Query 039577
Match_columns 282
No_of_seqs 131 out of 2609
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-35 6.6E-40 245.3 19.1 257 1-278 39-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-34 6.1E-39 266.2 22.2 268 11-281 369-718 (768)
3 3rgz_A Protein brassinosteroid 100.0 1.1E-32 3.8E-37 254.3 20.7 214 10-233 318-560 (768)
4 4eco_A Uncharacterized protein 100.0 5.8E-33 2E-37 251.1 16.1 263 1-280 73-470 (636)
5 3v47_A TOLL-like receptor 5B a 100.0 3.8E-31 1.3E-35 230.4 22.8 139 9-149 29-171 (455)
6 2id5_A Lingo-1, leucine rich r 100.0 6.3E-31 2.1E-35 230.5 22.1 269 9-280 31-333 (477)
7 4ecn_A Leucine-rich repeat pro 100.0 1.2E-31 4.2E-36 247.5 14.3 263 1-280 315-710 (876)
8 2id5_A Lingo-1, leucine rich r 100.0 9.8E-30 3.4E-34 222.9 21.4 239 9-258 55-335 (477)
9 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-30 2E-34 212.3 16.2 228 34-281 50-282 (313)
10 3t6q_A CD180 antigen; protein- 100.0 3E-29 1E-33 226.0 21.7 137 9-147 32-168 (606)
11 3t6q_A CD180 antigen; protein- 100.0 1.8E-29 6.1E-34 227.4 20.1 262 11-280 255-560 (606)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-28 9.4E-33 219.7 24.8 136 9-145 31-166 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-29 2.5E-33 231.1 21.0 271 9-281 23-376 (844)
14 4eco_A Uncharacterized protein 100.0 4.1E-30 1.4E-34 232.5 12.0 264 9-281 205-527 (636)
15 3v47_A TOLL-like receptor 5B a 100.0 2.4E-28 8.3E-33 212.7 21.2 263 13-281 13-385 (455)
16 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-28 5.9E-33 223.8 21.1 262 9-280 24-366 (680)
17 3o6n_A APL1; leucine-rich repe 100.0 6.2E-28 2.1E-32 206.2 22.0 253 10-281 45-332 (390)
18 4fcg_A Uncharacterized protein 100.0 6.7E-29 2.3E-33 207.2 15.0 233 10-280 81-314 (328)
19 1xku_A Decorin; proteoglycan, 100.0 1.6E-27 5.6E-32 199.1 22.7 213 9-236 51-264 (330)
20 4fcg_A Uncharacterized protein 100.0 5.4E-28 1.8E-32 201.7 19.5 211 33-281 80-291 (328)
21 4ecn_A Leucine-rich repeat pro 100.0 1E-28 3.6E-33 228.0 15.3 159 9-173 447-636 (876)
22 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-27 3.8E-32 215.7 21.3 110 9-119 55-165 (606)
23 3oja_B Anopheles plasmodium-re 100.0 1.6E-27 5.4E-32 214.2 21.6 254 10-281 51-338 (597)
24 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-27 5.6E-32 217.4 22.0 269 10-281 49-419 (680)
25 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-27 7.4E-32 198.5 20.6 254 9-278 53-331 (332)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-27 4.5E-32 213.4 19.9 108 9-120 51-159 (562)
27 2z7x_B TOLL-like receptor 1, v 100.0 7.1E-28 2.4E-32 213.2 16.8 128 9-144 20-150 (520)
28 2z66_A Variable lymphocyte rec 100.0 9E-28 3.1E-32 198.6 15.4 229 10-256 28-261 (306)
29 1xku_A Decorin; proteoglycan, 100.0 7.8E-27 2.7E-31 195.0 20.9 251 9-278 75-330 (330)
30 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-27 4.8E-32 212.7 15.9 158 9-167 25-184 (549)
31 2ft3_A Biglycan; proteoglycan, 100.0 7.5E-27 2.6E-31 195.3 18.9 242 11-281 34-278 (332)
32 2z80_A TOLL-like receptor 2, v 100.0 1.7E-27 5.9E-32 200.8 15.0 255 10-281 52-315 (353)
33 3zyj_A Leucine-rich repeat-con 100.0 1.3E-26 4.4E-31 201.1 20.9 246 11-279 44-291 (440)
34 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-27 1.7E-31 207.8 18.7 258 13-280 3-412 (520)
35 2z63_A TOLL-like receptor 4, v 99.9 1E-26 3.6E-31 207.8 20.8 110 9-119 27-136 (570)
36 2z66_A Variable lymphocyte rec 99.9 4.6E-27 1.6E-31 194.3 17.1 247 13-281 10-262 (306)
37 2z63_A TOLL-like receptor 4, v 99.9 1.5E-26 5.2E-31 206.8 21.7 155 9-165 51-210 (570)
38 4fmz_A Internalin; leucine ric 99.9 2E-26 6.8E-31 193.8 21.1 247 10-281 44-325 (347)
39 3zyi_A Leucine-rich repeat-con 99.9 1.5E-26 5.3E-31 201.2 21.1 245 12-279 56-302 (452)
40 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-26 7.2E-31 188.5 18.4 181 34-224 32-214 (285)
41 4g8a_A TOLL-like receptor 4; l 99.9 7.4E-26 2.5E-30 204.5 23.6 134 9-143 51-184 (635)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-26 9.7E-31 204.8 20.4 259 12-280 33-441 (562)
43 3o6n_A APL1; leucine-rich repe 99.9 1.7E-26 5.9E-31 197.2 18.0 252 9-281 68-353 (390)
44 3zyi_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 195.8 23.2 230 9-256 74-303 (452)
45 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-26 8.8E-31 213.9 19.6 111 9-119 47-160 (844)
46 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-26 6.4E-31 205.4 17.5 109 9-118 49-159 (549)
47 4fmz_A Internalin; leucine ric 99.9 1E-25 3.5E-30 189.4 20.3 244 10-281 66-347 (347)
48 3zyj_A Leucine-rich repeat-con 99.9 2.3E-25 7.8E-30 193.2 22.8 230 9-256 63-292 (440)
49 3oja_B Anopheles plasmodium-re 99.9 1.4E-25 4.8E-30 201.6 19.6 237 32-280 49-314 (597)
50 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-27 1.2E-31 196.0 8.0 234 10-275 34-270 (317)
51 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-25 1.1E-29 181.4 19.3 250 9-278 31-285 (285)
52 2z80_A TOLL-like receptor 2, v 99.9 4E-26 1.4E-30 192.4 13.7 246 15-281 36-291 (353)
53 1wwl_A Monocyte differentiatio 99.9 1E-27 3.5E-32 198.8 3.1 247 10-282 43-311 (312)
54 1o6v_A Internalin A; bacterial 99.9 5.7E-25 2E-29 192.0 20.3 170 9-192 67-256 (466)
55 1o6v_A Internalin A; bacterial 99.9 7.5E-25 2.6E-29 191.3 18.7 247 10-281 90-389 (466)
56 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-24 7.5E-29 187.5 20.7 247 9-281 63-353 (457)
57 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-25 4E-30 186.8 11.4 239 10-280 10-250 (317)
58 3oja_A Leucine-rich immune mol 99.9 9.6E-26 3.3E-30 197.6 11.1 234 10-275 34-270 (487)
59 3bz5_A Internalin-J, INLJ; leu 99.9 8.4E-24 2.9E-28 183.8 22.1 250 9-281 41-332 (457)
60 3oja_A Leucine-rich immune mol 99.9 2.7E-24 9.2E-29 188.4 14.1 217 32-280 32-250 (487)
61 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 167.8 19.2 209 2-224 9-218 (270)
62 2z62_A TOLL-like receptor 4, v 99.9 3.8E-23 1.3E-27 168.3 18.8 224 14-259 11-240 (276)
63 1jl5_A Outer protein YOPM; leu 99.9 7.2E-23 2.5E-27 177.8 21.1 244 11-281 132-410 (454)
64 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-23 1.6E-27 184.7 20.4 229 10-281 40-298 (622)
65 2z62_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 168.9 17.4 209 9-227 27-240 (276)
66 1wwl_A Monocyte differentiatio 99.9 3.5E-25 1.2E-29 183.5 5.1 224 11-257 64-310 (312)
67 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-22 6.3E-27 182.3 23.3 151 14-169 35-187 (635)
68 1jl5_A Outer protein YOPM; leu 99.9 1E-23 3.6E-28 183.1 12.5 231 9-281 10-271 (454)
69 3rfs_A Internalin B, repeat mo 99.9 9.9E-23 3.4E-27 165.5 16.1 204 10-234 41-245 (272)
70 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-26 8.4E-31 200.3 -7.3 267 11-281 86-412 (461)
71 2o6q_A Variable lymphocyte rec 99.9 2.2E-21 7.6E-26 157.4 20.0 203 35-258 17-220 (270)
72 1p9a_G Platelet glycoprotein I 99.9 2E-21 6.8E-26 159.1 19.0 198 9-224 9-208 (290)
73 3rfs_A Internalin B, repeat mo 99.9 4.9E-22 1.7E-26 161.4 14.9 224 15-269 24-248 (272)
74 3goz_A Leucine-rich repeat-con 99.9 5.4E-25 1.9E-29 186.1 -4.4 204 16-224 4-238 (362)
75 1p9a_G Platelet glycoprotein I 99.9 4.4E-21 1.5E-25 157.1 17.2 201 30-256 6-208 (290)
76 2ast_B S-phase kinase-associat 99.9 6.1E-24 2.1E-28 177.8 0.2 250 9-282 46-308 (336)
77 2xwt_C Thyrotropin receptor; s 99.9 3.4E-21 1.2E-25 153.4 16.0 203 24-253 24-236 (239)
78 2ca6_A RAN GTPase-activating p 99.9 3.1E-24 1.1E-28 183.0 -2.8 247 25-281 23-317 (386)
79 1z7x_W Ribonuclease inhibitor; 99.9 5.1E-25 1.7E-29 192.0 -8.1 266 11-281 29-355 (461)
80 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.5E-26 161.9 12.5 227 34-281 64-308 (310)
81 3m19_A Variable lymphocyte rec 99.9 2.5E-20 8.6E-25 149.5 18.4 185 2-194 9-194 (251)
82 4glp_A Monocyte differentiatio 99.9 1.7E-21 5.8E-26 161.2 11.0 228 9-257 63-308 (310)
83 1h6u_A Internalin H; cell adhe 99.9 2.1E-20 7.1E-25 154.5 17.5 192 9-225 40-231 (308)
84 1h6u_A Internalin H; cell adhe 99.9 1.2E-20 4E-25 156.0 15.0 195 30-257 37-231 (308)
85 2ca6_A RAN GTPase-activating p 99.9 3.5E-24 1.2E-28 182.7 -6.5 254 9-275 31-338 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 2.9E-20 9.8E-25 148.1 16.5 205 49-278 25-237 (239)
87 4ay9_X Follicle-stimulating ho 99.8 5.2E-20 1.8E-24 154.8 17.1 238 13-277 12-256 (350)
88 3g06_A SSPH2 (leucine-rich rep 99.8 8E-20 2.7E-24 163.7 18.6 214 9-267 60-308 (622)
89 3m19_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 145.5 16.7 180 58-258 14-194 (251)
90 2ast_B S-phase kinase-associat 99.8 1.4E-22 4.7E-27 169.5 -1.0 235 10-265 70-315 (336)
91 3goz_A Leucine-rich repeat-con 99.8 5.3E-23 1.8E-27 173.9 -4.1 246 9-260 21-301 (362)
92 3cvr_A Invasion plasmid antige 99.8 5.1E-19 1.8E-23 156.8 14.3 184 11-231 60-250 (571)
93 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.6E-23 154.1 16.8 195 35-267 60-254 (571)
94 2o6s_A Variable lymphocyte rec 99.8 2.3E-18 7.9E-23 134.1 15.0 173 13-197 10-183 (208)
95 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 136.0 12.4 164 9-180 27-190 (208)
96 3ogk_B Coronatine-insensitive 99.8 1E-20 3.5E-25 169.8 -1.2 72 209-281 402-502 (592)
97 4ay9_X Follicle-stimulating ho 99.8 7.4E-18 2.5E-22 141.6 16.2 218 9-241 29-252 (350)
98 3ogk_B Coronatine-insensitive 99.8 3.5E-20 1.2E-24 166.3 0.6 267 9-281 191-527 (592)
99 1m9s_A Internalin B; cell inva 99.8 1.1E-17 3.7E-22 149.7 14.9 171 31-225 40-211 (605)
100 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.7E-22 135.9 12.9 171 30-224 42-213 (291)
101 1h6t_A Internalin B; cell adhe 99.7 3E-17 1E-21 134.4 13.5 170 9-193 45-214 (291)
102 2v9t_B SLIT homolog 2 protein 99.7 9.4E-17 3.2E-21 126.0 14.7 151 13-168 14-165 (220)
103 3e6j_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 125.9 15.7 150 13-168 22-172 (229)
104 2v9t_B SLIT homolog 2 protein 99.7 2.6E-16 8.7E-21 123.5 16.1 152 37-193 14-166 (220)
105 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 125.6 14.2 136 9-147 39-174 (229)
106 4ezg_A Putative uncharacterize 99.7 5.5E-17 1.9E-21 125.2 11.4 154 30-192 40-194 (197)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-16 8E-21 123.7 15.1 150 13-167 14-165 (220)
108 4ezg_A Putative uncharacterize 99.7 5.3E-17 1.8E-21 125.3 10.7 153 54-224 40-194 (197)
109 1m9s_A Internalin B; cell inva 99.7 9.9E-17 3.4E-21 143.5 13.7 191 35-258 22-212 (605)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-16 8.6E-21 123.6 14.0 155 36-194 13-168 (220)
111 2xot_A Amphoterin-induced prot 99.7 1.4E-16 4.9E-21 134.3 13.4 178 60-257 20-203 (361)
112 2xot_A Amphoterin-induced prot 99.7 1.2E-16 3.9E-21 134.9 12.3 174 13-192 21-202 (361)
113 1xeu_A Internalin C; cellular 99.7 3.4E-17 1.2E-21 132.0 7.2 148 54-224 37-185 (263)
114 2p1m_B Transport inhibitor res 99.7 1E-18 3.5E-23 156.8 -4.4 85 10-94 105-195 (594)
115 2p1m_B Transport inhibitor res 99.7 1.4E-18 4.8E-23 155.9 -4.7 39 242-280 455-494 (594)
116 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.4E-22 151.1 2.6 191 9-221 172-369 (727)
117 1xeu_A Internalin C; cellular 99.6 4.7E-16 1.6E-20 125.4 8.7 166 12-194 21-187 (263)
118 2ell_A Acidic leucine-rich nuc 99.6 5.2E-16 1.8E-20 116.5 8.3 107 9-119 23-132 (168)
119 2ell_A Acidic leucine-rich nuc 99.6 5E-15 1.7E-19 111.1 8.4 130 58-192 24-160 (168)
120 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 111.7 5.1 108 9-119 16-125 (149)
121 1w8a_A SLIT protein; signaling 99.6 2.3E-14 7.8E-19 110.0 11.8 128 13-145 11-139 (192)
122 1dce_A Protein (RAB geranylger 99.6 5.6E-18 1.9E-22 150.6 -10.0 182 31-228 346-550 (567)
123 1dce_A Protein (RAB geranylger 99.6 4.9E-18 1.7E-22 151.0 -10.7 195 55-273 346-566 (567)
124 2wfh_A SLIT homolog 2 protein 99.5 7.5E-14 2.6E-18 107.1 12.6 126 13-145 13-139 (193)
125 1w8a_A SLIT protein; signaling 99.5 7.9E-14 2.7E-18 106.9 12.3 110 84-194 30-141 (192)
126 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 3.9E-19 106.9 6.4 109 34-145 17-126 (149)
127 4b8c_D Glucose-repressible alc 99.5 2.3E-15 7.8E-20 137.7 3.1 183 34-231 173-361 (727)
128 2o6r_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 102.0 13.0 127 12-144 9-136 (177)
129 2o6r_A Variable lymphocyte rec 99.5 4.8E-13 1.6E-17 101.1 12.2 110 9-119 27-136 (177)
130 2wfh_A SLIT homolog 2 protein 99.5 6.5E-13 2.2E-17 101.8 12.8 125 37-167 13-138 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-14 2.9E-18 105.2 7.4 131 30-168 15-153 (176)
132 3sb4_A Hypothetical leucine ri 99.4 2.3E-13 8E-18 113.2 9.0 239 9-274 48-328 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.4 5.2E-13 1.8E-17 100.8 9.1 132 53-191 14-152 (176)
134 1ds9_A Outer arm dynein; leuci 99.4 3E-15 1E-19 115.5 -4.3 135 124-281 40-186 (198)
135 3sb4_A Hypothetical leucine ri 99.4 4E-13 1.4E-17 111.8 8.1 221 33-280 48-310 (329)
136 3g39_A Variable lymphocyte rec 99.4 2.4E-12 8.2E-17 96.6 10.3 105 11-119 10-114 (170)
137 1ds9_A Outer arm dynein; leuci 99.3 2.6E-15 8.7E-20 115.9 -8.2 104 34-144 18-127 (198)
138 2r9u_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 94.2 11.1 102 13-119 15-117 (174)
139 3g39_A Variable lymphocyte rec 99.3 9.4E-12 3.2E-16 93.3 8.9 107 134-258 11-117 (170)
140 4fdw_A Leucine rich hypothetic 99.2 1.6E-09 5.4E-14 92.3 20.9 153 29-191 131-283 (401)
141 4fdw_A Leucine rich hypothetic 99.2 1.1E-09 3.8E-14 93.3 19.9 238 11-278 136-381 (401)
142 3un9_A NLR family member X1; l 99.2 9E-14 3.1E-18 117.4 -6.1 177 82-266 71-262 (372)
143 2r9u_A Variable lymphocyte rec 99.2 1.8E-10 6.1E-15 86.6 11.4 102 37-145 15-118 (174)
144 3un9_A NLR family member X1; l 99.2 1E-13 3.5E-18 117.0 -8.6 193 57-256 71-283 (372)
145 2ra8_A Uncharacterized protein 99.1 6.1E-11 2.1E-15 99.4 5.9 144 127-280 167-320 (362)
146 2ifg_A High affinity nerve gro 99.1 8.3E-10 2.8E-14 92.3 10.3 103 14-120 12-116 (347)
147 2ifg_A High affinity nerve gro 99.0 8.5E-10 2.9E-14 92.2 7.9 103 136-257 12-117 (347)
148 4fs7_A Uncharacterized protein 98.8 6.5E-07 2.2E-11 76.1 18.7 105 10-117 71-195 (394)
149 2ra8_A Uncharacterized protein 98.8 2E-09 6.7E-14 90.3 2.5 139 80-226 169-322 (362)
150 1io0_A Tropomodulin; LRR prote 98.6 4.4E-09 1.5E-13 79.8 -0.9 119 154-280 35-164 (185)
151 4gt6_A Cell surface protein; l 98.6 1.5E-05 5.2E-10 67.6 20.7 101 12-116 66-169 (394)
152 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.7E-10 68.5 15.7 110 27-141 64-194 (394)
153 4gt6_A Cell surface protein; l 98.3 9.5E-05 3.3E-09 62.6 18.8 108 29-141 58-169 (394)
154 1io0_A Tropomodulin; LRR prote 98.1 9.7E-08 3.3E-12 72.3 -3.4 66 155-224 65-136 (185)
155 4h09_A Hypothetical leucine ri 98.0 0.0017 5.9E-08 54.4 20.1 60 207-276 283-342 (379)
156 3rw6_A Nuclear RNA export fact 98.0 3E-06 1E-10 67.6 2.6 83 31-114 167-258 (267)
157 3rw6_A Nuclear RNA export fact 97.9 2.9E-06 1E-10 67.6 2.3 103 32-138 139-257 (267)
158 3e4g_A ATP synthase subunit S, 97.9 1.5E-06 5E-11 64.6 0.2 85 34-119 61-151 (176)
159 3e4g_A ATP synthase subunit S, 97.9 2.1E-06 7.1E-11 63.8 0.4 92 50-143 53-150 (176)
160 4h09_A Hypothetical leucine ri 97.6 0.022 7.7E-07 47.6 20.5 36 242-277 285-320 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 1.2E-05 4E-10 60.9 -0.9 118 154-279 40-169 (197)
162 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.1E-08 44.6 5.1 38 210-256 30-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00017 6E-09 54.4 -1.7 99 171-277 33-136 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0099 3.4E-07 41.7 5.8 55 14-70 12-67 (130)
165 2lz0_A Uncharacterized protein 44.6 39 0.0013 21.8 4.5 40 27-67 13-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-35 Score=245.32 Aligned_cols=257 Identities=25% Similarity=0.391 Sum_probs=229.6
Q ss_pred CCeeecCCC--CceEEEEcCCCcccc--CCCccccCCCCccEEEecC-CcceeeCCccccCCCCCcEEEcCCCcccccCC
Q 039577 1 VGVTCGVPH--RRVTALSLPNLTLGG--TIPPHIGNLSFLVSLTSVA-KSFYGTLPNELWQLQRLRIVDLSSGIIPGSLP 75 (282)
Q Consensus 1 ~~~~~~~~~--~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 75 (282)
+||+|+... +++++|+++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|
T Consensus 39 ~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp TTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred cceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 489998644 899999999999998 8999999999999999995 99998899999999999999999999987777
Q ss_pred CCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCC-CCcEEEecCccccccCCCCc-C
Q 039577 76 DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS-NIQVIILYGNHLSGHLRSSI-Y 153 (282)
Q Consensus 76 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~-~ 153 (282)
. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+ .+..|..+..+. .|+.|++++|.+....+..+ .
