Query 039577
Match_columns 282
No_of_seqs 131 out of 2609
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 11:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.2E-32 1.6E-36 255.9 18.1 275 1-281 61-370 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-30 4.2E-35 246.1 17.0 270 9-281 139-442 (968)
3 KOG0444 Cytoskeletal regulator 99.9 4.7E-27 1E-31 200.0 -4.9 256 9-279 77-351 (1255)
4 KOG4194 Membrane glycoprotein 99.9 6.4E-25 1.4E-29 185.3 6.2 261 9-280 77-354 (873)
5 KOG4194 Membrane glycoprotein 99.9 8.7E-25 1.9E-29 184.5 3.4 222 9-241 124-347 (873)
6 KOG0444 Cytoskeletal regulator 99.9 4.9E-25 1.1E-29 187.8 -2.7 245 10-278 103-373 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2.2E-24 4.7E-29 174.7 -7.1 38 242-280 504-541 (565)
8 PLN03210 Resistant to P. syrin 99.8 8.6E-19 1.9E-23 168.1 19.1 249 9-277 588-879 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 1.8E-23 3.8E-28 169.5 -11.4 243 11-281 46-289 (565)
10 PRK15370 E3 ubiquitin-protein 99.8 6.5E-19 1.4E-23 159.6 10.6 225 11-280 200-428 (754)
11 PRK15387 E3 ubiquitin-protein 99.8 2.7E-18 5.8E-23 155.0 14.0 38 243-281 422-459 (788)
12 PLN03210 Resistant to P. syrin 99.8 2.3E-17 4.9E-22 158.4 17.2 249 9-278 610-904 (1153)
13 PRK15370 E3 ubiquitin-protein 99.7 1E-17 2.2E-22 151.9 11.6 226 9-281 177-402 (754)
14 KOG0618 Serine/threonine phosp 99.7 7E-20 1.5E-24 162.2 -3.1 252 9-278 218-487 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-19 3.6E-24 151.0 -5.6 15 56-70 79-93 (319)
16 KOG0617 Ras suppressor protein 99.7 4.8E-19 1E-23 128.3 -4.2 164 32-233 31-194 (264)
17 KOG0617 Ras suppressor protein 99.7 7.9E-19 1.7E-23 127.2 -3.8 163 9-178 32-195 (264)
18 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.9E-23 154.2 -3.6 243 9-277 240-510 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-18 4.8E-23 144.2 -4.3 259 14-281 2-292 (319)
20 KOG4237 Extracellular matrix p 99.7 1E-18 2.2E-23 141.7 -6.4 253 9-280 66-359 (498)
21 PRK15387 E3 ubiquitin-protein 99.6 3.9E-15 8.5E-20 134.8 13.9 223 10-280 201-435 (788)
22 KOG4237 Extracellular matrix p 99.5 3.5E-16 7.7E-21 127.1 -2.6 181 9-192 90-359 (498)
23 KOG1909 Ran GTPase-activating 99.3 4.1E-14 9E-19 113.5 -5.3 88 9-96 29-133 (382)
24 PLN03150 hypothetical protein; 99.2 1.9E-11 4.2E-16 110.5 8.4 118 1-119 405-527 (623)
25 KOG1259 Nischarin, modulator o 99.2 7.9E-12 1.7E-16 98.9 2.5 222 33-281 181-413 (490)
26 KOG0532 Leucine-rich repeat (L 99.2 5.3E-13 1.1E-17 113.6 -4.6 177 61-264 78-254 (722)
27 KOG3207 Beta-tubulin folding c 99.2 2.3E-12 5.1E-17 106.4 -1.3 159 33-192 120-284 (505)
28 KOG1909 Ran GTPase-activating 99.2 6.7E-13 1.5E-17 106.6 -4.8 245 28-280 24-311 (382)
29 COG4886 Leucine-rich repeat (L 99.1 4.6E-11 9.9E-16 103.0 5.5 177 31-224 113-290 (394)
30 COG4886 Leucine-rich repeat (L 99.1 8E-11 1.7E-15 101.5 5.7 176 81-280 114-290 (394)
31 KOG0532 Leucine-rich repeat (L 99.1 2.1E-12 4.7E-17 109.9 -4.3 168 88-280 80-247 (722)
32 KOG3207 Beta-tubulin folding c 99.1 8.6E-12 1.9E-16 103.1 -2.2 215 55-280 118-339 (505)
33 KOG4658 Apoptotic ATPase [Sign 99.0 9.7E-11 2.1E-15 108.6 3.0 105 11-117 546-652 (889)
34 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.6E-15 85.3 3.9 122 57-186 18-147 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 6E-10 1.3E-14 83.7 5.4 127 30-162 15-147 (175)
36 PLN03150 hypothetical protein; 98.9 4E-09 8.6E-14 95.6 7.5 106 36-143 420-526 (623)
37 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.2E-14 100.1 4.4 255 10-280 523-807 (889)
38 PF13855 LRR_8: Leucine rich r 98.8 5.6E-09 1.2E-13 64.6 4.4 60 212-279 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 1.3E-08 2.7E-13 63.0 4.9 59 11-69 2-60 (61)
40 KOG1259 Nischarin, modulator o 98.7 8.6E-10 1.9E-14 87.6 -1.6 130 31-168 281-412 (490)
41 COG5238 RNA1 Ran GTPase-activa 98.7 8.5E-10 1.9E-14 86.3 -3.7 243 10-280 30-316 (388)
42 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.8E-13 88.3 -1.2 108 30-145 91-199 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 5.5E-10 1.2E-14 88.5 -8.9 179 35-221 186-373 (419)
44 KOG0531 Protein phosphatase 1, 98.4 6.1E-08 1.3E-12 84.1 -0.6 217 33-279 71-289 (414)
45 KOG2120 SCF ubiquitin ligase, 98.3 2.8E-09 6.1E-14 84.6 -9.8 181 58-252 185-372 (419)
46 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.6E-12 75.5 -1.1 84 10-93 71-156 (418)
47 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.3E-11 50.0 3.0 37 244-281 2-38 (44)
48 KOG1859 Leucine-rich repeat pr 98.2 2.2E-07 4.9E-12 82.3 -1.2 156 100-281 102-268 (1096)
49 KOG1859 Leucine-rich repeat pr 98.1 7.7E-08 1.7E-12 85.1 -6.2 126 59-192 165-292 (1096)
50 PRK15386 type III secretion pr 97.9 5.6E-05 1.2E-09 64.2 7.6 136 81-253 50-187 (426)
51 KOG2982 Uncharacterized conser 97.9 1.9E-06 4E-11 68.9 -1.1 135 56-192 69-212 (418)
52 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.7E-10 45.6 2.2 36 35-71 2-37 (44)
53 KOG1644 U2-associated snRNP A' 97.8 7.5E-05 1.6E-09 56.5 6.4 102 83-189 42-150 (233)
54 PRK15386 type III secretion pr 97.8 0.00025 5.5E-09 60.4 10.0 55 32-93 50-104 (426)
55 COG5238 RNA1 Ran GTPase-activa 97.7 8.3E-06 1.8E-10 64.5 0.3 218 54-281 26-286 (388)
56 KOG1644 U2-associated snRNP A' 97.7 8.9E-05 1.9E-09 56.1 5.7 105 35-142 43-150 (233)
57 KOG3665 ZYG-1-like serine/thre 97.7 3.4E-06 7.4E-11 77.0 -2.3 155 107-273 122-281 (699)
58 KOG4579 Leucine-rich repeat (L 97.6 3.8E-06 8.3E-11 59.5 -2.2 126 134-280 29-159 (177)
59 KOG4579 Leucine-rich repeat (L 97.5 3E-06 6.5E-11 60.0 -3.9 110 108-230 28-141 (177)
60 KOG3665 ZYG-1-like serine/thre 97.5 2.7E-05 5.8E-10 71.3 0.8 130 132-281 122-264 (699)
61 KOG2123 Uncharacterized conser 97.1 5.4E-06 1.2E-10 65.7 -7.8 101 9-114 18-124 (388)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00028 6E-09 55.6 1.1 128 11-143 19-154 (260)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00061 1.3E-08 53.7 2.1 65 31-96 62-129 (260)
64 PF13306 LRR_5: Leucine rich r 96.6 0.016 3.5E-07 41.2 7.9 85 29-117 7-91 (129)
65 KOG4341 F-box protein containi 96.6 1.4E-05 3.1E-10 66.7 -9.3 85 10-94 138-227 (483)
66 PF00560 LRR_1: Leucine Rich R 96.4 0.0024 5.1E-08 30.2 1.6 19 245-264 2-20 (22)
67 PF13306 LRR_5: Leucine rich r 95.9 0.066 1.4E-06 38.0 8.0 102 10-117 12-113 (129)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.6E-08 29.6 0.7 21 212-233 1-21 (22)
69 KOG4341 F-box protein containi 95.5 6E-05 1.3E-09 63.1 -10.4 86 34-119 138-228 (483)
70 KOG2123 Uncharacterized conser 94.7 0.00066 1.4E-08 54.2 -6.2 99 33-138 18-123 (388)
71 KOG3864 Uncharacterized conser 93.9 0.0051 1.1E-07 46.8 -2.6 84 155-244 101-185 (221)
72 PF13504 LRR_7: Leucine rich r 93.8 0.048 1E-06 23.8 1.4 14 267-280 1-14 (17)
73 PF13516 LRR_6: Leucine Rich r 93.5 0.027 5.9E-07 27.0 0.4 21 243-263 2-22 (24)
74 KOG3864 Uncharacterized conser 92.0 0.038 8.1E-07 42.3 -0.4 35 242-276 150-185 (221)
75 KOG4308 LRR-containing protein 90.5 0.00077 1.7E-08 59.2 -12.4 172 103-281 111-304 (478)
76 smart00369 LRR_TYP Leucine-ric 88.6 0.39 8.6E-06 23.3 1.7 18 58-76 2-19 (26)
77 smart00370 LRR Leucine-rich re 88.6 0.39 8.6E-06 23.3 1.7 18 58-76 2-19 (26)
78 KOG1947 Leucine rich repeat pr 87.0 0.13 2.7E-06 45.6 -1.1 114 154-278 187-306 (482)
79 KOG1947 Leucine rich repeat pr 84.4 0.1 2.3E-06 46.1 -2.9 11 212-222 363-373 (482)
80 smart00365 LRR_SD22 Leucine-ri 83.3 0.93 2E-05 22.3 1.5 13 268-280 3-15 (26)
81 smart00368 LRR_RI Leucine rich 82.8 0.57 1.2E-05 23.4 0.6 16 243-258 2-17 (28)
82 KOG0473 Leucine-rich repeat pr 75.3 0.037 8.1E-07 43.4 -7.5 87 29-119 37-123 (326)
83 smart00364 LRR_BAC Leucine-ric 74.4 2 4.3E-05 21.1 1.1 13 212-224 3-15 (26)
84 KOG0473 Leucine-rich repeat pr 74.3 0.055 1.2E-06 42.4 -6.8 86 9-98 41-126 (326)
85 smart00367 LRR_CC Leucine-rich 65.9 4 8.6E-05 19.7 1.1 15 266-280 1-16 (26)
86 KOG4242 Predicted myosin-I-bin 60.1 16 0.00036 32.2 4.4 66 9-76 164-232 (553)
87 KOG3763 mRNA export factor TAP 48.6 9.2 0.0002 34.3 1.2 64 153-224 216-283 (585)
88 KOG4308 LRR-containing protein 45.2 0.6 1.3E-05 41.4 -6.6 114 157-281 89-218 (478)
89 KOG3763 mRNA export factor TAP 42.2 17 0.00036 32.8 1.7 64 105-168 216-283 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=7.2e-32 Score=255.86 Aligned_cols=275 Identities=30% Similarity=0.467 Sum_probs=195.7
Q ss_pred CCeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCcc
Q 039577 1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTS 79 (282)
Q Consensus 1 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~ 79 (282)
+||+|+. .+++++|+++++.+.+.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|.
