=0.273 Sum_probs=61.1
Q ss_pred ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376 (485)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 376 (485)
|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 55555555555544445566777778888888877766666677777888888888877755555567777788888888
Q ss_pred CcccccCC
Q 039564 377 NNLTGPIP 384 (485)
Q Consensus 377 N~l~~~~p 384 (485)
|++.+..|
T Consensus 134 N~~~~~~~ 141 (177)
T 2o6r_A 134 NPWDCSCP 141 (177)
T ss_dssp SCBCCCHH
T ss_pred CCeeccCc
Confidence 87776443
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.5e-13 Score=132.23 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=28.1
Q ss_pred hhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCC-CCCEEeccCC
Q 039564 313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT-FLEFFNVSHN 377 (485)
Q Consensus 313 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N 377 (485)
..|.++++|+.++|..| ++.+...+|.++ +|+.+++++|.+....+..|..++ .+..+.+..+
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 34444455555555333 333334444444 455555555544433334444442 3444444443
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.1e-14 Score=138.87 Aligned_cols=261 Identities=11% Similarity=0.116 Sum_probs=166.9
Q ss_pred CCCCCEEECCCCcCCCCCCcccccCC-CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC------
Q 039564 15 QKHLKALDLSSNKLHGNIPKWLLNPS-MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP------ 87 (485)
Q Consensus 15 l~~L~~L~Ls~n~~~~~~p~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~------ 87 (485)
+.+++.|.++++- ....-..+. . +++|++|||++|.++........+.. ++.+.+..|.|.......
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~--~~l~~L~~LdLs~n~i~~~~~~~~~~~~---~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLR--DEFPSLKVLDISNAEIKMYSGKAGTYPN---GKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHH--HSCTTCCEEEEEEEEECCEEESSSSSGG---GCCEEECTTEECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc-cHHHHHHHH--HhhccCeEEecCcceeEEecCccccccc---cccccccccccCHHHhcccccccc
Confidence 6789999998752 211112333 3 68899999999999822111112222 366777777666554445
Q ss_pred --CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc----cccCC
Q 039564 88 --PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL----QGRIP 161 (485)
Q Consensus 88 --~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i----~~~~~ 161 (485)
+++|+++++.+ .++...+.+|.++++|+.|++.+|.+. .++. .+|..+.++..+.+..+.. .....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~------~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLP------EALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECT------TSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccch------hhhcCCCceEEecCcchhhhhccccccc
Confidence 89999999999 888777888999999999999999887 4444 4566667777777665332 21223
Q ss_pred ccccCCCCCc-EEEccCCcccCCcChhh----------------------------hCCCCCCEEEeeccccccccCC-c
Q 039564 162 KSLANCAVLE-IIDLGNNQIIDTFPAWL----------------------------GTLSELDILVLQSNNFHGEIKE-H 211 (485)
Q Consensus 162 ~~~~~l~~L~-~L~Ls~n~l~~~~~~~~----------------------------~~l~~L~~L~L~~n~l~~~~~~-~ 211 (485)
..|.++..|+ .+.+... +.++..+ ..+++|+.+++.+|.+. .++. .
T Consensus 170 ~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~a 245 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFT 245 (329)
T ss_dssp SCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTT
T ss_pred cccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhh
Confidence 4455566666 4444332 1111111 12455555555555554 2322 2
Q ss_pred cccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc
Q 039564 212 KMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE 291 (485)
Q Consensus 212 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (485)
| .++.+|+.+++.+| +. .++...|..+.
T Consensus 246 F--~~~~~L~~l~l~~n-i~-~I~~~aF~~~~------------------------------------------------ 273 (329)
T 3sb4_A 246 F--AQKKYLLKIKLPHN-LK-TIGQRVFSNCG------------------------------------------------ 273 (329)
T ss_dssp T--TTCTTCCEEECCTT-CC-EECTTTTTTCT------------------------------------------------
T ss_pred h--hCCCCCCEEECCcc-cc-eehHHHhhCCh------------------------------------------------
Confidence 2 45555555555554 33 44444444333
Q ss_pred ccccccc-EEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564 292 KIPYILT-AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350 (485)
Q Consensus 292 ~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 350 (485)
.|+ .+++.+ .++...+..|.++++|+.+++++|+++...+.+|.++++|+.++.