T Consensus 119 ~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 119 D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred H-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc-cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 7 789999999999999999988899999999999999999998 445788888887 99999999999987777777 5
Q ss_pred CCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccC
Q 039577 154 LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN 233 (282)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 233 (282)
+. |+.|++++|.+++..|..+..+++|++|++++|.+++..+ .+..++ +|++|++++|.+++.+|..+..
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------KVGLSK-NLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--------GCCCCT-TCCEEECCSSCCEECCCGGGGG
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--------cccccC-CCCEEECcCCcccCcCChHHhc
Confidence 55 9999999999998888889999999999999999975433 244556 9999999999999899988876
Q ss_pred CccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577 234 LSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 234 l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 278 (282)
+ ++|+.|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 267 l--------~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 L--------KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp C--------TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred C--------cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5 67889999999999999986 889999999999997
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-34 Score=266.25 Aligned_cols=268 Identities=30% Similarity=0.413 Sum_probs=217.7
Q ss_pred ceEEEEcCCCccccCCCccccC--CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 11 RVTALSLPNLTLGGTIPPHIGN--LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|. .+..+++|++|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcCCCCCEE
Confidence 5666666666666666655554 66788888888888777888888888888888888888766666 67788888888
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
++.+|.+.+..|..+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+....+.++ .+++|+.|++++|.+
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 8888888877788888888888999988888 55677788888899999999998887777777 788999999999999
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCC-----------------------------------------------
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSG----------------------------------------------- 200 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----------------------------------------------- 200 (282)
++.+|..+..+++|++|++++|.+++.+|....
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 888888888899999999999988877664311
Q ss_pred ----------------CCCCcccccccccceEEeecccceecCCccccCCccCcccc----------------cccccee
Q 039577 201 ----------------VFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN----------------LESLFGL 248 (282)
Q Consensus 201 ----------------~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~----------------l~~l~~L 248 (282)
..|..+..++ .|+.|++++|++++.+|..++.++.|+.|+ +++|+.|
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSB-CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cccccccccccceecccCchhhhccc-cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 1223344455 788899999999888898888888888887 5689999
Q ss_pred eccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
|+++|.++|.+|..+..+++|+++++++|+++|
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999999999999999876
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-32 Score=254.32 Aligned_cols=214 Identities=29% Similarity=0.422 Sum_probs=138.8
Q ss_pred CceEEEEcCCCccccCCCcc-ccCCCCccEEEecCCcceeeCCccccC---------------------------CCCCc
Q 039577 10 RRVTALSLPNLTLGGTIPPH-IGNLSFLVSLTSVAKSFYGTLPNELWQ---------------------------LQRLR 61 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~---------------------------l~~L~ 61 (282)
+++++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+.+ +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 45556666666555555543 555555555555555555555544444 44555
Q ss_pred EEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC
Q 039577 62 IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141 (282)
Q Consensus 62 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (282)
.|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+ .+..|..+..+++|++|++++
T Consensus 398 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp EEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc-cCcCCHHHcCCCCceEEEecC
Confidence 555555555444444 555666666666666666655666666667777777777666 445666666677777777777
Q ss_pred ccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeec
Q 039577 142 NHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS 220 (282)
Q Consensus 142 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~ 220 (282)
|.+....+..+ .+++|+.|++++|.+++.+|..++.+++|++|++++|.+++.+ |..+..++ +|+.|++++
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-------p~~l~~l~-~L~~L~Ls~ 547 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-------PAELGDCR-SLIWLDLNT 547 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC-------CGGGGGCT-TCCEEECCS
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC-------CHHHcCCC-CCCEEECCC
Confidence 77766666555 6777777777777777677777777777777777777776544 44667777 899999998
Q ss_pred ccceecCCccccC
Q 039577 221 CQLSGGIPVGFGN 233 (282)
Q Consensus 221 n~~~~~~~~~~~~ 233 (282)
|.+.+.+|..+..
T Consensus 548 N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 548 NLFNGTIPAAMFK 560 (768)
T ss_dssp SEEESBCCGGGGT
T ss_pred CccCCcCChHHhc
Confidence 8888777765543
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-33 Score=251.06 Aligned_cols=263 Identities=21% Similarity=0.239 Sum_probs=201.3
Q ss_pred CCeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCc-----------------------------------
Q 039577 1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS----------------------------------- 45 (282)
Q Consensus 1 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------------------------- 45 (282)
+||+|+. .++|+.|+++++.+.|.+|++++++++|++|++++|.
T Consensus 73 ~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~ 151 (636)
T 4eco_A 73 PGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151 (636)
T ss_dssp TTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTC
T ss_pred CCeEEcC-CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhc
Confidence 5999987 4899999999999999999999999999999999884
Q ss_pred -------------------------------------------ceeeCCccccCCCCCcEEEcCCCccccc---------
Q 039577 46 -------------------------------------------FYGTLPNELWQLQRLRIVDLSSGIIPGS--------- 73 (282)
Q Consensus 46 -------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------- 73 (282)
+++ +|..+.++++|++|++++|.+.+.
T Consensus 152 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp CCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred cCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 334 788899999999999999999864
Q ss_pred --------CCCCccC--CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCC-CCCccccCC------CCCc
Q 039577 74 --------LPDDTSG--DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAG-LLPSVIFNS------SNIQ 135 (282)
Q Consensus 74 --------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~~~------~~L~ 135 (282)
+|. .+. .+++|++|++++|.+.+.+|..+..+++|++|++++|. + .+ .+|..+..+ ++|+
T Consensus 231 ~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 231 NSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp TSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-CHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-ccccchHHHHhhhccccCCCCC
Confidence 887 677 99999999999999888899999999999999999998 6 44 566666665 8899
Q ss_pred EEEecCccccccCCC--Cc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577 136 VIILYGNHLSGHLRS--SI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212 (282)
Q Consensus 136 ~L~l~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (282)
+|++++|.++ ..+. .+ .+++|+.|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..++ +
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--------~lp~~l~~l~-~ 377 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--------EIPANFCGFT-E 377 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--------ECCTTSEEEC-T
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--------cccHhhhhhc-c
Confidence 9999999888 5555 45 78889999999988887888 7777788888888888776 3344455555 4
Q ss_pred -cceEEeecccceecCCccccCCc--cCcccc-----------------------ccccceeeccCCeeeeecch-hhhc
Q 039577 213 -LENFYASSCQLSGGIPVGFGNLS--NMIKCN-----------------------LESLFGLLLGGDALEGQIPT-CLAN 265 (282)
Q Consensus 213 -L~~L~l~~n~~~~~~~~~~~~l~--~l~~l~-----------------------l~~l~~L~l~~n~~~~~~~~-~~~~ 265 (282)
|++|++++|.++ .+|..+.... +|+.|+ +++|+.|++++|.++ .+|. .+..
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~ 455 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST 455 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc
Confidence 666666666665 5555444332 333332 125666666666666 3343 3444
Q ss_pred cCCCceeeccCccCC
Q 039577 266 LTSLISLNLRSIRLN 280 (282)
Q Consensus 266 l~~L~~l~l~~n~~~ 280 (282)
+++|++|++++|+|+
T Consensus 456 l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 456 GSPLSSINLMGNMLT 470 (636)
T ss_dssp TCCCSEEECCSSCCS
T ss_pred CCCCCEEECCCCCCC
Confidence 666666666666654
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=3.8e-31 Score=230.44 Aligned_cols=139 Identities=18% Similarity=0.132 Sum_probs=111.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeC-CccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTL-PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
++++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..|. .+..+++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCE
Confidence 478999999999998877888999999999999999887555 55688899999999999998754455 7888999999
Q ss_pred EEcccCeecccCCcC--CcCCCCceEEEecCCCCCCCCCCcc-ccCCCCCcEEEecCccccccCC
Q 039577 88 LSFSFNKIRGWIPQK--IGNLTELVELYLDGNNLQAGLLPSV-IFNSSNIQVIILYGNHLSGHLR 149 (282)
Q Consensus 88 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 149 (282)
|++++|.+.+..+.. +..+++|++|++++|.++ ...|.. +..+++|++|++++|.+....+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCCCcccccCh
Confidence 999999887544433 778889999999988883 333443 6778888888888887765444
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=6.3e-31 Score=230.46 Aligned_cols=269 Identities=19% Similarity=0.128 Sum_probs=199.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
+.++++|++++|.+++..+..|.++++|++|++++|.+....|..+.++++|+.|++++|.+. .++...+..+++|++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 678999999999998877888999999999999999999877888999999999999999987 6776578899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 9999998876777888999999999999987 33445567788899999999988876554444 678888888888887
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCC----------------CCCCC-CcccccccccceEEeecccceecCCcc
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNT----------------SGVFP-NSIGNLSTSLENFYASSCQLSGGIPVG 230 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------------~~~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~ 230 (282)
.+..+..+..+++|++|++++|.+.+.++.. ...+| ..+..++ +|++|++++|.+++..+..
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTS
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhh
Confidence 7555556667777777777776655443321 11222 1344455 6777777777666555555
Q ss_pred ccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 231 FGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 231 ~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
+..+++|+.|+ +++|+.|++++|.+++..+..|..+++|+.+++++|.++
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66665555554 345666666666666444445566666666666666554
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.2e-31 Score=247.49 Aligned_cols=263 Identities=20% Similarity=0.203 Sum_probs=200.2
Q ss_pred CCeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEe-cCCcceee------------------------------
Q 039577 1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTS-VAKSFYGT------------------------------ 49 (282)
Q Consensus 1 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~------------------------------ 49 (282)
+||+|+. .++|++|+|+++.+.|.+|++++++++|++|+| ++|.+.+.
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 4899998 689999999999999999999999999999999 66643222
Q ss_pred ----------------------------------------------CCccccCCCCCcEEEcCCCcccc-----------
Q 039577 50 ----------------------------------------------LPNELWQLQRLRIVDLSSGIIPG----------- 72 (282)
Q Consensus 50 ----------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~----------- 72 (282)
+|..+.++++|+.|++++|.+.+
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 78888999999999999999986
Q ss_pred ------cCCCCccC--CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCC-CCCccccCC-------CCCc
Q 039577 73 ------SLPDDTSG--DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAG-LLPSVIFNS-------SNIQ 135 (282)
Q Consensus 73 ------~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~~~-------~~L~ 135 (282)
.+|. .++ .+++|++|++++|.+.+.+|..+..+++|++|++++|. + .+ .+|..+..+ ++|+
T Consensus 474 ~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-sg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 474 SDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-SAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp SHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-CHHHHHHHHHHHHHCTTTTTTCC
T ss_pred cccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-ccccchHHHHhhhhcccccCCcc
Confidence 2787 555 99999999999999888889889999999999999997 6 33 455545444 4888
Q ss_pred EEEecCccccccCCC--Cc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577 136 VIILYGNHLSGHLRS--SI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212 (282)
Q Consensus 136 ~L~l~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (282)
.|++++|.+. ..+. .+ .+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..++ +
T Consensus 552 ~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--------~lp~~l~~l~-~ 619 (876)
T 4ecn_A 552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--------EIPEDFCAFT-D 619 (876)
T ss_dssp EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--------CCCTTSCEEC-T
T ss_pred EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc--------cchHHHhhcc-c
Confidence 8888888888 5555 45 7888888888888887 777 6777888888888888776 3444556665 5
Q ss_pred -cceEEeecccceecCCccccCCcc--Ccccc---------------------ccccceeeccCCeeeeecchhh-hccC
Q 039577 213 -LENFYASSCQLSGGIPVGFGNLSN--MIKCN---------------------LESLFGLLLGGDALEGQIPTCL-ANLT 267 (282)
Q Consensus 213 -L~~L~l~~n~~~~~~~~~~~~l~~--l~~l~---------------------l~~l~~L~l~~n~~~~~~~~~~-~~l~ 267 (282)
|++|++++|.++ .+|..+..+.. |+.|+ .++|+.|++++|.++ .+|..+ ..++
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~ 697 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS 697 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC
T ss_pred cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCC
Confidence 777777777776 56655544332 33333 125667777777776 455443 3667
Q ss_pred CCceeeccCccCC
Q 039577 268 SLISLNLRSIRLN 280 (282)
Q Consensus 268 ~L~~l~l~~n~~~ 280 (282)
+|+.|++++|+|+
T Consensus 698 ~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 698 PISTIILSNNLMT 710 (876)
T ss_dssp CCSEEECCSCCCS
T ss_pred CCCEEECCCCcCC
Confidence 7777777777665
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=222.86 Aligned_cols=239 Identities=21% Similarity=0.165 Sum_probs=182.8
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+.+..|.+|.++++|++|++++|.+....+..+.++++|+.|++++|.+.+..+. .+..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEE
Confidence 46899999999999887788899999999999999988754444577899999999999998744444 78889999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCC-----------
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPN----------- 156 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~----------- 156 (282)
++.+|.+....+..+..+++|++|++++|.++. ..+..+..+++|+.|++.+|.+....+..+ .+++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 999998886667778888999999999988733 233346677777888777777665444333 4444
Q ss_pred -------------ccEEEeecCcceeecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccc
Q 039577 157 -------------LENLFLWQNNLCGIVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ 222 (282)
Q Consensus 157 -------------L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 222 (282)
|+.|++++|.++ .+| ..+..+++|++|++++|.+++..+. .+..++ +|++|++++|.
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~-~L~~L~L~~n~ 283 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGS-------MLHELL-RLQEIQLVGGQ 283 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTT-------SCTTCT-TCCEEECCSSC
T ss_pred ccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChh-------hccccc-cCCEEECCCCc
Confidence 455555555554 333 3566778888888888887754332 455666 89999999999
Q ss_pred ceecCCccccCCccCcccc----------------ccccceeeccCCeeeee
Q 039577 223 LSGGIPVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQ 258 (282)
Q Consensus 223 ~~~~~~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~ 258 (282)
+.+..|..+..+++|+.|+ +++|+.|++++|.+...
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9888788888888888887 46799999999998854
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.9e-30 Score=212.29 Aligned_cols=228 Identities=23% Similarity=0.320 Sum_probs=202.0
Q ss_pred CCccEEEecCCccee--eCCccccCCCCCcEEEcCC-CcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577 34 SFLVSLTSVAKSFYG--TLPNELWQLQRLRIVDLSS-GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (282)
.+++.|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|. .+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 589999999999998 8999999999999999995 888877887 789999999999999999888899999999999
Q ss_pred EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCC-CccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLP-NLENLFLWQNNLCGIVPDSICNASEVTILELSK 188 (282)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (282)
+|++++|.+ .+..|..+..+++|++|++++|.+....+..+ .++ +|+.|++++|.+++..|..+..+. |++|++++
T Consensus 129 ~L~Ls~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEE-ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCcc-CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 999999998 45678889999999999999999987777666 666 999999999999988998888886 99999999
Q ss_pred cccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCC
Q 039577 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTS 268 (282)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~ 268 (282)
|.+++.. |..+..++ +|++|++++|.+++..|. +.. +++|++|++++|.+++.+|..+..+++
T Consensus 207 N~l~~~~-------~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~--------l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 207 NMLEGDA-------SVLFGSDK-NTQKIHLAKNSLAFDLGK-VGL--------SKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp SEEEECC-------GGGCCTTS-CCSEEECCSSEECCBGGG-CCC--------CTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred CcccCcC-------CHHHhcCC-CCCEEECCCCceeeecCc-ccc--------cCCCCEEECcCCcccCcCChHHhcCcC
Confidence 9998543 34566677 999999999999865554 443 378999999999999999999999999
Q ss_pred CceeeccCccCCC
Q 039577 269 LISLNLRSIRLNS 281 (282)
Q Consensus 269 L~~l~l~~n~~~~ 281 (282)
|+++++++|+++|
T Consensus 270 L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 270 LHSLNVSFNNLCG 282 (313)
T ss_dssp CCEEECCSSEEEE
T ss_pred CCEEECcCCcccc
Confidence 9999999999875
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3e-29 Score=225.96 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=108.6
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..|.+|.++++|++|++++|.+....|..+.++++|++|++++|.+.+..|. .+..+++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEe
Confidence 67899999999999877788899999999999999999887788899999999999999998754455 78889999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 147 (282)
++++|.+....+..+..+++|++|++++|.++....+.. ..+++|+.|++++|.+...
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEE
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccCccccc
Confidence 999988885445667888888888888888743223433 3366677777766665543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.8e-29 Score=227.40 Aligned_cols=262 Identities=23% Similarity=0.172 Sum_probs=133.6
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc-------------------
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP------------------- 71 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------------- 71 (282)
++++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4555666555555444444555555555555555554 44545555555555555555544
Q ss_pred -----ccCCCCccCCCCCccEEEcccCeecccC--CcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccc
Q 039577 72 -----GSLPDDTSGDCIMLRRLSFSFNKIRGWI--PQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144 (282)
Q Consensus 72 -----~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 144 (282)
+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-EEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-CcCCHHHhcCCccCCeEECCCCcC
Confidence 3333333444455555555554444322 33444455555555555544 222333444455555555555555
Q ss_pred cccCCCC-c-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccc
Q 039577 145 SGHLRSS-I-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ 222 (282)
Q Consensus 145 ~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 222 (282)
....+.. + .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+... ..+..+..++ +|++|++++|.
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~l~-~L~~L~Ls~n~ 487 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----QKTNSLQTLG-RLEILVLSFCD 487 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----CSSCGGGGCT-TCCEEECTTSC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----ccchhhccCC-CccEEECCCCc
Confidence 4333222 2 45555555555555554444445555556666666555543110 0112344555 66677777666
Q ss_pred ceecCCccccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 223 LSGGIPVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 223 ~~~~~~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
+++..|..+..+++|+.|+ +++| .|++++|.+++..|..+..+++|+.+++++|.++
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 6655566666655555444 2334 5555555555555555555556666666665554
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.8e-28 Score=219.67 Aligned_cols=136 Identities=19% Similarity=0.096 Sum_probs=105.5
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|. .+..+++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEE
Confidence 57889999999988877777888899999999999888876777788889999999998888743344 77888888888
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS 145 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 145 (282)
++++|.+....+..++.+++|++|++++|.++...+|..+.++++|++|++++|.+.
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 888888775444667778888888888887743345667777777777777766544
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=231.09 Aligned_cols=271 Identities=20% Similarity=0.138 Sum_probs=191.3
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeC-CccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTL-PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
++++++|++++|.+++..+.+|.++++|++|++++|.....+ |..+.++++|++|++++|.+.+..|. .+..+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCE
Confidence 689999999999998888889999999999999999766666 67889999999999999999755555 8899999999
Q ss_pred EEcccCeecccCCcC--CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CC--CCccEEEe
Q 039577 88 LSFSFNKIRGWIPQK--IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YL--PNLENLFL 162 (282)
Q Consensus 88 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~--~~L~~L~l 162 (282)
|++++|.+.+..+.. +..+++|++|++++|.++....+..+.++++|++|++++|.+....+..+ .+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999988655554 88999999999999998543344578899999999999998876555444 23 55666666
Q ss_pred ecCcceeeccchhhCCCC------CcEEeccCcccceecCCCC-------------------------------------
Q 039577 163 WQNNLCGIVPDSICNASE------VTILELSKNLFSCLIPNTS------------------------------------- 199 (282)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~------------------------------------- 199 (282)
++|.+.+..|..+..+.+ |++|++++|.+++..+...
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 666555444433333222 5555555553332211100
Q ss_pred ------------------CCCCCcccccccccceEEeecccceecCCccccCCccCcccc----------------cccc
Q 039577 200 ------------------GVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN----------------LESL 245 (282)
Q Consensus 200 ------------------~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~----------------l~~l 245 (282)
...+..+..++ +|++|++++|.+.+..|..+..+++|+.|+ +++|
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 01122344455 677777777777666566666666666664 4567
Q ss_pred ceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 246 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+.|++++|.+.+..+..|..+++|+.|++++|.+++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 777777777765555566777777777777776654
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.1e-30 Score=232.46 Aligned_cols=264 Identities=17% Similarity=0.198 Sum_probs=184.4
Q ss_pred CCceEEEEcCCCccccC-----------------CCcccc--CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc
Q 039577 9 HRRVTALSLPNLTLGGT-----------------IPPHIG--NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI 69 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 69 (282)
.+++++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46899999999999886 898888 99999999999999998899999999999999999998
Q ss_pred -ccc-cCCCCccCCC------CCccEEEcccCeecccCCc--CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEe
Q 039577 70 -IPG-SLPDDTSGDC------IMLRRLSFSFNKIRGWIPQ--KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL 139 (282)
Q Consensus 70 -~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 139 (282)
+.+ .+|. .+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+ .+.+| .+..+++|+.|++
T Consensus 285 ~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l-~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 285 GISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL-EGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC-EEECC-CCEEEEEESEEEC
T ss_pred CCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC-ccchh-hhCCCCCCCEEEC
Confidence 876 5665 44444 88999999998888 6787 788888999999998887 33466 6777788888888
Q ss_pred cCccccccCCCCc-CCCC-ccEEEeecCcceeeccchhhCCC--CCcEEeccCcccceecCCCCCCCCCcccccccccce
Q 039577 140 YGNHLSGHLRSSI-YLPN-LENLFLWQNNLCGIVPDSICNAS--EVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLEN 215 (282)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 215 (282)
++|.+. ..+..+ .+++ |+.|++++|.++ .+|..+.... +|++|++++|.+.+..|............++ +|++
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~ 437 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSS 437 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCE
Confidence 888887 444445 6777 888888888887 7776665543 7888888888877655442210000111233 4555
Q ss_pred EEeecccceecCCccc-cCCccCccccc-----------------------cccceeeccCCeeeeecchhhh--ccCCC
Q 039577 216 FYASSCQLSGGIPVGF-GNLSNMIKCNL-----------------------ESLFGLLLGGDALEGQIPTCLA--NLTSL 269 (282)
Q Consensus 216 L~l~~n~~~~~~~~~~-~~l~~l~~l~l-----------------------~~l~~L~l~~n~~~~~~~~~~~--~l~~L 269 (282)
|++++|.++ .+|..+ ..+++|+.|++ ++|++|++++|.++ .+|..+. .+++|
T Consensus 438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 555555554 333322 23444444430 15666666666666 4555554 56666
Q ss_pred ceeeccCccCCC
Q 039577 270 ISLNLRSIRLNS 281 (282)
Q Consensus 270 ~~l~l~~n~~~~ 281 (282)
++|++++|+|++
T Consensus 516 ~~L~Ls~N~l~~ 527 (636)
T 4eco_A 516 VGIDLSYNSFSK 527 (636)
T ss_dssp CEEECCSSCCSS
T ss_pred CEEECCCCCCCC
Confidence 666666666543
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.4e-28 Score=212.74 Aligned_cols=263 Identities=19% Similarity=0.191 Sum_probs=192.1
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+.++..+++++ .+|. +. ++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35677777664 4565 32 79999999999999877889999999999999999987677666889999999999999
Q ss_pred CeecccCCcCCcCCCCceEEEecCCCCCCCCCCc--cccCCCCCcEEEecCccccccCCCC-c-CCCCccEEEeecCcce
Q 039577 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS--VIFNSSNIQVIILYGNHLSGHLRSS-I-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~ 168 (282)
|.+....|..+..+++|++|++++|.+ .+..+. .+..+++|++|++++|.+....+.. + .+++|+.|++++|.++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999876788899999999999999988 332232 3778899999999999998776665 4 7899999999999887
Q ss_pred eeccchhhC----------------------------------CCCCcEEeccCcccceecCCC----------------
Q 039577 169 GIVPDSICN----------------------------------ASEVTILELSKNLFSCLIPNT---------------- 198 (282)
Q Consensus 169 ~~~~~~l~~----------------------------------~~~L~~L~l~~~~~~~~~~~~---------------- 198 (282)
+..+..+.. +++|++|++++|.+.+..+..
