BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039568
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUV3|IRX7_ARATH Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis
thaliana GN=IRX7 PE=2 SV=1
Length = 448
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/69 (72%), Positives = 58/69 (84%)
Query: 1 LTVAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQ 60
LTVAE+DV LG IL+HVAATNLS+IQ+NL DP VRRAL+FN EGDATWQV+ ALS+
Sbjct: 376 LTVAERDVGKLGDILEHVAATNLSVIQRNLEDPSVRRALMFNVPSREGDATWQVLEALSK 435
Query: 61 KLDRSYRRS 69
KL+RS RRS
Sbjct: 436 KLNRSVRRS 444
>sp|Q10SX7|GT31_ORYSJ Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa
subsp. japonica GN=Os03g0107900 PE=2 SV=1
Length = 427
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 1 LTVAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQ 60
L VAEKDVA+L +LDHV ATNL++IQKNLWDP R+AL+FN +EEGDATWQV+R L
Sbjct: 353 LQVAEKDVASLEMVLDHVVATNLTVIQKNLWDPVKRKALVFNRPMEEGDATWQVLRELEI 412
Query: 61 KLDRSYRR 68
LDRS RR
Sbjct: 413 LLDRSQRR 420
>sp|Q6NMM8|F8H_ARATH Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis
thaliana GN=F8H PE=2 SV=1
Length = 469
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 1 LTVAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQ 60
LTVAEKDV L +L+HVAATNLS IQ+NL +P +RALL+N ++EGDATW ++ +L +
Sbjct: 390 LTVAEKDVRNLRKVLEHVAATNLSAIQRNLHEPVFKRALLYNVPMKEGDATWHILESLWR 449
Query: 61 KL-DRSYRRSEVSGQ 74
KL DRSYRRS V Q
Sbjct: 450 KLDDRSYRRSRVLSQ 464
>sp|Q9FZJ1|IRX10_ARATH Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana
GN=IRX10 PE=2 SV=1
Length = 412
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
VAEKDV L IL + + Q+ L +P ++RA+LF + GDA Q++ L++KL
Sbjct: 325 VAEKDVPELDTILTSIPTEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKL 384
>sp|Q8S1X7|GT15_ORYSJ Probable glucuronosyltransferase Os01g0926700 OS=Oryza sativa
subsp. japonica GN=Os01g0926700 PE=2 SV=1
Length = 417
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
VAE+DV L IL + + Q+ L +P +++A+LF + GDA Q++ L++KL
Sbjct: 330 VAEEDVPKLDSILTSIPTDVILRKQRLLANPSMKQAMLFPQPAQAGDAFHQILNGLARKL 389
>sp|Q940Q8|IX10L_ARATH Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana
GN=IRX10L PE=2 SV=1
Length = 415
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
V EKDV L IL + + Q+ L +P +++A+LF + GDA QV+ L++KL
Sbjct: 328 VDEKDVPYLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKL 387
>sp|Q33AH8|GT101_ORYSJ Probable glucuronosyltransferase GUT1 OS=Oryza sativa subsp.
japonica GN=GUT1 PE=2 SV=2
Length = 417
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
VAE DV L IL + + Q L +P +++ +LF E GD QV+ AL++KL
Sbjct: 330 VAEDDVPQLDTILTSIPTEVILRKQAMLAEPSMKQTMLFPQPAEPGDGFHQVMNALARKL 389
>sp|Q8S1X9|GT13_ORYSJ Probable glucuronosyltransferase Os01g0926400 OS=Oryza sativa
subsp. japonica GN=Os01g0926400 PE=2 SV=1
Length = 422
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
VAE+DV L IL V + Q+ L P +++A+LF+ GDA Q++ L++KL
Sbjct: 335 VAEEDVPRLDTILASVPLDEVIRKQRLLASPAMKQAVLFHQPARPGDAFHQILNGLARKL 394
>sp|Q8S1X8|GT14_ORYSJ Probable glucuronosyltransferase Os01g0926600 OS=Oryza sativa
subsp. japonica GN=Os01g0926600 PE=2 SV=1
Length = 415
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
VAE DV L IL + + Q+ L +P +++A+LF + GDA Q++ L +KL
Sbjct: 328 VAEDDVPKLDTILTSIPMDVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQILNGLGRKL 387
>sp|Q7XLG3|GT42_ORYSJ Probable glucuronosyltransferase Os04g0398600 OS=Oryza sativa
subsp. japonica GN=Os04g0398600 PE=2 SV=2
Length = 420
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
V EKDV L IL + ++ Q+ L +P +++A+LF + DA Q++ L++KL
Sbjct: 333 VEEKDVPKLDTILTSMPIDDILRKQRLLANPSMKQAMLFPQPAQPRDAFHQILNGLARKL 392
>sp|Q6H4N0|GT21_ORYSJ Probable glucuronosyltransferase Os02g0520750 OS=Oryza sativa
subsp. japonica GN=Os02g0520750 PE=2 SV=1
Length = 434
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 3 VAEKDVATLGPILDHVAATNLSIIQKNLWDPDVRRALLFNDRVEEGDATWQVIRALSQKL 62
V E+DV L IL + ++ Q+ L +P +++A+LF + DA Q++ L++KL
Sbjct: 346 VDEEDVPRLDSILTSIPIDDILRKQRLLANPSMKQAMLFPQPAQPRDAFHQILNGLARKL 405
>sp|B8FCZ0|PNP_DESAA Polyribonucleotide nucleotidyltransferase OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=pnp PE=3 SV=1
Length = 712
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 30 LWDPDVRRALLFNDRVEEGDATWQVIRALSQKLDRSY--RRSEVS 72
L DP++++AL ND++E DA V + + + L Y R EVS
Sbjct: 248 LADPEIKKALEINDKLERQDAIRDVKKTVMEGLGEEYEDRGKEVS 292
>sp|Q9Y5B6|GCFC1_HUMAN GC-rich sequence DNA-binding factor 1 OS=Homo sapiens GN=GCFC1 PE=1
SV=2
Length = 917
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 7 DVATLGPILDHVAATNLSIIQKNLWDP 33
DVA L I++ V L++I +N+WDP
Sbjct: 672 DVALLPTIVEKVILPKLTVIAENMWDP 698
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,492,759
Number of Sequences: 539616
Number of extensions: 737876
Number of successful extensions: 1562
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 15
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)