T Consensus 274 ----~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 ----RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ----TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ----hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 366 777776 566566788999999999999999999788889999999999874
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=6.9e-13 Score=129.20 Aligned_cols=262 Identities=14% Similarity=0.122 Sum_probs=133.6
Q ss_pred CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCC---CCCCCc
Q 039564 16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPA---PPTKTR 92 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~---~~~~L~ 92 (485)
..++.+.+.++ ++.....+|. .+ +|+.+++..+ ++.+... .|....+ +.+.+.+ .++.+... .+.+|+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~--~~-~L~~i~l~~~-i~~I~~~--aF~~~~L-~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFR--NS-QIAKVVLNEG-LKSIGDM--AFFNSTV-QEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTT--TC-CCSEEECCTT-CCEECTT--TTTTCCC-CEEECCT-TCCEECSSTTTTCTTCC
T ss_pred CCccEEEECCc-cCEehHhhcc--cC-CccEEEeCCC-ccEECHH--hcCCCCc-eEEEeCC-CccEehHHHhhCcccCC
Confidence 44555555432 3323333444 33 4666666544 4443332 3333333 5555554 23322221 145555
Q ss_pred EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564 93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI 172 (485)
Q Consensus 93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 172 (485)
.+++++|.++.....+|. ..+|+.+.+..+ ++ .++. .+|.++++|+.+++..+ ++.....+|.+ .+|+.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~------~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGS------QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECT------TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehh------hHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 555555555533333443 355555555433 33 2222 34444555555555543 33233344444 45555
Q ss_pred EEccCCcccCCcChhhhCCCCCCEEEeecccccc----ccC-CccccCCCCCccEEEccCccCCccCChhhhccccccee
Q 039564 173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG----EIK-EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247 (485)
Q Consensus 173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 247 (485)
+.+. +.+..+...+|.++++|+.+.+.+|.+.. .++ ..| .++++|+.+++.+ .+. .++...|..+
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--~~c~~L~~l~l~~-~i~-~I~~~aF~~c----- 322 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--EGCPKLARFEIPE-SIR-ILGQGLLGGN----- 322 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--TTCTTCCEECCCT-TCC-EECTTTTTTC-----
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--hCCccCCeEEeCC-ceE-EEhhhhhcCC-----
Confidence 5553 23334444555555555555555544320 111 122 4455555555552 233 3443334333
Q ss_pred ccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCc
Q 039564 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA 327 (485)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 327 (485)
..|+.+.+..+ ++......|.++ +|+.++++
T Consensus 323 -----------------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 323 -----------------------------------------------RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp -----------------------------------------------CSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred -----------------------------------------------CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 33666667444 554556778888 99999999
Q ss_pred CceecccCCccccCCC-CCCEEECCCCcCc
Q 039564 328 NNNLEGHIPSCFGDLT-KLESLDLSNNWFS 356 (485)
Q Consensus 328 ~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~ 356 (485)
+|.+....+..|.+++ .++.|.+..+.+.
T Consensus 354 ~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 354 GTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9988766777788774 7888988877654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4e-14 Score=121.84 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=33.4
Q ss_pred CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC--CCCCcEEEccCCcccccCChhhcCCCCCCE
Q 039564 40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYI 117 (485)
Q Consensus 40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 117 (485)
.+.+|++|++++|.++.+ + .+....+.|++|++++|.+++. +.. +++|++|++++|.+++..+..|..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~--~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-E--NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-C--CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-H--HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345555555555555543 1 2333332234444444444422 000 233333333333333222233344444444
Q ss_pred EEcccCcc
Q 039564 118 LDLSDNNL 125 (485)
Q Consensus 118 L~L~~n~l 125 (485)
|++++|.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 44444444
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=1.6e-16 Score=139.78 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=33.0
Q ss_pred cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHHCSEEEEEEEECC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCcCCEEECcCCcCC
Confidence 45555555555555555544 33 4555555555555555554 334333 23345555555555544
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=8.7e-14 Score=118.84 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=74.7
Q ss_pred cccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564 296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375 (485)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 375 (485)
.++.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 48888899998887778888888899999999998887777778888899999999999887666778888889999999
Q ss_pred CCcccccCC
Q 039564 376 HNNLTGPIP 384 (485)
Q Consensus 376 ~N~l~~~~p 384 (485)
+|++++..+
T Consensus 111 ~N~~~c~c~ 119 (170)
T 3g39_A 111 NNPWDCACS 119 (170)
T ss_dssp SSCBCTTBG
T ss_pred CCCCCCCch
Confidence 888876543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.7e-14 Score=120.03 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=29.7
Q ss_pred ccCCCCCEEeCcCceecccCCc--cccCCCCCCEEECCCCcCcccCcc----cccCCCCCCEEeccCCcc
Q 039564 316 ANLKGLQVLSLANNNLEGHIPS--CFGDLTKLESLDLSNNWFSGQIPQ----QLTGLTFLEFFNVSHNNL 379 (485)
Q Consensus 316 ~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l 379 (485)
..+++|++|++++|+++ .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.|++++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 34444555555555443 2332 4444555555555555554 2333 244555555555555544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.7e-13 Score=116.13 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=74.2
Q ss_pred ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEec
Q 039564 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374 (485)
Q Consensus 295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 374 (485)
..++.|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34888899999998777888888999999999999998766667788899999999999998666666888899999999
Q ss_pred cCCcccccC
Q 039564 375 SHNNLTGPI 383 (485)
Q Consensus 375 ~~N~l~~~~ 383 (485)
++|++.+..