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 544433322 245667777766554311100
Q ss_pred ----------------------------------------CCCCCCcccccccccceEEeecccceecCCccccCCccCc
Q 039577 199 ----------------------------------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI 238 (282)
Q Consensus 199 ----------------------------------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 238 (282)
.+..|..+..++ +|++|++++|.+.+..|..+..+++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCC
Confidence 011233455555 677777777777666566666666666
Q ss_pred ccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 239 KCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 239 ~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.|+ +++|++|++++|.+++..|..|..+++|++|++++|+|++
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 665 4566677777777766666666666777777777666654
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.7e-28 Score=223.79 Aligned_cols=262 Identities=21% Similarity=0.223 Sum_probs=195.2
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 578999999999998766667889999999999999988777777888999999999999886 6776568889999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc---CCCCccEEEeecC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI---YLPNLENLFLWQN 165 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~ 165 (282)
++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999888754456788889999999998887 44445566778888888888877665443322 3456666666666
Q ss_pred cceeecc---------------------------------------------------chhhCCC--CCcEEeccCcccc
Q 039577 166 NLCGIVP---------------------------------------------------DSICNAS--EVTILELSKNLFS 192 (282)
Q Consensus 166 ~~~~~~~---------------------------------------------------~~l~~~~--~L~~L~l~~~~~~ 192 (282)
.+++..| ..+..++ +|++|++++|.++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 5543322 2222222 2555555555554
Q ss_pred eecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccc-------------------------cccce
Q 039577 193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL-------------------------ESLFG 247 (282)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l-------------------------~~l~~ 247 (282)
+.. |.++..++ +|++|++++|.+.+..|..+..+++|+.+++ ++|++
T Consensus 262 ~~~-------~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 262 VVG-------NDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp EEC-------TTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ccC-------cccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 332 23455666 8899999988888777777877777776643 57889
Q ss_pred eeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
|++++|.+++..+..|..+++|+++++++|.++
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 999999999877788889999999998888654
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=6.2e-28 Score=206.16 Aligned_cols=253 Identities=18% Similarity=0.159 Sum_probs=141.4
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
.+++.++++++.+...-+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEE
Confidence 45666666666554322223455666666666666665544455666666666666666665 33333556666666666
Q ss_pred cccCeecccCCcC-CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCc-----------
Q 039577 90 FSFNKIRGWIPQK-IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNL----------- 157 (282)
Q Consensus 90 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L----------- 157 (282)
+++|.+. .+|.. +..+++|++|++++|.+ ....+..+..+++|++|++++|.+...... .+++|
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGG--GCTTCSEEECCSSCCS
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccc--cccccceeeccccccc
Confidence 6666666 33433 45666666666666665 222333455566666666666655432111 23333
Q ss_pred --------cEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc
Q 039577 158 --------ENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV 229 (282)
Q Consensus 158 --------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~ 229 (282)
++|++++|.+. .+|.. ..++|++|++++|.+++. .++..++ +|++|++++|.+++..|.
T Consensus 200 ~~~~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~---------~~l~~l~-~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDT---------AWLLNYP-GLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp EEECCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCCC---------GGGGGCT-TCSEEECCSSCCCEEESG
T ss_pred ccCCCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCccc---------HHHcCCC-CccEEECCCCcCCCcChh
Confidence 33333333332 11211 123455555555544421 1344444 666666666666555555
Q ss_pred cccCCccCcccc---------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 230 GFGNLSNMIKCN---------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 230 ~~~~l~~l~~l~---------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+..+++|+.|+ +++|++|++++|.++ .+|..+..+++|+++++++|.|++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 555555555554 457777888888777 566667777777777777777764
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.7e-29 Score=207.17 Aligned_cols=233 Identities=21% Similarity=0.213 Sum_probs=133.8
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|. .+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcCcCCCEEE
Confidence 45555666555554 45555555555666666555555 45555555555555555555554 4444 455555555555
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
+++|...+.+|..+.. . ..+..+..+++|++|++++|.+. ..+..+ .+++|+.|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh------c----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 5554444344443322 0 00011223556666666666655 333334 5666666666666665
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L 248 (282)
.+|..+..+++|++|++++|.+.+.+ |..+..++ +|++|++++|.+.+.+|..+..+ ++|++|
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~-------p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l--------~~L~~L 282 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNY-------PPIFGGRA-PLKRLILKDCSNLLTLPLDIHRL--------TQLEKL 282 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBC-------CCCTTCCC-CCCEEECTTCTTCCBCCTTGGGC--------TTCCEE
T ss_pred -cCchhhccCCCCCEEECcCCcchhhh-------HHHhcCCC-CCCEEECCCCCchhhcchhhhcC--------CCCCEE
Confidence 45555666677777777776665433 33445555 67777777776666666665553 456667
Q ss_pred eccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777677777777777777777665543
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-27 Score=199.10 Aligned_cols=213 Identities=19% Similarity=0.229 Sum_probs=157.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++.++.|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|... .++|++|
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL 126 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEE
Confidence 568899999999988766667889999999999999998767888889999999999999886 677622 2688888
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCC-CCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 167 (282)
++++|.+....+..+..+++|++|++++|.++. +..+..+..+++|+.|++++|.+...+. .+ .++|++|++++|.+
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~-~~~L~~L~l~~n~l 204 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GL-PPSLTELHLDGNKI 204 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC-CTTCSEEECTTSCC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cc-cccCCEEECCCCcC
Confidence 888888775444457778888888888887732 1345567777888888888887764332 22 36788888888877
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCcc
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSN 236 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 236 (282)
++..+..+..+++|++|++++|.+++..+. .+..++ +|++|++++|.++ .+|.++..+++
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNG-------SLANTP-HLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTT-------TGGGST-TCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChh-------hccCCC-CCCEEECCCCcCc-cCChhhccCCC
Confidence 755566777777888888888877654332 344555 7777777777776 66666655543
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.4e-28 Score=201.70 Aligned_cols=211 Identities=24% Similarity=0.272 Sum_probs=161.4
Q ss_pred CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEE
Q 039577 33 LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112 (282)
Q Consensus 33 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (282)
.++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356777777777766 56666667777777777777775 6665 5666777777777777766 566666677777777
Q ss_pred EecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191 (282)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (282)
++++|.. .+.+|..+.. .. ....+ .+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 156 ~L~~n~~-~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPE-LTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETT-CCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCC-ccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 7776554 3334433221 00 01112 4899999999999998 8899999999999999999998
Q ss_pred ceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCce
Q 039577 192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLIS 271 (282)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~ 271 (282)
+ .+|..+..++ +|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+.+|..+..+++|++
T Consensus 219 ~--------~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l--------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 219 S--------ALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGR--------APLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp C--------CCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCC--------CCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred C--------cCchhhccCC-CCCEEECcCCcchhhhHHHhcCC--------CCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 7 4555777888 99999999999998999888775 67889999999999999999999999999
Q ss_pred eeccCccCCC
Q 039577 272 LNLRSIRLNS 281 (282)
Q Consensus 272 l~l~~n~~~~ 281 (282)
|++++|.+.+
T Consensus 282 L~L~~n~~~~ 291 (328)
T 4fcg_A 282 LDLRGCVNLS 291 (328)
T ss_dssp EECTTCTTCC
T ss_pred EeCCCCCchh
Confidence 9999998876
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1e-28 Score=228.03 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=99.3
Q ss_pred CCceEEEEcCCCcccc-----------------CCCcccc--CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc
Q 039577 9 HRRVTALSLPNLTLGG-----------------TIPPHIG--NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI 69 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 69 (282)
-+++++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 3577888888888877 3777766 78888888888888777778777788888888888876
Q ss_pred -ccc-cCCCC------ccCCCCCccEEEcccCeecccCCc--CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEe
Q 039577 70 -IPG-SLPDD------TSGDCIMLRRLSFSFNKIRGWIPQ--KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL 139 (282)
Q Consensus 70 -~~~-~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 139 (282)
+.+ .+|.. .+..+++|++|++++|.+. .+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEEC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEEC
Confidence 654 44430 1223346666666666666 4555 5666666666666666653 344 4555555555555
Q ss_pred cCccccccCCCCc-CCCC-ccEEEeecCcceeeccc
Q 039577 140 YGNHLSGHLRSSI-YLPN-LENLFLWQNNLCGIVPD 173 (282)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~ 173 (282)
++|.+. ..+..+ .+++ |+.|++++|.++ .+|.
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 555555 333333 4444 555555555544 4443
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.1e-27 Score=215.69 Aligned_cols=110 Identities=22% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
-+++++|++++|.+++..|.+|.++++|++|++++|.+.+..|..+.++++|++|++++|.+. .++...++.+++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEE
Confidence 357777777777777666667777777777777777777655667777777777777777775 3443356667777777
Q ss_pred EcccCeecc-cCCcCCcCCCCceEEEecCCCC
Q 039577 89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 119 (282)
++++|.+.. .+|..+..+++|++|++++|.+
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 777776653 3466666666666666666654
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.6e-27 Score=214.22 Aligned_cols=254 Identities=17% Similarity=0.148 Sum_probs=146.1
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
.+++.++++++.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEE
Confidence 44566666666554333334455666666666666666555556666666666666666665 33333556666666666
Q ss_pred cccCeecccCCcC-CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 90 FSFNKIRGWIPQK-IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 90 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
+++|.+.. +|.. +..+++|++|++++|.+ ....+..+..+++|++|++++|.+...... .+++|+.+++++|.+.
T Consensus 130 L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCS
T ss_pred eeCCCCCC-CCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCccc
Confidence 66666663 3333 45666666666666665 333344455666666666666665533211 2333444433333332
Q ss_pred e------------------eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcc
Q 039577 169 G------------------IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230 (282)
Q Consensus 169 ~------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 230 (282)
+ .++.. ..++|+.|++++|.+++ +.++..++ +|+.|++++|.+.+..|..
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~---------~~~l~~l~-~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD---------TAWLLNYP-GLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC---------CGGGGGCT-TCSEEECCSSCCCEEESGG
T ss_pred cccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC---------ChhhccCC-CCCEEECCCCccCCCCHHH
Confidence 1 11111 12345555555554442 12344555 6666666666666555666
Q ss_pred ccCCccCcccc---------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 231 FGNLSNMIKCN---------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 231 ~~~l~~l~~l~---------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+..+++|+.|+ +++|+.|++++|.++ .+|..+..+++|+.|++++|.|++
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 66666666554 467888888888887 677777888888888888887765
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.6e-27 Score=217.39 Aligned_cols=269 Identities=22% Similarity=0.170 Sum_probs=189.4
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|++++|.+.+..|.++.++++|++|++++|.+....+..+.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEE
Confidence 57888888888887777777778888888888888777433335777888888888888876 45544677788888888
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCcccc--CCCCCcEEEecCcc------------------------
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF--NSSNIQVIILYGNH------------------------ 143 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~------------------------ 143 (282)
+++|.+.+..+..+..+++|++|++++|.++. ..+..+. ..++|+.|++++|.
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 88887776556667777777777777776522 2222111 22444444444443
Q ss_pred ---------------------------ccccCCCCc-CC--CCccEEEeecCcceeeccchhhCCCCCcEEeccCcccce
Q 039577 144 ---------------------------LSGHLRSSI-YL--PNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193 (282)
Q Consensus 144 ---------------------------~~~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 193 (282)
+....+..+ .+ ++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 333333333 22 348888888888876666777888889999998888877
Q ss_pred ecCCCCC----------------------CCCC----cccccccccceEEeecccceecCCccccCCccCccccc-----
Q 039577 194 LIPNTSG----------------------VFPN----SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL----- 242 (282)
Q Consensus 194 ~~~~~~~----------------------~l~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l----- 242 (282)
..+.... .+|. .+..++ +|++|++++|.+.+..+..+..+++|+.+++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 6554321 1221 455566 8999999999998777778888888888764
Q ss_pred ---------------cccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 243 ---------------ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 243 ---------------~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
++|+.|++++|.+++..|..|..+++|+.+++++|.+++
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 367888888888887777888888888888888887753
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.2e-27 Score=198.54 Aligned_cols=254 Identities=18% Similarity=0.236 Sum_probs=155.5
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
+++++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|...+ ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence 467899999999887666778889999999999999988777888888999999999999886 6776222 788888
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCC-CCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 167 (282)
++++|.+....+..+..+++|++|++++|.++. +..+..+..+ +|+.|++++|.+...+. .+ .++|++|++++|.+
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~-~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL-PETLNELHLDHNKI 205 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS-CSSCSCCBCCSSCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc-cCCCCEEECCCCcC
Confidence 888888875334457788888888888887632 1233344444 55555555555543221 11 24455555555555
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc------
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------ 241 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------ 241 (282)
++..+..+..+++|++|++++|.+++..+ ..+..++ +|++|++++|.++ .+|.++..+++|+.++
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIEN-------GSLSFLP-TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCT-------TGGGGCT-TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCCh-------hHhhCCC-CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 43333344445555555555554442211 1233333 4445555544444 3444444433322222
Q ss_pred ----------------ccccceeeccCCeee--eecchhhhccCCCceeeccCcc
Q 039577 242 ----------------LESLFGLLLGGDALE--GQIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 242 ----------------l~~l~~L~l~~n~~~--~~~~~~~~~l~~L~~l~l~~n~ 278 (282)
...++.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 244667777777665 3455667777777777777764
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-27 Score=213.41 Aligned_cols=108 Identities=26% Similarity=0.228 Sum_probs=92.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+.+..+.++..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 578999999999998766778999999999999999998777888889999999999999987 77763 78899999
Q ss_pred EcccCeecc-cCCcCCcCCCCceEEEecCCCCC
Q 039577 89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQ 120 (282)
Q Consensus 89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 120 (282)
++++|.+.. ..|..+..+++|++|++++|.++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 999998884 23467888899999999988873
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=213.23 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=102.2
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+.+..|.++..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 478999999999998766678899999999999999998777888999999999999999987 67762 78999999
Q ss_pred EcccCeecc-cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC--cEEEecCccc
Q 039577 89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI--QVIILYGNHL 144 (282)
Q Consensus 89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 144 (282)
++++|.+.+ ..|..++.+++|++|++++|.++. ..+..+++| +.|++++|.+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 999999885 356788889999999998887732 223344444 5555555444
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9e-28 Score=198.60 Aligned_cols=229 Identities=19% Similarity=0.162 Sum_probs=103.3
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceee--CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
+++++|++++|.++...+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. .++. .+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~-~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEE-EEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChh-hcCCCCCCCE
Confidence 3455555555554422222344555555555555544321 1333344555555555555543 3333 3444555555
Q ss_pred EEcccCeecccCC-cCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc-cCCCCc-CCCCccEEEeec
Q 039577 88 LSFSFNKIRGWIP-QKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG-HLRSSI-YLPNLENLFLWQ 164 (282)
Q Consensus 88 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~ 164 (282)
|++++|.+....+ ..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+.. ..+..+ .+++|+.|++++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 5555555442211 2344455555555555544 22233334444555555555554443 223333 445555555555
Q ss_pred CcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccc
Q 039577 165 NNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES 244 (282)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~ 244 (282)
|.+++..|..+..+++|++|++++|.+++..+ ..+..++ +|+.|++++|.+++..|..+..++ ++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~-------~~ 249 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-------FPYKCLN-SLQVLDYSLNHIMTSKKQELQHFP-------SS 249 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-------GGGTTCT-TCCEEECTTSCCCBCSSSSCCCCC-------TT
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccCh-------hhccCcc-cCCEeECCCCCCcccCHHHHHhhh-------cc
Confidence 55543334444445555555555554442211 1223333 455555555555444444443321 23
Q ss_pred cceeeccCCeee
Q 039577 245 LFGLLLGGDALE 256 (282)
Q Consensus 245 l~~L~l~~n~~~ 256 (282)
|+.|++++|.++
T Consensus 250 L~~L~L~~N~~~ 261 (306)
T 2z66_A 250 LAFLNLTQNDFA 261 (306)
T ss_dssp CCEEECTTCCEE
T ss_pred CCEEEccCCCee
Confidence 445555555554
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=7.8e-27 Score=195.00 Aligned_cols=251 Identities=16% Similarity=0.177 Sum_probs=204.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+. ++|+.|++++|.+. .++...+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEE
Confidence 578999999999998877889999999999999999987 5676554 89999999999997 5554468899999999
Q ss_pred EcccCeecc--cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecC
Q 039577 89 SFSFNKIRG--WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQN 165 (282)
Q Consensus 89 ~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~ 165 (282)
++.+|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+....+..+ .+++|+.|++++|
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 999998863 456678889999999999999854 665443 899999999999987777666 8899999999999
Q ss_pred cceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccc
Q 039577 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESL 245 (282)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l 245 (282)
.+++..+..+..+++|++|++++|.++ .+|.++..++ +|++|++++|.+++..+..+....... ....+
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~lp~~l~~l~-~L~~L~l~~N~i~~~~~~~f~~~~~~~--~~~~l 295 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV--------KVPGGLADHK-YIQVVYLHNNNISAIGSNDFCPPGYNT--KKASY 295 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS--------SCCTTTTTCS-SCCEEECCSSCCCCCCTTSSSCSSCCT--TSCCC
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc--------cCChhhccCC-CcCEEECCCCcCCccChhhcCCccccc--ccccc
Confidence 998666667889999999999999887 5566777787 999999999999855555554332111 13678
Q ss_pred ceeeccCCeeee--ecchhhhccCCCceeeccCcc
Q 039577 246 FGLLLGGDALEG--QIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 246 ~~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~ 278 (282)
+.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 899999998863 345788889999999999985
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.4e-27 Score=212.65 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=127.7
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..|.++..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEE
Confidence 468999999999998877888999999999999999999877788999999999999999997 4554368899999999
Q ss_pred EcccCeecc-cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577 89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN 166 (282)
Q Consensus 89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 166 (282)
++++|.+.. ..+..+..+++|++|++++|.......+..+..+++|++|++++|.+....+..+ .+++|+.|+++.|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999874 2456788999999999999974232223567888999999999998877666555 55555555555544
Q ss_pred c
Q 039577 167 L 167 (282)
Q Consensus 167 ~ 167 (282)
.
T Consensus 184 ~ 184 (549)
T 2z81_A 184 S 184 (549)
T ss_dssp S
T ss_pred c
Confidence 3
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.5e-27 Score=195.26 Aligned_cols=242 Identities=20% Similarity=0.213 Sum_probs=192.3
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
+++.++++++.+. .+|..+. ++|++|++++|.+....+..+.++++|+.|++++|.+.+..+. .+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 6889999999886 5776553 7999999999999876677899999999999999999744444 7889999999999
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc--cCCCCc-CCCCccEEEeecCcc
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG--HLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
++|.+. .+|..+. ++|++|++++|.++ ...+..+..+++|+.|++++|.+.. ..+..+ .+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999988 5676654 89999999999984 3334458889999999999999863 444444 44 899999999999
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
+ .+|..+ .++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++
T Consensus 185 ~-~l~~~~--~~~L~~L~l~~n~i~~~~~-------~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~ 245 (332)
T 2ft3_A 185 T-GIPKDL--PETLNELHLDHNKIQAIEL-------EDLLRYS-KLYRLGLGHNQIRMIENGSLSFL--------PTLRE 245 (332)
T ss_dssp S-SCCSSS--CSSCSCCBCCSSCCCCCCT-------TSSTTCT-TCSCCBCCSSCCCCCCTTGGGGC--------TTCCE
T ss_pred C-ccCccc--cCCCCEEECCCCcCCccCH-------HHhcCCC-CCCEEECCCCcCCcCChhHhhCC--------CCCCE
Confidence 8 677654 3799999999999884433 3566677 99999999999986666667665 55667
Q ss_pred eeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
|++++|.++ .+|..+..+++|+.+++++|+|++
T Consensus 246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp EECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred EECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 777777777 667777777777777777777654
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=200.80 Aligned_cols=255 Identities=16% Similarity=0.146 Sum_probs=156.4
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 46667777777665544445666677777777776666555555666677777777776665 44443456666777777
Q ss_pred cccCeecccCCc--CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577 90 FSFNKIRGWIPQ--KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN 166 (282)
Q Consensus 90 l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 166 (282)
+++|.+. .++. .+..+++|++|++++|.......+..+..+++|++|++++|.+....+..+ .+++|++|++++|.
