BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039577
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 37/261 (14%)
Query: 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGII 70
+T L L G +PP G+ S L SL + +F G LP + L +++ L+++DLS
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 71 PGSLPD------------DTSGDCI--------------MLRRLSFSFNKIRGWIPQKIG 104
G LP+ D S + L+ L N G IP +
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL-RSSIYLPNLENLFLW 163
N +ELV L+L N L +G +PS + + S ++ + L+ N L G + + +Y+ LE L L
Sbjct: 413 NCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 164 QNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQL 223
N+L G +P + N + + + LS N +G P IG L +L S+
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRL-------TGEIPKWIGRLE-NLAILKLSNNSF 523
Query: 224 SGGIPVGFGNLSNMIKCNLES 244
SG IP G+ ++I +L +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNT 544
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 5 CGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVD 64
C P + L L N G IPP + N S LVSL GT+P+ L L +
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK----- 440
Query: 65 LSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLL 124
LR L N + G IPQ++ + L L LD N+L G +
Sbjct: 441 --------------------LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEI 479
Query: 125 PSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI 183
PS + N +N+ I L N L+G + I L NL L L N+ G +P + + +
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 184 LELSKNLFSCLIP 196
L+L+ NLF+ IP
Sbjct: 540 LDLNTNLFNGTIP 552
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 108/272 (39%), Gaps = 46/272 (16%)
Query: 22 LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81
L G I + L L + F G +P L+ L+ + L+ G +PD SG
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
C L L S N G +P G+ + L L L NN L + ++V+ L
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 142 NHLSGHLRSSIY--------------------LPN--------LENLFLWQNNLCGIVPD 173
N SG L S+ LPN L+ L+L N G +P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN 233
++ N SE+ L LS N SG P+S+G+LS L + L G IP
Sbjct: 410 TLSNCSELVSLHLSFNYL-------SGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQEL-- 459
Query: 234 LSNMIKCNLESLFGLLLGGDALEGQIPTCLAN 265
M LE+ L+L + L G+IP+ L+N
Sbjct: 460 ---MYVKTLET---LILDFNDLTGEIPSGLSN 485
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 23 GGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDC 82
GG P N ++ L G +P E+ + L I++L I GS+PD+ GD
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDL 676
Query: 83 IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSV 127
L L S NK+ G IPQ + LT L E+ L NNL +G +P +
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL-SGPIPEM 720
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 29/235 (12%)
Query: 15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
+SL N L G IP IG L L L SF G +P EL + L +DL++ + G++
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 75 PD-------DTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN--------- 118
P + + I +R + N GNL E + + N
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 119 ----LQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPD 173
+ G N+ ++ + + N LSG++ I +P L L L N++ G +PD
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
+ + + IL+LS N IP T L S+ LSG IP
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSAL--------TMLTEIDLSNNNLSGPIP 718
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 22 LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81
L G IP IG++ +L L G++P+E+ L+ L I+DLSS + G +P S
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA- 699
Query: 82 CIMLRRLSFSFNKIRGWIPQ 101
ML + S N + G IP+
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE 719
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 45/233 (19%)
Query: 60 LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
L +D+SS +P GDC L+ L S NK+ G + I TEL L + N
Sbjct: 199 LEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRS--SIYLPNLENLFLWQNNLCGIVP----- 172
G +P + S +Q + L N +G + S L L L N+ G VP
Sbjct: 257 -VGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 173 --------------------DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212
D++ + +L+LS N F SG P S+ NLS S
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-------SGELPESLTNLSAS 366
Query: 213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLAN 265
L SS SG I L N+ + +L L L + G+IP L+N
Sbjct: 367 LLTLDLSSNNFSGPI------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
L+L + + G+IP +G+L L L + G +P + L L +DLS+ + G +
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 75 PD 76
P+
Sbjct: 718 PE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 37/261 (14%)
Query: 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGII 70
+T L L G +PP G+ S L SL + +F G LP + L +++ L+++DLS
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 71 PGSLPD------------DTSGDCI--------------MLRRLSFSFNKIRGWIPQKIG 104
G LP+ D S + L+ L N G IP +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL-RSSIYLPNLENLFLW 163
N +ELV L+L N L +G +PS + + S ++ + L+ N L G + + +Y+ LE L L
Sbjct: 416 NCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 164 QNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQL 223
N+L G +P + N + + + LS N +G P IG L +L S+
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRL-------TGEIPKWIGRLE-NLAILKLSNNSF 526
Query: 224 SGGIPVGFGNLSNMIKCNLES 244
SG IP G+ ++I +L +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNT 547
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 5 CGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVD 64