T Consensus 113 ~~N~~~c~~ 121 (174)
T 2r9u_A 113 YNNPWDCEC 121 (174)
T ss_dssp CSSCBCTTB
T ss_pred CCCCccccc
Confidence 999887543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=6.3e-16 Score=135.94 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=27.6
Q ss_pred hhCCCCCCEEECCCCcCCCCCCc------ccccCCCCCCcEEEccCCcCcC
Q 039564 12 LKQQKHLKALDLSSNKLHGNIPK------WLLNPSMQNFSYLNLSKNSLTG 56 (485)
Q Consensus 12 ~~~l~~L~~L~Ls~n~~~~~~p~------~~~~~~l~~L~~L~Ls~n~l~~ 56 (485)
+.....++.++++.+.+.+..|. .+. .+++|++|++++|.+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~--~l~~L~~L~ls~n~l~~ 62 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS--TLKACKHLALSTNNIEK 62 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH--HTTTCSEEECSEEEESC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh--cCCCCCEEECCCCCCcc
Confidence 34456666666666666666665 555 56677777777666665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=5.2e-13 Score=113.97 Aligned_cols=104 Identities=28% Similarity=0.260 Sum_probs=55.9
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+++++++|.++......+++|++|++++|.+++..|..|.++++|++|+|++|+++ .+|. ..|..+++|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~------~~f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA------GVFDKLTQLTQLS 84 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccCh------hhccCCCCCCEEE
Confidence 45555555555433223455555555555555555556666666666666666665 3332 2233345555555
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
|++|.+++..+..|..+++|++|+|++|.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555555444444555555555555555554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1e-12 Score=112.56 Aligned_cols=104 Identities=22% Similarity=0.223 Sum_probs=58.5
Q ss_pred cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564 71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID 150 (485)
Q Consensus 71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~ 150 (485)
+.+++++|.++......+++|++|++++|.+++..|..|.++++|++|+|++|+++ .+|. ..|..+++|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~------~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPT------GVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccCh------hHhCCcchhhEEE
Confidence 45666666655333333455666666666666555666666666666666666666 3333 2233445666666
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564 151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
|++|.+++..+..|..+++|++|+|++|.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666666444444555566666666666554
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=4.1e-11 Score=116.93 Aligned_cols=313 Identities=13% Similarity=0.098 Sum_probs=201.6
Q ss_pred CCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccC
Q 039564 6 FEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI 84 (485)
Q Consensus 6 ~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~ 84 (485)
++|++ +|.++.+|+.+.|..+ ++.....+|. ++++|+.+++..+ ++.+.. ..|..+..|+.+.+..+ +....
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~--~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFE--NCSKLEIINIPDS-VKMIGR--CTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTT--TCTTCCEECCCTT-CCEECT--TTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhh--CCCCCcEEEeCCC-ceEccc--hhhcccccchhhcccCc-eeeec
Confidence 34544 7899999999999754 6645556787 8999999999865 555443 35555555577666544 22222
Q ss_pred CCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564 85 PAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK 162 (485)
Q Consensus 85 ~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~ 162 (485)
... -..+....... .+......+|.++++|+.+.+..+. . .++. .+|.++.+|+.+.+..+ ++.....
T Consensus 133 ~~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~------~~F~~c~~L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHN------GLFSGCGKLKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp TTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECT------TTTTTCTTCCBCCCCTT-CCEECTT
T ss_pred ceeeecccccccccCc-cccccchhhhcccCCCcEEecCCcc-c-eecc------ccccCCCCceEEEcCCC-ceEeCch
Confidence 222 11222222222 2222345678899999999987653 3 3333 56777889999999876 5546667
Q ss_pred cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccC-CccccCCCCCccEEEccCccCCccCChhhhcc
Q 039564 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIK-EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241 (485)
Q Consensus 163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 241 (485)
.|.++..|+.+.+..+... ....+....+|+.+.+.... . .+. ..+ ..+..++.+.+..+.. .+....|..
T Consensus 203 ~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f--~~~~~l~~~~~~~~~~--~i~~~~F~~ 274 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVF--YGCTDLESISIQNNKL--RIGGSLFYN 274 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTT--TTCSSCCEEEECCTTC--EECSCTTTT
T ss_pred hhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccc--cccccceeEEcCCCcc--eeecccccc
Confidence 8888999998888776432 22334455788888876543 2 222 223 5677888888876643 344445555
Q ss_pred cccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCC
Q 039564 242 WNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGL 321 (485)
Q Consensus 242 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 321 (485)
+..++......... ..........|+.+.+..+ +.......|.++.+|
T Consensus 275 ~~~l~~~~~~~~~i-------------------------------~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 275 CSGLKKVIYGSVIV-------------------------------PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp CTTCCEEEECSSEE-------------------------------CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccceeccCceee-------------------------------ccccccccccccccccccc-cceechhhhcCCCCC
Confidence 55555433221100 0000112445777777654 554556678889999
Q ss_pred CEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 322 QVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 322 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
+.++|..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 99999765 66566778999999999999877 76666788999999999998754
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2.5e-12 Score=123.39 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=59.6
Q ss_pred EEcCCC-cCcccCchhhccCCCCCEEeCcC-ceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 300 VILSSN-GFHGEIPTSIANLKGLQVLSLAN-NNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 300 L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
++.+++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3555 55566666666664 6666555555666666666666666666555555666666666666666
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564 378 NLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407 (485)
Q Consensus 378 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 407 (485)
+|++..+.......+..+.+.+|++.|+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 665443333222225555566666666554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.9e-14 Score=138.91 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCCcEEEccCCcccccCChhh-----cCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc----
Q 039564 89 TKTRHYLVSKNNLTGEIPSWI-----CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR---- 159 (485)
Q Consensus 89 ~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~---- 159 (485)
.+|++|++++|.++......+ ...++|++|+|++|.++......+ ...+..+++|++|+|++|.+++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL---MEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH---HHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH---HHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 445555555555543322222 234667777777776653211111 12233456677777777776642
Q ss_pred CCccccCCCCCcEEEccCCcccCC----cChhhhCCCCCCEEEeeccccccc
Q 039564 160 IPKSLANCAVLEIIDLGNNQIIDT----FPAWLGTLSELDILVLQSNNFHGE 207 (485)
Q Consensus 160 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 207 (485)
++..+...++|++|+|++|.+++. ++.++...++|++|+|++|.+...