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 7766666 3443 456666777777766632122233445566667777777666665555555 56667777777666
Q ss_pred ceeeccch-hhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee----cCCccccCCccCcccc
Q 039577 167 LCGIVPDS-ICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG----GIPVGFGNLSNMIKCN 241 (282)
Q Consensus 167 ~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~l~~l~ 241 (282)
+. .+|.. +..+++|++|++++|.+++..+. .++. ..... .++.++++++.+.+ .+|..+..
T Consensus 210 l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~-~~~~~-~l~~l~L~~~~l~~~~l~~l~~~l~~-------- 275 (353)
T 2z80_A 210 HI-LLLEIFVDVTSSVECLELRDTDLDTFHFS---ELST-GETNS-LIKKFTFRNVKITDESLFQVMKLLNQ-------- 275 (353)
T ss_dssp ST-THHHHHHHHTTTEEEEEEESCBCTTCCCC----------CCC-CCCEEEEESCBCCHHHHHHHHHHHHT--------
T ss_pred cc-cchhhhhhhcccccEEECCCCcccccccc---cccc-ccccc-hhhccccccccccCcchhhhHHHHhc--------
Confidence 64 33332 23456677777777766643322 1110 11122 45556666555442 23333333
Q ss_pred ccccceeeccCCeeeeecchh-hhccCCCceeeccCccCCC
Q 039577 242 LESLFGLLLGGDALEGQIPTC-LANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 242 l~~l~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~~~~ 281 (282)
+++|++|++++|.++ .+|.. |..+++|+++++++|.+++
T Consensus 276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 367899999999999 66765 5899999999999999876
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=201.07 Aligned_cols=246 Identities=21% Similarity=0.184 Sum_probs=163.7
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
..++++..+..++ .+|..+. ++++.|++++|.+....+..+.++++|+.|++++|.+. .++...+..+++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 3456666666664 4565443 57777777777777666667777777777777777775 444336777777777777
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCc-CCCCccEEEeecCcce
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|+++++. +....+..+ .+++|+.|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 777777433345677777777777777763 2233356667777777777743 333333334 6777777887777776
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L 248 (282)
.+|. +..+++|++|++++|.+++..+. .+..++ +|++|++++|.+++..+..+..+ ++|+.|
T Consensus 199 -~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L 260 (440)
T 3zyj_A 199 -EIPN-LTPLIKLDELDLSGNHLSAIRPG-------SFQGLM-HLQKLWMIQSQIQVIERNAFDNL--------QSLVEI 260 (440)
T ss_dssp -SCCC-CTTCSSCCEEECTTSCCCEECTT-------TTTTCT-TCCEEECTTCCCCEECTTSSTTC--------TTCCEE
T ss_pred -cccc-cCCCcccCEEECCCCccCccChh-------hhccCc-cCCEEECCCCceeEEChhhhcCC--------CCCCEE
Confidence 5553 56677778888887777644332 445555 77788888777776655555553 567777
Q ss_pred eccCCeeeeecchhhhccCCCceeeccCccC
Q 039577 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRL 279 (282)
Q Consensus 249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~ 279 (282)
++++|.+++..+..|..+++|+.+++++|.+
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 7777777755556677777788888877765
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.1e-27 Score=207.76 Aligned_cols=258 Identities=18% Similarity=0.120 Sum_probs=188.9
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+++++++|.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|. .+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCC
Confidence 57999999997 5787666 8999999999999876667889999999999999999744454 789999999999999
Q ss_pred CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCc--cEEEeecCcc--e
Q 039577 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNL--ENLFLWQNNL--C 168 (282)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~ 168 (282)
|.+. .+|.. .+++|++|++++|.++....|..+..+++|++|++++|.+...... .+++| +.|++++|.+ .
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL--PIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGG--GGTTSCEEEEEEEECTTTTS
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcc--ccccceeeEEEeeccccccc
Confidence 9998 56665 7999999999999985445678899999999999999988642211 45555 7777777766 3
Q ss_pred eeccchhhC-----------------------------------------------------------------------
Q 039577 169 GIVPDSICN----------------------------------------------------------------------- 177 (282)
Q Consensus 169 ~~~~~~l~~----------------------------------------------------------------------- 177 (282)
+..|..+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 233322222
Q ss_pred ------------CCCCcEEeccCcccceecCCCC-----CC---------------CCC-c-------------------
Q 039577 178 ------------ASEVTILELSKNLFSCLIPNTS-----GV---------------FPN-S------------------- 205 (282)
Q Consensus 178 ------------~~~L~~L~l~~~~~~~~~~~~~-----~~---------------l~~-~------------------- 205 (282)
.++|++|++++|.+++.+|... +. +|. .
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 1266777777777765555432 11 110 0
Q ss_pred ------ccccccccceEEeecccceecCCccccCCccCcccc------------------ccccceeeccCCeeeeecch
Q 039577 206 ------IGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------------------LESLFGLLLGGDALEGQIPT 261 (282)
Q Consensus 206 ------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------------------l~~l~~L~l~~n~~~~~~~~ 261 (282)
...++ +|++|++++|.+++.+|..+..+++|+.|+ +++|+.|++++|.+++.+|.
T Consensus 314 l~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 314 MVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCCCCCSSCC-CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred cccccchhhCC-cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 03445 788888888888876777777777776665 45677777777777765554
Q ss_pred h-hhccCCCceeeccCccCC
Q 039577 262 C-LANLTSLISLNLRSIRLN 280 (282)
Q Consensus 262 ~-~~~l~~L~~l~l~~n~~~ 280 (282)
. +..+++|+++++++|+++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCC
T ss_pred chhccCccCCEEECcCCCCC
Confidence 3 556667777777777664
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=207.82 Aligned_cols=110 Identities=18% Similarity=0.050 Sum_probs=61.4
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 456777777777776555556667777777777777666554555666666666666666654 2332244455555555
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 119 (282)
++.+|.+....+..++.+++|++|++++|.+
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred cccccccccCCCccccccccccEEecCCCcc
Confidence 5554444421111234444444444444433
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.6e-27 Score=194.33 Aligned_cols=247 Identities=22% Similarity=0.205 Sum_probs=202.0
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCc-cccCCCCCcEEEcCCCccccc--CCCCccCCCCCccEEE
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRIVDLSSGIIPGS--LPDDTSGDCIMLRRLS 89 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~ 89 (282)
++++.+++.++ .+|..+. ++|++|++++|.+. .+|. .+.++++|+.|++++|.+... .+. .+..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccc-ccccccccCEEE
Confidence 46888888775 5665443 69999999999998 4554 467999999999999998621 133 455789999999
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
+++|.+. .++..+..+++|++|++++|.++.......+..+++|++|++++|.+....+..+ .+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999988 4677788999999999999998442222467889999999999999987777666 7899999999999987
Q ss_pred e-eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 169 G-IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 169 ~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
+ ..|..+..+++|++|++++|.+++..+. .+..++ +|++|++++|.+++..+..+..+ ++|+.
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~ 227 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT-------AFNSLS-SLQVLNMSHNNFFSLDTFPYKCL--------NSLQV 227 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTT-------TTTTCT-TCCEEECTTSCCSBCCSGGGTTC--------TTCCE
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHH-------HhcCCC-CCCEEECCCCccCccChhhccCc--------ccCCE
Confidence 5 4788888999999999999999865443 555666 99999999999985555455543 67899
Q ss_pred eeccCCeeeeecchhhhccC-CCceeeccCccCCC
Q 039577 248 LLLGGDALEGQIPTCLANLT-SLISLNLRSIRLNS 281 (282)
Q Consensus 248 L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~~~~ 281 (282)
|++++|.+++..+..+..++ +|+++++++|.+++
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99999999988888999985 99999999999875
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=206.79 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+.+..+.+|.++++|++|++++|.+....|..+..+++|++|++++|.+. .++...++.+++|++|
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL 129 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEE
Confidence 467888888888887666677888888888888888887666677888888888888888876 5554357788888888
Q ss_pred EcccCeecc-cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC----cEEEecCccccccCCCCcCCCCccEEEee
Q 039577 89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI----QVIILYGNHLSGHLRSSIYLPNLENLFLW 163 (282)
Q Consensus 89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 163 (282)
++++|.+.. .+|..+..+++|++|++++|.+ ....+..+..+.+| +.+++++|.+....+..+...+|+.++++
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 888888774 3577788888888888888877 33334455555555 67777777766555544433355555555
Q ss_pred cC
Q 039577 164 QN 165 (282)
Q Consensus 164 ~~ 165 (282)
+|
T Consensus 209 ~n 210 (570)
T 2z63_A 209 NN 210 (570)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2e-26 Score=193.79 Aligned_cols=247 Identities=20% Similarity=0.241 Sum_probs=108.2
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|+++++.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+. .++ .+..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEE
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch--HHcCCCcCCEEE
Confidence 344555555554432 22 24445555555555554442 222 444455555555554443 222 244444455554
Q ss_pred cccCeeccc---------------------CCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC
Q 039577 90 FSFNKIRGW---------------------IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL 148 (282)
Q Consensus 90 l~~~~~~~~---------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 148 (282)
+++|.+... ....+..+++|++|++++|.+.. .+. +..+++|+.|++++|.+....
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--VTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC--chh-hccCCCCCEEEccCCcccccc
Confidence 444444421 11123334444444444443311 111 334444555555444443222
Q ss_pred CCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577 149 RSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228 (282)
Q Consensus 149 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 228 (282)
+ ...+++|+.+++++|.+. ..+. +..+++|++|++++|.+++. +. +..++ +|++|++++|.+++ +
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~~~--------~~-~~~l~-~L~~L~l~~n~l~~-~- 258 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKITDL--------SP-LANLS-QLTWLEIGTNQISD-I- 258 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCC--------GG-GTTCT-TCCEEECCSSCCCC-C-
T ss_pred c-ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccCCC--------cc-hhcCC-CCCEEECCCCccCC-C-
Confidence 1 013334444444444333 1111 33444555555555544321 11 33333 45555555544442 1
Q ss_pred ccccCCccCcccc--------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 229 VGFGNLSNMIKCN--------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 229 ~~~~~l~~l~~l~--------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
..+..+++|+.|+ +++|++|++++|.+++..+..+..+++|+++++++|++++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 2233444444333 3456666666666665555566666666666666666554
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.5e-26 Score=201.21 Aligned_cols=245 Identities=21% Similarity=0.185 Sum_probs=139.0
Q ss_pred eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
.+.++..+..++ .+|..+. +++++|++++|.+....+..+.++++|+.|++++|.+. .++...+..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECC
Confidence 345555555553 3454333 46666666666666555556666666666666666665 3333355666666666666
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCc-CCCCccEEEeecCccee
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSI-YLPNLENLFLWQNNLCG 169 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~~ 169 (282)
+|.+....+..+..+++|++|++++|.++ ...+..+..+++|+.|+++++. +.......+ .+++|+.|++++|.++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 66666433334556666666666666652 2222345556666666666533 222222233 5666666666666665
Q ss_pred eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceee
Q 039577 170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL 249 (282)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~ 249 (282)
.+| .+..+++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|+.|+
T Consensus 210 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~ 272 (452)
T 3zyi_A 210 DMP-NLTPLVGLEELEMSGNHFPEIRP-------GSFHGLS-SLKKLWVMNSQVSLIERNAFDGL--------ASLVELN 272 (452)
T ss_dssp SCC-CCTTCTTCCEEECTTSCCSEECG-------GGGTTCT-TCCEEECTTSCCCEECTTTTTTC--------TTCCEEE
T ss_pred ccc-cccccccccEEECcCCcCcccCc-------ccccCcc-CCCEEEeCCCcCceECHHHhcCC--------CCCCEEE
Confidence 444 24556666666666666653322 2444555 66666666666665555544443 4566666
Q ss_pred ccCCeeeeecchhhhccCCCceeeccCccC
Q 039577 250 LGGDALEGQIPTCLANLTSLISLNLRSIRL 279 (282)
Q Consensus 250 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~ 279 (282)
+++|.+++..+..|..+++|+.+++++|.+
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666666644445566666666666666654
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.1e-26 Score=188.50 Aligned_cols=181 Identities=21% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-ecccCCcCCcCCCCceEE
Q 039577 34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQKIGNLTELVEL 112 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L 112 (282)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3455555555554443333444455555555555544422222 44445555555555543 332223344444555555
Q ss_pred EecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191 (282)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (282)
++++|.+ ....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 5555544 22223334444555555555554443333333 444555555555544422222344445555555555544
Q ss_pred ceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
++..+. .+..++ +|++|++++|.++
T Consensus 190 ~~~~~~-------~~~~l~-~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 190 AHVHPH-------AFRDLG-RLMTLYLFANNLS 214 (285)
T ss_dssp CEECTT-------TTTTCT-TCCEEECCSSCCS
T ss_pred cccCHh-------HccCcc-cccEeeCCCCcCC
Confidence 433222 233333 4555555555444
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=7.4e-26 Score=204.52 Aligned_cols=134 Identities=20% Similarity=0.093 Sum_probs=109.4
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
|..+++|+|++|.+++..+.+|.++++|++|+|++|.+....+..+.++++|++|++++|.+. .++...|..+++|++|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 578999999999998766678999999999999999998766677889999999999999987 6666578899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH 143 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 143 (282)
++++|.+....+..++.+++|++|++++|.++....|..+..+++|++|++++|.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999988854444578888899999988887544456666667777777766554
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.8e-26 Score=204.80 Aligned_cols=259 Identities=17% Similarity=0.086 Sum_probs=186.7
Q ss_pred eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
.++++++++.+++ +|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..|. .+..+++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECC
Confidence 3899999999975 777554 8999999999999876667899999999999999999844444 88999999999999
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCc--cEEEeecCcc--
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNL--ENLFLWQNNL-- 167 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-- 167 (282)
+|.+. .+|.. .+++|++|++++|.++....|..+.++++|++|++++|.+...... .+++| +.|++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL--PVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG--GGTTSCEEEEEEEESSCCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh--hhhhceeeEEEeecccccc
Confidence 99998 57766 7999999999999985434557889999999999999988643222 34444 8888887766
Q ss_pred eeeccchhhC----------------------------------------------------------------------
Q 039577 168 CGIVPDSICN---------------------------------------------------------------------- 177 (282)
Q Consensus 168 ~~~~~~~l~~---------------------------------------------------------------------- 177 (282)
++..|..+..
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 3222221111
Q ss_pred -----------CCCCcEEeccCcccceecCCCC-----CC---------------CCC----------------------
Q 039577 178 -----------ASEVTILELSKNLFSCLIPNTS-----GV---------------FPN---------------------- 204 (282)
Q Consensus 178 -----------~~~L~~L~l~~~~~~~~~~~~~-----~~---------------l~~---------------------- 204 (282)
.++|++|++++|.+++.+|... .. +|.
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 1266777777777766555432 00 010
Q ss_pred ---cc-cccccccceEEeecccceecCCccccCCccCcccc------------------ccccceeeccCCeeeeecch-
Q 039577 205 ---SI-GNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------------------LESLFGLLLGGDALEGQIPT- 261 (282)
Q Consensus 205 ---~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------------------l~~l~~L~l~~n~~~~~~~~- 261 (282)
.+ ..++ +|++|++++|.+++.+|..+..+++|+.|+ +++|+.|++++|.+++.+|.
T Consensus 344 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 344 IHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCCSSCC-CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred ccccCccCCC-CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 00 3444 788888888888876777777777666665 35677777777777764554
Q ss_pred hhhccCCCceeeccCccCC
Q 039577 262 CLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 262 ~~~~l~~L~~l~l~~n~~~ 280 (282)
.+..+++|+++++++|+|+
T Consensus 423 ~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp CCCCCTTCCEEECCSSCCC
T ss_pred hhcCcccCCEEECCCCCCC
Confidence 3556666666666666664
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.7e-26 Score=197.21 Aligned_cols=252 Identities=18% Similarity=0.160 Sum_probs=169.4
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+.+..+.++..+++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|...+..+++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 368999999999998766778999999999999999998766777889999999999999997 7777567899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC-------------------cEEEecCccccccCC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI-------------------QVIILYGNHLSGHLR 149 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------------~~L~l~~~~~~~~~~ 149 (282)
++++|.+....+..+..+++|++|++++|.++. .+ +..+++| +.|++++|.+.....
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--CC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCc--cc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 999999886556678899999999999998743 21 2233333 333333333322211
Q ss_pred CCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc
Q 039577 150 SSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV 229 (282)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~ 229 (282)
. ..++|+.|++++|.++ .. ..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++ +|.
T Consensus 223 ~--~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~-~L~~L~L~~n~l~~-~~~ 289 (390)
T 3o6n_A 223 P--VNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMY-------HPFVKMQ-RLERLYISNNRLVA-LNL 289 (390)
T ss_dssp C--CCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEES-------GGGTTCS-SCCEEECCSSCCCE-EEC
T ss_pred c--ccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcCh-------hHccccc-cCCEEECCCCcCcc-cCc
Confidence 1 1234555555555554 22 234445555555555555443222 1233333 44555555444442 233
Q ss_pred cccCCccCcccc---------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 230 GFGNLSNMIKCN---------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 230 ~~~~l~~l~~l~---------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+..+++|+.|+ +++|+.|++++|.+++ ++ +..+++|+++++++|.+++
T Consensus 290 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence 333344444443 4689999999999984 33 7788999999999998753
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.1e-25 Score=195.78 Aligned_cols=230 Identities=18% Similarity=0.097 Sum_probs=193.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 568999999999999888889999999999999999999877788999999999999999997 6776578999999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+....+..+..+++|++|+++++.......+..+..+++|++|++++|.+... +....+++|+.|++++|.++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc
Confidence 99999998655557889999999999985442322334577899999999999999855 33337899999999999999
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L 248 (282)
+..|..+..+++|++|++++|.+++..+. .+..++ +|++|++++|.+++..+..+..+ ++|+.|
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L 295 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERN-------AFDGLA-SLVELNLAHNNLSSLPHDLFTPL--------RYLVEL 295 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTT-------TTTTCT-TCCEEECCSSCCSCCCTTSSTTC--------TTCCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHH-------HhcCCC-CCCEEECCCCcCCccChHHhccc--------cCCCEE
Confidence 77788899999999999999999865443 455666 99999999999985555555554 567888
Q ss_pred eccCCeee
Q 039577 249 LLGGDALE 256 (282)
Q Consensus 249 ~l~~n~~~ 256 (282)
++++|.+.
T Consensus 296 ~L~~Np~~ 303 (452)
T 3zyi_A 296 HLHHNPWN 303 (452)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcC
Confidence 88888765
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=213.94 Aligned_cols=111 Identities=22% Similarity=0.173 Sum_probs=87.6
Q ss_pred CCceEEEEcCCCccccCC-CccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCC-CccCCCCCcc
Q 039577 9 HRRVTALSLPNLTLGGTI-PPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD-DTSGDCIMLR 86 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~ 86 (282)
..++++|++++|...+.+ |.+|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++. ..+..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 467888999888666665 66788888999999998888877788888888999999988888755543 2477888888
Q ss_pred EEEcccCeecccCC-cCCcCCCCceEEEecCCCC
Q 039577 87 RLSFSFNKIRGWIP-QKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 87 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 119 (282)
+|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 88888888775433 4578888888888888876
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.9e-26 Score=205.35 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=62.9
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccc-cCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPG-SLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~ 87 (282)
.+++++|++++|.+.+..|.+|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+. .+..+++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccE
Confidence 3567777777777766666667777777777777777765444446667777777777776653 1222 4555556666
Q ss_pred EEcccCeecccCC-cCCcCCCCceEEEecCCC
Q 039577 88 LSFSFNKIRGWIP-QKIGNLTELVELYLDGNN 118 (282)
Q Consensus 88 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 118 (282)
|++.+|...+.++ ..+..+++|++|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 6655554221222 234444444444444443
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1e-25 Score=189.44 Aligned_cols=244 Identities=23% Similarity=0.321 Sum_probs=156.9
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc------------------
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP------------------ 71 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------------ 71 (282)
+++++|++++|.+++ ++. +..+++|++|++++|.+.. + +.+..+++|++|++++|.+.
T Consensus 66 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA 141 (347)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred CCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCC
Confidence 456666666665543 222 5555555555555555442 2 23444555555555554443
Q ss_pred ----ccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc
Q 039577 72 ----GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147 (282)
Q Consensus 72 ----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 147 (282)
..++ .+..+++|++|++.+|.+.. .+. +..+++|++|++++|.+.. .+. +..+++|+.+++++|.+...