T Consensus 61 ~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--- 136 (968)
T PLN00113 61 QGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--- 136 (968)
T ss_pred cceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---
Confidence 4899986 57999999999999998888899999999999999999888887766 889999999999988766665
Q ss_pred CCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCcc
Q 039577 80 GDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLE 158 (282)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~ 158 (282)
..+++|++|++++|.+.+..|..++.+++|++|++++|.+ .+..|..+.++++|++|++++|.+....+..+ .+.+|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 3467777777777777666676777777777777777766 34456666677777777777776665555555 566677
Q ss_pred EEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCC-----------------CCCCCCcccccccccceEEeecc
Q 039577 159 NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT-----------------SGVFPNSIGNLSTSLENFYASSC 221 (282)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~L~~L~l~~n 221 (282)
.|++++|.+++.+|..+..+++|++|++++|.+.+..|.. .+.+|.++..++ +|++|++++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCC
Confidence 7777766666566666666666666666666665433321 122344455555 6777777777
Q ss_pred cceecCCccccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 222 QLSGGIPVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 222 ~~~~~~~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+.+.+|..+.++++|+.|+ +++|+.|++++|.+.+.+|..+..+++|+.+++++|++++
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 66666666666666666554 3456667777777766666667777777777777776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2e-30 Score=246.12 Aligned_cols=270 Identities=33% Similarity=0.487 Sum_probs=173.3
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEE
Confidence 45677777777777777777777777777777777777766777777777777777777777655565 56667777777
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
++.+|.+.+.+|..+..+++|++|++++|.+ .+..|..+.++++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCcee-ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 7777766655666666667777777766665 34455556666666666666666654444444 555666666666655
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCC-----------------CCCCCCcccccccccceEEeecccceecCCcc
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNT-----------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 230 (282)
.+.+|..+..+++|++|++++|.+.+..|.. .+.+|..+..++ +|+.|++++|.+.+.+|.+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChh
Confidence 5555555555555555555555554333221 123344455555 6777777777666666665
Q ss_pred ccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 231 FGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 231 ~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+..+.+++.++ +++|++|++++|.+++.+|..+..+++|+.+++++|.+++
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 55555554443 3467777777777777777777777777777777776654
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=4.7e-27 Score=199.99 Aligned_cols=256 Identities=26% Similarity=0.341 Sum_probs=166.7
Q ss_pred CCceEEEEcCCCcccc-CCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGG-TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
.+++|++.+..|++.. -+|..+..+..|.+|||+.|.+. .+|..+-+.+++-.|++++|++. .+|...+.++..|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 4677788888887764 37778888889999999988886 68888888889999999999986 888767788888999
Q ss_pred EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccc-ccCCCCc-CCCCccEEEeecC
Q 039577 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS-GHLRSSI-YLPNLENLFLWQN 165 (282)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~ 165 (282)
|++++|++. .+|+.+..+.+|++|++++|.+ ...--..+..+++|+.|+++++.-+ ..+|..+ .+.+|+.++++.|
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 999999988 6888888999999999999876 2111122334555666666655433 2344444 5666666666666
Q ss_pred cceeeccchhhCCCCCcEEeccCcccceecCC---C------------CCCCCCcccccccccceEEeecccce-ecCCc
Q 039577 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPN---T------------SGVFPNSIGNLSTSLENFYASSCQLS-GGIPV 229 (282)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~------------~~~l~~~~~~~~~~L~~L~l~~n~~~-~~~~~ 229 (282)
.+. .+|..+..+++|+.|++++|.++....- | +..+|..+.+++ .|++|.+.+|+++ .-+|.
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~-kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT-KLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH-HHHHHHhccCcccccCCcc
Confidence 665 5666666666666666666666522100 0 114444444444 4555555444433 12344
Q ss_pred cccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccC
Q 039577 230 GFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279 (282)
Q Consensus 230 ~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~ 279 (282)
+++++.+ |+.+...+|.+. .+|+++++|+.|+.|.++.|++
T Consensus 311 GIGKL~~--------Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 311 GIGKLIQ--------LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred chhhhhh--------hHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 4554443 444555555554 5556666666666666655553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.4e-25 Score=185.34 Aligned_cols=261 Identities=19% Similarity=0.154 Sum_probs=202.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
|...++|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.+. ++....++.++.|++|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhh
Confidence 566788999999988777778889999999999998887 57776656677999999999986 6766678889999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
+++.|.+...--..|..-.++++|+++.|+++.-. ...|..+.+|..|.++.|+++..+...+ ++++|+.|++..|++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 99999888432345666688999999999996522 2357778899999999999998887888 699999999999988
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc------
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------ 241 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------ 241 (282)
.-.--.++.++++|+.|.+..|.+... .+ ..+..+. ++++|++..|+++..-..|+..+..|+.|+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL-~D------G~Fy~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKL-DD------GAFYGLE-KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccc-cC------cceeeec-ccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 633245678889999999999988732 12 1344455 888889988888866667888888877776
Q ss_pred ----------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 242 ----------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 242 ----------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
.++|++|++++|+++...+..|.-+..|++|+++.|+|+
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 567888888888888555555665556666666655553
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=8.7e-25 Score=184.53 Aligned_cols=222 Identities=20% Similarity=0.156 Sum_probs=132.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+|+++|+|.+|-++..-...+..++.|++|||+.|.++..--+++..-.++++|++++|.++ .+..+.|..+.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheee
Confidence 567888888888776544556677788888888887776432334445577888888888876 5665567777777777
Q ss_pred EcccCeecccCCc-CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577 89 SFSFNKIRGWIPQ-KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN 166 (282)
Q Consensus 89 ~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 166 (282)
.++.|+++ .+|. .|+.+++|+.|++..|++.... --.|..+++|+.|.+..|++...-...+ .+.++++|++..|+
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 77777777 3443 4566777888888777763311 1134556666666666666653333333 45566666666665
Q ss_pred ceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc
Q 039577 167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN 241 (282)
Q Consensus 167 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~ 241 (282)
++..-..++.++.+|+.|++++|.|....++ .+...+ +|++|+++.|+++..-+..+.-+..|+.|+
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------SWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecc-------hhhhcc-cceeEeccccccccCChhHHHHHHHhhhhc
Confidence 5533333444555566666666655533222 222233 555555555555533333444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.9e-25 Score=187.77 Aligned_cols=245 Identities=28% Similarity=0.410 Sum_probs=188.0
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
..++.|||++|.+. ++|..+.+-+++-+|+|++|.+. .+|..++ ++..|-.||+++|.+. .+|+ .+..+..|++|
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL 178 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTL 178 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCH-HHHHHhhhhhh
Confidence 45677777777764 46666666677777777777665 3454433 5566666666666654 5554 44444444444
Q ss_pred EcccCeec-------------------------ccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc
Q 039577 89 SFSFNKIR-------------------------GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH 143 (282)
Q Consensus 89 ~l~~~~~~-------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 143 (282)
.+++|.+. ..+|.++..+.+|..+|++.|.++. +|..+..+++|+.|++++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCc
Confidence 44444321 2467778888999999999999866 88889999999999999999
Q ss_pred ccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccc
Q 039577 144 LSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQL 223 (282)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~ 223 (282)
++......-.+.+|++|.++.|+++ .+|..+++++.|+.|.+.+|+++ .+.+|..++++. .|+++..++|.+
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~------FeGiPSGIGKL~-~Levf~aanN~L 328 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT------FEGIPSGIGKLI-QLEVFHAANNKL 328 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc------ccCCccchhhhh-hhHHHHhhcccc
Confidence 9855443337899999999999998 99999999999999999999887 347888899998 999999999998
Q ss_pred eecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577 224 SGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 224 ~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 278 (282)
. .+|.++.+|. +|+.|.+++|++- ++|+.+.-++.|..||+..|.
T Consensus 329 E-lVPEglcRC~--------kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 329 E-LVPEGLCRCV--------KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred c-cCchhhhhhH--------HHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 7 8999999874 5667777888887 789999999999999998874
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.2e-24 Score=174.74 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=35.2
Q ss_pred ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 242 l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
+.+|..||+.+|.+. .+|..+++|.+|++++++||.|+
T Consensus 504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 568999999999998 89999999999999999999985
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=8.6e-19 Score=168.05 Aligned_cols=249 Identities=22% Similarity=0.249 Sum_probs=153.8
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++.++.|++.++.+ ..+|..+ ...+|+.|++.++.+. .++..+..+++|+.++++++.....+|. +..+++|++|
T Consensus 588 p~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence 45577777776655 3455544 4567777787777765 4566667777888888877654345553 5667778888
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++.+|.....+|..+..+++|+.|++++|.. ...+|..+ ++++|+.|++++|......+.. ..+|+.|++++|.+.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE 738 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCC-cCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc
Confidence 8877654445677777777788888877543 23345433 5667777777766543333222 345566666665554
Q ss_pred eeccchh------------------------------hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEe
Q 039577 169 GIVPDSI------------------------------CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYA 218 (282)
Q Consensus 169 ~~~~~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l 218 (282)
.+|..+ ..+++|+.|++++|... ..+|.+++.++ +|+.|++
T Consensus 739 -~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-------~~lP~si~~L~-~L~~L~L 809 (1153)
T PLN03210 739 -EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-------VELPSSIQNLH-KLEHLEI 809 (1153)
T ss_pred -cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-------cccChhhhCCC-CCCEEEC
Confidence 444322 01234444444444322 23555666666 7777777
Q ss_pred ecccceecCCccccCCccCccccc-------------cccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577 219 SSCQLSGGIPVGFGNLSNMIKCNL-------------ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI 277 (282)
Q Consensus 219 ~~n~~~~~~~~~~~~l~~l~~l~l-------------~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 277 (282)
++|...+.+|..+ .+++|+.|++ .+++.|++++|.++ .+|.++..+++|++|++++|
T Consensus 810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 7764433555543 4455555542 35778888888887 67888888888888888874
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.8e-23 Score=169.49 Aligned_cols=243 Identities=26% Similarity=0.362 Sum_probs=157.2
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
.++.+.+++|.+.. +-..+.++.-|.++++.+|.+. ++|++++.+..++.++.++|++. .+|. .+..+.+++.+++
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhc
Confidence 34556666666643 3334566777777777777766 56667777777777777777764 6666 5566677777777
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 170 (282)
+.|.+. .++++++.+..++.++..+|.+.. +|..++++.++..+.+.+|++...++..+.+..|++++...|.+. .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-c
Confidence 777766 466677777777777777777644 666677777777777777777655555556677777777766664 7
Q ss_pred ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcccc-CCccCccccccccceee
Q 039577 171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG-NLSNMIKCNLESLFGLL 249 (282)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~l~~l~l~~l~~L~ 249 (282)
+|+.++.+.+|..|+++.|++. ++| .|.... .|++|++..|.+. .+|.... + ++++..||
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~--------~lP-ef~gcs-~L~Elh~g~N~i~-~lpae~~~~--------L~~l~vLD 258 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR--------FLP-EFPGCS-LLKELHVGENQIE-MLPAEHLKH--------LNSLLVLD 258 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc--------cCC-CCCccH-HHHHHHhcccHHH-hhHHHHhcc--------cccceeee
Confidence 7777777777777777777765 333 344444 5666666666554 4444332 2 25556666
Q ss_pred ccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 250 LGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 250 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+++|.+. ++|..++-+.+|..+|+|+|.|++
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 6666666 566666666666666666666654
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.5e-19 Score=159.62 Aligned_cols=225 Identities=23% Similarity=0.362 Sum_probs=117.5
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
+++.|++++|.++ .+|..+. ++|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|. .+ ..+|+.|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l--~s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RL--PSALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hH--hCCCCEEEC
Confidence 4444444444443 2333222 34555555554443 2333221 24555555555543 4443 11 124555555
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 170 (282)
++|.+. .+|..+. ++|+.|++++|.++. +|..+ ..+|+.|++++|.+...+ ..+ .++|+.|++++|.++ .
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~Lt~LP-~~l-~~sL~~L~Ls~N~Lt-~ 339 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSLTALP-ETL-PPGLKTLEAGENALT-S 339 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCccccCC-ccc-cccceeccccCCccc-c
Confidence 555554 2443332 345555555555532 33222 134555555555554322 111 345666666666665 4
Q ss_pred ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeec
Q 039577 171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLL 250 (282)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l 250 (282)
+|..+ .++|+.|++++|.++ .+|..+ +..|++|++++|.++ .+|..+. .+|+.|++
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~--------~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~----------~sL~~LdL 395 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQIT--------VLPETL---PPTITTLDVSRNALT-NLPENLP----------AALQIMQA 395 (754)
T ss_pred CChhh--cCcccEEECCCCCCC--------cCChhh---cCCcCEEECCCCcCC-CCCHhHH----------HHHHHHhh
Confidence 55443 256677777777665 233222 126777777777766 4554432 35778888
Q ss_pred cCCeeeeecchhhh----ccCCCceeeccCccCC
Q 039577 251 GGDALEGQIPTCLA----NLTSLISLNLRSIRLN 280 (282)
Q Consensus 251 ~~n~~~~~~~~~~~----~l~~L~~l~l~~n~~~ 280 (282)
++|.++ .+|..+. .++.+..+++.+|.|+
T Consensus 396 s~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 396 SRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 899887 5565444 4588899999999886
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=2.7e-18 Score=155.05 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.5
Q ss_pred cccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 243 ~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+|+.|++++|.++ .+|..+..+++|+.+++++|.|+|
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 45788999999998 789999999999999999999987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2.3e-17 Score=158.39 Aligned_cols=249 Identities=20% Similarity=0.214 Sum_probs=143.2
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
+.++++|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|+.|++.+|.....+|. .+..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEE
Confidence 457777777777664 455566677777777777665554555 356677777777777654446665 56677777777
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCC------------------
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRS------------------ 150 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------ 150 (282)
++.+|..-..+|..+ .+++|+.|++++|.. ...+|. ...+|+.|++.++.+...+..