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 244555666777777777777543 223344567777777777776543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=2.5e-13 Score=130.96 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=54.0
Q ss_pred ccEEEcCCCcCccc----CchhhccCCCCCEEeCcCceeccc----CCccccCCCCCCEEECCCCcCccc----Cccccc
Q 039564 297 LTAVILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGH----IPSCFGDLTKLESLDLSNNWFSGQ----IPQQLT 364 (485)
Q Consensus 297 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~ 364 (485)
|+.|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|+.|+|++|.++.. +...+.
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence 66666666666532 333445667777777777777542 244556667777888888777643 233344
Q ss_pred CCCCCCEEeccCCcccc
Q 039564 365 GLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 365 ~l~~L~~L~l~~N~l~~ 381 (485)
..++|+.|+|++|.++.
T Consensus 237 ~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 237 EHPSLELLHLYFNELSS 253 (372)
T ss_dssp HCSSCCEEECTTSSCCH
T ss_pred hCCCCCEEeccCCCCCH
Confidence 56778888888887753
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=5.7e-11 Score=113.90 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=40.6
Q ss_pred CCccEEEccC-CcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccE
Q 039564 144 SNLGIIDMSH-NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRI 222 (485)
Q Consensus 144 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 222 (485)
++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++.+..+..+ ..++ |+.
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~-L~~ 107 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLS-LQE 107 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--CSCC-CCE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc--ccCC-ceE
Confidence 4455555543 55544444445555555555555555555444455555555555555555542222222 2222 555
Q ss_pred EEccCccCC
Q 039564 223 VDLSNNSFT 231 (485)
Q Consensus 223 L~l~~n~l~ 231 (485)
|++.+|.+.
T Consensus 108 l~l~~N~~~ 116 (347)
T 2ifg_A 108 LVLSGNPLH 116 (347)
T ss_dssp EECCSSCCC
T ss_pred EEeeCCCcc
Confidence 555555554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.16 E-value=1.7e-09 Score=105.36 Aligned_cols=292 Identities=12% Similarity=0.039 Sum_probs=191.0
Q ss_pred CCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC---CCCCCCcEEEccCCccccc
Q 039564 28 LHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGE 104 (485)
Q Consensus 28 ~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~ 104 (485)
++.....+|. ++.+|+.+.+..+ ++.+... .|..+..|+.+++.++ ++.+.. ..+..|+.+.+..+ +...
T Consensus 59 VtsIg~~AF~--~c~~L~~i~lp~~-i~~I~~~--aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 59 VVSIGYAAFQ--GCRKVTEIKIPST-VREIGEF--AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp EEEECTTTTT--TCTTEEEEECCTT-CCEECTT--TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred EeEhHHHHhh--CCCCceEEEeCCC-ccCcchh--HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee
Confidence 4434456777 8999999999754 7765543 5666555599999765 443322 22777887777655 4435
Q ss_pred CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCc
Q 039564 105 IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF 184 (485)
Q Consensus 105 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 184 (485)
...+|.++..++....... . .+.. .+|..+.+|+.+.+.++..+ .....|.++.+|+.+++..+ +..+.
T Consensus 132 ~~~aF~~~~~~~~~~~~~~--~-~i~~------~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~ 200 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV--T-VIGD------EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIR 200 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC--C-EECT------TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEEC
T ss_pred cceeeecccccccccCccc--c-ccch------hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeC
Confidence 5667777654443332222 1 1221 56888899999999876543 66678999999999999876 55566
Q ss_pred ChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccc
Q 039564 185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYF 264 (485)
Q Consensus 185 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 264 (485)
..+|..+..|+.+.+..+... +.... ....+|+.+.+... +. .+....|..+..++.+.+...... +
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~--i~~~~--~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~--i----- 267 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYY--LGDFA--LSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR--I----- 267 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCE--ECTTT--TTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE--E-----
T ss_pred chhhccccccceeecCCCceE--eehhh--cccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce--e-----
Confidence 678999999999888766532 22222 34467888888643 23 455555666666666544321100 0
Q ss_pred ccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCC
Q 039564 265 SFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344 (485)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 344 (485)
..........++.+....+. .....+..+.+|+.+.+..+ +..+...+|.++.+
T Consensus 268 ----------------------~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 268 ----------------------GGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp ----------------------CSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ----------------------eccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCC
Confidence 00000113345555555432 22345778899999999776 66566778999999
Q ss_pred CCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 999999755 76666788999999999998765
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=8.4e-09 Score=100.50 Aligned_cols=292 Identities=10% Similarity=0.112 Sum_probs=160.8
Q ss_pred hhhCCC-CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCc---CcCcCCCCCCCCCCCCccEEEcCCCccccc---
Q 039564 11 FLKQQK-HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS---LTGFDQHPSVFPWSSGEFTLDLSSNFLQGP--- 83 (485)
Q Consensus 11 ~~~~l~-~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~--- 83 (485)
+|.+++ .|+.+.+..+ ++.....+|. ++.+|+.+.+..|. ++.+... .|..+..|+.+.+..+ ++.+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~--~C~~L~~i~~~~n~p~~l~~Ig~~--aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFY--NCTSLKRVTIQDNKPSCVKKIGRQ--AFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTT--TCTTCCEEEEGGGCCCCCCEECTT--TTTTCTTCCBCGGGTT-CSEECTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhh--CCccCceEeecCCCCCeeeEechh--hchhcccceeeccCCc-cceehhh
Confidence 677774 5899999754 5545566787 88999999998764 5544333 4555544476666544 2222
Q ss_pred CCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc
Q 039564 84 IPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163 (485)
Q Consensus 84 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 163 (485)
....+.+|+.+.+..+. ......+|..+..|+.+.+..+ ++ .+.. .+|.. ..|+.+.+..+-.. .....