T Consensus 142 n~~~~~~~--~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 142 NHNLSDLS--PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccccc--chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCC
Confidence 1211 25566777777777777663 232 6778889999999888743 443 66778888888888877644
Q ss_pred CCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577 148 LRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227 (282)
Q Consensus 148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~ 227 (282)
.+ ...+++|++|++++|.++ .++. +..+++|++|++++|.+++. +.+..++ +|++|++++|.+++ +
T Consensus 215 ~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~---------~~~~~l~-~L~~L~l~~n~l~~-~ 280 (347)
T 4fmz_A 215 TP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI---------NAVKDLT-KLKMLNVGSNQISD-I 280 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC---------GGGTTCT-TCCEEECCSSCCCC-C
T ss_pred ch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC---------hhHhcCC-CcCEEEccCCccCC-C
Confidence 33 126777888888888776 4444 66777888888888776631 1344455 77777777777663 2
Q ss_pred CccccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 228 PVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 228 ~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+.+..+++|+.|+ +++|++|++++|.+++..| +..+++|+++++++|.|+.
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 3456666666665 5789999999999996655 8899999999999999873
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.3e-25 Score=193.22 Aligned_cols=230 Identities=17% Similarity=0.092 Sum_probs=192.5
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
+..++.|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 578999999999998877788999999999999999998777778889999999999999997 6776578999999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+....+..+..+++|++|+++++.......+..+..+++|++|++++|.+... +....+++|+.|++++|.++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCccC
Confidence 99999998655567889999999999985542322334678899999999999999844 33337899999999999998
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L 248 (282)
+..|..+..+++|++|++++|.+++..+. .+..++ +|++|++++|.+++..+..+..+ ++|+.|
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L 284 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERN-------AFDNLQ-SLVEINLAHNNLTLLPHDLFTPL--------HHLERI 284 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTT-------SSTTCT-TCCEEECTTSCCCCCCTTTTSSC--------TTCCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChh-------hhcCCC-CCCEEECCCCCCCccChhHhccc--------cCCCEE
Confidence 77788899999999999999999865443 455666 99999999999985555555554 567888
Q ss_pred eccCCeee
Q 039577 249 LLGGDALE 256 (282)
Q Consensus 249 ~l~~n~~~ 256 (282)
++++|.+.
T Consensus 285 ~L~~Np~~ 292 (440)
T 3zyj_A 285 HLHHNPWN 292 (440)
T ss_dssp ECCSSCEE
T ss_pred EcCCCCcc
Confidence 88888775
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-25 Score=201.57 Aligned_cols=237 Identities=19% Similarity=0.216 Sum_probs=168.2
Q ss_pred CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577 32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE 111 (282)
Q Consensus 32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 111 (282)
.+.+++.++++++.+....+..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+.+..+..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 46789999999998875444446789999999999999974 44447899999999999999999766667899999999
Q ss_pred EEecCCCCCCCCCCc-cccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577 112 LYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189 (282)
Q Consensus 112 L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (282)
|++++|.++. +|. .+..+++|++|++++|.+....+..+ .+++|+.|++++|.++ .++ +..+++|+.|++++|
T Consensus 128 L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccC
Confidence 9999999843 554 46889999999999999988877767 8999999999999987 333 455677888877777
Q ss_pred ccceecC-CC----------CCCCCCcccccccccceEEeecccceecCCccccCCccCcccc----------------c
Q 039577 190 LFSCLIP-NT----------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN----------------L 242 (282)
Q Consensus 190 ~~~~~~~-~~----------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~----------------l 242 (282)
.+++... .. ...++.. .+.+|+.|++++|.+++ +.++..+++|+.|+ +
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccccccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 7664211 10 0011111 11367888888887764 34566655554444 3
Q ss_pred cccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 243 ~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
++|+.|++++|.+++ +|..+..+++|+.|++++|.++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 345555555555552 3444444555555555555554
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.5e-27 Score=195.96 Aligned_cols=234 Identities=18% Similarity=0.142 Sum_probs=133.2
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEE
Confidence 456666666666655444556666666666666666654332 556666666666666664 222 235666666
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcc
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL 167 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 167 (282)
+++|.+....+. .+++|++|++++|.+ ....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 666666532221 245566666666666 22223345556666666666666654443333 356666666666666
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
+ .++.. ..+++|++|++++|.+++ +|..+..++ +|++|++++|.++ .+|..+..+ ++|+.
T Consensus 182 ~-~~~~~-~~l~~L~~L~Ls~N~l~~--------l~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l--------~~L~~ 241 (317)
T 3o53_A 182 Y-DVKGQ-VVFAKLKTLDLSSNKLAF--------MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFS--------QNLEH 241 (317)
T ss_dssp C-EEECC-CCCTTCCEEECCSSCCCE--------ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCC--------TTCCE
T ss_pred c-ccccc-cccccCCEEECCCCcCCc--------chhhhcccC-cccEEECcCCccc-chhhHhhcC--------CCCCE
Confidence 5 33322 235666666666666652 233344555 6666666666665 345444332 45666
Q ss_pred eeccCCeee-eecchhhhccCCCceeecc
Q 039577 248 LLLGGDALE-GQIPTCLANLTSLISLNLR 275 (282)
Q Consensus 248 L~l~~n~~~-~~~~~~~~~l~~L~~l~l~ 275 (282)
|++++|.+. +.++.++..+++|+.++++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECC
Confidence 666666666 5555666666666666655
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.3e-25 Score=181.36 Aligned_cols=250 Identities=19% Similarity=0.173 Sum_probs=201.6
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~ 87 (282)
++++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. +. .++...+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCE
Confidence 6789999999999987666788999999999999999987778889999999999999997 65 665447889999999
Q ss_pred EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577 88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN 166 (282)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 166 (282)
|++.+|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 999999998666777889999999999999984 3334457889999999999999987766656 78999999999999
Q ss_pred ceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc-cccCCccCcccccccc
Q 039577 167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESL 245 (282)
Q Consensus 167 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l 245 (282)
+++..|..+..+++|++|++++|.+++..+ ..+..++ +|+.|++++|.+...-+. ++ ...+
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~c~~~~~~~----------~~~l 250 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPT-------EALAPLR-ALQYLRLNDNPWVCDCRARPL----------WAWL 250 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCH-------HHHTTCT-TCCEEECCSSCEECSGGGHHH----------HHHH
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCH-------HHcccCc-ccCEEeccCCCccCCCCcHHH----------HHHH
Confidence 987778889999999999999998874321 2466677 999999999988743221 11 1224
Q ss_pred ceeeccCCeeeeecchhhhc--cCCCceeeccCcc
Q 039577 246 FGLLLGGDALEGQIPTCLAN--LTSLISLNLRSIR 278 (282)
Q Consensus 246 ~~L~l~~n~~~~~~~~~~~~--l~~L~~l~l~~n~ 278 (282)
+.+....+.+....|+.+.. +..+...++.+|.
T Consensus 251 ~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred HhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 45556667777788887764 5667777777663
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=192.40 Aligned_cols=246 Identities=18% Similarity=0.160 Sum_probs=193.1
Q ss_pred EEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe
Q 039577 15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK 94 (282)
Q Consensus 15 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 94 (282)
.+.+++.++ .+|..+. ++|++|++++|.+....+..+.++++|+.|++++|.+.+ ++...+..+++|++|++++|.
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCc
Confidence 788888775 5676554 599999999999987656688999999999999999974 444378999999999999999
Q ss_pred ecccCCcC-CcCCCCceEEEecCCCCCCCCCCc--cccCCCCCcEEEecCcc-ccccCCCCc-CCCCccEEEeecCccee
Q 039577 95 IRGWIPQK-IGNLTELVELYLDGNNLQAGLLPS--VIFNSSNIQVIILYGNH-LSGHLRSSI-YLPNLENLFLWQNNLCG 169 (282)
Q Consensus 95 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~~ 169 (282)
+.. ++.. +..+++|++|++++|.++. ++. .+..+++|++|++++|. +....+..+ .+++|++|++++|.+++
T Consensus 112 l~~-~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 112 LSN-LSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp CSS-CCHHHHTTCTTCSEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCc-CCHhHhCCCccCCEEECCCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 984 5554 7889999999999999854 554 67889999999999984 665555556 78999999999999987
Q ss_pred eccchhhCCCCCcEEeccCcccceecCCCCCCCCCccc-ccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577 170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIG-NLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248 (282)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L 248 (282)
..|..+..+++|++|++++|.+. .+|..+. .++ +|++|++++|.+++..+..+...... ..++.+
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~--------~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~-----~~l~~l 254 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHI--------LLLEIFVDVTS-SVECLELRDTDLDTFHFSELSTGETN-----SLIKKF 254 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCST--------THHHHHHHHTT-TEEEEEEESCBCTTCCCC------CC-----CCCCEE
T ss_pred cCHHHHhccccCCeecCCCCccc--------cchhhhhhhcc-cccEEECCCCcccccccccccccccc-----chhhcc
Confidence 77888999999999999999875 3333333 355 99999999999986554444332222 345556
Q ss_pred eccCCeeee----ecchhhhccCCCceeeccCccCCC
Q 039577 249 LLGGDALEG----QIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 249 ~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+++++.+.+ .+|..+..+++|+++++++|+|++
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 666665554 477889999999999999999874
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1e-27 Score=198.81 Aligned_cols=247 Identities=17% Similarity=0.120 Sum_probs=194.6
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcc-eeeCCcccc-------CCCCCcEEEcCCCcccccCCCCcc-C
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSF-YGTLPNELW-------QLQRLRIVDLSSGIIPGSLPDDTS-G 80 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-~ 80 (282)
++++++++++|.+ .+|..+... |+.|++++|.+ ...+|..+. ++++|++|++++|.+.+.+|...+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4677788888888 667666543 88899999988 445666555 789999999999999877887333 8
Q ss_pred CCCCccEEEcccCeecccCCcCCcCC-----CCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc---CCCC-
Q 039577 81 DCIMLRRLSFSFNKIRGWIPQKIGNL-----TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH---LRSS- 151 (282)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~- 151 (282)
.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+ ....+..+..+++|++|++++|.+... +...
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 899999999999999864 6666665 8999999999998 444557788999999999999986532 1111
Q ss_pred -cCCCCccEEEeecCccee--ecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577 152 -IYLPNLENLFLWQNNLCG--IVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227 (282)
Q Consensus 152 -~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~ 227 (282)
..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..|. ..+..++ +|++|++++|.++ .+
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~l~-~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------PSCDWPS-QLNSLNLSFTGLK-QV 268 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------SCCCCCT-TCCEEECTTSCCS-SC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------hhhhhcC-CCCEEECCCCccC-hh
Confidence 268999999999999872 222 2345678999999999999865432 1233345 9999999999998 77
Q ss_pred CccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCCC
Q 039577 228 PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282 (282)
Q Consensus 228 ~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 282 (282)
|..+. ++|++|++++|.+++. |. +..+++|+++++++|+|+++
T Consensus 269 p~~~~----------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 269 PKGLP----------AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSSCC----------SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcc----------CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 77653 4789999999999955 66 89999999999999999874
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.7e-25 Score=192.05 Aligned_cols=170 Identities=25% Similarity=0.304 Sum_probs=98.7
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+++. +. +..+++|++|++++|.+.+. ++ +.++++|+.|++++|.+. .++. +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEE
Confidence 45777788877777643 33 67777788888877777643 33 677788888888887775 3432 6677777777
Q ss_pred EcccCeecccCCc--------------------CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC
Q 039577 89 SFSFNKIRGWIPQ--------------------KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL 148 (282)
Q Consensus 89 ~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 148 (282)
++++|.+.. ++. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+....
T Consensus 140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--IS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC--Ch-hhccCCCCCEEEecCCcccccc
Confidence 777777653 221 13344555555555555422 22 2445555666666555554332
Q ss_pred CCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577 149 RSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192 (282)
Q Consensus 149 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (282)
+ ...+++|+.|++++|.++ .++ .+..+++|++|++++|.+.
T Consensus 216 ~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp G-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCC
T ss_pred c-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccc
Confidence 2 113555555555555554 222 3444555555555555554
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7.5e-25 Score=191.30 Aligned_cols=247 Identities=23% Similarity=0.297 Sum_probs=126.5
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCC-------------
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD------------- 76 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------- 76 (282)
+++++|++++|.+.+..+ +..+++|++|++++|.+.. ++. +.++++|+.|++++|.+.+ ++.
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG 164 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC
Confidence 455566666555543222 5555555555555555442 221 4444555555554444321 110
Q ss_pred ------CccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCC--------------------CCCCccccC
Q 039577 77 ------DTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA--------------------GLLPSVIFN 130 (282)
Q Consensus 77 ------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------~~~~~~~~~ 130 (282)
..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.. ..+ ..+..
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~ 241 (466)
T 1o6v_A 165 NQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLAS 241 (466)
T ss_dssp ESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGG
T ss_pred CcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhc
Confidence 013344455555555555442 1 223444444444444444421 002 12344
Q ss_pred CCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccc
Q 039577 131 SSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLS 210 (282)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~ 210 (282)
+++|+.|++++|.+....+ ...+++|+.|++++|.++ .++. +..+++|++|++++|.+.+ ++. +..++
T Consensus 242 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~--------~~~-~~~l~ 309 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLED--------ISP-ISNLK 309 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCSC--------CGG-GGGCT
T ss_pred CCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCCcccC--------chh-hcCCC
Confidence 4555555555555443322 114555555555555554 2222 4455556666666555542 111 44555
Q ss_pred cccceEEeecccceecCCccccCCccCcccc--------------ccccceeeccCCeeeeecchhhhccCCCceeeccC
Q 039577 211 TSLENFYASSCQLSGGIPVGFGNLSNMIKCN--------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276 (282)
Q Consensus 211 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~--------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 276 (282)
+|++|++++|.+++..| +..+++|+.|+ +++|+.|++++|.+++..| +..+++|+.+++++
T Consensus 310 -~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 310 -NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp -TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred -CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 77777777777664433 45555555554 4567777777777776655 67777788888877
Q ss_pred ccCCC
Q 039577 277 IRLNS 281 (282)
Q Consensus 277 n~~~~ 281 (282)
|.+++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 77665
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.2e-24 Score=187.49 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=137.9
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+++ ++ ++.+++|++|++++|.+.+ ++ +.++++|++|++++|.+. .++ +..+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEE
Confidence 3577778888877765 33 6677777777777777764 32 667777777777777765 333 4566677777
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecC----------------------CCCCCCCCCccccCCCCCcEEEecCccccc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDG----------------------NNLQAGLLPSVIFNSSNIQVIILYGNHLSG 146 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 146 (282)
++++|.+.+ ++ +..+++|++|++++ |.++. ++ +..+++|+.|++++|.++.
T Consensus 133 ~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCe
Confidence 776666653 22 44444444444444 44422 22 3444555555555555543
Q ss_pred cCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCC----------------------
Q 039577 147 HLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN---------------------- 204 (282)
Q Consensus 147 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------- 204 (282)
.. ...+++|+.|++++|.++ .+| +..+++|++|++++|.+++..+.....+..
T Consensus 206 ~~--l~~l~~L~~L~Ls~N~l~-~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 206 LD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred ec--cccCCCCCEEECcCCccc-ccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 31 114556666666666665 344 455666666666666665432221111100
Q ss_pred cccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 205 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+..++ +|+.|++++|...+.+|....++..+..-.+++|++|++++|.+++ ++ +..+++|+.+++++|+|++
T Consensus 281 ~~~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 281 QAEGCR-KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp ECTTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred cccccc-cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 011122 4444444444443333332222222221124577888888888886 33 7788888888888888875
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-25 Score=186.79 Aligned_cols=239 Identities=15% Similarity=0.125 Sum_probs=191.7
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
.+++..+++.+.+.......+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEE
Confidence 356666777776654444455677899999999999987666788899999999999999974332 78899999999
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
+++|.+.+ ++ ..++|++|++++|.++. .+ ...+++|+.|++++|.+....+..+ .+++|+.|++++|.++
T Consensus 87 Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~--~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 87 LNNNYVQE-LL----VGPSIETLHAANNNISR--VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CCSSEEEE-EE----ECTTCCEEECCSSCCSE--EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CcCCcccc-cc----CCCCcCEEECCCCccCC--cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 99999884 33 34899999999999843 22 2347889999999999987766556 7899999999999998
Q ss_pred eeccchh-hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 169 GIVPDSI-CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 169 ~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
+..+..+ ..+++|++|++++|.+++... . ..++ +|++|++++|.+++ +|..+..+ ++|++
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~-~~l~-~L~~L~Ls~N~l~~-l~~~~~~l--------~~L~~ 218 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKG--------Q-VVFA-KLKTLDLSSNKLAF-MGPEFQSA--------AGVTW 218 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEEC--------C-CCCT-TCCEEECCSSCCCE-ECGGGGGG--------TTCSE
T ss_pred cccHHHHhhccCcCCEEECCCCcCccccc--------c-cccc-cCCEEECCCCcCCc-chhhhccc--------CcccE
Confidence 6555555 468999999999999985421 1 1245 89999999999984 45555543 67899
Q ss_pred eeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
|++++|.++ .+|..+..+++|+.+++++|.++
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 999999999 67888999999999999999986
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.6e-26 Score=197.63 Aligned_cols=234 Identities=18% Similarity=0.144 Sum_probs=137.6
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|++++|.+.+..|..|..+++|++|++++|.+.+..| +..+++|+.|++++|.+. .++ ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEE
Confidence 366677777776665555566666777777777766665433 566667777777776664 222 225666777
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcc
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL 167 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 167 (282)
+++|.+.+..+ ..+++|+.|++++|.+ .+..|..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 76666663222 1345667777766666 33334455566666667776666665444433 456666677666666
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
++. +. ...+++|++|++++|.+++ +|+.+..++ +|+.|++++|.+++ +|..+..+ ++|+.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~--------~~~~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l--------~~L~~ 241 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF--------MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFS--------QNLEH 241 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE--------ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCC--------TTCCE
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC--------CCHhHcCCC-CccEEEecCCcCcc-cchhhccC--------CCCCE
Confidence 532 32 2245666667766666653 233344555 66667776666663 45444433 45666
Q ss_pred eeccCCeee-eecchhhhccCCCceeecc
Q 039577 248 LLLGGDALE-GQIPTCLANLTSLISLNLR 275 (282)
Q Consensus 248 L~l~~n~~~-~~~~~~~~~l~~L~~l~l~ 275 (282)
|++++|.+. +.+|.++..++.|+.++++
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666666665 4455566666666555553
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=8.4e-24 Score=183.82 Aligned_cols=250 Identities=17% Similarity=0.120 Sum_probs=163.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+++ +| .+..+++|++|++++|.+.+ +| +..+++|++|++++|.+.+ ++ +..+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEE
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEE
Confidence 4789999999999986 45 68999999999999999986 44 7899999999999999974 43 6789999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+.+ ++ +..+++|++|++++|.++. ++ +..+++|++|++++|......+ ...+++|+.|++++|.++
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccc
Confidence 999999985 44 8899999999999999844 32 5566677777777664322221 114555666666666555
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCC-------------CCCCCCcccccccccceEEeecccceecCCccccCCc
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNT-------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLS 235 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 235 (282)
.+| +..+++|++|++++|.+++..-.. ...+| +..++ +|+.|++++|.+++..+..+.++.
T Consensus 184 -~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 184 -ELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLT-QLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp -CCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCT-TCSEEECCSSCCSCCCCTTCTTCC
T ss_pred -eec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccC-CCCEEEeeCCcCCCcCHHHCCCCC
Confidence 233 344444455544444443220000 01233 44555 788888888877754333333322
Q ss_pred -------cCcccc--------------ccccceeeccCCeeeeecch--------hhhccCCCceeeccCccCCC
Q 039577 236 -------NMIKCN--------------LESLFGLLLGGDALEGQIPT--------CLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 236 -------~l~~l~--------------l~~l~~L~l~~n~~~~~~~~--------~~~~l~~L~~l~l~~n~~~~ 281 (282)
+++.++ +++|+.|++++|...+.+|. .+..+++|+++++++|+|++
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred EEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 122222 24566666666655444442 23445667777777777665
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-24 Score=188.44 Aligned_cols=217 Identities=16% Similarity=0.127 Sum_probs=180.7
Q ss_pred CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577 32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE 111 (282)
Q Consensus 32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 111 (282)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+ ++ ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-LL----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE-EE----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC-CC----CCCCcCE
Confidence 44599999999999987667789999999999999999975443 7889999999999999884 33 2389999
Q ss_pred EEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhh-CCCCCcEEeccCc
Q 039577 112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSIC-NASEVTILELSKN 189 (282)
Q Consensus 112 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 189 (282)
|++++|.++. .+ ...+++|+.|++++|.+....+..+ .+++|+.|++++|.+++..|..+. .+++|++|++++|
T Consensus 104 L~L~~N~l~~--~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISR--VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCC--EE--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCC--CC--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999999843 33 2356889999999999987776666 789999999999999977777765 6899999999999
Q ss_pred ccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCC
Q 039577 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSL 269 (282)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L 269 (282)
.+++..+ ...++ +|+.|++++|.+++ +|+.+..+ ++|+.|++++|.++ .+|..+..+++|
T Consensus 180 ~l~~~~~---------~~~l~-~L~~L~Ls~N~l~~-~~~~~~~l--------~~L~~L~Ls~N~l~-~lp~~l~~l~~L 239 (487)
T 3oja_A 180 FIYDVKG---------QVVFA-KLKTLDLSSNKLAF-MGPEFQSA--------AGVTWISLRNNKLV-LIEKALRFSQNL 239 (487)
T ss_dssp CCCEEEC---------CCCCT-TCCEEECCSSCCCE-ECGGGGGG--------TTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred ccccccc---------cccCC-CCCEEECCCCCCCC-CCHhHcCC--------CCccEEEecCCcCc-ccchhhccCCCC
Confidence 9986522 12355 89999999999985 45445543 67899999999999 478889999999
Q ss_pred ceeeccCccCC
Q 039577 270 ISLNLRSIRLN 280 (282)
Q Consensus 270 ~~l~l~~n~~~ 280 (282)
+.+++++|.+.
