Query 039568
Match_columns 74
No_of_seqs 91 out of 93
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 18:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039568.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039568hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjj_ f.23.14.1 (J:) Subunit 34.8 13 0.00092 18.4 2.1 17 50-66 5-21 (33)
2 d1vpta_ c.66.1.25 (A:) Polymer 27.3 10 0.00073 26.8 1.2 18 38-55 248-265 (297)
3 d1h3la_ a.177.1.1 (A:) Sigma f 21.6 30 0.0022 17.8 2.2 24 42-65 29-52 (75)
4 d1q60a_ d.288.1.1 (A:) General 21.3 13 0.00094 22.3 0.7 12 6-17 61-72 (99)
5 d1aopa2 d.58.36.1 (A:346-425) 19.9 15 0.0011 20.4 0.7 16 3-18 58-73 (80)
6 d1x8da1 d.58.4.21 (A:1-104) L- 19.8 16 0.0012 21.1 0.8 19 20-39 15-33 (104)
7 d1k28a2 b.108.1.2 (A:362-584) 15.4 17 0.0012 22.6 0.2 12 39-50 13-24 (223)
8 d1xqoa_ a.96.1.6 (A:) 8-oxogua 13.9 25 0.0018 24.0 0.8 29 4-34 2-30 (253)
9 d1s5qb_ a.59.1.1 (B:) Sin3A {M 12.8 29 0.0021 19.4 0.7 24 34-59 19-42 (89)
10 d2bbya_ a.4.5.15 (A:) DNA-bind 12.6 35 0.0025 18.9 1.0 15 6-20 34-48 (69)
No 1
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.84 E-value=13 Score=18.43 Aligned_cols=17 Identities=18% Similarity=0.054 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhccccc
Q 039568 50 ATWQVIRALSQKLDRSY 66 (74)
Q Consensus 50 afHmVL~sLw~kl~~~~ 66 (74)
||.+....+|..+++++
T Consensus 5 afD~~~d~i~d~~NkGk 21 (33)
T d1ppjj_ 5 AFDQGADAIYEHINEGK 21 (33)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHhhhHHHHHHHhcccc
Confidence 79999999999998863
No 2
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
Probab=27.25 E-value=10 Score=26.76 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=15.0
Q ss_pred hhcccCCCCCchHHHHHH
Q 039568 38 ALLFNDRVEEGDATWQVI 55 (74)
Q Consensus 38 hf~~n~p~~~yDafHmVL 55 (74)
|+=|+-|.+.||-|||-+
T Consensus 248 ~~nfd~~~~~yd~~~~y~ 265 (297)
T d1vpta_ 248 VVNFDYPNQEYDYFHMYF 265 (297)
T ss_dssp ETTCCSSCCBHHHHHHHH
T ss_pred eecccCchHHHHHHHHHH
Confidence 666778999999999954
No 3
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=21.58 E-value=30 Score=17.78 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=21.0
Q ss_pred cCCCCCchHHHHHHHHHHhhcccc
Q 039568 42 NDRVEEGDATWQVIRALSQKLDRS 65 (74)
Q Consensus 42 n~p~~~yDafHmVL~sLw~kl~~~ 65 (74)
.++..-.|+.+-++-.+|+++++-
T Consensus 29 ~d~~~aeDivQd~f~~~~~~~~~~ 52 (75)
T d1h3la_ 29 RNPADAEDLVQETYAKAYASFHQF 52 (75)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhc
Confidence 567888999999999999999863
No 4
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.28 E-value=13 Score=22.31 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.3
Q ss_pred cCcccHHHHhhh
Q 039568 6 KDVATLGPILDH 17 (74)
Q Consensus 6 ~DVp~Lk~IL~~ 17 (74)
=||++|++||++
T Consensus 61 ygi~~Le~IL~~ 72 (99)
T d1q60a_ 61 FGIPRLEKILRN 72 (99)
T ss_dssp SCHHHHHHHHHT
T ss_pred cCHHHHHHHHHc
Confidence 489999999986
No 5
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=19.92 E-value=15 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.0
Q ss_pred ccccCcccHHHHhhhh
Q 039568 3 VAEKDVATLGPILDHV 18 (74)
Q Consensus 3 V~e~DVp~Lk~IL~~i 18 (74)
|+++|++.++++|+..