T Consensus 132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~------~aF~~-~~l~~i~ip~~~~~-i~~~a 200 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT-AIEE------RAFTG-TALTQIHIPAKVTR-IGTNA 200 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECT------TTTTT-CCCSEEEECTTCCE-ECTTT
T ss_pred hhhhhccccccccccee-eeecccceecccccccccccce-ee-Eecc------ccccc-cceeEEEECCcccc-cccch
Confidence 22237778888886543 3355567778888888887655 33 2222 23332 56777777655433 45566
Q ss_pred ccCCCCCcEEEccCCcccCCcChhhh-------------CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564 164 LANCAVLEIIDLGNNQIIDTFPAWLG-------------TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230 (485)
Q Consensus 164 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 230 (485)
|..+.+++......+.........+. ....+..+.+... +...-...| ..+..|+.+.+.++-.
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF--~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAF--DSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTT--TTCSSCCEEECCTTCC
T ss_pred hhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEccccee--eecccccEEecccccc
Confidence 77777777776655433211111111 1122222222211 110111122 5667788887765432
Q ss_pred CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310 (485)
Q Consensus 231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 310 (485)
.+....|..+..|+. +.+. +.+...
T Consensus 278 --~I~~~aF~~c~~L~~----------------------------------------------------i~l~-~~i~~I 302 (394)
T 4gt6_A 278 --SIGTGAFMNCPALQD----------------------------------------------------IEFS-SRITEL 302 (394)
T ss_dssp --EECTTTTTTCTTCCE----------------------------------------------------EECC-TTCCEE
T ss_pred --eecCccccccccccc----------------------------------------------------ccCC-Cccccc
Confidence 344444555444433 3332 222223
Q ss_pred CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379 (485)
Q Consensus 311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 379 (485)
....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++..
T Consensus 303 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 303 PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 3345666666777776654 44344556666777777776543 4444455667777777777666543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=8.5e-10 Score=105.40 Aligned_cols=89 Identities=15% Similarity=0.040 Sum_probs=45.3
Q ss_pred hcCCCCCCEEEcccCcccccCCCc--cccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh
Q 039564 109 ICNLSSLYILDLSDNNLSGELPRC--LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186 (485)
Q Consensus 109 ~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 186 (485)
...+++|+.|.+........--.. .+.+...+..+++|+.|++++|.-. .++. +. +++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445678888877654321000000 0112123344577777777766311 1222 32 66777777776665443333
Q ss_pred hhh--CCCCCCEEEee
Q 039564 187 WLG--TLSELDILVLQ 200 (485)
Q Consensus 187 ~~~--~l~~L~~L~L~ 200 (485)
.+. .+++|+.|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 333 56777777664
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=1.6e-07 Score=90.89 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=165.5
Q ss_pred hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC--C
Q 039564 11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP--P 88 (485)
Q Consensus 11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~--~ 88 (485)
|+....+|+.+.+... ++.....+|. ++.+|+.+++..+ ++.+.. ..|..+.+ +.+.+..+ ++.+.... .
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~--~C~~L~~I~lp~~-v~~Ig~--~aF~~c~l-~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFN--SCYNMTKVTVAST-VTSIGD--GAFADTKL-QSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTT--TCTTCCEEEECTT-CCEECT--TTTTTCCC-CEEEECTT-CCEECTTTTTT
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhh--CCCCCCEEEeCCc-ceEech--hhhcCCCC-ceEECCce-eeEeccceecc
Confidence 5666778888888643 4434455677 7888888888654 665443 35555555 66666543 32222221 3
Q ss_pred CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc----------
Q 039564 89 TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG---------- 158 (485)
Q Consensus 89 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~---------- 158 (485)
.+|+.+.+.++... ....+|.+. +|+.+.+..+ ++ .+.. ..|..+..++.+.+..+....
T Consensus 113 ~~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~-~i~~------~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T 4h09_A 113 TDLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VT-TIKD------GIGYKAENLEKIEVSSNNKNYVAENYVLYNK 182 (379)
T ss_dssp CCCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CC-EECS------CTTTTCTTCCEEEECTTCSSEEEETTEEEET
T ss_pred CCcccccCCCcccc-ccccccccc-eeeeeeccce-ee-cccc------chhcccccccccccccccceeecccceeccc
Confidence 47888888765332 334455443 5665554433 22 1211 345556777777665543221
Q ss_pred --cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCCh
Q 039564 159 --RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS 236 (485)
Q Consensus 159 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 236 (485)
.....+.....+..+.+.... ......++....+|+.+.+..+- ...-...+ ..+..|+.+.+..+ ++ .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f--~~~~~L~~i~lp~~-v~-~I~~ 256 (379)
T 4h09_A 183 NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-TTLGDGAF--YGMKALDEIAIPKN-VT-SIGS 256 (379)
T ss_dssp TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-CEECTTTT--TTCSSCCEEEECTT-CC-EECT
T ss_pred ccceeccccccccccccccccce-eEEeecccccccccceeeeccce-eEEccccc--cCCccceEEEcCCC-cc-EeCc
Confidence 112234455566666555432 23344566677788888776542 21222223 56678888887654 33 4554
Q ss_pred hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhc
Q 039564 237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIA 316 (485)
Q Consensus 237 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 316 (485)
..|..+..++ .+.+..+ +.......|.