T Consensus 240 ~~L~l~~N~l~ 250 (487)
T 3oja_A 240 EHFDLRGNGFH 250 (487)
T ss_dssp CEEECTTCCBC
T ss_pred CEEEcCCCCCc
Confidence 99999999986
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.8e-23 Score=167.77 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=168.6
Q ss_pred CeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCC
Q 039577 2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81 (282)
Q Consensus 2 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (282)
|+.|++ .+..++++++++.++ .+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+. .++...+..
T Consensus 9 ~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~ 83 (270)
T 2o6q_A 9 GGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKE 83 (270)
T ss_dssp TCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSS
T ss_pred CCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcC
Confidence 567776 456889999999887 4676554 68999999999998655567889999999999999997 777657789
Q ss_pred CCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEE
Q 039577 82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENL 160 (282)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L 160 (282)
+++|++|++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+...++..+ .+++|+.|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 99999999999998854445678899999999999998 33444567889999999999999887666655 78999999
Q ss_pred EeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
++++|.+++..+..+..+++|++|++++|.+++..+ ..+..++ +|+.|++++|.+.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-------GAFDSLE-KLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCT-TCCEEECCSSCBC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-------HHhcccc-CCCEEEecCCCee
Confidence 999999884444457788999999999998874322 2345566 8999999999876
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.8e-23 Score=168.32 Aligned_cols=224 Identities=20% Similarity=0.161 Sum_probs=167.9
Q ss_pred EEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccC
Q 039577 14 ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN 93 (282)
Q Consensus 14 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 93 (282)
.++..+..+. .+|..+. ++|++|++++|.+....+..+.++++|+.|++++|.+. .++...+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 3455555453 4666553 57999999999998766668889999999999999987 555547889999999999999
Q ss_pred eecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc-CCCCc-CCCCccEEEeecCcceeec
Q 039577 94 KIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH-LRSSI-YLPNLENLFLWQNNLCGIV 171 (282)
Q Consensus 94 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~ 171 (282)
.+....+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.+... .+..+ .+++|+.|++++|.+++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 9986666778899999999999998833 3333577889999999999988753 35555 7889999999999888555
Q ss_pred cchhhCCCCCc----EEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577 172 PDSICNASEVT----ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247 (282)
Q Consensus 172 ~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~ 247 (282)
+..+..+.+++ +|++++|.+++..+ ...... +|++|++++|.+++..+..+..+ ++|++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~--------~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~ 228 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP--------GAFKEI-RLKELALDTNQLKSVPDGIFDRL--------TSLQK 228 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECT--------TSSCSC-CEEEEECCSSCCSCCCTTTTTTC--------CSCCE
T ss_pred HHHhhhhhhccccceeeecCCCcccccCc--------cccCCC-cccEEECCCCceeecCHhHhccc--------ccccE
Confidence 55555555555 88889988874433 222333 78999999988874433344443 56788
Q ss_pred eeccCCeeeeec
Q 039577 248 LLLGGDALEGQI 259 (282)
Q Consensus 248 L~l~~n~~~~~~ 259 (282)
|++++|.+.+.-
T Consensus 229 L~l~~N~~~c~c 240 (276)
T 2z62_A 229 IWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCBCCCT
T ss_pred EEccCCcccccC
Confidence 888888887554
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=7.2e-23 Score=177.81 Aligned_cols=244 Identities=24% Similarity=0.303 Sum_probs=107.1
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
++++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. ..+|++|++++|.+. .+| .+..+++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~--~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCc--cccCCCCCCEEEC
Confidence 44444444444432 33 24444444444444444432 2221 124444444444443 233 2344444555555
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 170 (282)
.+|.+.+ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|.+...+ .. +++|+.|++++|.++ .
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~N~l~-~ 271 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLLKTLP-DL--PPSLEALNVRDNYLT-D 271 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCCSSCC-SC--CTTCCEEECCSSCCS-C
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCcCCccc-cc--ccccCEEECCCCccc-c
Confidence 4444442 2221 134455555555442 2332 445555666666655554321 11 345555555555554 2
Q ss_pred ccchhhCCCCCcEEeccCccccee--cCCCCCCC------CCcccccccccceEEeecccceecCCccccCCccCcccc-
Q 039577 171 VPDSICNASEVTILELSKNLFSCL--IPNTSGVF------PNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN- 241 (282)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~- 241 (282)
+|.. +++|++|++++|.+++. .|..+..+ ...+...+.+|++|++++|.+++ +|..+ ++|+.|+
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~---~~L~~L~L 344 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIA 344 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccC---CcCCEEEC
Confidence 3322 24556666666655541 11110000 00111222367777777776663 44432 3333333
Q ss_pred -----------ccccceeeccCCeeee--ecchhhhcc-------------CCCceeeccCccCCC
Q 039577 242 -----------LESLFGLLLGGDALEG--QIPTCLANL-------------TSLISLNLRSIRLNS 281 (282)
Q Consensus 242 -----------l~~l~~L~l~~n~~~~--~~~~~~~~l-------------~~L~~l~l~~n~~~~ 281 (282)
+++|++|++++|.+++ .+|.++..+ ++|+.+++++|.+++
T Consensus 345 ~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 345 SFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 3578888888888887 677777776 778888888888875
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.6e-23 Score=184.66 Aligned_cols=229 Identities=24% Similarity=0.310 Sum_probs=140.7
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
..++.|+++++.++ .+|..+. ++|++|++++|.+. .+|. .+++|+.|++++|.+. .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 35777788777775 5666554 67777777777776 4554 4677777777777775 5554 456777777
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-----------------
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI----------------- 152 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------- 152 (282)
+++|.+.. +|. .+++|++|++++|.++. +|.. +++|++|++++|.+...+ ...
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc--CCCC---CCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCCCCCc
Confidence 77777663 443 34566666666666533 4432 355666666666554322 110
Q ss_pred -CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577 153 -YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF 231 (282)
Q Consensus 153 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 231 (282)
.+++|+.|++++|.++ .+|.. +++|+.|++++|.++ .+|.. .+ +|+.|++++|.++ .+|.
T Consensus 178 ~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~--------~l~~~---~~-~L~~L~Ls~N~L~-~lp~-- 238 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT--------SLPAL---PS-GLKELIVSGNRLT-SLPV-- 238 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS--------SCCCC---CT-TCCEEECCSSCCS-CCCC--
T ss_pred ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc--------ccCCC---CC-CCCEEEccCCccC-cCCC--
Confidence 1244444444444444 23321 234444444444333 12211 12 6777777777776 3442
Q ss_pred cCCccCcccc------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 232 GNLSNMIKCN------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 232 ~~l~~l~~l~------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
.+++|+.|+ +++|+.|++++|.++ .+|..+..+++|+.+++++|.+++
T Consensus 239 -~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 239 -LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -CCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 234444444 357999999999999 889999999999999999999875
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3e-23 Score=168.92 Aligned_cols=209 Identities=18% Similarity=0.122 Sum_probs=171.8
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence 567999999999998766668999999999999999998766778889999999999999997 4454478999999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCcc----EEEee
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLE----NLFLW 163 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~----~L~l~ 163 (282)
++.+|.+....+..+..+++|++|++++|.++...+|..+..+++|++|++++|.+....+..+ .+.+|+ .++++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 9999998865455788999999999999998544568889999999999999999987666555 444455 89999
Q ss_pred cCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577 164 QNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227 (282)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~ 227 (282)
+|.+. .++.......+|++|++++|.+++..+ ..+..++ +|++|++++|.+.+.-
T Consensus 186 ~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD-------GIFDRLT-SLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SSCCC-EECTTSSCSCCEEEEECCSSCCSCCCT-------TTTTTCC-SCCEEECCSSCBCCCT
T ss_pred CCccc-ccCccccCCCcccEEECCCCceeecCH-------hHhcccc-cccEEEccCCcccccC
Confidence 99998 555444455689999999999884322 2345666 9999999999987443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.5e-25 Score=183.55 Aligned_cols=224 Identities=22% Similarity=0.166 Sum_probs=176.0
Q ss_pred ceEEEEcCCCccc-cCCCcccc-------CCCCccEEEecCCcceeeCCccc--cCCCCCcEEEcCCCcccccCCCCccC
Q 039577 11 RVTALSLPNLTLG-GTIPPHIG-------NLSFLVSLTSVAKSFYGTLPNEL--WQLQRLRIVDLSSGIIPGSLPDDTSG 80 (282)
Q Consensus 11 ~l~~l~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (282)
.+++|++++|.+. ..++..+. ++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+. |. .+.
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~ 141 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DA-WLA 141 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS-HHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hH-HHH
Confidence 3778899998884 45666555 78999999999999998888876 7899999999999999744 54 566
Q ss_pred CC-----CCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCC-CCCccc--cCCCCCcEEEecCccccccC--C-
Q 039577 81 DC-----IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG-LLPSVI--FNSSNIQVIILYGNHLSGHL--R- 149 (282)
Q Consensus 81 ~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~~--~- 149 (282)
.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+... ..+..+ ..+++|++|++++|.+.... +
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 65 8999999999999976668899999999999999986221 012233 67899999999999887321 1
Q ss_pred CCc-CCCCccEEEeecCcceeecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577 150 SSI-YLPNLENLFLWQNNLCGIVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227 (282)
Q Consensus 150 ~~~-~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~ 227 (282)
..+ .+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. + +|++|++++|.+++.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~ip~~~~--~-~L~~L~Ls~N~l~~~- 289 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--------QVPKGLP--A-KLSVLDLSYNRLDRN- 289 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--------SCCSSCC--S-EEEEEECCSSCCCSC-
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--------hhhhhcc--C-CceEEECCCCCCCCC-
Confidence 222 57899999999999985553 34456789999999999987 3444444 4 899999999999844
Q ss_pred CccccCCccCccccccccceeeccCCeeee
Q 039577 228 PVGFGNLSNMIKCNLESLFGLLLGGDALEG 257 (282)
Q Consensus 228 ~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~ 257 (282)
|. +..+ ++|++|++++|.+++
T Consensus 290 p~-~~~l--------~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 PS-PDEL--------PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC-TTTS--------CEEEEEECTTCTTTC
T ss_pred hh-HhhC--------CCCCEEeccCCCCCC
Confidence 55 5554 678999999998875
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.8e-22 Score=182.28 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=121.8
Q ss_pred EEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccC
Q 039577 14 ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN 93 (282)
Q Consensus 14 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 93 (282)
+.+-++-+++ .+|..+. +++++|+|++|.++...+..|.++++|++|++++|.+. .++.+.|..+++|++|++++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence 3455555554 5776553 58999999999998766678999999999999999997 677668999999999999999
Q ss_pred eecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC-CCCc-CCCCccEEEeecCccee
Q 039577 94 KIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL-RSSI-YLPNLENLFLWQNNLCG 169 (282)
Q Consensus 94 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~ 169 (282)
++....+..|..+++|++|++++|.++. ..+..+.++++|++|++++|.+.... +..+ .+++|++|++++|.+++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9985444568999999999999999843 33446889999999999999987543 3444 78999999999887653
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1e-23 Score=183.09 Aligned_cols=231 Identities=24% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCC-------------cEEEcCCCcccccCC
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL-------------RIVDLSSGIIPGSLP 75 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~~ 75 (282)
..++++|++++|.+ +++|.+++++++|++|++++|.+.+.+|..++++++| +.|++++|.++ .+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 57899999999999 8899999999999999999999988889888877654 88888888775 444
Q ss_pred CCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCC------------------CCCCccccCCCCCcEE
Q 039577 76 DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA------------------GLLPSVIFNSSNIQVI 137 (282)
Q Consensus 76 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------~~~~~~~~~~~~L~~L 137 (282)
. ..++|++|++++|.+.+ +|.. .++|++|++++|.++. ..+| .+..+++|++|
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 4 13567777777766664 4432 2445555555544421 0133 24444444555
Q ss_pred EecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEE
Q 039577 138 ILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFY 217 (282)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 217 (282)
++++|.+... +.. ..+|+.|++++|.++ .+| .+..+++|++|++++|.+++ +|.. +.+|++|+
T Consensus 159 ~l~~N~l~~l-p~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~--------l~~~----~~~L~~L~ 221 (454)
T 1jl5_A 159 DVDNNSLKKL-PDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK--------LPDL----PLSLESIV 221 (454)
T ss_dssp ECCSSCCSCC-CCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--------CCCC----CTTCCEEE
T ss_pred ECCCCcCccc-CCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc--------CCCC----cCcccEEE
Confidence 5544444321 111 234445555555444 233 24444555555555554442 1111 12555566
Q ss_pred eecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577 218 ASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 218 l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+++|.+. .+|. +.. +++|+.|++++|.+++ +|.. +++|+.+++++|++++
T Consensus 222 l~~n~l~-~lp~-~~~--------l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQN--------LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCS-SCCC-CTT--------CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred CcCCcCC-cccc-cCC--------CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 6655554 4442 332 3567777777887773 4432 2566666666666654
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=9.9e-23 Score=165.50 Aligned_cols=204 Identities=20% Similarity=0.224 Sum_probs=106.1
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS 89 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 89 (282)
+++++|+++++.+.. + ..+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEE
Confidence 455566666655432 2 234555666666666665543 2 24555566666666666554 33332455556666666
Q ss_pred cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
+++|.+.+..+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.++...+..+ .+++|+.|++++|.++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 6666555333333455566666666666552 2222334455556666666665554444333 4555666666665555
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCC
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL 234 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 234 (282)
+..+..+..+++|++|++++|.+.+. ++ .++.++++.|.++|.+|.+++.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~--------------~~-~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT--------------CP-GIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC--------------TT-TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc--------------Cc-HHHHHHHHHHhCCCcccCccccc
Confidence 33333345555566666655554421 11 45555555555555555555443
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.5e-26 Score=200.34 Aligned_cols=267 Identities=16% Similarity=0.161 Sum_probs=154.4
Q ss_pred ceEEEEcCCCcccc----CCCccccCCCCccEEEecCCcceeeCCccc-----cCCCCCcEEEcCCCcccccC----CCC
Q 039577 11 RVTALSLPNLTLGG----TIPPHIGNLSFLVSLTSVAKSFYGTLPNEL-----WQLQRLRIVDLSSGIIPGSL----PDD 77 (282)
Q Consensus 11 ~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~----~~~ 77 (282)
++++|++++|.+.. .++..+..+++|++|++++|.+....+..+ ...++|+.|++++|.+.+.. +.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~- 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS- 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-
Confidence 45555555555542 234455555555555555555542211111 11345555555555554211 11
Q ss_pred ccCCCCCccEEEcccCeecccCCcCCc-----CCCCceEEEecCCCCCCCC---CCccccCCCCCcEEEecCccccccCC
Q 039577 78 TSGDCIMLRRLSFSFNKIRGWIPQKIG-----NLTELVELYLDGNNLQAGL---LPSVIFNSSNIQVIILYGNHLSGHLR 149 (282)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 149 (282)
.+..+++|++|++++|.+....+..+. ..++|++|++++|.++... ++..+...++|++|++++|.+.....
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 234456677777776665532222221 2457777777777663211 24445566778888888877653221
Q ss_pred -----CCc-CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEee
Q 039577 150 -----SSI-YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYAS 219 (282)
Q Consensus 150 -----~~~-~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 219 (282)
... .+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+. .+...+.....+|++|+++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR---LLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH---HHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH---HHHHHhccCCccceeeEcC
Confidence 111 367788888888877632 455666677888888888877543211 1111111111266777777
Q ss_pred cccceec----CCccccCCccCcccc---------------------ccccceeeccCCeeee----ecchhhhccCCCc
Q 039577 220 SCQLSGG----IPVGFGNLSNMIKCN---------------------LESLFGLLLGGDALEG----QIPTCLANLTSLI 270 (282)
Q Consensus 220 ~n~~~~~----~~~~~~~l~~l~~l~---------------------l~~l~~L~l~~n~~~~----~~~~~~~~l~~L~ 270 (282)
+|.+++. ++..+..+++|+.|+ .++|++|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 7666533 234444555565555 2489999999999986 6778888899999
Q ss_pred eeeccCccCCC
Q 039577 271 SLNLRSIRLNS 281 (282)
Q Consensus 271 ~l~l~~n~~~~ 281 (282)
++++++|+|++
T Consensus 402 ~L~l~~N~i~~ 412 (461)
T 1z7x_W 402 ELDLSNNCLGD 412 (461)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCCCCH
Confidence 99999999874
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.2e-21 Score=157.37 Aligned_cols=203 Identities=22% Similarity=0.208 Sum_probs=157.1
Q ss_pred CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577 35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL 114 (282)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 114 (282)
..++++++++.++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5788999998887 4776553 68999999999987 666557889999999999999988433344678999999999
Q ss_pred cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccce
Q 039577 115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193 (282)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 193 (282)
++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 999984 3334456788999999999999987776666 78999999999999874334447788999999999998874
Q ss_pred ecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577 194 LIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ 258 (282)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~ 258 (282)
..+ ..+..++ +|++|++++|.+++..+..+..+ ++|+.|++++|.+...
T Consensus 172 ~~~-------~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 172 VPE-------GAFDKLT-ELKTLKLDNNQLKRVPEGAFDSL--------EKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCT-------TTTTTCT-TCCEEECCSSCCSCCCTTTTTTC--------TTCCEEECCSSCBCCS
T ss_pred eCh-------hHhccCC-CcCEEECCCCcCCcCCHHHhccc--------cCCCEEEecCCCeeCC
Confidence 322 2355566 89999999998884444345443 6788888888887643
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2e-21 Score=159.15 Aligned_cols=198 Identities=21% Similarity=0.209 Sum_probs=166.6
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++++++++.++ .+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+. .++. ...+++|++|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCCcCCEE
Confidence 578999999999886 5676554 78999999999998777788899999999999999987 4554 2688999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
++++|.+. .+|..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+...++..+ .+++|+.|++++|.+
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99999998 67888889999999999999984 3344668889999999999999987766666 789999999999999
Q ss_pred eeeccc-hhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 168 CGIVPD-SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 168 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
+ .+|. .+..+++|++|++++|.++ .+|..+...+ .|+.+++++|.+.
T Consensus 161 ~-~l~~~~~~~l~~L~~L~L~~N~l~--------~ip~~~~~~~-~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 T-ELPAGLLNGLENLDTLLLQENSLY--------TIPKGFFGSH-LLPFAFLHGNPWL 208 (290)
T ss_dssp S-CCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred C-ccCHHHhcCcCCCCEEECCCCcCC--------ccChhhcccc-cCCeEEeCCCCcc
Confidence 8 5554 4577899999999999987 4555666666 8999999998875
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.9e-22 Score=161.40 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=174.5
Q ss_pred EEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe
Q 039577 15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK 94 (282)
Q Consensus 15 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 94 (282)
+++..+.+... ..+..+++|+.|++.++.+.. + +.+..+++|+.|++++|.+. .++ .+..+++|++|++++|.
T Consensus 24 l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 24 ANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSC
T ss_pred HHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCc
Confidence 34444444332 234567899999999998763 3 35788999999999999986 343 57889999999999999
Q ss_pred ecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccc
Q 039577 95 IRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPD 173 (282)
Q Consensus 95 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~ 173 (282)
+.+..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..+.
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 98655556788999999999999984 3444457888999999999999987766665 789999999999999855455
Q ss_pred hhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCC
Q 039577 174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGD 253 (282)
Q Consensus 174 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n 253 (282)
.+..+++|++|++++|.+++..+ ..+..++ +|+.|++++|.+.+.. ++++.|+++.|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~~~~---------------~~l~~l~~~~n 232 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPD-------GVFDRLT-SLQYIWLHDNPWDCTC---------------PGIRYLSEWIN 232 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT-------TTTTTCT-TCCEEECCSSCBCCCT---------------TTTHHHHHHHH
T ss_pred HhcCCccCCEEECCCCcCCccCH-------HHHhCCc-CCCEEEccCCCccccC---------------cHHHHHHHHHH
Confidence 56788999999999999884433 2455666 9999999999876332 45777888889
Q ss_pred eeeeecchhhhccCCC
Q 039577 254 ALEGQIPTCLANLTSL 269 (282)
Q Consensus 254 ~~~~~~~~~~~~l~~L 269 (282)
.++|.+|.+++.++..
T Consensus 233 ~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 233 KHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HTGGGBBCTTSCBCGG
T ss_pred hCCCcccCcccccCCC
Confidence 9999999888876543
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.4e-25 Score=186.10 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=86.6
Q ss_pred EcCCCccccCCCccccCCCCccEEEecCCcceeeCC----ccccCCC-CCcEEEcCCCcccccCCCCccCCC-----CCc
Q 039577 16 SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP----NELWQLQ-RLRIVDLSSGIIPGSLPDDTSGDC-----IML 85 (282)
Q Consensus 16 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L 85 (282)
+++.+.+++.+|..+...++|++|++++|.+....+ ..+..++ +|+.|++++|.+.+..+. .+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCc
Confidence 444555554444444444445555555555543222 3334444 555555555555422221 22221 555
Q ss_pred cEEEcccCeecccCCcC----CcCC-CCceEEEecCCCCCCCCCCcc----ccC-CCCCcEEEecCccccccCCCCc---
Q 039577 86 RRLSFSFNKIRGWIPQK----IGNL-TELVELYLDGNNLQAGLLPSV----IFN-SSNIQVIILYGNHLSGHLRSSI--- 152 (282)
Q Consensus 86 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~~~--- 152 (282)
++|++++|.+.+..+.. +..+ ++|++|++++|.++. ..+.. +.. ..+|++|++++|.+.......+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 55555555554322221 2222 455555555555421 11111 111 2355555555555542221111
Q ss_pred --CC-CCccEEEeecCcceeeccc----hhhCC-CCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 153 --YL-PNLENLFLWQNNLCGIVPD----SICNA-SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 153 --~~-~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
.. ++|++|++++|.+++..+. .+... ++|++|++++|.+++... ..++..+...+.+|++|++++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---AELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---HHHHHHHhcCCCCceEEECcCCCCC
Confidence 12 2555555555555422222 22223 355555555555543111 1223333332225555555555554
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=4.4e-21 Score=157.09 Aligned_cols=201 Identities=21% Similarity=0.271 Sum_probs=161.0
Q ss_pred ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL 109 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (282)
+.+++++++++++++.+. .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+.. ++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 567889999999998887 5776554 78999999999997 4443378899999999999999884 3433 688999
Q ss_pred eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (282)
++|++++|.++. +|..+..+++|++|++++|.++..++..+ .+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 80 ~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999854 77778888999999999999987766666 789999999999998844444567888999999999
Q ss_pred cccceecCCCCCCCCC-cccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeee
Q 039577 189 NLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALE 256 (282)
Q Consensus 189 ~~~~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~ 256 (282)
|.++. +|. .+..++ +|+.|++++|.++ .+|..+..+ .+|+.+++++|.+.