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~-L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSR-LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCC-cccccc---ccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 777654333455443 456666666666543 111221 123444444444443321110
Q ss_pred -----------Cc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCC----------------CCC
Q 039577 151 -----------SI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTS----------------GVF 202 (282)
Q Consensus 151 -----------~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----------------~~l 202 (282)
.. .+++|+.|++++|.....+|..++.+++|+.|++++|..-..+|... ..+
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 00 23567777777776555677777777788888887775433333211 011
Q ss_pred CCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577 203 PNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 278 (282)
| ..+.+|++|++++|.+. .+|.++..+ ++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 842 p----~~~~nL~~L~Ls~n~i~-~iP~si~~l--------~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 842 P----DISTNISDLNLSRTGIE-EVPWWIEKF--------SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c----ccccccCEeECCCCCCc-cChHHHhcC--------CCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 1 11124555555555554 445544443 567777777643333567777778888888887763
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1e-17 Score=151.88 Aligned_cols=226 Identities=22% Similarity=0.335 Sum_probs=176.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
....+.|+++++.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|. .+ ..+|+.|
T Consensus 177 ~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l--~~~L~~L 246 (754)
T PRK15370 177 KNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TL--PDTIQEM 246 (754)
T ss_pred ccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hh--hccccEE
Confidence 356789999998886 4676554 58999999999988 5776554 69999999999987 7776 22 3589999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+. .+|..+. .+|+.|+++.|.++. +|..+. .+|+.|++++|.++..+ ..+ .++|+.|++++|.++
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP-~~l-p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIRTLP-AHL-PSGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccccCc-ccc-hhhHHHHHhcCCccc
Confidence 99999988 5776653 579999999999853 666443 58999999999987543 333 357899999999987
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L 248 (282)
.+|..+ .++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|
T Consensus 318 -~LP~~l--~~sL~~L~Ls~N~Lt--------~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp----------~~L~~L 372 (754)
T PRK15370 318 -ALPETL--PPGLKTLEAGENALT--------SLPASLP---PELQVLDVSKNQIT-VLPETLP----------PTITTL 372 (754)
T ss_pred -cCCccc--cccceeccccCCccc--------cCChhhc---CcccEEECCCCCCC-cCChhhc----------CCcCEE
Confidence 667544 368999999999887 3443332 38999999999987 5665442 578999
Q ss_pred eccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
++++|.++ .+|..+. ++|+.|++++|+|++
T Consensus 373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 373 DVSRNALT-NLPENLP--AALQIMQASRNNLVR 402 (754)
T ss_pred ECCCCcCC-CCCHhHH--HHHHHHhhccCCccc
Confidence 99999998 6777665 379999999999874
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=7e-20 Score=162.22 Aligned_cols=252 Identities=23% Similarity=0.233 Sum_probs=177.4
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|...+|.++...+. +.-.+|++++++.+++. .+|.-+..|.+|+.+...+|.+. .+|. -+....+|+.|
T Consensus 218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHHHH
Confidence 35666777777766632221 23357888888888887 46777778888888888888884 6666 55667788888
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccC-CC-CCcEEEecCccccccCCCCc-CCCCccEEEeecC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN-SS-NIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQN 165 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~-~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~ 165 (282)
.+..|.++ .+|+...+++.|++|++..|.+.. +|..+.. .. .+..|+.+.+++...+...- ..+.|+.|++.+|
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~--lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS--LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccc--cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 88888888 577777788889999998888743 5543222 22 25666666666654432222 4667888888888
Q ss_pred cceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCc-ccccccccceEEeecccceecCCccccCCccCcccc---
Q 039577 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNS-IGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN--- 241 (282)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~--- 241 (282)
.++...-..+.++.+|+.|++++|.+. .||.. +.++. .|++|+++||+++ .+|..+..++.|+.|.
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~--------~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLN--------SFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred cccccchhhhccccceeeeeecccccc--------cCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 887655556778888888888888876 55543 44566 8888888888887 7777788877777775
Q ss_pred -----------ccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577 242 -----------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 242 -----------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 278 (282)
++.|+.+|++.|+++...-...-..|+|++||++||.
T Consensus 440 N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 440 NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5678899999998873322222223899999999985
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.7e-19 Score=150.96 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=7.2
Q ss_pred CCCCCcEEEcCCCcc
Q 039577 56 QLQRLRIVDLSSGII 70 (282)
Q Consensus 56 ~l~~L~~L~l~~~~~ 70 (282)
.+++|+.|++++|.+
T Consensus 79 ~~~~L~~L~l~~~~~ 93 (319)
T cd00116 79 KGCGLQELDLSDNAL 93 (319)
T ss_pred hcCceeEEEccCCCC
Confidence 344555555554444
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.8e-19 Score=128.32 Aligned_cols=164 Identities=27% Similarity=0.455 Sum_probs=83.0
Q ss_pred CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577 32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE 111 (282)
Q Consensus 32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 111 (282)
++.+.+.|.++.|+++ .+|+.+..+.+|+.|++.+|+++ ++|. .++.++.|+.|++..|++. .+|.+|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3444445555555554 34444555555555555555554 4444 4455555555555555544 34555555555555
Q ss_pred EEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577 112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191 (282)
Q Consensus 112 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (282)
||+++|.+....+|..|..+ ..|+.|++++|.+. -+|..++++.+|+.|.+++|++
T Consensus 107 ldltynnl~e~~lpgnff~m-----------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYM-----------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhccccccccccCCcchhHH-----------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 55555555333444444444 44455555555543 4455555555555555555544
Q ss_pred ceecCCCCCCCCCcccccccccceEEeecccceecCCccccC
Q 039577 192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN 233 (282)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 233 (282)
- ++|..++.+. .|++|.+.+|+++ .+|+.++.
T Consensus 163 l--------~lpkeig~lt-~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 163 L--------SLPKEIGDLT-RLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred h--------hCcHHHHHHH-HHHHHhcccceee-ecChhhhh
Confidence 3 4444555554 5555555555554 44444443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.9e-19 Score=127.22 Aligned_cols=163 Identities=26% Similarity=0.412 Sum_probs=137.9
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
..+++.|.+++|.++ .+|+.+..+.+|+.|++.+|.+. .+|.++..+++|+.|+++.|.+. .+|. .|+.+|.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhh
Confidence 357888999999886 57888999999999999999887 68999999999999999999985 6777 89999999999
Q ss_pred EcccCeec-ccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577 89 SFSFNKIR-GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 167 (282)
++.+|.+. ..+|..|..+..|+-|++++|.+.. +|..++.+++|+.|.+..|.+...+.+...+..|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 99998876 3578888889999999999999844 88889999999999999888874443333788888999999888
Q ss_pred eeeccchhhCC
Q 039577 168 CGIVPDSICNA 178 (282)
Q Consensus 168 ~~~~~~~l~~~ 178 (282)
+ .+|..++.+
T Consensus 186 ~-vlppel~~l 195 (264)
T KOG0617|consen 186 T-VLPPELANL 195 (264)
T ss_pred e-ecChhhhhh
Confidence 7 777665443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=154.21 Aligned_cols=243 Identities=25% Similarity=0.323 Sum_probs=182.7
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
+..++.++++.|.+. .+|.-+..+.+|+.++...|.+. .+|..+....+|+.+....|.+. .+|. ....+.+|++|
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~-~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP-FLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC-cccccceeeee
Confidence 678999999999886 46777788999999999998885 56666666777777777777764 5555 44556677777
Q ss_pred EcccCeecccCCcC------------------------C--cCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCc
Q 039577 89 SFSFNKIRGWIPQK------------------------I--GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGN 142 (282)
Q Consensus 89 ~l~~~~~~~~~~~~------------------------~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 142 (282)
++..|.+.. +|.. + ..++.|+.|++.+|.++...+| .+.++.+|+.|++++|
T Consensus 316 dL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 316 DLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccc
Confidence 776665542 2221 1 1246789999999998554454 5788999999999999
Q ss_pred cccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecc
Q 039577 143 HLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC 221 (282)
Q Consensus 143 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n 221 (282)
.+...+...+ ++..|++|++++|.++ .+|..+..+..|++|...+|.+. .+| .+.+++ .|+.+|++.|
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~--------~fP-e~~~l~-qL~~lDlS~N 462 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL--------SFP-ELAQLP-QLKVLDLSCN 462 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee--------ech-hhhhcC-cceEEecccc
Confidence 9886665555 8999999999999998 89999999999999999999887 667 677788 9999999999
Q ss_pred cceec-CCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577 222 QLSGG-IPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI 277 (282)
Q Consensus 222 ~~~~~-~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 277 (282)
+++-. +|..... ++|+.||+++|.=.-..-+.|..+.++...+++-+
T Consensus 463 ~L~~~~l~~~~p~---------p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 463 NLSEVTLPEALPS---------PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhhhCCC---------cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 88732 2222211 68899999998633233467777888887777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=2.2e-18 Score=144.20 Aligned_cols=259 Identities=21% Similarity=0.199 Sum_probs=178.8
Q ss_pred EEEcCCCcccc-CCCccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCcccc------cCCCCccCCC
Q 039577 14 ALSLPNLTLGG-TIPPHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGIIPG------SLPDDTSGDC 82 (282)
Q Consensus 14 ~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~~l 82 (282)
+|+|.++.+.+ .....+..+..|+.++++++.+... ++..+...++++.++++++.+.+ .++. .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhc
Confidence 46787877763 4455566778899999999988532 45556678889999999987641 1112 45668
Q ss_pred CCccEEEcccCeecccCCcCCcCC---CCceEEEecCCCCCCCCC---CccccCC-CCCcEEEecCccccccCC----CC
Q 039577 83 IMLRRLSFSFNKIRGWIPQKIGNL---TELVELYLDGNNLQAGLL---PSVIFNS-SNIQVIILYGNHLSGHLR----SS 151 (282)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~----~~ 151 (282)
++|+.|++++|.+....+..+..+ ++|++|++++|.+..... ...+... ++|+.|++++|.++.... ..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 899999999998764344444444 449999999998732111 1234455 889999999999873222 12
Q ss_pred c-CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceec
Q 039577 152 I-YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGG 226 (282)
Q Consensus 152 ~-~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~ 226 (282)
+ .+.+|++|++++|.+++. ++..+...++|++|++++|.+++... ..++..+..++ +|++|++++|.+++.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~~~~~~-~L~~L~ls~n~l~~~ 236 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA---SALAETLASLK-SLEVLNLGDNNLTDA 236 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH---HHHHHHhcccC-CCCEEecCCCcCchH
Confidence 2 467899999999988732 33345566799999999998864322 23444555666 999999999988743
Q ss_pred CCccccC-CccCccccccccceeeccCCeeeee----cchhhhccCCCceeeccCccCCC
Q 039577 227 IPVGFGN-LSNMIKCNLESLFGLLLGGDALEGQ----IPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 227 ~~~~~~~-l~~l~~l~l~~l~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
....+.. +.. ..+.|++|++++|.+++. +...+..+++|+++++++|.++.
T Consensus 237 ~~~~l~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 237 GAAALASALLS----PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHHHHhc----cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 2222211 110 126789999999988732 34456677899999999999874
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=1e-18 Score=141.71 Aligned_cols=253 Identities=20% Similarity=0.188 Sum_probs=161.3
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCC-CcccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSS-GIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~ 87 (282)
|+..++|.|.-|+++..-+.+|+.+++|+.|||+.|.++..-|..|..++++..|.+.+ |+|+ .+|.+.|.++..++-
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 88889999999998765566888999999999999999877788888888888877776 7886 888878888888888
Q ss_pred EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCCcEEEecCccccc-cCCCCc------------C
Q 039577 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHLSG-HLRSSI------------Y 153 (282)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~------------~ 153 (282)
|.+..|.+.-.....+..++++..|.+-+|.+.. ++. .+..+..++.+++..|.+.. .-..|. .
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 8887777775445567778888888888877633 443 45566667777666554210 000000 0
Q ss_pred CCCccEEEeecCcc-------------------------eeecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCccc
Q 039577 154 LPNLENLFLWQNNL-------------------------CGIVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIG 207 (282)
Q Consensus 154 ~~~L~~L~l~~~~~-------------------------~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 207 (282)
..-.....+.+.++ ....| ..+..+++|+++++++|++++.-+ .++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-------~aFe 295 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-------GAFE 295 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-------hhhc
Confidence 00000000111111 00111 123445555555555555543221 1233
Q ss_pred ccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 208 NLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 208 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
... .+++|.+..|++...-...|.. +.+|+.|++.+|+++..-|..|..+.+|.+|++-.|.+.
T Consensus 296 ~~a-~l~eL~L~~N~l~~v~~~~f~~--------ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 296 GAA-ELQELYLTRNKLEFVSSGMFQG--------LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chh-hhhhhhcCcchHHHHHHHhhhc--------cccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 333 5555555555544211122222 478899999999999777888999999999999888763
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=3.9e-15 Score=134.79 Aligned_cols=223 Identities=23% Similarity=0.340 Sum_probs=154.3
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
..-..|+++++.++ ++|..+. ++|+.|++.+|.++ .+|. ..++|+.|++++|.++ .+|. ..++|++|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 34567899999887 6888775 58999999999987 4664 3589999999999997 6765 246899999
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCccee
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCG 169 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 169 (282)
+.+|.+. .+|.. ...|+.|++++|.++. +|. .+++|+.|++++|.+...+ .. ..+|+.|++++|.++
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N~L~~Lp-~l--p~~L~~L~Ls~N~L~- 335 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLP-AL--PSELCKLWAYNNQLT- 335 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCcccc--ccc---cccccceeECCCCccccCC-CC--cccccccccccCccc-
Confidence 9999887 45542 3678899999998854 554 2478999999999987543 22 456888999999987
Q ss_pred eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc--------
Q 039577 170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN-------- 241 (282)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~-------- 241 (282)
.+|.. ..+|++|++++|.++. +|. .+.+|+.|++++|.+. .+|.... +|+.|+
T Consensus 336 ~LP~l---p~~Lq~LdLS~N~Ls~--------LP~----lp~~L~~L~Ls~N~L~-~LP~l~~---~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 336 SLPTL---PSGLQELSVSDNQLAS--------LPT----LPSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTS 396 (788)
T ss_pred ccccc---ccccceEecCCCccCC--------CCC----CCcccceehhhccccc-cCccccc---ccceEEecCCcccC
Confidence 66642 3589999999999873 221 1124555555555554 3333211 111111
Q ss_pred ----ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 242 ----LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 242 ----l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
.++|+.|++++|.++ .+|..+ .+|+.|++++|.|+
T Consensus 397 LP~l~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt 435 (788)
T PRK15387 397 LPVLPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT 435 (788)
T ss_pred CCCcccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc
Confidence 145667777777776 355432 35667777777765
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=3.5e-16 Score=127.10 Aligned_cols=181 Identities=22% Similarity=0.275 Sum_probs=115.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecC-CcceeeCC-------------------------ccccCCCCCcE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVA-KSFYGTLP-------------------------NELWQLQRLRI 62 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-------------------------~~l~~l~~L~~ 62 (282)
-+++|+|||+.|+++...|.+|.+++.|..|-+++ |+++. +| ..+..+++|..