T Consensus 257 ~aF~~~~~l~----------------------------------------------------~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 257 FLLQNCTALK----------------------------------------------------TLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp TTTTTCTTCC----------------------------------------------------EEEECCC-CSEECTTTTT
T ss_pred cccceeehhc----------------------------------------------------ccccccc-ceeccccccc
Confidence 5455444433 3333222 2223344567
Q ss_pred cCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 317 NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 317 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
++++|+.+++.++.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+.+.+..+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 7788888888777776566677888888888888654 55455667888888887776543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.87 E-value=1.8e-07 Score=91.03 Aligned_cols=290 Identities=11% Similarity=0.101 Sum_probs=177.2
Q ss_pred hhhCCCCCCEEECCCCc---CCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc--cccCC
Q 039564 11 FLKQQKHLKALDLSSNK---LHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL--QGPIP 85 (485)
Q Consensus 11 ~~~~l~~L~~L~Ls~n~---~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l--~~~~~ 85 (485)
+|.++.+|+.+.++.|. ++.....+|. .+.+|+.+.+..+ ++.+.. ..|..+..|+.+.+..+-. .....
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~--~c~~L~~i~~~~~-~~~I~~--~aF~~c~~L~~i~lp~~~~~I~~~~F 156 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFM--FCSELTDIPILDS-VTEIDS--EAFHHCEELDTVTIPEGVTSVADGMF 156 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTT--TCTTCCBCGGGTT-CSEECT--TTTTTCTTCCEEECCTTCCEECTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhch--hcccceeeccCCc-cceehh--hhhhhhcccccccccceeeeecccce
Confidence 78899999999998764 5534456677 7899998888765 454433 3555555559999975422 22222
Q ss_pred CCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc--
Q 039564 86 APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS-- 163 (485)
Q Consensus 86 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~-- 163 (485)
..+..|+.+.+.++ +...-..+|.. ..|+.+.+..+-.. ... .+|..+.+++......+.... ....
T Consensus 157 ~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~-------~af~~c~~l~~~~~~~~~~~~-~~~~~~ 225 (394)
T 4gt6_A 157 SYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGT-------NAFSECFALSTITSDSESYPA-IDNVLY 225 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECT-------TTTTTCTTCCEEEECCSSSCB-SSSCEE
T ss_pred ecccccccccccce-eeEeccccccc-cceeEEEECCcccc-ccc-------chhhhccccceeccccccccc-ccceee
Confidence 33788999988765 44344556654 67888887655322 111 446666777777665544331 1111
Q ss_pred ------------ccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564 164 ------------LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 164 ------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
+.....+..+.+.. .+......+|..+.+|+.+.+..+... .-...+ ..+++|+.+.+. +.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF--~~c~~L~~i~l~-~~i~ 300 (394)
T 4gt6_A 226 EKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAF--MNCPALQDIEFS-SRIT 300 (394)
T ss_dssp EECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTT--TTCTTCCEEECC-TTCC
T ss_pred cccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccc--ccccccccccCC-Cccc
Confidence 11223444555443 233445567888899999988765432 222233 677889999886 3444
Q ss_pred ccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccC
Q 039564 232 GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEI 311 (485)
Q Consensus 232 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 311 (485)
.++...|..+.+|+. +++..+ ++..-
T Consensus 301 -~I~~~aF~~c~~L~~----------------------------------------------------i~lp~~-v~~I~ 326 (394)
T 4gt6_A 301 -ELPESVFAGCISLKS----------------------------------------------------IDIPEG-ITQIL 326 (394)
T ss_dssp -EECTTTTTTCTTCCE----------------------------------------------------EECCTT-CCEEC
T ss_pred -ccCceeecCCCCcCE----------------------------------------------------EEeCCc-ccEeh
Confidence 666666766665444 444322 33344
Q ss_pred chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564 312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379 (485)
Q Consensus 312 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 379 (485)
..+|.++.+|+.+.|..+ ++.+-..+|.++++|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 557888899999999765 665566789999999999998876442 4567778888888876654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=3.2e-09 Score=101.38 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=48.8
Q ss_pred CCCCEEECCCCcCCC-CC-------CcccccCCCCCCcEEEccCCcCcC-----cCC--CCCCCCCCCCccEEEcCCCcc
Q 039564 16 KHLKALDLSSNKLHG-NI-------PKWLLNPSMQNFSYLNLSKNSLTG-----FDQ--HPSVFPWSSGEFTLDLSSNFL 80 (485)
Q Consensus 16 ~~L~~L~Ls~n~~~~-~~-------p~~~~~~~l~~L~~L~Ls~n~l~~-----~~~--~~~~~~~~~lL~~L~l~~n~l 80 (485)
..++.|.+......+ .. ..+.. .+++|+.|.+....... ... ...+....+.|+.|++++|.-
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~--~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKE--KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHH--HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhh--hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 456777777655432 11 22233 46788888886643211 100 001122233446666665521
Q ss_pred cccCCCCCCCCcEEEccCCcccccCChhhc--CCCCCCEEEcc
Q 039564 81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWIC--NLSSLYILDLS 121 (485)
Q Consensus 81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~L~ 121 (485)
....+...++|++|++..+.+.......++ .+++|+.|+|+
T Consensus 185 l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 185 LSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred ceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 111111245666666665555433223333 45666666654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=1.5e-06 Score=83.92 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=38.6