C P + L L N G IPP + N S LVSL GT+P+ L L +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK----- 443
Query: 65 LSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLL 124
LR L N + G IPQ++ + L L LD N+L G +
Sbjct: 444 --------------------LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEI 482
Query: 125 PSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI 183
PS + N +N+ I L N L+G + I L NL L L N+ G +P + + +
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 184 LELSKNLFSCLIP 196
L+L+ NLF+ IP
Sbjct: 543 LDLNTNLFNGTIP 555
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 108/272 (39%), Gaps = 46/272 (16%)
Query: 22 LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81
L G I + L L + F G +P L+ L+ + L+ G +PD SG
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
C L L S N G +P G+ + L L L NN L + ++V+ L
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 142 NHLSGHLRSSIY--------------------LPN--------LENLFLWQNNLCGIVPD 173
N SG L S+ LPN L+ L+L N G +P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN 233
++ N SE+ L LS N SG P+S+G+LS L + L G IP
Sbjct: 413 TLSNCSELVSLHLSFNYL-------SGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQEL-- 462
Query: 234 LSNMIKCNLESLFGLLLGGDALEGQIPTCLAN 265
M LE+ L+L + L G+IP+ L+N
Sbjct: 463 ---MYVKTLET---LILDFNDLTGEIPSGLSN 488
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 23 GGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDC 82
GG P N ++ L G +P E+ + L I++L I GS+PD+ GD
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDL 679
Query: 83 IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSV 127
L L S NK+ G IPQ + LT L E+ L NNL +G +P +
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL-SGPIPEM 723
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 29/235 (12%)
Query: 15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
+SL N L G IP IG L L L SF G +P EL + L +DL++ + G++
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 75 PD-------DTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN--------- 118
P + + I +R + N GNL E + + N
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 119 ----LQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPD 173
+ G N+ ++ + + N LSG++ I +P L L L N++ G +PD
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
+ + + IL+LS N IP T L S+ LSG IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSAL--------TMLTEIDLSNNNLSGPIP 721
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 22 LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81
L G IP IG++ +L L G++P+E+ L+ L I+DLSS + G +P S
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA- 702
Query: 82 CIMLRRLSFSFNKIRGWIPQ 101
ML + S N + G IP+
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE 722
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 45/233 (19%)
Query: 60 LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
L +D+SS +P GDC L+ L S NK+ G + I TEL L + N
Sbjct: 202 LEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRS--SIYLPNLENLFLWQNNLCGIVP----- 172
G +P + S +Q + L N +G + S L L L N+ G VP
Sbjct: 260 -VGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 173 --------------------DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212
D++ + +L+LS N F SG P S+ NLS S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-------SGELPESLTNLSAS 369
Query: 213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLAN 265
L SS SG I L N+ + +L L L + G+IP L+N
Sbjct: 370 LLTLDLSSNNFSGPI------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
L+L + + G+IP +G+L L L + G +P + L L +DLS+ + G +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 75 PD 76
P+
Sbjct: 721 PE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF- 92
S+L + +++ G L + Q R+ +DLS +P P +S L L+F +
Sbjct: 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYI 83
Query: 93 ---NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLR 149
N + G IP I LT+L LY+ N+ +G +P + + + N LSG L
Sbjct: 84 GGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 150 SSI-YLPNLENLFLWQNNLCGIVPDSICNASEV-TILELSKNLFSCLIPNTSGVFPNSIG 207
SI LPNL + N + G +PDS + S++ T + +S+N +G P +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-------TGKIPPTFA 195
Query: 208 NLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES 244
NL+ + + S L G V FG+ N K +L
Sbjct: 196 NLNLAFVDL--SRNMLEGDASVLFGSDKNTQKIHLAK 230
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 4/176 (2%)
Query: 22 LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81
+ G IP + + LV+L + GTLP + L L + I G++PD
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILY 140
+ ++ S N++ G IP NL L + L N L+ SV+F S N Q I L
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLA 229
Query: 141 GNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIP 196
N L+ L NL L L N + G +P + + L +S N IP
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 99 IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNL 157
IP + NL L LY+ G N G +P I + + + + ++SG + + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 158 ENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFY 217
L N L G +P SI + + + N SG P+S G+ S +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-------RISGAIPDSYGSFSKLFTSMT 180
Query: 218 ASSCQLSGGIPVGFGNLS--------NMIKCNLESLFG 247
S +L+G IP F NL+ NM++ + LFG
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 16/188 (8%)
Query: 14 ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGS 73
AL L NL + I +I FL L S LP E+ L LR++DLS + S
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL-TS 284
Query: 74 LPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN 133