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 57899999999999988899999999988887776 77653 22 33445677777
Q ss_pred EEcCCCcccccCCCCccCCCCCccEEEcccCeecc---------------------------------------------
Q 039577 63 VDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRG--------------------------------------------- 97 (282)
Q Consensus 63 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------------------------------- 97 (282)
|.+.+|.+. .++...+..+..++++++..|.+..
T Consensus 169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 788887775 5665566666677766655443110
Q ss_pred ----------------cCCc-CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccE
Q 039577 98 ----------------WIPQ-KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLEN 159 (282)
Q Consensus 98 ----------------~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~ 159 (282)
..|. -|+.+++|++|++++|.+ ...-+.+|.....++.|.+..|.+..+....+ .+..|+.
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i-~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI-TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc-chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 0000 133456666666666666 32333455556666666666666654443334 5666777
Q ss_pred EEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577 160 LFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192 (282)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (282)
|++++|+++-..|..+..+.+|.+|.+-.|.+.
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCccc
Confidence 777777776444555555666666666655543
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=4.1e-14 Score=113.48 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCccccC----CCccccCCCCccEEEecCCc---ceeeCC-------ccccCCCCCcEEEcCCCcccccC
Q 039577 9 HRRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKS---FYGTLP-------NELWQLQRLRIVDLSSGIIPGSL 74 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~ 74 (282)
..+++.|+++||.+... +...+.+.+.|+..++++-. ....+| +.+..+++|+.+++++|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 35667777777776432 33345556667776666421 111222 22334566777777776653222
Q ss_pred CC---CccCCCCCccEEEcccCeec
Q 039577 75 PD---DTSGDCIMLRRLSFSFNKIR 96 (282)
Q Consensus 75 ~~---~~~~~l~~L~~L~l~~~~~~ 96 (282)
+. ..+..+..|++|.+.+|.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC
Confidence 21 12344566666666666544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.9e-11 Score=110.49 Aligned_cols=118 Identities=28% Similarity=0.447 Sum_probs=97.8
Q ss_pred CCeeecCC----CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCC
Q 039577 1 VGVTCGVP----HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD 76 (282)
Q Consensus 1 ~~~~~~~~----~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 76 (282)
.||.|... ...++.|+|.++.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 405 ~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 405 SGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred ccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 37888532 12588999999999999999999999999999999999888998889999999999999999888887
Q ss_pred CccCCCCCccEEEcccCeecccCCcCCcCC-CCceEEEecCCCC
Q 039577 77 DTSGDCIMLRRLSFSFNKIRGWIPQKIGNL-TELVELYLDGNNL 119 (282)
Q Consensus 77 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 119 (282)
.++.+++|++|++++|.+.+.+|..+... .++..+++.+|..
T Consensus 485 -~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 485 -SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred -HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 78889999999999999888888776653 4566777777653
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=7.9e-12 Score=98.95 Aligned_cols=222 Identities=19% Similarity=0.209 Sum_probs=139.4
Q ss_pred CCCccEEEecCCcc-------ee-eCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCc
Q 039577 33 LSFLVSLTSVAKSF-------YG-TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG 104 (282)
Q Consensus 33 l~~L~~L~l~~~~~-------~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 104 (282)
+.+|.+|..+...- .. -+|=.+.-+++|+.+.++.+.-. .+.. ....-|.|+++.+++..+.. . +.+-
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~-~~~~kptl~t~~v~~s~~~~-~-~~l~ 256 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVD-IELLKPTLQTICVHNTTIQD-V-PSLL 256 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heec-eeecCchhheeeeecccccc-c-cccc
Confidence 56777777664221 11 12222334578888888877643 3332 22344678888777655442 1 2222
Q ss_pred CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcE
Q 039577 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI 183 (282)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 183 (282)
....+............+..-..+..+..|+.++++.|.++. +.++. -.++++.|+++.|.+. .+.. +..+++|..
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceE
Confidence 233333222222222122222234445778999999998873 34445 5789999999999887 4333 778899999
Q ss_pred EeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecc--h
Q 039577 184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP--T 261 (282)
Q Consensus 184 L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~--~ 261 (282)
|++++|.++ .+-.|-.++. ++++|.+++|.+. .+..+.+| .+|+.||+++|++. ++. .
T Consensus 334 LDLS~N~Ls--------~~~Gwh~KLG-NIKtL~La~N~iE-----~LSGL~KL-----YSLvnLDl~~N~Ie-~ldeV~ 393 (490)
T KOG1259|consen 334 LDLSGNLLA--------ECVGWHLKLG-NIKTLKLAQNKIE-----TLSGLRKL-----YSLVNLDLSSNQIE-ELDEVN 393 (490)
T ss_pred eecccchhH--------hhhhhHhhhc-CEeeeehhhhhHh-----hhhhhHhh-----hhheeccccccchh-hHHHhc
Confidence 999999887 4444555666 8899999988775 12233322 67888999999887 322 4
Q ss_pred hhhccCCCceeeccCccCCC
Q 039577 262 CLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 262 ~~~~l~~L~~l~l~~n~~~~ 281 (282)
.++++|.|+.+.+.+|.+++
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccccccHHHHHhhcCCCccc
Confidence 68889999999999998876
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=5.3e-13 Score=113.57 Aligned_cols=177 Identities=27% Similarity=0.375 Sum_probs=112.9
Q ss_pred cEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEec
Q 039577 61 RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140 (282)
Q Consensus 61 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 140 (282)
...|++.|.+. .+|. .++.+..|+.+.+..|.+. .+|..+..+..|.+++++.|.+.. +|..+..++ |+.|.++
T Consensus 78 ~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEe
Confidence 44666677664 6665 4556666777777666655 466667777777777777777633 555544433 6777777
Q ss_pred CccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeec
Q 039577 141 GNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS 220 (282)
Q Consensus 141 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~ 220 (282)
+|+++..+.+......|..|+.+.|.+. .+|.-++++.+|+.|.+..|.+. .+|..+..+| |.+||+++
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~--------~lp~El~~Lp--Li~lDfSc 220 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE--------DLPEELCSLP--LIRLDFSC 220 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh--------hCCHHHhCCc--eeeeeccc
Confidence 7777644333335666777777777776 66666777777777777777665 4454555555 77777777
Q ss_pred ccceecCCccccCCccCccccccccceeeccCCeeeeecchhhh
Q 039577 221 CQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264 (282)
Q Consensus 221 n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~ 264 (282)
|++. .+|-.|.++ .+|++|-|.+|.++ .-|..++
T Consensus 221 Nkis-~iPv~fr~m--------~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKM--------RHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred Ccee-ecchhhhhh--------hhheeeeeccCCCC-CChHHHH
Confidence 7776 667666665 45566666667766 3344444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.3e-12 Score=106.40 Aligned_cols=159 Identities=20% Similarity=0.163 Sum_probs=61.7
Q ss_pred CCCccEEEecCCcceeeCC-ccccCCCCCcEEEcCCCcccccCC-CCccCCCCCccEEEcccCeecccCCc-CCcCCCCc
Q 039577 33 LSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGIIPGSLP-DDTSGDCIMLRRLSFSFNKIRGWIPQ-KIGNLTEL 109 (282)
Q Consensus 33 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L 109 (282)
+.+|+.+.|.++....... +....|++++.||+++|-+..-.+ ...+..+|+|+.|+++.|++...... .-..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4445555554444432110 123345555555555544321000 00223455555555555544311111 01123445
Q ss_pred eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeecc--chhhCCCCCcEEec
Q 039577 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVP--DSICNASEVTILEL 186 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l 186 (282)
+.|.++.|.+.+..+-..+..+++|+.|.+.+|.......... -++.|++|++++|++. .++ ..++.++.|..|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhc
Confidence 5555555544322222222334455555554442110100111 2344555555554443 222 22334445555555
Q ss_pred cCcccc
Q 039577 187 SKNLFS 192 (282)
Q Consensus 187 ~~~~~~ 192 (282)
+.+.+.
T Consensus 279 s~tgi~ 284 (505)
T KOG3207|consen 279 SSTGIA 284 (505)
T ss_pred cccCcc
Confidence 554444
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=6.7e-13 Score=106.62 Aligned_cols=245 Identities=22% Similarity=0.315 Sum_probs=170.6
Q ss_pred ccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCccccc----CCCC------ccCCCCCccEEEcccC
Q 039577 28 PHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGIIPGS----LPDD------TSGDCIMLRRLSFSFN 93 (282)
Q Consensus 28 ~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~------~~~~l~~L~~L~l~~~ 93 (282)
+.+..+..++.+++++|.+... +.+.+.+.++|+..+++.-.. |. +|.. .+..+++|+++++++|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFT-GRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhc-CCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3455678899999999998643 334455678999999987432 22 2221 3456789999999999
Q ss_pred eecccCCcC----CcCCCCceEEEecCCCCCCCC------------CCccccCCCCCcEEEecCccccccCCCCc-----
Q 039577 94 KIRGWIPQK----IGNLTELVELYLDGNNLQAGL------------LPSVIFNSSNIQVIILYGNHLSGHLRSSI----- 152 (282)
Q Consensus 94 ~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----- 152 (282)
.+....+.. +.....|++|++.+|.+.... ....+...++|+.+....|.+.......+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 988554443 345688999999999872210 11123445789999999988764433222
Q ss_pred CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577 153 YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228 (282)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 228 (282)
..+.|+.+.++.|.+... +...+.++++|+.|++++|.++.. ++..+...+..++ +|++|++++|.+.....
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---gs~~LakaL~s~~-~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---GSVALAKALSSWP-HLRELNLGDCLLENEGA 258 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH---HHHHHHHHhcccc-hheeecccccccccccH
Confidence 467899999999987521 234567899999999999988743 2234555677788 99999999998874444
Q ss_pred ccccCCccCccccccccceeeccCCeeeee----cchhhhccCCCceeeccCccCC
Q 039577 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQ----IPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 229 ~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
..+.. .++.. .++|+.|.+.+|.++-. +..+....|.|.+|++++|++.
T Consensus 259 ~a~~~--al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 259 IAFVD--ALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHH--HHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 33321 11111 47899999999998743 2234556799999999999984
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=4.6e-11 Score=103.03 Aligned_cols=177 Identities=33% Similarity=0.399 Sum_probs=101.9
Q ss_pred cCCCCccEEEecCCcceeeCCccccCCC-CCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577 31 GNLSFLVSLTSVAKSFYGTLPNELWQLQ-RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL 109 (282)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (282)
..++.++.+++.++.+. .+++...... +|+.|++++|.+. .++. .+..+++|+.|++..|.+. .++......+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 34456666666666665 3444444453 6777777777664 4432 3456667777777777666 345544456667
Q ss_pred eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (282)
+.|++++|.+.. +|..+.....|+++.+++|.....+.....+.++..+.+.+|++. .++..++.++++++|++++|
T Consensus 189 ~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCcccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 777777766633 554444455566666666643322222124555555666666654 44555566666777777777
Q ss_pred ccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
.++. ++. +.... +++.++++++.+.
T Consensus 266 ~i~~--------i~~-~~~~~-~l~~L~~s~n~~~ 290 (394)
T COG4886 266 QISS--------ISS-LGSLT-NLRELDLSGNSLS 290 (394)
T ss_pred cccc--------ccc-ccccC-ccCEEeccCcccc
Confidence 6652 222 33344 6777777766555
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=8e-11 Score=101.50 Aligned_cols=176 Identities=33% Similarity=0.382 Sum_probs=89.4
Q ss_pred CCCCccEEEcccCeecccCCcCCcCCC-CceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccE
Q 039577 81 DCIMLRRLSFSFNKIRGWIPQKIGNLT-ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLEN 159 (282)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 159 (282)
.++.++.+.+..+.+. .++....... +|+.|++++|.+.. ++..+..+++|+.|.++.|.+....+.....+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3345556666555555 3444444443 56666666665532 333455566666666666665533322214555666
Q ss_pred EEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcc
Q 039577 160 LFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIK 239 (282)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~ 239 (282)
+++++|.++ .+|........|+++.+++|.+. ..+..+.... ++..+.+.+|.+. ..+..++.+
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~-~l~~l~l~~n~~~-~~~~~~~~l----- 254 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII--------ELLSSLSNLK-NLSGLELSNNKLE-DLPESIGNL----- 254 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce--------ecchhhhhcc-cccccccCCceee-eccchhccc-----
Confidence 666666665 55554434445666666666322 2222333333 4555555555444 223333332
Q ss_pred ccccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 240 CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 240 l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
++++.|++++|.++ .++. +..+.+++.+++++|.++
T Consensus 255 ---~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 255 ---SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ---cccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence 34555666666665 3333 555666666666665554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.1e-12 Score=109.95 Aligned_cols=168 Identities=23% Similarity=0.339 Sum_probs=77.2
Q ss_pred EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167 (282)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 167 (282)
.+++.|++. .+|..+..+..|+.+.+..|.+.. +|..+.++..|.+++++.|.+.-.+ ..+..--|+.|-+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLSHLP-DGLCDLPLKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhhcCC-hhhhcCcceeEEEecCcc
Confidence 344444444 344444444444444444444422 4444444555555555555444222 222122244445555554
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
+ .+|..++....|..|+.+.|.+. .+|..++.+. +|+.+.+..|++. .+|..+..+ .|.+
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~--------slpsql~~l~-slr~l~vrRn~l~-~lp~El~~L---------pLi~ 215 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ--------SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCSL---------PLIR 215 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh--------hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhCC---------ceee
Confidence 4 44544444445555555555443 3333444443 4555555555444 334333322 2445
Q ss_pred eeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
||+++|.++ .+|.+|.+|.+|++|.|.+|.+.