Q ss_pred chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564 312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377 (485)
Q Consensus 312 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 377 (485)
...|.++.+|+.+.+..+ +......+|.++.+|+.+++.++.++.+...+|.++.+|+.+.+..+
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 344556666666666543 33344455666666666666666666555566666666666666543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=2.3e-08 Score=86.15 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=61.4
Q ss_pred hhhcCCCCCCEEEcccC-cccccCCCccccCcccccCCCCccEEEccCCccccc----CCccccCCCCCcEEEccCCccc
Q 039564 107 SWICNLSSLYILDLSDN-NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQII 181 (485)
Q Consensus 107 ~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~ 181 (485)
..+...+.|++|+|++| .+....- ..+...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~---~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTL---KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHH---HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHH---HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34445566666666665 5542211 11112333445666666666665532 2233344456666666666664
Q ss_pred CC----cChhhhCCCCCCEEEe--ecccccccc----CCccccCCCCCccEEEccCccCC
Q 039564 182 DT----FPAWLGTLSELDILVL--QSNNFHGEI----KEHKMECGFPKLRIVDLSNNSFT 231 (485)
Q Consensus 182 ~~----~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~~~l~~L~~L~l~~n~l~ 231 (485)
+. +..++...++|++|++ ++|.+...- ...+ ...++|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L--~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML--EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH--HHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH--HhCCCcCEEeccCCCCC
Confidence 32 2334445566666666 566665321 1112 23456777777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=2.9e-08 Score=85.50 Aligned_cols=115 Identities=8% Similarity=0.081 Sum_probs=87.4
Q ss_pred CCCCcEEEccCC-ccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc---
Q 039564 88 PTKTRHYLVSKN-NLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR--- 159 (485)
Q Consensus 88 ~~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~--- 159 (485)
.+.|++|++++| .+... +...+...++|++|+|++|.+.......++ ..+...++|++|+|++|.|.+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---EMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---HHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---HHHHhCCCcCEEECcCCcCCHHHHH
Confidence 678999999999 88743 345566788999999999998743222222 3345568899999999999854
Q ss_pred -CCccccCCCCCcEEEc--cCCcccCC----cChhhhCCCCCCEEEeeccccc
Q 039564 160 -IPKSLANCAVLEIIDL--GNNQIIDT----FPAWLGTLSELDILVLQSNNFH 205 (485)
Q Consensus 160 -~~~~~~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 205 (485)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566778889999999 88988654 3345556789999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=6.6e-07 Score=81.01 Aligned_cols=67 Identities=27% Similarity=0.328 Sum_probs=38.5
Q ss_pred ccCCCCCEEeCcCceecc--cCCccccCCCCCCEEECCCCcCcccCcccccCCC--CCCEEeccCCcccccCC
Q 039564 316 ANLKGLQVLSLANNNLEG--HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT--FLEFFNVSHNNLTGPIP 384 (485)
Q Consensus 316 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p 384 (485)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. .|+.|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666664 3344555666666666666666643 1222222 66666666666665444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=3.9e-07 Score=82.50 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=63.0
Q ss_pred ccccccEEEcCCCcCcc--cCchhhccCCCCCEEeCcCceecccCCccccCCC--CCCEEECCCCcCcccCcc-------
Q 039564 293 IPYILTAVILSSNGFHG--EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT--KLESLDLSNNWFSGQIPQ------- 361 (485)
Q Consensus 293 ~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------- 361 (485)
.++.|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 36789999999999987 4557778899999999999999864 3344444 899999999999876652
Q ss_pred cccCCCCCCEEe
Q 039564 362 QLTGLTFLEFFN 373 (485)
Q Consensus 362 ~~~~l~~L~~L~ 373 (485)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467788888776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2e-06 Score=72.16 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=68.1
Q ss_pred ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCce-ecccCCccccCC----CCCCEEECCCC-cCcccCcccccCCCC
Q 039564 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDL----TKLESLDLSNN-WFSGQIPQQLTGLTF 368 (485)
Q Consensus 295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N-~l~~~~p~~~~~l~~ 368 (485)
..|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++| +++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999887766778899999999999995 665444445554 47999999999 488655566788999
Q ss_pred CCEEeccCCc
Q 039564 369 LEFFNVSHNN 378 (485)
Q Consensus 369 L~~L~l~~N~ 378 (485)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=8e-06 Score=68.50 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=50.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCcEEEccCCc-ccCCcChhhhCC----CCCCEEEeeccc-cccccCCccccCCC
Q 039564 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ-IIDTFPAWLGTL----SELDILVLQSNN-FHGEIKEHKMECGF 217 (485)
Q Consensus 144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~l 217 (485)
..|+.||++++.+++.--..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|. ++..--..+ ..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcC
Confidence 357777777777665555556677777777777774 544333444443 357777777764 443222223 346
Q ss_pred CCccEEEccCcc
Q 039564 218 PKLRIVDLSNNS 229 (485)
Q Consensus 218 ~~L~~L~l~~n~ 229 (485)
++|+.|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 777777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=5.1e-05 Score=64.85 Aligned_cols=63 Identities=5% Similarity=0.068 Sum_probs=30.2
Q ss_pred ccCCCCccEEEccCCcccccC----CccccCCCCCcEEEccCCcccCCc----ChhhhCCCCCCEEEeecc
Q 039564 140 FMNGSNLGIIDMSHNLLQGRI----PKSLANCAVLEIIDLGNNQIIDTF----PAWLGTLSELDILVLQSN 202 (485)