T Consensus 158 N~l~~--------l~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~--------~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTE--------LPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGS--------HLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSC--------CCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTT--------CCCSEEECCSCCBC
T ss_pred CcCCc--------cCHHHhcCcC-CCCEEECCCCcCC-ccChhhccc--------ccCCeEEeCCCCcc
Confidence 98873 332 344566 8999999999998 677766554 46788888888776
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.1e-24 Score=177.77 Aligned_cols=250 Identities=19% Similarity=0.218 Sum_probs=178.9
Q ss_pred CCceEEEEcCCCccccCCCccccCC--CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccccc-CCCCccCCCCCc
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNL--SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGS-LPDDTSGDCIML 85 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L 85 (282)
+..+++++++++.+. +..+..+ ++++.+++.+|.+.+..+. +..+++|+.|++++|.+.+. ++. .+..+++|
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L 120 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKL 120 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCC
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCC
Confidence 345888999988765 3445555 7899999999988765554 66889999999999987644 454 67788999
Q ss_pred cEEEcccCeecccCCcCCcCCCCceEEEecCC-CCCCCCCCccccCCCCCcEEEecCc-ccccc-CCCCc-CCC-CccEE
Q 039577 86 RRLSFSFNKIRGWIPQKIGNLTELVELYLDGN-NLQAGLLPSVIFNSSNIQVIILYGN-HLSGH-LRSSI-YLP-NLENL 160 (282)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~-~~~-~L~~L 160 (282)
++|++++|.+.+..+..+..+++|++|++++| .++...++..+..+++|++|++++| .++.. .+..+ .++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999999887666677778899999999998 4532234555777899999999998 76643 22323 677 99999
Q ss_pred EeecCc--ce-eeccchhhCCCCCcEEeccCcc-cceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCcc
Q 039577 161 FLWQNN--LC-GIVPDSICNASEVTILELSKNL-FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSN 236 (282)
Q Consensus 161 ~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 236 (282)
++++|. ++ +.++..+..+++|++|++++|. +++. .+..+..++ +|++|++++|. ...+..+..+.+
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~l~~ 270 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-------CFQEFFQLN-YLQHLSLSRCY--DIIPETLLELGE 270 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-------GGGGGGGCT-TCCEEECTTCT--TCCGGGGGGGGG
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-------HHHHHhCCC-CCCEeeCCCCC--CCCHHHHHHHhc
Confidence 999984 44 3566677788999999999997 5533 233566676 99999999985 122333222222
Q ss_pred CccccccccceeeccCCeeeeecchhhhcc-CCCceeeccCccCCCC
Q 039577 237 MIKCNLESLFGLLLGGDALEGQIPTCLANL-TSLISLNLRSIRLNST 282 (282)
Q Consensus 237 l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~ 282 (282)
+++|+.|++++| +++. .+..+ .++..|++++|.+++.
T Consensus 271 -----~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 271 -----IPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp -----CTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCT
T ss_pred -----CCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccc
Confidence 367888888888 5432 33333 2466777888888763
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.4e-21 Score=153.43 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=154.4
Q ss_pred cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCCCCccEEEccc-CeecccCCc
Q 039577 24 GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDCIMLRRLSFSF-NKIRGWIPQ 101 (282)
Q Consensus 24 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~ 101 (282)
..+|. +. ++|++|++++|.+....+..+..+++|+.|++++|. +. .++...+..+++|++|++++ |.+....+.
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 35665 43 489999999999886656678889999999999996 75 66655788899999999998 888854456
Q ss_pred CCcCCCCceEEEecCCCCCCCCCCccccCCCCCc---EEEecCc-cccccCCCCc-CCCCcc-EEEeecCcceeeccchh
Q 039577 102 KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQ---VIILYGN-HLSGHLRSSI-YLPNLE-NLFLWQNNLCGIVPDSI 175 (282)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~-~~~~L~-~L~l~~~~~~~~~~~~l 175 (282)
.+..+++|++|++++|.++. +|. +..+.+|+ .|++++| .+....+..+ .+++|+ .+++++|.++ .+|...
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 67889999999999998844 665 67777777 9999999 8876666656 788999 9999999987 666554
Q ss_pred hCCCCCcEEeccCcc-cceecCCCCCCCCCccccc-ccccceEEeecccceecCCccccCCccCccccccccceeeccCC
Q 039577 176 CNASEVTILELSKNL-FSCLIPNTSGVFPNSIGNL-STSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGD 253 (282)
Q Consensus 176 ~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n 253 (282)
...++|++|++++|. +++..+. .+..+ + +|++|++++|.++ .+|.. .+ ++|+.|+++++
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~-------~~~~l~~-~L~~L~l~~N~l~-~l~~~--~~--------~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKD-------AFGGVYS-GPSLLDVSQTSVT-ALPSK--GL--------EHLKELIARNT 236 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTT-------TTTTCSB-CCSEEECTTCCCC-CCCCT--TC--------TTCSEEECTTC
T ss_pred cCCCCCCEEEcCCCCCcccCCHH-------Hhhcccc-CCcEEECCCCccc-cCChh--Hh--------ccCceeeccCc
Confidence 444789999999995 7744332 34455 5 8999999999987 55543 22 55666766654
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.1e-24 Score=183.00 Aligned_cols=247 Identities=18% Similarity=0.235 Sum_probs=167.7
Q ss_pred CCCccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCcc---cccCCCC------ccCCCCCccEEEcc
Q 039577 25 TIPPHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGII---PGSLPDD------TSGDCIMLRRLSFS 91 (282)
Q Consensus 25 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~---~~~~~~~------~~~~l~~L~~L~l~ 91 (282)
.++..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+ .+.+|.. .+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3556667788888888888887654 333466788888888888643 2333331 13577888888888
Q ss_pred cCeecc----cCCcCCcCCCCceEEEecCCCCCCC---CCCccccCC---------CCCcEEEecCcccccc-CC---CC
Q 039577 92 FNKIRG----WIPQKIGNLTELVELYLDGNNLQAG---LLPSVIFNS---------SNIQVIILYGNHLSGH-LR---SS 151 (282)
Q Consensus 92 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~---------~~L~~L~l~~~~~~~~-~~---~~ 151 (282)
+|.+.. .++..+..+++|++|++++|.++.. .++..+..+ ++|++|++++|.+... .+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888775 2455667788888998888876210 112222233 7888898888887622 22 12
Q ss_pred c-CCCCccEEEeecCccee-----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577 152 I-YLPNLENLFLWQNNLCG-----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225 (282)
Q Consensus 152 ~-~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~ 225 (282)
+ .+++|+.|++++|.+.. ..+..+..+++|++|++++|.+++.. ...+|..+..++ +|++|++++|.+++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~-~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWP-NLRELGLNDCLLSA 258 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCT-TCCEEECTTCCCCH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCC-CcCEEECCCCCCch
Confidence 2 57788999999888762 22336677888999999998875221 113455666777 89999999988874
Q ss_pred c----CCccccCCccCccccccccceeeccCCeeee----ecchhh-hccCCCceeeccCccCCC
Q 039577 226 G----IPVGFGNLSNMIKCNLESLFGLLLGGDALEG----QIPTCL-ANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 226 ~----~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~----~~~~~~-~~l~~L~~l~l~~n~~~~ 281 (282)
. ++..+.. ..+++|++|++++|.+++ .+|..+ .++++|+.|++++|+|++
T Consensus 259 ~~~~~l~~~l~~------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 259 RGAAAVVDAFSK------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHHHT------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhHHHHHHHHhh------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 4 2333311 012678888999999887 377766 567999999999998876
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=5.1e-25 Score=192.02 Aligned_cols=266 Identities=17% Similarity=0.139 Sum_probs=144.1
Q ss_pred ceEEEEcCCCcccc----CCCccccCCCCccEEEecCCcceeeCCcccc-CCC----CCcEEEcCCCcccc----cCCCC
Q 039577 11 RVTALSLPNLTLGG----TIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQ----RLRIVDLSSGIIPG----SLPDD 77 (282)
Q Consensus 11 ~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~----~L~~L~l~~~~~~~----~~~~~ 77 (282)
++++|++++|.+.. .++..+..+++|++|++++|.+....+..+. .++ +|++|++++|.+.+ .++.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~- 107 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS- 107 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-
Confidence 44555555554432 2233344445555555555544332111111 122 45555555555432 1122
Q ss_pred ccCCCCCccEEEcccCeecccCCcC-----CcCCCCceEEEecCCCCCCCC---CCccccCCCCCcEEEecCccccccCC
Q 039577 78 TSGDCIMLRRLSFSFNKIRGWIPQK-----IGNLTELVELYLDGNNLQAGL---LPSVIFNSSNIQVIILYGNHLSGHLR 149 (282)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 149 (282)
.+..+++|++|++++|.+....+.. ....++|++|++++|.++... ++..+...++|++|++++|.+.....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 3445555555555555544211111 112345666666555542110 12233445666777776666543322
Q ss_pred CCc------CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcc-cccccccceEEe
Q 039577 150 SSI------YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSI-GNLSTSLENFYA 218 (282)
Q Consensus 150 ~~~------~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~~~~~~L~~L~l 218 (282)
..+ ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+.... .+...+ ..++ +|++|++
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~---~l~~~~~~~~~-~L~~L~L 263 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA---ELCPGLLHPSS-RLRTLWI 263 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH---HHHHHHTSTTC-CCCEEEC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH---HHHHHHhcCCC-CceEEEC
Confidence 211 144677777777766531 455566677788888887776642110 111111 1344 7888888
Q ss_pred ecccceec----CCccccCCccCccccc---------------------cccceeeccCCeeeee----cchhhhccCCC
Q 039577 219 SSCQLSGG----IPVGFGNLSNMIKCNL---------------------ESLFGLLLGGDALEGQ----IPTCLANLTSL 269 (282)
Q Consensus 219 ~~n~~~~~----~~~~~~~l~~l~~l~l---------------------~~l~~L~l~~n~~~~~----~~~~~~~l~~L 269 (282)
++|.+++. ++..+..+++|+.|++ ++|++|++++|.+++. ++..+..+++|
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 88887743 4555666777777761 4888899998888865 45667778999
Q ss_pred ceeeccCccCCC
Q 039577 270 ISLNLRSIRLNS 281 (282)
Q Consensus 270 ~~l~l~~n~~~~ 281 (282)
+++++++|.|++
T Consensus 344 ~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 344 LELQISNNRLED 355 (461)
T ss_dssp CEEECCSSBCHH
T ss_pred cEEEccCCcccc
Confidence 999999998763
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=161.87 Aligned_cols=227 Identities=17% Similarity=0.109 Sum_probs=171.6
Q ss_pred CCccEEEecCCcceeeC-C--ccccCCCCCcEEEcCCCcccccCCCCcc--CCCCCccEEEcccCeecccCC----cCCc
Q 039577 34 SFLVSLTSVAKSFYGTL-P--NELWQLQRLRIVDLSSGIIPGSLPDDTS--GDCIMLRRLSFSFNKIRGWIP----QKIG 104 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~~~-~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~ 104 (282)
..++.+.+..+.+.... . .....+++|++|++++|.+.+..|. .+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35778888877664321 1 0122457799999999999877776 44 889999999999999885433 2345
Q ss_pred CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc---cC-CCCc-CCCCccEEEeecCcceeeccc----hh
Q 039577 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG---HL-RSSI-YLPNLENLFLWQNNLCGIVPD----SI 175 (282)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~-~~~~-~~~~L~~L~l~~~~~~~~~~~----~l 175 (282)
.+++|++|++++|.+ ....+..+..+++|++|++++|.+.. .. ...+ .+++|++|++++|.++ .++. .+
T Consensus 143 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred hccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence 689999999999998 44555678889999999999998653 22 2222 6889999999999987 4443 24
Q ss_pred hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCee
Q 039577 176 CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDAL 255 (282)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~ 255 (282)
..+++|++|++++|.+.+..|.....+ ..++ +|++|++++|.++ .+|..+. ++|++|++++|.+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~----~~~~-~L~~L~Ls~N~l~-~lp~~~~----------~~L~~L~Ls~N~l 284 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRC----MWSS-ALNSLNLSFAGLE-QVPKGLP----------AKLRVLDLSSNRL 284 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSC----CCCT-TCCCEECCSSCCC-SCCSCCC----------SCCSCEECCSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhc----cCcC-cCCEEECCCCCCC-chhhhhc----------CCCCEEECCCCcC
Confidence 677999999999999986554422111 1124 8999999999998 7777652 5799999999999
Q ss_pred eeecchhhhccCCCceeeccCccCCC
Q 039577 256 EGQIPTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 256 ~~~~~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
++ +|. +..+++|+.+++++|+|+.
T Consensus 285 ~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 285 NR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-Cch-hhhCCCccEEECcCCCCCC
Confidence 95 344 7888999999999999986
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.5e-20 Score=149.51 Aligned_cols=185 Identities=22% Similarity=0.279 Sum_probs=144.1
Q ss_pred CeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCC
Q 039577 2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81 (282)
Q Consensus 2 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (282)
|.+|.. ..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..
T Consensus 9 gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 81 (251)
T 3m19_A 9 GCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDD 81 (251)
T ss_dssp SSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTT
T ss_pred ceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhcc
Confidence 456643 5678999999886 5676554 68999999999998777777889999999999999997 455447888
Q ss_pred CCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEE
Q 039577 82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENL 160 (282)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L 160 (282)
+++|++|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+....+..+ .+++|+.|
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 999999999999988655566788899999999999884 3333446778888888888888876666555 67888888
Q ss_pred EeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577 161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194 (282)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 194 (282)
++++|.+++..+..+..+++|++|++++|.+...
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888888744444667778888888888877643
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=161.22 Aligned_cols=228 Identities=18% Similarity=0.069 Sum_probs=171.7
Q ss_pred CCceEEEEcCCCccccC-CCc--cccCCCCccEEEecCCcceeeCCccc--cCCCCCcEEEcCCCcccccCCC---CccC
Q 039577 9 HRRVTALSLPNLTLGGT-IPP--HIGNLSFLVSLTSVAKSFYGTLPNEL--WQLQRLRIVDLSSGIIPGSLPD---DTSG 80 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~---~~~~ 80 (282)
...++.+.+.++.+... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578899988876532 111 12235679999999999998888877 8899999999999999754441 1335
Q ss_pred CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCC---CCCccccCCCCCcEEEecCccccccCCC---Cc-C
Q 039577 81 DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG---LLPSVIFNSSNIQVIILYGNHLSGHLRS---SI-Y 153 (282)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~-~ 153 (282)
.+++|++|++++|.+....+..+..+++|++|++++|.+... ..+..+..+++|++|++++|.++..... .+ .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999866667888999999999999986221 1122346788999999999998633221 12 5
Q ss_pred CCCccEEEeecCcceeeccchhhCC---CCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcc
Q 039577 154 LPNLENLFLWQNNLCGIVPDSICNA---SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230 (282)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 230 (282)
+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. + +|++|++++|.+++ +|.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--------~lp~~~~--~-~L~~L~Ls~N~l~~-~~~- 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--------QVPKGLP--A-KLRVLDLSSNRLNR-APQ- 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--------SCCSCCC--S-CCSCEECCSCCCCS-CCC-
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--------chhhhhc--C-CCCEEECCCCcCCC-Cch-
Confidence 7999999999999986657666655 69999999999998 3333332 3 89999999999984 333
Q ss_pred ccCCccCccccccccceeeccCCeeee
Q 039577 231 FGNLSNMIKCNLESLFGLLLGGDALEG 257 (282)
Q Consensus 231 ~~~l~~l~~l~l~~l~~L~l~~n~~~~ 257 (282)
+.. +++|+.|++++|.+++
T Consensus 290 ~~~--------l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDE--------LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTS--------CCCCSCEECSSTTTSC
T ss_pred hhh--------CCCccEEECcCCCCCC
Confidence 333 2778999999998874
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.1e-20 Score=154.46 Aligned_cols=192 Identities=18% Similarity=0.227 Sum_probs=156.9
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|+++++.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+. .++ .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS--AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEE
Confidence 4689999999998864 44 58889999999999998874 444 889999999999999986 444 57889999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+.+ ++. +..+++|++|++++|.++. .+. +..+++|+.|++++|.+....+ ...+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC
Confidence 999999884 443 8889999999999998843 443 7788999999999998875443 227899999999999987
Q ss_pred eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~ 225 (282)
.++. +..+++|++|++++|.+++. + .+..++ +|+.|++++|.+++
T Consensus 187 -~~~~-l~~l~~L~~L~L~~N~l~~~--------~-~l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 -DISP-LASLPNLIEVHLKNNQISDV--------S-PLANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp -CCGG-GGGCTTCCEEECTTSCCCBC--------G-GGTTCT-TCCEEEEEEEEEEC
T ss_pred -cChh-hcCCCCCCEEEccCCccCcc--------c-cccCCC-CCCEEEccCCeeec
Confidence 5554 77889999999999988743 2 256676 99999999999873
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=155.97 Aligned_cols=195 Identities=19% Similarity=0.231 Sum_probs=149.7
Q ss_pred ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL 109 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (282)
...+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.. + ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence 3467889999999988863 54 5788999999999999886 4554 7888999999999998874 3 357888999
Q ss_pred eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (282)
++|++++|.++. ++. +..+++|++|++++|.+....+ ...+++|+.|++++|.++ .++. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCC
Confidence 999999998844 443 7788899999999988875543 226888999999999887 5554 778889999999999
Q ss_pred ccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG 257 (282)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~ 257 (282)
.+++ ++. +..++ +|++|++++|.+++.. . +.. +++|+.|++++|.+++
T Consensus 184 ~l~~--------~~~-l~~l~-~L~~L~L~~N~l~~~~-~-l~~--------l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISD--------ISP-LASLP-NLIEVHLKNNQISDVS-P-LAN--------TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCC--------CGG-GGGCT-TCCEEECTTSCCCBCG-G-GTT--------CTTCCEEEEEEEEEEC
T ss_pred ccCc--------Chh-hcCCC-CCCEEEccCCccCccc-c-ccC--------CCCCCEEEccCCeeec
Confidence 8863 222 55666 8999999998887433 2 433 3678888888888874
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.5e-24 Score=182.68 Aligned_cols=254 Identities=16% Similarity=0.144 Sum_probs=186.0
Q ss_pred CCceEEEEcCCCccccC----CCccccCCCCccEEEecCCcc---eeeCCccc-------cCCCCCcEEEcCCCccccc-
Q 039577 9 HRRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKSF---YGTLPNEL-------WQLQRLRIVDLSSGIIPGS- 73 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~l~~~~~~~~- 73 (282)
.+++++|++++|.+... ++..+..+++|++|++++|.+ .+.+|..+ ..+++|+.|++++|.+.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 46799999999998765 334577899999999998643 34445444 6899999999999998742
Q ss_pred ---CCCCccCCCCCccEEEcccCeecccCCcC----CcCC---------CCceEEEecCCCCCCCCCC---ccccCCCCC
Q 039577 74 ---LPDDTSGDCIMLRRLSFSFNKIRGWIPQK----IGNL---------TELVELYLDGNNLQAGLLP---SVIFNSSNI 134 (282)
Q Consensus 74 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~~~~~~~~---~~~~~~~~L 134 (282)
++. .+..+++|++|++++|.+....+.. +..+ ++|++|++++|.++...++ ..+..+++|
T Consensus 111 ~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 344 5678899999999999987432222 3333 8999999999998433444 355678899
Q ss_pred cEEEecCccccc-----cCCCCc-CCCCccEEEeecCcce----eeccchhhCCCCCcEEeccCcccceecCCCCCCCCC
Q 039577 135 QVIILYGNHLSG-----HLRSSI-YLPNLENLFLWQNNLC----GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204 (282)
Q Consensus 135 ~~L~l~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 204 (282)
++|++++|.+.. ..+..+ .+++|+.|++++|.++ ..+|..+..+++|++|++++|.+++.... .++.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~ 266 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---AVVD 266 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH---HHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH---HHHH
Confidence 999999998862 222244 7899999999999985 46777888999999999999998754211 2344
Q ss_pred ccc--ccccccceEEeeccccee----cCCccc-cCCccCccccccccceeeccCCeeeeecc--hhhh-ccCCCceeec
Q 039577 205 SIG--NLSTSLENFYASSCQLSG----GIPVGF-GNLSNMIKCNLESLFGLLLGGDALEGQIP--TCLA-NLTSLISLNL 274 (282)
Q Consensus 205 ~~~--~~~~~L~~L~l~~n~~~~----~~~~~~-~~l~~l~~l~l~~l~~L~l~~n~~~~~~~--~~~~-~l~~L~~l~l 274 (282)
.+. .++ +|++|++++|.+++ .+|..+ .+ +++|+.|++++|.+++..+ ..+. .+++++..++
T Consensus 267 ~l~~~~~~-~L~~L~L~~n~i~~~g~~~l~~~l~~~--------l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEK--------MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHTCSSC-CCCEEECCSSCCBHHHHHHHHHHHHHH--------CTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred HHhhccCC-CeEEEECcCCcCCHHHHHHHHHHHHhc--------CCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 442 366 99999999999986 355544 22 3688999999999997663 3322 3444444444
Q ss_pred c
Q 039577 275 R 275 (282)
Q Consensus 275 ~ 275 (282)
.