T Consensus 216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 555555554 44555555555555555555443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=8.6e-12 Score=103.13 Aligned_cols=215 Identities=22% Similarity=0.197 Sum_probs=112.0
Q ss_pred cCCCCCcEEEcCCCcccccCCC-CccCCCCCccEEEcccCeeccc--CCcCCcCCCCceEEEecCCCCCCCCCCccccCC
Q 039577 55 WQLQRLRIVDLSSGIIPGSLPD-DTSGDCIMLRRLSFSFNKIRGW--IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS 131 (282)
Q Consensus 55 ~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 131 (282)
.++.+|+...+.++... ..+. .-...+++++.|+++.|-+... +......+++|+.|+++.|++....-...-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35667777777776653 2221 2345677777777776654421 122334567777777777766221111112245
Q ss_pred CCCcEEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccc
Q 039577 132 SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNL 209 (282)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~ 209 (282)
+.++.|.+++|++++....++ .+++|+.|++..|...........-+..|++|++++|.+-+.. .+ .-.+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~-~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QG-YKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----cc-cccccc
Confidence 667777777777764433333 5677777777776322111222233456777777777665321 11 123344
Q ss_pred ccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecch--hhhccCCCceeeccCccCC
Q 039577 210 STSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT--CLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 210 ~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~~~ 280 (282)
| .|+.|+++.+++....-.......... .+++|+.|++..|.+. +.++ .+..+++|+.+.+..|.++
T Consensus 271 ~-~L~~Lnls~tgi~si~~~d~~s~~kt~--~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 P-GLNQLNLSSTGIASIAEPDVESLDKTH--TFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred c-chhhhhccccCcchhcCCCccchhhhc--ccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 4 666676766666532211121111111 1366677777777664 2221 2334566666666666554
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=9.7e-11 Score=108.63 Aligned_cols=105 Identities=26% Similarity=0.249 Sum_probs=49.8
Q ss_pred ceEEEEcCCCc--cccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 11 RVTALSLPNLT--LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 11 ~l~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++|-+.+|. +.......|..++.|++||+++|.-.+.+|.+++.+.+||+|++++..+. .+|. .++++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhhee
Confidence 45555555543 22111222444555555555555444455555555555555555555553 4554 44555555555
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGN 117 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 117 (282)
++..+......+.....+.+|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 55544332222333333555555555443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3e-10 Score=85.30 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCCCcEEEcCCCcccccCCCCccC-CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccc-cCCCCC
Q 039577 57 LQRLRIVDLSSGIIPGSLPDDTSG-DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI-FNSSNI 134 (282)
Q Consensus 57 l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L 134 (282)
+.+++.|++.+|.++ .+.. +. .+.+|+.|++++|.+.. + ..+..+++|+.|++++|.++. +...+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNL 90 (175)
T ss_dssp -------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S---CHHHHHH-TT-
T ss_pred ccccccccccccccc-cccc--hhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc--cccchHHhCCcC
Confidence 334444444444443 2221 21 34444555555544441 2 233444555555555555422 22222 234455
Q ss_pred cEEEecCccccccCC-CCc-CCCCccEEEeecCcceeecc----chhhCCCCCcEEec
Q 039577 135 QVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVP----DSICNASEVTILEL 186 (282)
Q Consensus 135 ~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l 186 (282)
+.|.+++|.+..... ..+ .+++|+.|++.+|+++ ..+ ..+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 555555554432211 111 4566666666666655 222 23456677777754
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=6e-10 Score=83.69 Aligned_cols=127 Identities=27% Similarity=0.295 Sum_probs=42.8
Q ss_pred ccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCC-cCCC
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLT 107 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~ 107 (282)
+.+..+++.|+|.+|.+.. + +.+. .+.+|+.|++++|.+. .++ .+..+++|++|++++|+++. +...+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 3445567888888877763 3 2344 4677888888888875 454 35667788888888888773 44333 3577
Q ss_pred CceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCC---c-CCCCccEEEe
Q 039577 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSS---I-YLPNLENLFL 162 (282)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~-~~~~L~~L~l 162 (282)
+|++|++++|.+..-.--..+..+++|+.|++.+|.++.....- + .+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888887743222234566778888888888776443211 1 5677777764
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=4e-09 Score=95.64 Aligned_cols=106 Identities=29% Similarity=0.490 Sum_probs=63.1
Q ss_pred ccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEec
Q 039577 36 LVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLD 115 (282)
Q Consensus 36 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 115 (282)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55666666666666666666666666666666666655555 45666666666666666665566666666666666666
Q ss_pred CCCCCCCCCCccccCC-CCCcEEEecCcc
Q 039577 116 GNNLQAGLLPSVIFNS-SNIQVIILYGNH 143 (282)
Q Consensus 116 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 143 (282)
+|.+ .+.+|..+... .++..+++.+|.
T Consensus 499 ~N~l-~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSL-SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcc-cccCChHHhhccccCceEEecCCc
Confidence 6665 44455444332 234455555443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=2e-09 Score=100.12 Aligned_cols=255 Identities=23% Similarity=0.252 Sum_probs=134.8
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCc--ceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS--FYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
..+++..+-++.+.. ++.+ ..+++|++|-+..|. +.......|..++.|+.||+++|.-.+.+|. .++.+.+|++
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhc
Confidence 455666666665532 2221 234577777777765 3322223355688888888887655457777 7777888888
Q ss_pred EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC--CCCc-CCCCccEEEeec
Q 039577 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL--RSSI-YLPNLENLFLWQ 164 (282)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~L~~L~l~~ 164 (282)
|+++++.+. .+|..+.++..|.+|++..+.. ....+.....+.+|++|.+......... ...+ .+..|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~-l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGR-LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccc-cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888887777 5788888888888888876654 2223445555777887777654421111 0111 233333333322
Q ss_pred CcceeeccchhhCCCCCc----EEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcccc--------
Q 039577 165 NNLCGIVPDSICNASEVT----ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG-------- 232 (282)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-------- 232 (282)
... .+..-+.....|. .+.+.++.. ...+..+..+. +|+.|.+.++.+......+..
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~--------~~~~~~~~~l~-~L~~L~i~~~~~~e~~~~~~~~~~~~~~f 746 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK--------RTLISSLGSLG-NLEELSILDCGISEIVIEWEESLIVLLCF 746 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhccccc--------ceeeccccccc-CcceEEEEcCCCchhhcccccccchhhhH
Confidence 211 0000011111111 111111111 12334555666 888888888876522221211
Q ss_pred ---------CCccCcccc----ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 233 ---------NLSNMIKCN----LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 233 ---------~l~~l~~l~----l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
++..++.+. .++|+.|.+..+.....+......+..+...-+..+.+.
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 111111111 577888888877666555555555555555444444443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=5.6e-09 Score=64.63 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=49.6
Q ss_pred ccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccC
Q 039577 212 SLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279 (282)
Q Consensus 212 ~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~ 279 (282)
+|++|++++|.++...+..+..+ ++|++|++++|.++...+..|..+++|+++++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l--------~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNL--------PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTG--------TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCC--------CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 78999999998884444566664 6788999999999866677899999999999999986
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=1.3e-08 Score=63.04 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=29.4
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI 69 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 69 (282)
++++|++++|.+...-+..|..+++|++|++++|.+...-+..+..+++|+.+++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555543333344555555555555555543334444455555555555543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=8.6e-10 Score=87.59 Aligned_cols=130 Identities=22% Similarity=0.145 Sum_probs=75.3
Q ss_pred cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577 31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110 (282)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (282)
...+-|+++|+++|.++ .+.+++.-.+.++.|++++|.+. .+. .+..+++|+.|++++|.+. .+...=.++.+++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34456666777776665 34455555667777777777664 332 3556667777777766655 2222223456666
Q ss_pred EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCC-CCc-CCCCccEEEeecCcce
Q 039577 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~ 168 (282)
+|.+..|.+.. + .++..+.+|..|++.+|.+..... ..+ .++.|+.+.+.+|.+.
T Consensus 356 tL~La~N~iE~--L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKIET--L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhHhh--h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 77776665521 2 345566666677777666642211 222 5666777777776665
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.66 E-value=8.5e-10 Score=86.34 Aligned_cols=243 Identities=18% Similarity=0.170 Sum_probs=114.9
Q ss_pred CceEEEEcCCCccccC----CCccccCCCCccEEEecCCcce---ee-------CCccccCCCCCcEEEcCCCcccccCC
Q 039577 10 RRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKSFY---GT-------LPNELWQLQRLRIVDLSSGIIPGSLP 75 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~ 75 (282)
..++.++++||.+... +...+.+-.+|+..++++-... .. +-+.+..|+.|+..+++.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4667777777777543 3334455566777766642211 11 11334466777777777766643333
Q ss_pred C---CccCCCCCccEEEcccCeecccCCcCC-------------cCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEe
Q 039577 76 D---DTSGDCIMLRRLSFSFNKIRGWIPQKI-------------GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL 139 (282)
Q Consensus 76 ~---~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 139 (282)
. +.++....|++|.+++|.+...-...+ ..-|.|+......|++.. -+...+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen--gs~~~~a--------- 178 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN--GSKELSA--------- 178 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc--CcHHHHH---------
Confidence 2 133445566666666665441100111 122445555555555422 1111000
Q ss_pred cCccccccCCCCc-CCCCccEEEeecCcceeecc-----chhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577 140 YGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVP-----DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL 213 (282)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L 213 (282)
..+ .-..|+.+.+..|.+..... ..+.++.+|+.|++++|.++.... ..+...+..|+ .|
T Consensus 179 ----------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS---~~La~al~~W~-~l 244 (388)
T COG5238 179 ----------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS---RYLADALCEWN-LL 244 (388)
T ss_pred ----------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH---HHHHHHhcccc-hh
Confidence 000 11245555555555441100 112344566666666666552211 12223344455 56
Q ss_pred ceEEeecccceecCCccc-cCCccCccccccccceeeccCCeeeeecchh--h-----hccCCCceeeccCccCC
Q 039577 214 ENFYASSCQLSGGIPVGF-GNLSNMIKCNLESLFGLLLGGDALEGQIPTC--L-----ANLTSLISLNLRSIRLN 280 (282)
Q Consensus 214 ~~L~l~~n~~~~~~~~~~-~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~--~-----~~l~~L~~l~l~~n~~~ 280 (282)
++|.+..|.++......+ ..+.. +..++|..|...+|...+.+... + ..+|-|..+.+.||+|.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e---~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNE---KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhccccchhhccccHHHHHHHhhh---hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 667666665553322211 12211 22366666666666555443221 1 13567777777777765
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-08 Score=88.25 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=49.8
Q ss_pred ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL 109 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (282)
+..++.|+.+++.+|.+.. +...+..+++|++|++++|.+. .+.. +..++.|+.|++.+|.+.. ...+..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh--ccCCccchhh
Confidence 3444555555555555542 2111344555555555555553 3321 3344445555555555542 2233345555
Q ss_pred eEEEecCCCCCCCCCCcc-ccCCCCCcEEEecCcccc
Q 039577 110 VELYLDGNNLQAGLLPSV-IFNSSNIQVIILYGNHLS 145 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 145 (282)
+.+++++|.++. +... ...+.+++.+.+.+|.+.