Q Consensus 140 ~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n 202 (485)
+.....|+.|+|++|.|.+.- .+.+..-+.|++|+|++|.|.+.- ..++..-+.|++|+|++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334455555555555555322 222334455666666666554321 122333445666666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00058 Score=54.40 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=36.9
Q ss_pred EEeCcCceec-ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564 323 VLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381 (485)
Q Consensus 323 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 381 (485)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 24444332 357777777777776555667777777777777666653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00079 Score=53.64 Aligned_cols=56 Identities=25% Similarity=0.228 Sum_probs=41.1
Q ss_pred cEEEcCCCccc--ccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc
Q 039564 71 FTLDLSSNFLQ--GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126 (485)
Q Consensus 71 ~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 126 (485)
.+++.+++.++ ......+.+|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777776 333344667888888888888666667888888888888888765
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00012 Score=62.60 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=66.7
Q ss_pred CCCCcEEEccCC-ccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc---
Q 039564 88 PTKTRHYLVSKN-NLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR--- 159 (485)
Q Consensus 88 ~~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~--- 159 (485)
-+.|++|+|++| .+... +...+..-+.|+.|+|++|++....-..++ .++...+.|++|+|+.|.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA---~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI---ELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH---HHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH---HHHhcCCccCeEecCCCcCCHHHHH
Confidence 345666666654 55421 334455667777777777777644333332 3344557777778877777643
Q ss_pred -CCccccCCCCCcEEEccCC---cccC----CcChhhhCCCCCCEEEeecccc
Q 039564 160 -IPKSLANCAVLEIIDLGNN---QIID----TFPAWLGTLSELDILVLQSNNF 204 (485)
Q Consensus 160 -~~~~~~~l~~L~~L~Ls~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l 204 (485)
+-+.+..-+.|++|+|++| .+.. .+..++..-+.|+.|+++.|..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2344555666888888754 2322 1233455567788888776654
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=82.57 E-value=0.098 Score=31.94 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=2.7
Q ss_pred eeeehhh
Q 039564 446 GGVVAGL 452 (485)
Q Consensus 446 ~~~~~~~ 452 (485)
+++++++
T Consensus 15 ~gVVgGv 21 (44)
T 2ks1_B 15 TGMVGAL 21 (44)
T ss_dssp HHHHHHH
T ss_pred eehhHHH
Confidence 3333333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.86 E-value=0.11 Score=31.66 Aligned_cols=6 Identities=67% Similarity=1.342 Sum_probs=2.2
Q ss_pred eeehhh
Q 039564 447 GVVAGL 452 (485)
Q Consensus 447 ~~~~~~ 452 (485)
++++++
T Consensus 15 gVVgGv 20 (44)
T 2l2t_A 15 GVIGGL 20 (44)
T ss_dssp HHHHHH
T ss_pred eehHHH
Confidence 333333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.04 E-value=16 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=26.1
Q ss_pred ccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564 156 LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS 201 (485)
Q Consensus 156 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 201 (485)
++.+-...|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334455666666666666554 3344455666666666666654
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.18 E-value=1.6 Score=25.68 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=4.5
Q ss_pred eeeehhhHHHH
Q 039564 446 GGVVAGLVLGF 456 (485)
Q Consensus 446 ~~~~~~~~~~~ 456 (485)
+|+|++.++++
T Consensus 14 AGiVvG~v~gv 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeehHHHHHH
Confidence 34444444333
No 169
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=45.54 E-value=1.3 Score=29.15 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=5.6
Q ss_pred eeeehhhHHHHHHh
Q 039564 446 GGVVAGLVLGFNFS 459 (485)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (485)
+++.+.+.++++++
T Consensus 16 g~~~lll~~glcI~ 29 (70)
T 2klu_A 16 GVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.78 E-value=37 Score=24.77 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=20.7
Q ss_pred ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccC
Q 039564 138 DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177 (485)
Q Consensus 138 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 177 (485)
.+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34455555555555443 2224445566666666666654
No 171
>3iz5_q 60S ribosomal protein L41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_q
Probab=39.52 E-value=14 Score=18.80 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=7.0
Q ss_pred eeehhhhhhHHHhhhh
Q 039564 464 GWFLEKLGMQQKKRRK 479 (485)
Q Consensus 464 ~~~~~~~~~~~~~~~~ 479 (485)
.|.-.+.++...+||+
T Consensus 4 KW~KKR~rRlkrkRrk 19 (25)
T 3iz5_q 4 KWKKKRMRRLKRKRRK 19 (26)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4554444444443333
No 172
>3izc_q 60S ribosomal protein RPL41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_q 3u5e_n 3u5i_n 4b6a_n
Probab=37.80 E-value=16 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=6.5
Q ss_pred eeehhhhhhHHHhhh
Q 039564 464 GWFLEKLGMQQKKRR 478 (485)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (485)
.|.-.+.++...+||
T Consensus 4 KWrKKR~rRlkrkRr 18 (25)
T 3izc_q 4 KWRKKRTRRLKRKRR 18 (26)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 454444444433333
No 173
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.30 E-value=6.8 Score=27.37 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.2
Q ss_pred eeeeeeeeeehhh
Q 039564 440 VLIGYAGGVVAGL 452 (485)
Q Consensus 440 ~~~~~~~~~~~~~ 452 (485)
++.|+++|+++..
T Consensus 13 Iv~gvi~gilliG 25 (79)
T 2knc_B 13 VLLSVMGAILLIG 25 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3445555554333
Done!