Query 039568
Match_columns 74
No_of_seqs 91 out of 93
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kw3_C Regulatory factor X-ass 55.9 7.3 0.00025 23.3 2.1 22 43-65 10-31 (62)
2 3ph0_A ASCE; type III secretio 42.9 13 0.00045 22.4 1.9 40 10-49 4-45 (67)
3 2uwj_E Type III export protein 33.2 12 0.0004 22.8 0.5 42 8-49 5-48 (70)
4 1vpt_A VP39; RNA CAP, poly(A) 28.0 22 0.00074 27.3 1.3 17 38-54 263-279 (348)
5 1nrp_R Receptor based peptide 23.5 19 0.00063 18.0 0.2 16 37-52 4-19 (26)
6 1ik9_C DNA ligase IV; DNA END 21.8 28 0.00096 18.2 0.7 13 7-19 23-35 (37)
7 1vdy_A Hypothetical protein (R 21.0 1.4E+02 0.0047 19.5 4.1 44 17-62 79-124 (140)
8 3mag_A VP39; methylated adenin 17.3 48 0.0017 24.9 1.3 21 34-54 242-264 (307)
9 2dn5_A General transcription f 16.9 38 0.0013 21.2 0.6 12 6-17 61-72 (89)
10 1nro_R Receptor based peptide 16.2 31 0.0011 17.2 0.0 16 37-52 4-19 (27)
No 1
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=55.92 E-value=7.3 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.065 Sum_probs=16.5
Q ss_pred CCCCCchHHHHHHHHHHhhcccc
Q 039568 43 DRVEEGDATWQVIRALSQKLDRS 65 (74)
Q Consensus 43 ~p~~~yDafHmVL~sLw~kl~~~ 65 (74)
+|++| |.|+|||++==.-|=||
T Consensus 10 ~~~rp-~l~eqVLNqKk~SLLRs 31 (62)
T 2kw3_C 10 RPARP-TLLEQVLNQKRLSLLRS 31 (62)
T ss_dssp CSCCC-CHHHHHHHHHHHHTTCC
T ss_pred CCCCc-cHHHHHHHHHHHHHhcC
Confidence 46666 99999999865555555
No 2
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=42.91 E-value=13 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=28.0
Q ss_pred cHHHHhhhhchhHHHHHHHhcCch--hhhhhhcccCCCCCch
Q 039568 10 TLGPILDHVAATNLSIIQKNLWDP--DVRRALLFNDRVEEGD 49 (74)
Q Consensus 10 ~Lk~IL~~i~~~~y~~~Qr~l~~~--~vrrhf~~n~p~~~yD 49 (74)
+|.+||.+...+.+..++..|.+- .|||-+.--..|+.|-
T Consensus 4 ~LE~~L~~~~~~~~~~i~~~L~qAl~~vKr~L~~G~~pqqyQ 45 (67)
T 3ph0_A 4 NLETRLSGADPVFARELHAQLVQALGDVKRRLLRGGTQQQYQ 45 (67)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred hHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 689999999877899988877642 5888888888888764
No 3
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.20 E-value=12 Score=22.85 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=32.3
Q ss_pred cccHHHHhhhhchhHHHHHHHhcCch--hhhhhhcccCCCCCch
Q 039568 8 VATLGPILDHVAATNLSIIQKNLWDP--DVRRALLFNDRVEEGD 49 (74)
Q Consensus 8 Vp~Lk~IL~~i~~~~y~~~Qr~l~~~--~vrrhf~~n~p~~~yD 49 (74)
.-+|.++|.+...+.+..++..|.+- .|||-+.--..|+.|-
T Consensus 5 MTnLE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~G~~pqqyQ 48 (70)
T 2uwj_E 5 MTALETRLSVADGTHAAALRQRLQAALAECRRELARGACPERFQ 48 (70)
T ss_dssp SSHHHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45799999997788888888877542 5788888877777653
No 4
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=27.96 E-value=22 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=14.6
Q ss_pred hhcccCCCCCchHHHHH
Q 039568 38 ALLFNDRVEEGDATWQV 54 (74)
Q Consensus 38 hf~~n~p~~~yDafHmV 54 (74)
...|.-|-|.||-|||-
T Consensus 263 v~~fd~p~q~yd~fh~~ 279 (348)