T Consensus 165 ~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVD--IENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhh--hhhhhhhhccchHHHhccCCchh
Confidence 555555555422 2111 233444555555555443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.5e-10 Score=88.50 Aligned_cols=179 Identities=19% Similarity=0.126 Sum_probs=114.0
Q ss_pred CccEEEecCCcceee-CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-eccc-CCcCCcCCCCceE
Q 039577 35 FLVSLTSVAKSFYGT-LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGW-IPQKIGNLTELVE 111 (282)
Q Consensus 35 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~ 111 (282)
+|+.+||+...++.. +..-+..|.+|+.+.+.++.+.+.+.. .+.+-.+|+.+++++|. ++.. +...+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 588888887777532 233456788888888888888655555 56677888888888764 2211 1123456788888
Q ss_pred EEecCCCCCCCCCCccccC-CCCCcEEEecCccccccCC--CCc--CCCCccEEEeecCcce-eeccchhhCCCCCcEEe
Q 039577 112 LYLDGNNLQAGLLPSVIFN-SSNIQVIILYGNHLSGHLR--SSI--YLPNLENLFLWQNNLC-GIVPDSICNASEVTILE 185 (282)
Q Consensus 112 L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~--~~~--~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~ 185 (282)
|+++++.+....+...+.+ -++|+.|+++|+.-..... ..+ ++++|..|+++++... ......+.+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9998887744332222223 2578888888765321111 111 6888999999887543 33344566788889998
Q ss_pred ccCcccceecCCCCCCCCCcccccccccceEEeecc
Q 039577 186 LSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC 221 (282)
Q Consensus 186 l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n 221 (282)
++.|..- +|+ .--.+...| .|..|++-++
T Consensus 345 lsRCY~i--~p~----~~~~l~s~p-sl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPE----TLLELNSKP-SLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChH----HeeeeccCc-ceEEEEeccc
Confidence 8888332 222 111355666 8888888764
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=6.1e-08 Score=84.07 Aligned_cols=217 Identities=26% Similarity=0.279 Sum_probs=111.5
Q ss_pred CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEE
Q 039577 33 LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112 (282)
Q Consensus 33 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (282)
+..++.+.+..|.+.. +-..+..+++|+.+++.+|.+. .+.. .+..+++|++|++++|.+.. -..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hccc-chhhhhcchheecccccccc--ccchhhccchhhh
Confidence 3444555555555542 2223556677777777777765 3332 24566777777777777663 2234555667777
Q ss_pred EecCCCCCCCCCCccccCCCCCcEEEecCccccccCC-CCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLR-SSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191 (282)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (282)
++.+|.+.. + ..+..+..|+.+++++|.+..... ..-.+.+++.+++.+|.+. .+ ..+.....+..+++..|.+
T Consensus 146 ~l~~N~i~~--~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i-~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EI-EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cc-cchHHHHHHHHhhcccccc
Confidence 777776632 2 234446666777777776654444 1113566666666666654 21 1122233344445566655
Q ss_pred ceecCCCCCCCCCcccccc-cccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCc
Q 039577 192 SCLIPNTSGVFPNSIGNLS-TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLI 270 (282)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~ 270 (282)
+..- .++ ... .+|+++++.+|.+. .++..+..+ ..+..|++.+|.+... ..+...+.+.
T Consensus 221 ~~~~-----~l~----~~~~~~L~~l~l~~n~i~-~~~~~~~~~--------~~l~~l~~~~n~~~~~--~~~~~~~~~~ 280 (414)
T KOG0531|consen 221 SKLE-----GLN----ELVMLHLRELYLSGNRIS-RSPEGLENL--------KNLPVLDLSSNRISNL--EGLERLPKLS 280 (414)
T ss_pred eecc-----Ccc----cchhHHHHHHhcccCccc-ccccccccc--------ccccccchhhcccccc--ccccccchHH
Confidence 4221 010 111 02677777777766 332223332 3455566666655421 2334444444
Q ss_pred eeeccCccC
Q 039577 271 SLNLRSIRL 279 (282)
Q Consensus 271 ~l~l~~n~~ 279 (282)
++....|.+
T Consensus 281 ~~~~~~~~~ 289 (414)
T KOG0531|consen 281 ELWLNDNKL 289 (414)
T ss_pred HhccCcchh
Confidence 444444443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.8e-09 Score=84.56 Aligned_cols=181 Identities=20% Similarity=0.157 Sum_probs=117.9
Q ss_pred CCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCCCCCccccCCCCCcE
Q 039577 58 QRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAGLLPSVIFNSSNIQV 136 (282)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~ 136 (282)
..|+.+|++...++..---..+..+.+|+.|.+.++++.+.+...+.+..+|+.|+++.+. ++.....-.+.++..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588999999887633222255678889999999999887666777888999999998865 322223334567888999
Q ss_pred EEecCccccccCCCCc---CCCCccEEEeecCcce---eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccc
Q 039577 137 IILYGNHLSGHLRSSI---YLPNLENLFLWQNNLC---GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLS 210 (282)
Q Consensus 137 L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~ 210 (282)
|++++|.........+ --.+|..|+++++.-. .++.--...++++.+||+++|..-.. .....+.+.+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~------~~~~~~~kf~ 338 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN------DCFQEFFKFN 338 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc------hHHHHHHhcc
Confidence 9999998753332222 2567888888886432 12222335688999999998844311 1122455677
Q ss_pred cccceEEeecccceecCCccccCCccCccccccccceeeccC
Q 039577 211 TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGG 252 (282)
Q Consensus 211 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~ 252 (282)
.|+.|.++.|.. .+|..+-.+.. .|.+..||+-+
T Consensus 339 -~L~~lSlsRCY~--i~p~~~~~l~s-----~psl~yLdv~g 372 (419)
T KOG2120|consen 339 -YLQHLSLSRCYD--IIPETLLELNS-----KPSLVYLDVFG 372 (419)
T ss_pred -hheeeehhhhcC--CChHHeeeecc-----CcceEEEEecc
Confidence 899999999853 34554433322 25555555544
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.2e-07 Score=75.52 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=43.9
Q ss_pred CceEEEEcCCCcccc--CCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 10 RRVTALSLPNLTLGG--TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
.+++++|+.+|.++. .+...+..+|+|++|+++.|.+...+........+|+.+.+.+..+...-....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 355666666666553 233344566666666666666543332111345566666666655432222224455666666
Q ss_pred EEcccC
Q 039577 88 LSFSFN 93 (282)
Q Consensus 88 L~l~~~ 93 (282)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 666655
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=1.1e-06 Score=50.05 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=24.6
Q ss_pred ccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 244 SLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 244 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+|++|++++|.++ .+|..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5677777777777 455567777777777777777653
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=2.2e-07 Score=82.27 Aligned_cols=156 Identities=23% Similarity=0.244 Sum_probs=86.1
Q ss_pred CcCCcCCCCceEEEecCCCCCCCCCCccccCCC-CCcEEEecCc------ccc---ccCCCCcCCCCccEEEeecCccee
Q 039577 100 PQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS-NIQVIILYGN------HLS---GHLRSSIYLPNLENLFLWQNNLCG 169 (282)
Q Consensus 100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~------~~~---~~~~~~~~~~~L~~L~l~~~~~~~ 169 (282)
|-.+..+..|+.|.+.++.+.. ..++..+. +|++|..... -+. ........+..|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~---~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST---AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh---hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5566778889999998887622 12222221 2222221100 000 11112224566777777777776
Q ss_pred eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc-cccCCccCcccccccccee
Q 039577 170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l~~L 248 (282)
.+-..+.-++.++.|++++|++.... .+..++ +|+.||++.|.+. .+|. .... .+|+.|
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~---------~Lr~l~-~LkhLDlsyN~L~-~vp~l~~~g---------c~L~~L 237 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD---------NLRRLP-KLKHLDLSYNCLR-HVPQLSMVG---------CKLQLL 237 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH---------HHHhcc-cccccccccchhc-cccccchhh---------hhheee
Confidence 55555666777888888888776331 244455 7888888888776 4443 1111 245566
Q ss_pred eccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+++|.++. + .++.++.+|..||+++|-|++
T Consensus 238 ~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 238 NLRNNALTT-L-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eecccHHHh-h-hhHHhhhhhhccchhHhhhhc
Confidence 666666552 1 445566666666666665543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=7.7e-08 Score=85.11 Aligned_cols=126 Identities=23% Similarity=0.236 Sum_probs=76.1
Q ss_pred CCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEE
Q 039577 59 RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVII 138 (282)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 138 (282)
.|...++++|.+. .+.. .+.-++.+++|++++|++.. +. .+..++.|++||+++|.++. +|..-..-.+|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhcc--ccccchhhhhheeee
Confidence 4455555566553 3333 45567778888888887773 33 56777888888888887744 554222234577777
Q ss_pred ecCccccccCCCCc-CCCCccEEEeecCcceeec-cchhhCCCCCcEEeccCcccc
Q 039577 139 LYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIV-PDSICNASEVTILELSKNLFS 192 (282)
Q Consensus 139 l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 192 (282)
+.+|.++... .+ .+.+|+.|++++|-+.+.- -..+..+..|+.|.+.+|.+-
T Consensus 239 lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777765321 22 5777777778777665211 111334556677777777653
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=5.6e-05 Score=64.21 Aligned_cols=136 Identities=20% Similarity=0.176 Sum_probs=80.7
Q ss_pred CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEE
Q 039577 81 DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENL 160 (282)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 160 (282)
.+.+++.|+++.|.+. .+|. -..+|+.|.++++.- ...+|..+ +.+|+.|.+.+|...... ...|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCccccccc-----ccccceE
Confidence 4678999999999877 4562 234699999987543 22355433 368999999987322222 3567778
Q ss_pred EeecCcce--eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCc
Q 039577 161 FLWQNNLC--GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI 238 (282)
Q Consensus 161 ~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 238 (282)
++..+... +.+| ++|+.|.+.++.... + ..+|. .+|.+|+.|++.+|... ..|..+.
T Consensus 118 ~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~--~---~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP------ 176 (426)
T PRK15386 118 EIKGSATDSIKNVP------NGLTSLSINSYNPEN--Q---ARIDN---LISPSLKTLSLTGCSNI-ILPEKLP------ 176 (426)
T ss_pred EeCCCCCcccccCc------chHhheecccccccc--c---ccccc---ccCCcccEEEecCCCcc-cCccccc------
Confidence 77655432 1333 356777765432110 0 01111 24458999999998765 3444332
Q ss_pred cccccccceeeccCC
Q 039577 239 KCNLESLFGLLLGGD 253 (282)
Q Consensus 239 ~l~l~~l~~L~l~~n 253 (282)
.+|+.|.++.+
T Consensus 177 ----~SLk~L~ls~n 187 (426)
T PRK15386 177 ----ESLQSITLHIE 187 (426)
T ss_pred ----ccCcEEEeccc
Confidence 35666776654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.9e-06 Score=68.87 Aligned_cols=135 Identities=15% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCCCCcEEEcCCCcccc--cCCCCccCCCCCccEEEcccCeecccCCcCC-cCCCCceEEEecCCCCCCCCCCccccCCC
Q 039577 56 QLQRLRIVDLSSGIIPG--SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNSS 132 (282)
Q Consensus 56 ~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 132 (282)
.++.++.+|+.+|.+.+ ++-. .+..+|.|++|+++.|++...+ ..+ ....+|+.|.+.+..+.+......+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 46778888888887642 1222 4567888888888888776422 222 24567888888777664433334455667
Q ss_pred CCcEEEecCccccccCCC--Cc--CCCCccEEEeecCccee--eccchhhCCCCCcEEeccCcccc
Q 039577 133 NIQVIILYGNHLSGHLRS--SI--YLPNLENLFLWQNNLCG--IVPDSICNASEVTILELSKNLFS 192 (282)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~--~~--~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 192 (282)
.++.|+++.|.+.....+ .. .-+.+++++...|.... +.-.....++++..+-+..|.+.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 777777777744311110 01 12345555555443321 00011123456666656666554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.3e-05 Score=45.63 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=17.9
Q ss_pred CccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc
Q 039577 35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP 71 (282)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 71 (282)
+|++|++++|.+. .+|+.+.+|++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555554 34444555555555555555543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=7.5e-05 Score=56.53 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCcccc-CCCCCcEEEecCccccccCC-CCc-CCCCccE
Q 039577 83 IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGNHLSGHLR-SSI-YLPNLEN 159 (282)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~ 159 (282)
.+...+++++|.+.. ...|..+++|..|.+++|+++. +...+. -+++|+.|.+.+|.+..... ..+ .+++|++
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 345556666665552 2335566666666666666633 222232 23556666666666543321 111 4667777
Q ss_pred EEeecCcceeecc----chhhCCCCCcEEeccCc
Q 039577 160 LFLWQNNLCGIVP----DSICNASEVTILELSKN 189 (282)
Q Consensus 160 L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~ 189 (282)
|.+-+|.++ .-. ..+..+++|++||++.-
T Consensus 118 Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence 777666665 211 23456677777777654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00025 Score=60.35 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=27.2
Q ss_pred CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccC
Q 039577 32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN 93 (282)
Q Consensus 32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 93 (282)
.+++++.|++++|.+. .+|. -..+|+.|.++++.-...+|. .+ .++|+.|.+.+|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCc
Confidence 3556666666666544 3341 123466666665432223333 11 235666666655
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=8.3e-06 Score=64.46 Aligned_cols=218 Identities=17% Similarity=0.119 Sum_probs=127.3
Q ss_pred ccCCCCCcEEEcCCCcccccCCC---CccCCCCCccEEEcccCeec---ccCC-------cCCcCCCCceEEEecCCCCC
Q 039577 54 LWQLQRLRIVDLSSGIIPGSLPD---DTSGDCIMLRRLSFSFNKIR---GWIP-------QKIGNLTELVELYLDGNNLQ 120 (282)
Q Consensus 54 l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~ 120 (282)
+..+..+..+++++|.+...-.. ..+..-.+|+..+++..-.. ..++ ..+-++++|+..++++|-+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf- 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF- 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-
Confidence 34578899999999998532211 02344556777766543211 1112 2244679999999999987
Q ss_pred CCCCCc----cccCCCCCcEEEecCccccccCCCCc--------------CCCCccEEEeecCcceeeccch-----hhC
Q 039577 121 AGLLPS----VIFNSSNIQVIILYGNHLSGHLRSSI--------------YLPNLENLFLWQNNLCGIVPDS-----ICN 177 (282)
Q Consensus 121 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~--------------~~~~L~~L~l~~~~~~~~~~~~-----l~~ 177 (282)
....|. .+.+-..|++|.+.+|++....-.-+ .-+.|+......|++. ..+.. +..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence 333333 34566889999999998753321111 2466788877777765 43321 222
Q ss_pred CCCCcEEeccCcccceecCCCCCCCC-CcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeee
Q 039577 178 ASEVTILELSKNLFSCLIPNTSGVFP-NSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALE 256 (282)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~ 256 (282)
-..|+++.+..|.|. |.++..+. .-+..+. +|+.||+..|-++......++. .+..| +.|++|.+.+|.+.