LP + G C L+ F F+ + +P + GNL L L ++GN L+ L + S
Sbjct: 285 LPAEL-GSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT 342
Query: 134 IQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP---DSICNASEVTILELSKNL 190
+ L N R I LP+ E F+ + N G DS+ ++E +L+K
Sbjct: 343 GLIFYLRDN------RPEIPLPH-ERRFI-EINTDGEPQREYDSLQQSTEHLATDLAKRT 394
Query: 191 FSCLIPNT 198
F+ L NT
Sbjct: 395 FTVLSYNT 402
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 63 VDLSSG---IIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
VD SS IP ++P DT ++L NK+ + LT+L LYL+ N L
Sbjct: 21 VDCSSKKLTAIPSNIPADT-------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 120 QAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSIC 176
Q LP+ IF N++ + + N L L ++ L NL L L +N L + P
Sbjct: 74 QT--LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 177 NASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLS 235
+ +++T L L N L P + + TSL+ + QL +P G F L+
Sbjct: 131 SLTKLTYLSLGYNELQSL--------PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181
Query: 236 NMIKCNLES 244
+ L++
Sbjct: 182 ELKTLKLDN 190
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 103 IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYL--PNLENL 160
G L LV+L L N L G+ P+ +S+IQ + L N + + + ++L L+ L
Sbjct: 50 FGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107
Query: 161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
L+ N + ++P S + + +T L L+ N F+C
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 54 LWQLQRLRIVDLSSGIIPGSLPDD-----------TSGDCIMLR------RLSFSFNKIR 96
+ +L +RI D + IP LP T D L+ +L SFN I
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 97 GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG 146
+ N L EL+L+ N L +P + + IQV+ L+ N++S
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 54 LWQLQRLRIVDLSSGIIPGSLPDD-----------TSGDCIMLR------RLSFSFNKIR 96
+ +L +RI D + IP LP T D L+ +L SFN I
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 97 GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG 146
+ N L EL+L+ N L +P + + IQV+ L+ N++S
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISA 277
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 106 LTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSIY-LPNLENLFLW 163
L L LYL NNLQA LP F N+ + L+GN + + L +L+ L L
Sbjct: 127 LAALQYLYLQDNNLQA--LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 164 QNNLCGIVPDSICNASEVTILELSKNLFSCL 194
QN++ + P + + + L L N S L
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 101 QKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLE 158
+ +GNLT L +L GN + + +P F ++ ++L+ NH++ H + L L
Sbjct: 149 RDLGNLTHL---FLHGNRIPS--VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLM 203
Query: 159 NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
L+L+ NNL + + + + L L+ N + C
Sbjct: 204 TLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVC 238
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 47 YGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNL 106
+ +P EL + L ++DLS+ I +L + + + L L S+N++R P+ L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101
Query: 107 TELVELYLDGNNLQAGLLPSVIFNS 131
L L L GN++ ++P FN
Sbjct: 102 KSLRLLSLHGNDI--SVVPEGAFND 124
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 81 DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140
+C L + NK +P+ I ++ ELYLDGN Q L+P + N ++ +I L
Sbjct: 7 ECTCLDTVVRCSNKGLKVLPKGIPR--DVTELYLDGN--QFTLVPKELSNYKHLTLIDLS 62
Query: 141 GNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192
N +S S + L L L N L I P + + +L L N S
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 85 LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
L L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N+L
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL 161
Query: 145 SGHLRSSIY--LPNLENLFLWQNNLCGI 170
+ L + + L NL+ L L +N+L I
Sbjct: 162 T-ELPAGLLNGLENLDTLLLQENSLYTI 188
>pdb|2WNP|F Chain F, M-Ficolin Mutant Y271f
Length = 217
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 73 SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS 132
+ D G + RR+ S + R W K G ++L E +L +N+ A L + +
Sbjct: 38 DMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHA--LTAQGSSEL 95
Query: 133 NIQVIILYGNHLSGHLRS 150
+ ++ GNH +S
Sbjct: 96 RVDLVDFEGNHQFAKYKS 113
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N+L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSS 151
N+I P +L L ELYL N L G LP +F+S + + V+ L N L+ L S+
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTV-LPSA 106
Query: 152 IY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
++ L +L+ LF+ N L + P I + +T L L +N
Sbjct: 107 VFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN 145
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 85 LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
L L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL 160
Query: 145 SGHLRSSIY--LPNLENLFLWQNNLCGI 170
+ L + + L NL+ L L +N+L I
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N+L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|2D39|A Chain A, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|B Chain B, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|C Chain C, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
Length = 237
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 73 SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS 132
+ D G + RR+ S + R W K G ++L E +L +N+ A L + +
Sbjct: 35 DMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHA--LTAQGSSEL 92
Query: 133 NIQVIILYGNHLSGHLRS 150
+ ++ GNH +S