T Consensus 58 V~~~~~~~i~~~L~~~ 73 (80)
T d1aopa2 58 VPESEKAKIEKIAKES 73 (80)
T ss_dssp EEGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6778888888887654
No 6
>d1x8da1 d.58.4.21 (A:1-104) L-rhamnose mutarotase YiiL {Escherichia coli [TaxId: 562]}
Probab=19.77 E-value=16 Score=21.10 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=15.2
Q ss_pred hhHHHHHHHhcCchhhhhhh
Q 039568 20 ATNLSIIQKNLWDPDVRRAL 39 (74)
Q Consensus 20 ~~~y~~~Qr~l~~~~vrrhf 39 (74)
.++|.+.++++| |+|.+++
T Consensus 15 i~eY~~~H~~vW-PEv~~~l 33 (104)
T d1x8da1 15 HEEYQRRHNPIW-PELEAVL 33 (104)
T ss_dssp HHHHHHTTTTCC-HHHHHHH
T ss_pred HHHHHHHHhccC-HHHHHHH
Confidence 578999999999 6777664
No 7
>d1k28a2 b.108.1.2 (A:362-584) Tail-associated lysozyme gp5, C-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=15.42 E-value=17 Score=22.62 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=9.9
Q ss_pred hcccCCCCCchH
Q 039568 39 LLFNDRVEEGDA 50 (74)
Q Consensus 39 f~~n~p~~~yDa 50 (74)
-+|++|+-+|.|
T Consensus 13 ~~~~ep~~~y~~ 24 (223)
T d1k28a2 13 ILFKEPVSSYKG 24 (223)
T ss_dssp EEEECCCCCCCC
T ss_pred ccccCCCCCccC
Confidence 468999999876
No 8
>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=13.86 E-value=25 Score=23.98 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.0
Q ss_pred cccCcccHHHHhhhhchhHHHHHHHhcCchh
Q 039568 4 AEKDVATLGPILDHVAATNLSIIQKNLWDPD 34 (74)
Q Consensus 4 ~e~DVp~Lk~IL~~i~~~~y~~~Qr~l~~~~ 34 (74)
+|+.+-+|.+||..++.+....|..+ ||+
T Consensus 2 ~e~~i~~l~eiL~~~~ie~~~~iEe~--DpQ 30 (253)
T d1xqoa_ 2 AESQLKRVIETLRRLGIEEVLKLERR--DPQ 30 (253)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTT--SHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHh--CHH
Confidence 46678899999999988877777777 653
No 9
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.83 E-value=29 Score=19.37 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=19.1
Q ss_pred hhhhhhcccCCCCCchHHHHHHHHHH
Q 039568 34 DVRRALLFNDRVEEGDATWQVIRALS 59 (74)
Q Consensus 34 ~vrrhf~~n~p~~~yDafHmVL~sLw 59 (74)
+||.+|. ++ |..|+.|-.||+..=
T Consensus 19 kVK~~f~-d~-p~~Y~~FL~il~~f~ 42 (89)
T d1s5qb_ 19 KIKNRFQ-GQ-PDIYKAFLEILHTYQ 42 (89)
T ss_dssp HHHHHTT-TC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHc-cC-hHHHHHHHHHHHHHH
Confidence 5888886 55 579999999998753
No 10
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.56 E-value=35 Score=18.90 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.6
Q ss_pred cCcccHHHHhhhhch
Q 039568 6 KDVATLGPILDHVAA 20 (74)
Q Consensus 6 ~DVp~Lk~IL~~i~~ 20 (74)
.-+..||+||+.|+.
T Consensus 34 QP~~yLKeiL~eIa~ 48 (69)
T d2bbya_ 34 QPVVYLKEILKEIGV 48 (69)
T ss_dssp SCHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHH
Confidence 345679999999984
Done!