T 1vpt_A 263 VVNFDYPNQEYDYFHMY 279 (348)
T ss_dssp ETTCCSSCCBHHHHHHH
T ss_pred EEeecCccccccHHHHH
Confidence 46778899999999994
No 5
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=23.54 E-value=19 Score=17.96 Aligned_cols=16 Identities=19% Similarity=0.586 Sum_probs=13.3
Q ss_pred hhhcccCCCCCchHHH
Q 039568 37 RALLFNDRVEEGDATW 52 (74)
Q Consensus 37 rhf~~n~p~~~yDafH 52 (74)
|.|+...|-.+|.-||
T Consensus 4 rsfllrnpndkyepfw 19 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFW 19 (26)
T ss_pred hhhhhcCCCcccCccc
Confidence 5688888888998887
No 6
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.76 E-value=28 Score=18.17 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=11.0
Q ss_pred CcccHHHHhhhhc
Q 039568 7 DVATLGPILDHVA 19 (74)
Q Consensus 7 DVp~Lk~IL~~i~ 19 (74)
++-+||.||.+|+
T Consensus 23 t~~eLk~il~~m~ 35 (37)
T 1ik9_C 23 DLNQLKEVFSGIK 35 (37)
T ss_dssp CHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHcc
Confidence 6788999999885
No 7
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.97 E-value=1.4e+02 Score=19.54 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=34.2
Q ss_pred hhchhHHHHHHHhcCchhhhhhhcccCCCC--CchHHHHHHHHHHhhc
Q 039568 17 HVAATNLSIIQKNLWDPDVRRALLFNDRVE--EGDATWQVIRALSQKL 62 (74)
Q Consensus 17 ~i~~~~y~~~Qr~l~~~~vrrhf~~n~p~~--~yDafHmVL~sLw~kl 62 (74)
.=+++-...+++|.. .+|....|+-||. .||.-.+-+..-..-|
T Consensus 79 ~Gs~~f~~~~r~~~~--~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 79 KSGSEFRREMQRNSV--AVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp TSCHHHHHHHHHTTH--HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhHH--HHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 334666778888886 6999999999988 6899998887655443
No 8
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=17.31 E-value=48 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=15.3
Q ss_pred hhhhhhc--ccCCCCCchHHHHH
Q 039568 34 DVRRALL--FNDRVEEGDATWQV 54 (74)
Q Consensus 34 ~vrrhf~--~n~p~~~yDafHmV 54 (74)
.+|...+ |.=|-|.||-|||-
T Consensus 242 ~~R~~~~~~~dy~~q~yd~f~~~ 264 (307)
T 3mag_A 242 IVRNKVVVNFDYPNQEYDYFHMY 264 (307)
T ss_dssp TGGGCEETTCCSSCCBHHHHHHH
T ss_pred heeeeEEEcccCCcchhhHHHHH
Confidence 3566644 44599999999993
No 9
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.87 E-value=38 Score=21.23 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=10.1
Q ss_pred cCcccHHHHhhh
Q 039568 6 KDVATLGPILDH 17 (74)
Q Consensus 6 ~DVp~Lk~IL~~ 17 (74)
-||++|++||++
T Consensus 61 y~I~~Le~IL~~ 72 (89)
T 2dn5_A 61 YDIHRLEKILKA 72 (89)
T ss_dssp CCHHHHHHHHTT
T ss_pred ccHHHHHHHHhh
Confidence 488999999965
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=16.17 E-value=31 Score=17.24 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=13.0
Q ss_pred hhhcccCCCCCchHHH
Q 039568 37 RALLFNDRVEEGDATW 52 (74)
Q Consensus 37 rhf~~n~p~~~yDafH 52 (74)
|-|+...|-.+|.-||
T Consensus 4 rpfllrnpndkyepfw 19 (27)
T 1nro_R 4 RPFLLRNPNDKYEPFW 19 (27)
T ss_pred ccccccCCCcccCccc
Confidence 5678888888888887
Done!