Sbjct: 93 RVDLVDFEGNHQFAKYKS 110
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 85 LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
L L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNDL 160
Query: 145 SGHLRSSIY--LPNLENLFLWQNNLCGI 170
+ L + + L NL+ L L +N+L I
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147
L SFN++ + L EL ELYL GN L+ L P ++ + ++ + L N+L+
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-E 162
Query: 148 LRSSIY--LPNLENLFLWQNNLCGI 170
L + + L NL+ L L +N+L I
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 85 LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
LRR+ S N+I P L L L L GN + LP +F ++L +
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANK 115
Query: 145 SGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
LR + L NL L L+ N L I + + + L++N F C
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 36/149 (24%)
Query: 73 SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS 132
SLP+ L L+ S N+++ LT+L EL L+ N LQ+ LP +F+
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS--LPDGVFDK- 122
Query: 133 NIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNA-SEVTILELSKNLF 191
L L++L L+QN L VPD + + + + + L N +
Sbjct: 123 ---------------------LTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW 160
Query: 192 SCLIP----------NTSGVFPNSIGNLS 210
C P SGV NS G+++
Sbjct: 161 DCTCPGIRYLSEWINKHSGVVRNSAGSVA 189
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 83 IMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILY 140
+ L++L F+ NK+ IP + LT+L +L L+ N+L++ +P F++ ++ I LY
Sbjct: 57 VNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLTHIYLY 113
Query: 141 GNHLSGHLRSSIYLPN 156
N R +YL N
Sbjct: 114 NNPWDCECRDIMYLRN 129
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 70 IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
+P +P D +RL + N+I P +L L +LY + N L A +P+ +F
Sbjct: 27 VPAGIPTDK-------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVF 77
Query: 130 NS-SNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQN 165
+ + + + L NHL R + L +L +++L+ N
Sbjct: 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 41 SVAKSFYGTLPNELWQLQRLRIVDLSS--GIIPGSL 74
++A+ TLP + W QR R+V+ +S G++ GSL
Sbjct: 212 ALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSL 247
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 85 LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
LRR+ S N+I P L L L L GN + LP +F ++L +
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANK 115
Query: 145 SGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
LR + L NL L L+ N L I + + + L++N F C
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI-YLPNLENLFL 162
+LT+L +LYL GN L++ LPS +F+ + ++ + L N L + L NL+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 163 WQNNLCGIVPDSICNASEVTILELSKNLFSC 193
N L + + ++ + L N F C
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 73 SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS- 131
SLP L +LS S N+I+ LT+L LYL N LQ+ LP+ +F+
Sbjct: 42 SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LPNGVFDKL 99
Query: 132 SNIQVIILYGNHLSG 146
+ ++ + L N L
Sbjct: 100 TQLKELALDTNQLKS 114
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 87 RLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLS 145
RL NK++ LT+L +L L N +Q+ LP +F+ + + ++ L+ N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENKLQ 89
Query: 146 GHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNA-SEVTILELSKNLFSCLIPN 197
L + ++ L L+ L L N L VPD I + + + + L N + C P
Sbjct: 90 S-LPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI-YLPNLENLFL 162
+LT+L +LYL GN L++ LPS +F+ + ++ + L N L + L NL+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 163 WQNNLCGIVPDSICNASEVTILELSKNLFSC 193
N L + + ++ + L N F C
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 128 IFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLW---QNNLCGIV 171
+F N + + + N + L SSI+ +L +F W + + CGIV
Sbjct: 408 VFKFQNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIV 454
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 101 QKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLE 158
+ +GNLT L +L GN + + +P F ++ ++L+ N ++ H + L L
Sbjct: 150 RDLGNLTHL---FLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 159 NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
L+L+ NNL + +++ + L L+ N + C
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 101 QKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLE 158
+ +GNLT L +L GN + + +P F ++ ++L+ N ++ H + L L
Sbjct: 149 RDLGNLTHL---FLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 203
Query: 159 NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
L+L+ NNL + +++ + L L+ N + C
Sbjct: 204 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 36/169 (21%)
Query: 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ-----AGL--LPSVIFNS--------- 131
L N+I P K NLT++ EL L GN L+ AGL + ++ S
Sbjct: 74 LELKDNQITDLTPLK--NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 131
Query: 132 ---SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
SN+QV+ L N ++ ++ L NL+ L + N + + P + N S++T L
Sbjct: 132 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADD 188
Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNM 237
N S + P S PN I + Q+S P NLSN+
Sbjct: 189 NKISDISPLAS--LPNLI--------EVHLKDNQISDVSP--LANLSNL 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,928,627
Number of Sequences: 62578
Number of extensions: 314400
Number of successful extensions: 813
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 116
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)