T Consensus 184 h~~lk~vki~qNgIr---pegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~--al~~W--~~lrEL~lnDClls 255 (388)
T COG5238 184 HENLKEVKIQQNGIR---PEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLAD--ALCEW--NLLRELRLNDCLLS 255 (388)
T ss_pred hcCceeEEeeecCcC---cchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHH--Hhccc--chhhhccccchhhc
Confidence 357888888888765 33322221 1223344 8888888888776333222211 11122 44677777777776
Q ss_pred eecchh-hh-----ccCCCceeeccCccCCC
Q 039577 257 GQIPTC-LA-----NLTSLISLNLRSIRLNS 281 (282)
Q Consensus 257 ~~~~~~-~~-----~l~~L~~l~l~~n~~~~ 281 (282)
...... +. ..|+|+.|-..+|.+.+
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 554332 22 24778888888877654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=8.9e-05 Score=56.13 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=60.7
Q ss_pred CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccC-CcCCcCCCCceEEE
Q 039577 35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWI-PQKIGNLTELVELY 113 (282)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 113 (282)
....+||.+|.+.. + ..+..+..|.+|.+..|.++ .+....-.-+++|++|.+.+|.+.... -..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 55667777776642 2 23456677777777777776 444424445666777777777655211 12244566777777
Q ss_pred ecCCCCCC--CCCCccccCCCCCcEEEecCc
Q 039577 114 LDGNNLQA--GLLPSVIFNSSNIQVIILYGN 142 (282)
Q Consensus 114 l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 142 (282)
+-+|.++. ..-...+..+++|+.|+...-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77776532 111224455677777776543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=3.4e-06 Score=76.99 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCceEEEecCCCCCCCCCCcccc-CCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCCCCCcE
Q 039577 107 TELVELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTI 183 (282)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 183 (282)
.+|++|++++...-....+..++ .+|.|++|.+++-.+.......+ .+++|+.||++++.++ .+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 56788888775442222233333 35788888887765532211111 5788888888888776 44 45667778887
Q ss_pred EeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCC-ccCccccccccceeeccCCeeeeecchh
Q 039577 184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL-SNMIKCNLESLFGLLLGGDALEGQIPTC 262 (282)
Q Consensus 184 L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~l~~l~l~~l~~L~l~~n~~~~~~~~~ 262 (282)
|.+.+-.+... .--..+..+. +|+.||++....... +..+.+. ..-+. +|+|+.||.+++.+.+..-+.
T Consensus 200 L~mrnLe~e~~------~~l~~LF~L~-~L~vLDIS~~~~~~~-~~ii~qYlec~~~--LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESY------QDLIDLFNLK-KLRVLDISRDKNNDD-TKIIEQYLECGMV--LPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCch------hhHHHHhccc-CCCeeeccccccccc-hHHHHHHHHhccc--CccccEEecCCcchhHHHHHH
Confidence 77776655421 0001345565 888888887544311 1111110 00011 477778887777776554433
Q ss_pred h-hccCCCceee
Q 039577 263 L-ANLTSLISLN 273 (282)
Q Consensus 263 ~-~~l~~L~~l~ 273 (282)
+ ...|+|+.+-
T Consensus 270 ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 270 LLNSHPNLQQIA 281 (699)
T ss_pred HHHhCccHhhhh
Confidence 2 2345555544
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=3.8e-06 Score=59.47 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=76.4
Q ss_pred CcEEEecCccccccCCCCc----CCCCccEEEeecCcceeeccchhh-CCCCCcEEeccCcccceecCCCCCCCCCcccc
Q 039577 134 IQVIILYGNHLSGHLRSSI----YLPNLENLFLWQNNLCGIVPDSIC-NASEVTILELSKNLFSCLIPNTSGVFPNSIGN 208 (282)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~ 208 (282)
+..++++.|.+-.. ++.. ....|..+++++|.+. .+|..+. .++.+++|++++|.++ .+|..+-.
T Consensus 29 ~h~ldLssc~lm~i-~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis--------dvPeE~Aa 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYI-ADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS--------DVPEELAA 98 (177)
T ss_pred hhhcccccchhhHH-HHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh--------hchHHHhh
Confidence 44555666644311 1111 4566777888888887 6666554 4568888999998887 45555666
Q ss_pred cccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 209 LSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 209 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
+| .|+.++++.|.+. ..|..+..+.++. .|+.-+|... ++|..+-.-...-..+++++.++
T Consensus 99 m~-aLr~lNl~~N~l~-~~p~vi~~L~~l~--------~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 99 MP-ALRSLNLRFNPLN-AEPRVIAPLIKLD--------MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred hH-HhhhcccccCccc-cchHHHHHHHhHH--------HhcCCCCccc-cCcHHHhccccHHHHHhcCCccc
Confidence 77 8899999988887 5566666654443 4444456555 55554443333333444444443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=3e-06 Score=60.01 Aligned_cols=110 Identities=21% Similarity=0.232 Sum_probs=79.2
Q ss_pred CceEEEecCCCCCCCCCCcc---ccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcE
Q 039577 108 ELVELYLDGNNLQAGLLPSV---IFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI 183 (282)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 183 (282)
.+..++++.+.+- .++.. +.....|+..++++|.+...++... +++.++.+.+++|.+. .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455677766552 13333 3334567778999999875554333 7778999999999997 88988999999999
Q ss_pred EeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcc
Q 039577 184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230 (282)
Q Consensus 184 L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 230 (282)
++++.|.+. ..|..+.++. ++-.|+..+|... .+|-.
T Consensus 105 lNl~~N~l~--------~~p~vi~~L~-~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLN--------AEPRVIAPLI-KLDMLDSPENARA-EIDVD 141 (177)
T ss_pred cccccCccc--------cchHHHHHHH-hHHHhcCCCCccc-cCcHH
Confidence 999999887 6666666665 7777888777665 45443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=2.7e-05 Score=71.27 Aligned_cols=130 Identities=19% Similarity=0.200 Sum_probs=78.3
Q ss_pred CCCcEEEecCccccccCCCCc-----CCCCccEEEeecCcce-eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCc
Q 039577 132 SNIQVIILYGNHLSGHLRSSI-----YLPNLENLFLWQNNLC-GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNS 205 (282)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 205 (282)
.+|++|+++|... ....|. .+|.|++|.+.+-.+. +++......+++|..||+++..++.. ..
T Consensus 122 ~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---------~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---------SG 190 (699)
T ss_pred HhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---------HH
Confidence 4688888877433 222222 4788888888775543 23333445678888888888777621 23
Q ss_pred ccccccccceEEeeccccee-cCCccccCCccCccccccccceeeccCCeeeeec--c----hhhhccCCCceeeccCcc
Q 039577 206 IGNLSTSLENFYASSCQLSG-GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQI--P----TCLANLTSLISLNLRSIR 278 (282)
Q Consensus 206 ~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~--~----~~~~~l~~L~~l~l~~n~ 278 (282)
+..+. +|+.|.+.+=.+.. ..-..+.. +.+|+.||+|.......- . ++-..+|+|++||.|+..
T Consensus 191 IS~Lk-nLq~L~mrnLe~e~~~~l~~LF~--------L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 191 ISRLK-NLQVLSMRNLEFESYQDLIDLFN--------LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred Hhccc-cHHHHhccCCCCCchhhHHHHhc--------ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 44555 77777777644331 00011222 578888999876544221 1 233358999999999987
Q ss_pred CCC
Q 039577 279 LNS 281 (282)
Q Consensus 279 ~~~ 281 (282)
+++
T Consensus 262 i~~ 264 (699)
T KOG3665|consen 262 INE 264 (699)
T ss_pred hhH
Confidence 753
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=5.4e-06 Score=65.67 Aligned_cols=101 Identities=22% Similarity=0.134 Sum_probs=73.7
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCC-CCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLP-DDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~ 87 (282)
-..++.|+++||++... ....+++.|++|.|+-|+++. + ..+..|++|++|+++.|.|. ++. ..-+.++|+|++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 35788899999988642 123578999999999999974 3 34678999999999999986 333 224578899999
Q ss_pred EEcccCeecccCCcC-----CcCCCCceEEEe
Q 039577 88 LSFSFNKIRGWIPQK-----IGNLTELVELYL 114 (282)
Q Consensus 88 L~l~~~~~~~~~~~~-----~~~l~~L~~L~l 114 (282)
|-+..|..-+.-+.. +..+++|++||=
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 988766554433332 446788888863
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00028 Score=55.60 Aligned_cols=128 Identities=19% Similarity=0.156 Sum_probs=79.1
Q ss_pred ceEEEEcCCC-ccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCC--cccccCCCCccCCCCCccE
Q 039577 11 RVTALSLPNL-TLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSG--IIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 11 ~l~~l~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~ 87 (282)
.++.+.+..+ ...+++......+..|+.+.+.+..++.. ..+..+++|+.|.++.| .+.+.++. ....+|+|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~ 95 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKV 95 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeE
Confidence 3444555544 12344555555667777777776666532 23456789999999998 44334443 4456699999
Q ss_pred EEcccCeecccCCcC---CcCCCCceEEEecCCCCCCCCC--CccccCCCCCcEEEecCcc
Q 039577 88 LSFSFNKIRGWIPQK---IGNLTELVELYLDGNNLQAGLL--PSVIFNSSNIQVIILYGNH 143 (282)
Q Consensus 88 L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~ 143 (282)
+++++|++.. +.. +..+.+|..|++.++..+.-.- ...+.-+++|++|+.....
T Consensus 96 l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 96 LNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred EeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 9999998773 333 4456778888888887643111 1234446778777765443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00061 Score=53.70 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=31.1
Q ss_pred cCCCCccEEEecCC--cceeeCCccccCCCCCcEEEcCCCcccccCCC-CccCCCCCccEEEcccCeec
Q 039577 31 GNLSFLVSLTSVAK--SFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD-DTSGDCIMLRRLSFSFNKIR 96 (282)
Q Consensus 31 ~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 96 (282)
..+++|+.|.+++| +..+.++...-.+++|+++++++|++.. +.. .-+..+++|..|++.+|...
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCcc
Confidence 34555566666655 3333343333445566666666655531 110 12344455555555555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.60 E-value=0.016 Score=41.25 Aligned_cols=85 Identities=19% Similarity=0.247 Sum_probs=39.6
Q ss_pred cccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577 29 HIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108 (282)
Q Consensus 29 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 108 (282)
+|.++++|+.+.+.. .+...-...+..+.+|+.+.+..+ +. .++...+..++.++.+.+.. .+.......+...+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 455666777777653 333223344556667777777664 33 45544566666677777654 222112334455666
Q ss_pred ceEEEecCC
Q 039577 109 LVELYLDGN 117 (282)
Q Consensus 109 L~~L~l~~~ 117 (282)
++.+++..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 766666543
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.56 E-value=1.4e-05 Score=66.65 Aligned_cols=85 Identities=19% Similarity=0.131 Sum_probs=49.9
Q ss_pred CceEEEEcCCCccccC--CCccccCCCCccEEEecCCcceee--CCccccCCCCCcEEEcCCC-cccccCCCCccCCCCC
Q 039577 10 RRVTALSLPNLTLGGT--IPPHIGNLSFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLSSG-IIPGSLPDDTSGDCIM 84 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~ 84 (282)
+.++.|+++|+.-.+. +-.....+++++.|++.++..... +-..-..|++|+.+++..+ .+++..-......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5678888888744332 222334678888888877763221 1111235788888888874 3432211113346778
Q ss_pred ccEEEcccCe
Q 039577 85 LRRLSFSFNK 94 (282)
Q Consensus 85 L~~L~l~~~~ 94 (282)
|+++++++|.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 8888887775
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.41 E-value=0.0024 Score=30.18 Aligned_cols=19 Identities=37% Similarity=0.516 Sum_probs=10.8
Q ss_pred cceeeccCCeeeeecchhhh
Q 039577 245 LFGLLLGGDALEGQIPTCLA 264 (282)
Q Consensus 245 l~~L~l~~n~~~~~~~~~~~ 264 (282)
|++||+++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 5555444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.93 E-value=0.066 Score=38.02 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
.+++.+.+.. .+...-..+|..+++|+.+.+..+ +...-...+.++++++.+.+.. .+. .++...+..+++++.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccc
Confidence 3688888875 454433456788889999999874 4433345677888999999976 433 45555778899999999
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCC
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGN 117 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 117 (282)
+..+ +.......+... .++.+.+..+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECCC
Confidence 9654 332224456665 8898888753
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0035 Score=29.59 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=13.9
Q ss_pred ccceEEeecccceecCCccccC
Q 039577 212 SLENFYASSCQLSGGIPVGFGN 233 (282)
Q Consensus 212 ~L~~L~l~~n~~~~~~~~~~~~ 233 (282)
+|++|++++|+++ .+|.++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3677777777777 66665543
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.47 E-value=6e-05 Score=63.06 Aligned_cols=86 Identities=17% Similarity=0.035 Sum_probs=54.3
Q ss_pred CCccEEEecCCcceee--CCccccCCCCCcEEEcCCCcc-cccCCCCccCCCCCccEEEcccCe-ecccCCc-CCcCCCC
Q 039577 34 SFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLSSGII-PGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQ-KIGNLTE 108 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~ 108 (282)
..|+.|.++++.-.+. +.....++++++.|.+.++.. ++..-......+..|+++++..|. ++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3688888888765433 233445799999999998763 211111123567889999988753 3322111 1235788
Q ss_pred ceEEEecCCCC
Q 039577 109 LVELYLDGNNL 119 (282)
Q Consensus 109 L~~L~l~~~~~ 119 (282)
|++++++++..
T Consensus 218 L~~lNlSwc~q 228 (483)
T KOG4341|consen 218 LKYLNLSWCPQ 228 (483)
T ss_pred HHHhhhccCch
Confidence 99999998864
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.00066 Score=54.19 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCC--cCCcCCCCce
Q 039577 33 LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIP--QKIGNLTELV 110 (282)
Q Consensus 33 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 110 (282)
+.+.+.|+.-+|.+.... -...|+.|+.|.++-|++. .+.. +..+.+|++|++..|.+.+ +. ..+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence 445666777777776421 1246888999999999886 4443 6788889999998888873 33 2466788889
Q ss_pred EEEecCCCCCCCCCC-----ccccCCCCCcEEE
Q 039577 111 ELYLDGNNLQAGLLP-----SVIFNSSNIQVII 138 (282)
Q Consensus 111 ~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~ 138 (282)
.|.+..|.. .+..+ .++.-+++|+.|+
T Consensus 92 ~LWL~ENPC-c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPC-CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCc-ccccchhHHHHHHHHcccchhcc
Confidence 998888875 22222 1334456666664
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.0051 Score=46.84 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecc-cceecCCccccC
Q 039577 155 PNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC-QLSGGIPVGFGN 233 (282)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~ 233 (282)
-.++.++.+++.+..+.-..+..+++++.+.+.+|.--+. .+++. ++....+|+.|++++| +|+.....++.+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~~----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLER----LGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHHH----hcccccchheeeccCCCeechhHHHHHHH
Confidence 3477788888877755566677888888888888843321 01111 2222238999999988 677555566677
Q ss_pred CccCccccccc
Q 039577 234 LSNMIKCNLES 244 (282)
Q Consensus 234 l~~l~~l~l~~ 244 (282)
+++|+.|++..
T Consensus 175 lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 LKNLRRLHLYD 185 (221)
T ss_pred hhhhHHHHhcC
Confidence 77666665433
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.77 E-value=0.048 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=6.6
Q ss_pred CCCceeeccCccCC
Q 039577 267 TSLISLNLRSIRLN 280 (282)
Q Consensus 267 ~~L~~l~l~~n~~~ 280 (282)
++|++|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.46 E-value=0.027 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=11.0
Q ss_pred cccceeeccCCeeeeecchhh
Q 039577 243 ESLFGLLLGGDALEGQIPTCL 263 (282)
Q Consensus 243 ~~l~~L~l~~n~~~~~~~~~~ 263 (282)
++|+.|++++|.+++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666665544433
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.038 Score=42.28 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=28.1
Q ss_pred ccccceeeccCC-eeeeecchhhhccCCCceeeccC
Q 039577 242 LESLFGLLLGGD-ALEGQIPTCLANLTSLISLNLRS 276 (282)
Q Consensus 242 l~~l~~L~l~~n-~~~~~~~~~~~~l~~L~~l~l~~ 276 (282)
.++|+.|++++| .||+..-.++..+++|+.+.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 478999999965 78877778888888888877653
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.48 E-value=0.00077 Score=59.24 Aligned_cols=172 Identities=19% Similarity=0.122 Sum_probs=79.0
Q ss_pred CcCCCCceEEEecCCCCCCCCC---CccccCC-CCCcEEEecCccccccCCCCc-----CCCCccEEEeecCccee----
Q 039577 103 IGNLTELVELYLDGNNLQAGLL---PSVIFNS-SNIQVIILYGNHLSGHLRSSI-----YLPNLENLFLWQNNLCG---- 169 (282)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~---- 169 (282)
+...+.|+.|++++|.+..... ...+... ..+++|.+..|.++......+ ....++.++++.|.+..
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 3344556666666665521111 1111222 334445555554443222111 23445555555554420
Q ss_pred eccchhh----CCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccc-cc
Q 039577 170 IVPDSIC----NASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL-ES 244 (282)
Q Consensus 170 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l-~~ 244 (282)
.++..+. ...++++|++.+|.++..... .+-.++...+..+.++++..|.+.+.....+.. .+. .. +.
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~---~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~--~l~--~~~~~ 263 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCA---LLDEVLASGESLLRELDLASNKLGDVGVEKLLP--CLS--VLSET 263 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHH---HHHHHHhccchhhHHHHHHhcCcchHHHHHHHH--Hhc--ccchh
Confidence 1122222 245667777777766532111 111223333323555777776665331111100 000 01 35
Q ss_pred cceeeccCCeeeeecch----hhhccCCCceeeccCccCCC
Q 039577 245 LFGLLLGGDALEGQIPT----CLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 245 l~~L~l~~n~~~~~~~~----~~~~l~~L~~l~l~~n~~~~ 281 (282)
+++++++.|.+++.... .+..++.++++.+++|.+..
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 67777777777755443 34456777777777777653
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.57 E-value=0.39 Score=23.33 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=8.6
Q ss_pred CCCcEEEcCCCcccccCCC
Q 039577 58 QRLRIVDLSSGIIPGSLPD 76 (282)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~ 76 (282)
++|+.|++.+|.+. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555553 4443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.57 E-value=0.39 Score=23.33 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=8.6
Q ss_pred CCCcEEEcCCCcccccCCC
Q 039577 58 QRLRIVDLSSGIIPGSLPD 76 (282)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~ 76 (282)
++|+.|++.+|.+. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555553 4443
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.97 E-value=0.13 Score=45.58 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=48.3
Q ss_pred CCCccEEEeecCcceee--ccchhhCCCCCcEEeccCc-ccceecCCCCCCCCCcccccccccceEEeeccc-ceecCCc
Q 039577 154 LPNLENLFLWQNNLCGI--VPDSICNASEVTILELSKN-LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ-LSGGIPV 229 (282)
Q Consensus 154 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~-~~~~~~~ 229 (282)
.+.|+.+.+..+..... +-......+.|+.|+++.+ ......+. ......... ..|+.++++.+. ++...-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~-~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL---LLLLLLSIC-RKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh---Hhhhhhhhc-CCcCccchhhhhccCchhHH
Confidence 45566666655533212 2233345566666666652 11111110 001111122 266666666655 3322222
Q ss_pred cccCCccCccccccccceeeccCCe-eeeecc-hhhhccCCCceeeccCcc
Q 039577 230 GFGNLSNMIKCNLESLFGLLLGGDA-LEGQIP-TCLANLTSLISLNLRSIR 278 (282)
Q Consensus 230 ~~~~l~~l~~l~l~~l~~L~l~~n~-~~~~~~-~~~~~l~~L~~l~l~~n~ 278 (282)
.++.. +++|+.|.+..+. +++..- .....+++|+++++++|.
T Consensus 263 ~l~~~-------c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 263 ALASR-------CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhh-------CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 22210 2344455444443 333322 233345666666666554
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.42 E-value=0.1 Score=46.12 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=5.1
Q ss_pred ccceEEeeccc
Q 039577 212 SLENFYASSCQ 222 (282)
Q Consensus 212 ~L~~L~l~~n~ 222 (282)
.++.+.+..+.
T Consensus 363 ~l~~~~l~~~~ 373 (482)
T KOG1947|consen 363 KLTDLSLSYCG 373 (482)
T ss_pred Ccchhhhhhhh
Confidence 44444444443
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.28 E-value=0.93 Score=22.26 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=6.8
Q ss_pred CCceeeccCccCC
Q 039577 268 SLISLNLRSIRLN 280 (282)
Q Consensus 268 ~L~~l~l~~n~~~ 280 (282)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555553
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.82 E-value=0.57 Score=23.39 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=9.6
Q ss_pred cccceeeccCCeeeee
Q 039577 243 ESLFGLLLGGDALEGQ 258 (282)
Q Consensus 243 ~~l~~L~l~~n~~~~~ 258 (282)
++|++|++++|.+..+
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 3566666666666543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.31 E-value=0.037 Score=43.36 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=55.7
Q ss_pred cccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577 29 HIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108 (282)
Q Consensus 29 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 108 (282)
.+..+...+.||++.|... .+-..+.-++.+..|+++.|.+. .+|. .++....++.++.+.|..+ ..|.+++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3445667777777766653 22233445566667777777764 5555 4556666666777766666 56777777777
Q ss_pred ceEEEecCCCC
Q 039577 109 LVELYLDGNNL 119 (282)
Q Consensus 109 L~~L~l~~~~~ 119 (282)
+++++.-.+.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 77777766654
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.36 E-value=2 Score=21.06 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=7.0
Q ss_pred ccceEEeecccce
Q 039577 212 SLENFYASSCQLS 224 (282)
Q Consensus 212 ~L~~L~l~~n~~~ 224 (282)
+|+.|++++|.++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.25 E-value=0.055 Score=42.44 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
..+++.||++.|.+. .....+..++.+..|+++-|.+. .+|..+.++..++.+++..|+.. ..|. .++..++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccCCcchh
Confidence 567888999988765 23445666788999999977665 57888888899999999999985 7887 78999999999
Q ss_pred EcccCeeccc
Q 039577 89 SFSFNKIRGW 98 (282)
Q Consensus 89 ~l~~~~~~~~ 98 (282)
+...+.+...
T Consensus 117 e~k~~~~~~~ 126 (326)
T KOG0473|consen 117 EQKKTEFFRK 126 (326)
T ss_pred hhccCcchHH
Confidence 9988876643
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.89 E-value=4 Score=19.72 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=10.9
Q ss_pred cCCCceeeccCcc-CC
Q 039577 266 LTSLISLNLRSIR-LN 280 (282)
Q Consensus 266 l~~L~~l~l~~n~-~~ 280 (282)
+++|++|++++|. |+
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888874 44
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.10 E-value=16 Score=32.17 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc---CCCCCcEEEcCCCcccccCCC
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW---QLQRLRIVDLSSGIIPGSLPD 76 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~ 76 (282)
.+.+++++++.|.+..+.|..+..-..= +.++-|..+...-..+. .=..+.+++++.|...+.+|.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 4566777777776665555544321110 33333333221100000 113456677777776555554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.64 E-value=9.2 Score=34.27 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=33.8
Q ss_pred CCCCccEEEeecCccee--eccchhhCCCCCcEEeccCc--ccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 153 YLPNLENLFLWQNNLCG--IVPDSICNASEVTILELSKN--LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 153 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
+.+.+..+.+++|++.. .+.......|.|++|++++| .+... .+++. ++.+ .|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-----~el~K-~k~l--~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-----SELDK-LKGL--PLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-----hhhhh-hcCC--CHHHeeecCCccc
Confidence 45666777777776651 12222334567777777777 22211 11111 2222 3777777777665
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=45.18 E-value=0.6 Score=41.43 Aligned_cols=114 Identities=22% Similarity=0.186 Sum_probs=68.4
Q ss_pred ccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc---
Q 039577 157 LENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV--- 229 (282)
Q Consensus 157 L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~--- 229 (282)
+..+.+.+|.+... +...+...+.|..|++++|.+.+. +...+.+.+......++.|++..|.+++....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~---g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE---GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH---hHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 66777777776632 233455667888888888888733 22233333333323677788887777643322
Q ss_pred -cccCCccCccccccccceeeccCCeeeee----cchhhh----ccCCCceeeccCccCCC
Q 039577 230 -GFGNLSNMIKCNLESLFGLLLGGDALEGQ----IPTCLA----NLTSLISLNLRSIRLNS 281 (282)
Q Consensus 230 -~~~~l~~l~~l~l~~l~~L~l~~n~~~~~----~~~~~~----~l~~L~~l~l~~n~~~~ 281 (282)
.+.+ ..+++.++++.|.+... ++..+. ...+++.+++.+|.++.
T Consensus 166 ~~L~~--------~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~ 218 (478)
T KOG4308|consen 166 AVLEK--------NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS 218 (478)
T ss_pred HHHhc--------ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence 2222 25677778887776422 233344 36778888888887763
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.16 E-value=17 Score=32.76 Aligned_cols=64 Identities=30% Similarity=0.290 Sum_probs=33.4
Q ss_pred CCCCceEEEecCCCCCCC-CCCccccCCCCCcEEEecCccccccCCCCc---CCCCccEEEeecCcce
Q 039577 105 NLTELVELYLDGNNLQAG-LLPSVIFNSSNIQVIILYGNHLSGHLRSSI---YLPNLENLFLWQNNLC 168 (282)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~ 168 (282)
+.+.+..+.+++|++..- .+.......++|+.|+++.|.........+ +...|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 346666777777765321 111122234677777777773221111112 3455677777777665
Done!