T Consensus 338 ~ 338 (386)
T 2ca6_A 338 D 338 (386)
T ss_dssp C
T ss_pred h
Confidence 3
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.9e-20 Score=148.08 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=147.1
Q ss_pred eCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-ecccCCcCCcCCCCceEEEecC-CCCCCCCCCc
Q 039577 49 TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQKIGNLTELVELYLDG-NNLQAGLLPS 126 (282)
Q Consensus 49 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~ 126 (282)
.+|. + ..+|+.|++++|.++ .++...+..+++|++|++++|. +....+..+..+++|++|++++ |.++ ...+.
T Consensus 25 ~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~ 99 (239)
T 2xwt_C 25 RIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPD 99 (239)
T ss_dssp SCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTT
T ss_pred ccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHH
Confidence 4565 3 248899999999987 5555578889999999999886 7744445678889999999988 8773 23335
Q ss_pred cccCCCCCcEEEecCccccccCCCCcCCCCcc---EEEeecC-cceeeccchhhCCCCCc-EEeccCcccceecCCCCCC
Q 039577 127 VIFNSSNIQVIILYGNHLSGHLRSSIYLPNLE---NLFLWQN-NLCGIVPDSICNASEVT-ILELSKNLFSCLIPNTSGV 201 (282)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~ 201 (282)
.+..+++|++|++++|.++..+ ....+++|+ .|++++| .+++..+..+..+++|+ +|++++|.++. +|
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~----- 172 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ----- 172 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC-----
T ss_pred HhCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC-----
Confidence 6778889999999998887643 322566676 9999998 77744444577888999 99999998872 22
Q ss_pred CCCcccccccccceEEeeccc-ceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577 202 FPNSIGNLSTSLENFYASSCQ-LSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278 (282)
Q Consensus 202 l~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 278 (282)
......+ +|++|++++|. +++..+..+..+ .++|+.|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 173 --~~~~~~~-~L~~L~L~~n~~l~~i~~~~~~~l-------~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 173 --GYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGV-------YSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp --TTTTTTC-EEEEEECTTCTTCCEECTTTTTTC-------SBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred --HhhcCCC-CCCEEEcCCCCCcccCCHHHhhcc-------ccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 2222334 79999999984 774444555553 156788888889888 45544 56788888888764
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.2e-20 Score=154.78 Aligned_cols=238 Identities=18% Similarity=0.174 Sum_probs=167.2
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE-EEcc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR-LSFS 91 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~ 91 (282)
++++.++++++ .+|..+ .+++++|+|++|.+...-+..+.++++|++|++++|.+.+.++...|..++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45777887775 577665 3689999999999985444568899999999999999876777767888888776 4556
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC-ccccccCCCCc-C-CCCccEEEeecCcce
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG-NHLSGHLRSSI-Y-LPNLENLFLWQNNLC 168 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~-~-~~~L~~L~l~~~~~~ 168 (282)
.|.+....+..+..+++|++|++++|.++. ..+..+....++..+++.+ +.+.......+ . ...++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 688885556778899999999999998843 2233344556777888865 44554444444 3 356888999999997
Q ss_pred eeccchhhCCCCCcEEeccC-cccceecCCCCCCCCC-cccccccccceEEeecccceecCCc-cccCCccCcccccccc
Q 039577 169 GIVPDSICNASEVTILELSK-NLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESL 245 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l 245 (282)
.++.......+++++++.+ |.++ .+|. .+..++ +|++|++++|+++ .+|. .+.++..|+.+++.++
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~--------~i~~~~f~~l~-~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLE--------ELPNDVFHGAS-GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCC--------CCCTTTTTTEE-CCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTC
T ss_pred -CCChhhccccchhHHhhccCCccc--------CCCHHHhccCc-ccchhhcCCCCcC-ccChhhhccchHhhhccCCCc
Confidence 6666655667889999975 4554 3443 456676 9999999999998 5554 4444444433332222
Q ss_pred ceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577 246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSI 277 (282)
Q Consensus 246 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 277 (282)
+.+|. +..+++|+.++++++
T Consensus 237 -----------~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 237 -----------KKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp -----------CCCCC-TTTCCSCCEEECSCH
T ss_pred -----------CcCCC-chhCcChhhCcCCCC
Confidence 24453 667778888777653
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=8e-20 Score=163.71 Aligned_cols=214 Identities=24% Similarity=0.259 Sum_probs=124.0
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.++ .+|. .+++|++|++++|.+. .+|. .+++|+.|++++|.+. .+|. .+++|+.|
T Consensus 60 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L 126 (622)
T 3g06_A 60 PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKL 126 (622)
T ss_dssp CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEE
T ss_pred CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEE
Confidence 467888888888776 4554 4678888888888776 3554 5677777777777665 3443 23445555
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccc-----------------cCCCCCcEEEecCccccccCCCC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI-----------------FNSSNIQVIILYGNHLSGHLRSS 151 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~ 151 (282)
++++|.+.. +|.. +++|++|++++|.++. +|..+ ..+++|+.|++++|.+...+. .
T Consensus 127 ~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~ 199 (622)
T 3g06_A 127 WIFGNQLTS-LPVL---PPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-L 199 (622)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C
T ss_pred ECCCCCCCc-CCCC---CCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-c
Confidence 555544442 3322 2344444444443321 11111 122556666666666553221 1
Q ss_pred c------------------CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577 152 I------------------YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL 213 (282)
Q Consensus 152 ~------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L 213 (282)
. .+++|+.|++++|.++ .+| ..+++|++|++++|.++ .+|. .++ +|
T Consensus 200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~--------~lp~---~~~-~L 263 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT--------SLPM---LPS-GL 263 (622)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS--------CCCC---CCT-TC
T ss_pred cchhhEEECcCCcccccCCCCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC--------cCCc---ccc-cC
Confidence 1 1244555555555554 344 23455666666666554 2332 223 77
Q ss_pred ceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccC
Q 039577 214 ENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLT 267 (282)
Q Consensus 214 ~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~ 267 (282)
+.|++++|.++ .+|..+..+ ++|+.|++++|.+++..|..+..++
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l--------~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHL--------SSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGS--------CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhc--------cccCEEEecCCCCCCcCHHHHHhcc
Confidence 88888888777 666666554 6788999999999988888776543
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.2e-19 Score=145.52 Aligned_cols=180 Identities=21% Similarity=0.223 Sum_probs=141.5
Q ss_pred CCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEE
Q 039577 58 QRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVI 137 (282)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 137 (282)
...+.++++++.+. .+|. .+ .++++.|++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEE
Confidence 46788999999986 7776 33 36899999999999876666788999999999999998 44445567888999999
Q ss_pred EecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceE
Q 039577 138 ILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF 216 (282)
Q Consensus 138 ~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L 216 (282)
++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..++ +|++|
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~-~L~~L 160 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLT-NLQTL 160 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCT-TCCEE
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCc-CCCEE
Confidence 999999987776666 78999999999999884434446788999999999998873322 2455666 89999
Q ss_pred EeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577 217 YASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ 258 (282)
Q Consensus 217 ~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~ 258 (282)
++++|.+++..+..+..+ ++|+.|++++|.+.+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l--------~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRL--------GKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTC--------TTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCC--------CCCCEEEeeCCceeCC
Confidence 999999885555455554 5788888899988755
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.4e-22 Score=169.54 Aligned_cols=235 Identities=17% Similarity=0.150 Sum_probs=179.8
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceee-CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGT-LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++.+++.+|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+..+. .+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEE
Confidence 6899999999999876655 66799999999999998765 677788999999999999998755555 67789999999
Q ss_pred EcccC-eeccc-CCcCCcCCCCceEEEecCC-CCCCCCCCccccCCC-CCcEEEecCcc--cc-ccCCCCc-CCCCccEE
Q 039577 89 SFSFN-KIRGW-IPQKIGNLTELVELYLDGN-NLQAGLLPSVIFNSS-NIQVIILYGNH--LS-GHLRSSI-YLPNLENL 160 (282)
Q Consensus 89 ~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~-~~~~L~~L 160 (282)
++++| .+.+. ++..+..+++|++|++++| .++...++..+..++ +|++|++++|. ++ ...+..+ .+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99999 56642 4555778899999999999 773322455677888 99999999994 33 1222333 68999999
Q ss_pred EeecCc-ceeeccchhhCCCCCcEEeccCcc-cceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCc
Q 039577 161 FLWQNN-LCGIVPDSICNASEVTILELSKNL-FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI 238 (282)
Q Consensus 161 ~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 238 (282)
++++|. +++..+..+..+++|++|++++|. +. +. .+ ..+..++ +|++|++++| ++ ...+..+.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~---~~---~~-~~l~~~~-~L~~L~l~~~-i~---~~~~~~l~--- 292 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII---PE---TL-LELGEIP-TLKTLQVFGI-VP---DGTLQLLK--- 292 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC---GG---GG-GGGGGCT-TCCEEECTTS-SC---TTCHHHHH---
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC---HH---HH-HHHhcCC-CCCEEeccCc-cC---HHHHHHHH---
Confidence 999998 665667788889999999999995 22 11 11 2456677 9999999998 33 22233221
Q ss_pred cccccccceeeccCCeeeeecchhhhc
Q 039577 239 KCNLESLFGLLLGGDALEGQIPTCLAN 265 (282)
Q Consensus 239 ~l~l~~l~~L~l~~n~~~~~~~~~~~~ 265 (282)
.++..|++++|.+++..|..+..
T Consensus 293 ----~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 293 ----EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ----HHSTTSEESCCCSCCTTCSSCSS
T ss_pred ----hhCcceEEecccCccccCCcccc
Confidence 34777889999999888776654
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=5.3e-23 Score=173.89 Aligned_cols=246 Identities=18% Similarity=0.163 Sum_probs=173.9
Q ss_pred CCceEEEEcCCCccccCCC----ccccCCC-CccEEEecCCcceeeCCccccCC-----CCCcEEEcCCCcccccCCCC-
Q 039577 9 HRRVTALSLPNLTLGGTIP----PHIGNLS-FLVSLTSVAKSFYGTLPNELWQL-----QRLRIVDLSSGIIPGSLPDD- 77 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~- 77 (282)
+.++++|++++|.+.+..+ .++..++ +|++|++++|.+....+..+..+ ++|++|++++|.+.+..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 5669999999999987655 6777888 99999999999987655555554 99999999999987433320
Q ss_pred --ccCCC-CCccEEEcccCeecccCCcC----CcC-CCCceEEEecCCCCCCCC---CCccccCCC-CCcEEEecCcccc
Q 039577 78 --TSGDC-IMLRRLSFSFNKIRGWIPQK----IGN-LTELVELYLDGNNLQAGL---LPSVIFNSS-NIQVIILYGNHLS 145 (282)
Q Consensus 78 --~~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~---~~~~~~~~~-~L~~L~l~~~~~~ 145 (282)
.+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.++... ++..+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 13344 89999999999988543333 333 368999999999884211 223334454 9999999999997
Q ss_pred ccCCCCc-----CC-CCccEEEeecCcceee----ccchhhC-CCCCcEEeccCcccceecCCCCCCCCCcccccccccc
Q 039577 146 GHLRSSI-----YL-PNLENLFLWQNNLCGI----VPDSICN-ASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLE 214 (282)
Q Consensus 146 ~~~~~~~-----~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 214 (282)
...+..+ .. ++|+.|++++|.+.+. ++..+.. .++|++|++++|.+++..+. .+...+..++ +|+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---~l~~~~~~l~-~L~ 256 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---NLKLLKDSLK-HLQ 256 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---HHHHTTTTTT-TCS
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH---HHHHHHhcCC-Ccc
Confidence 6554333 34 5999999999998742 4555555 45999999999998854321 2333445566 899
Q ss_pred eEEeecccceecCCccccCCc-cCccccccccceeeccCCeeeeecc
Q 039577 215 NFYASSCQLSGGIPVGFGNLS-NMIKCNLESLFGLLLGGDALEGQIP 260 (282)
Q Consensus 215 ~L~l~~n~~~~~~~~~~~~l~-~l~~l~l~~l~~L~l~~n~~~~~~~ 260 (282)
+|++++|.+.+..+..+..+. .+. .+++|+.||+++|.+.+..+
T Consensus 257 ~L~L~~n~l~~i~~~~~~~l~~~~~--~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 257 TVYLDYDIVKNMSKEQCKALGAAFP--NIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEEEEHHHHTTCCHHHHHHHHTTST--TCCEEEEECTTSCBCCGGGC
T ss_pred EEEeccCCccccCHHHHHHHHHHhc--cCCceEEEecCCCcCCCcch
Confidence 999999986533222221111 001 13678999999999986643
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5.1e-19 Score=156.76 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=85.8
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
+++.|++++|.+++ +|..+. ++|++|++++|.+. .+| ..+++|+.|++++|.+. .+|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEEC
Confidence 45555555555543 444332 45555555555554 344 23455555555555554 2443 222 5555555
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 170 (282)
++|.+.+ +|. .+++|+.|++++|.++. +|. .+++|+.|++++|.++..+. +. ++|+.|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-c
Confidence 5555553 333 34555555555555522 332 23455555555555443222 22 44555555555544 4
Q ss_pred ccchhhCCCCC-------cEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577 171 VPDSICNASEV-------TILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF 231 (282)
Q Consensus 171 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 231 (282)
+|. +.. +| ++|++++|.++ .+|..+..++ +|+.|++++|.+++.+|..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--------~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT--------HIPENILSLD-PTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC--------CCCGGGGGSC-TTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce--------ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHH
Confidence 443 221 33 45555555444 3333344444 45555555554444444433
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.3e-18 Score=154.12 Aligned_cols=195 Identities=22% Similarity=0.308 Sum_probs=145.7
Q ss_pred CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577 35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL 114 (282)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 114 (282)
+|+.|++++|.+.+ +|..+. ++|+.|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 89999999998875 776553 78999999999987 677 346889999999998885 666 554 8999999
Q ss_pred cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577 115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194 (282)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 194 (282)
++|.++. +|. .+++|+.|++++|.++..+ . .+++|+.|++++|.++ .+|. +. ++|++|++++|.++ .
T Consensus 128 s~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM--LPE---LPALLEYINADNNQLTMLP-E--LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC--CCC---CCTTCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC--CCC---cCccccEEeCCCCccCcCC-C--cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCC-c
Confidence 9998844 665 5788999999999887643 3 3688999999999887 5776 54 78999999999887 2
Q ss_pred cCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccC
Q 039577 195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLT 267 (282)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~ 267 (282)
+|. ++..+...+..|+.|++++|.++ .+|..+..+ ++|+.|++++|.+++.+|..+..+.
T Consensus 195 lp~----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l--------~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 195 LPA----VPVRNHHSEETEIFFRCRENRIT-HIPENILSL--------DPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCC----CC--------CCEEEECCSSCCC-CCCGGGGGS--------CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hhh----HHHhhhcccccceEEecCCCcce-ecCHHHhcC--------CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 221 22111111113489999999888 677766654 6788888899999888888877653
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.3e-18 Score=134.07 Aligned_cols=173 Identities=23% Similarity=0.241 Sum_probs=116.2
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+.++.+++.++ .+|..+ .++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 46677777664 345433 358888899888887544455678888888888888886 56654677888888888888
Q ss_pred CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeec
Q 039577 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIV 171 (282)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 171 (282)
|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 8877433444677888888888888773 2233345666777777777777665544444 5666777777666554
Q ss_pred cchhhCCCCCcEEeccCcccceecCC
Q 039577 172 PDSICNASEVTILELSKNLFSCLIPN 197 (282)
Q Consensus 172 ~~~l~~~~~L~~L~l~~~~~~~~~~~ 197 (282)
+.+++++.|++..|.+++.+|+
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ----cCCCCHHHHHHHHHhCCceeec
Confidence 2234566666666666654444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=136.02 Aligned_cols=164 Identities=22% Similarity=0.250 Sum_probs=136.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 568999999999998666667889999999999999998544455678999999999999997 6666578899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+.. .+++|+.++++.|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCC
Confidence 99999998544455788999999999999984 3334457789999999999997642 3678899999999999
Q ss_pred eeccchhhCCCC
Q 039577 169 GIVPDSICNASE 180 (282)
Q Consensus 169 ~~~~~~l~~~~~ 180 (282)
+.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 889987765544
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1e-20 Score=169.80 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=49.3
Q ss_pred cccccceEEee----cccceec-----CCccccCCccCcccc-------------------ccccceeeccCCeeeee-c
Q 039577 209 LSTSLENFYAS----SCQLSGG-----IPVGFGNLSNMIKCN-------------------LESLFGLLLGGDALEGQ-I 259 (282)
Q Consensus 209 ~~~~L~~L~l~----~n~~~~~-----~~~~~~~l~~l~~l~-------------------l~~l~~L~l~~n~~~~~-~ 259 (282)
++ +|++|+++ .|.+++. ++..+..+++|+.|+ +++|++|++++|.+++. +
T Consensus 402 ~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 402 LK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp CC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred CC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 44 78888886 3455432 222244566666665 35689999999998864 4
Q ss_pred chhhhccCCCceeeccCccCCC
Q 039577 260 PTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 260 ~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+..+..+++|++|++++|.|++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHhcCcccCeeeccCCCCcH
Confidence 4566788999999999998763
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=7.4e-18 Score=141.64 Aligned_cols=218 Identities=17% Similarity=0.131 Sum_probs=158.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCc-cccCCCCCcE-EEcCCCcccccCCCCccCCCCCcc
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRI-VDLSSGIIPGSLPDDTSGDCIMLR 86 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~-L~l~~~~~~~~~~~~~~~~l~~L~ 86 (282)
+.++++|++++|.++..-+.+|.++++|++|+|++|.+.+.+|. .+.++++++. +.+..|.+. .++...+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccc
Confidence 57899999999999754445789999999999999998766654 5678888876 556668886 66655889999999
Q ss_pred EEEcccCeecccCCcCCcCCCCceEEEecCC-CCCCCCCCccccCC-CCCcEEEecCccccccCCCCcCCCCccEEEeec
Q 039577 87 RLSFSFNKIRGWIPQKIGNLTELVELYLDGN-NLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ 164 (282)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (282)
+|++.+|.+....+..+.....+..+++.++ .++. ..+..+... ..++.|++++|.++...+..+...+|+++.+.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred cccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 9999999988544445566778889999764 3422 122234444 468899999999987766666677899999976
Q ss_pred -Ccceeeccc-hhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc
Q 039577 165 -NNLCGIVPD-SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN 241 (282)
Q Consensus 165 -~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~ 241 (282)
|.++ .+|. .+..+++|++|++++|.++ .+|... +. +|++|.+.++...+.+|. +..+++|+.++
T Consensus 187 ~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~--------~lp~~~--~~-~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH--------SLPSYG--LE-NLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp CTTCC-CCCTTTTTTEECCSEEECTTSCCC--------CCCSSS--CT-TCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred CCccc-CCCHHHhccCcccchhhcCCCCcC--------ccChhh--hc-cchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 5554 7765 5688899999999999987 333322 22 677777766543345553 55555444443
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.5e-20 Score=166.32 Aligned_cols=267 Identities=13% Similarity=0.019 Sum_probs=138.7
Q ss_pred CCceEEEEcCCCccc----cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc-------------
Q 039577 9 HRRVTALSLPNLTLG----GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP------------- 71 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------- 71 (282)
.+++++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+..+++|+.++++.+...
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 367888888888775 2344445577888888888877653 4445555666666666532211
Q ss_pred -------------ccCCCCccCCCCCccEEEcccCeecccCC-cCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEE
Q 039577 72 -------------GSLPDDTSGDCIMLRRLSFSFNKIRGWIP-QKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVI 137 (282)
Q Consensus 72 -------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 137 (282)
..++. .+..+++|++|++++|.+.+... ..+..+++|++|++.+ .+....++..+..+++|++|
T Consensus 270 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence 11222 33345555566655555332111 1134455555555542 22111122222344556666
Q ss_pred EecC-----------ccccccCCCC-c-CCCCccEEEeecCcceeeccchhhC-CCCCcEEecc----CcccceecCCCC
Q 039577 138 ILYG-----------NHLSGHLRSS-I-YLPNLENLFLWQNNLCGIVPDSICN-ASEVTILELS----KNLFSCLIPNTS 199 (282)
Q Consensus 138 ~l~~-----------~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~~~~~~ 199 (282)
++.. +.++...... . .+++|+.|+++.+.+++..+..+.. +++|++|++. .+.+++...+
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-- 425 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-- 425 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH--
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH--
Confidence 6652 2222111111 1 3566666666555555433333433 5666666665 3333321000
Q ss_pred CCCCCcccccccccceEEeeccc--ceecCCcccc-CCccCcccc-----------------ccccceeeccCCeeeeec
Q 039577 200 GVFPNSIGNLSTSLENFYASSCQ--LSGGIPVGFG-NLSNMIKCN-----------------LESLFGLLLGGDALEGQI 259 (282)
Q Consensus 200 ~~l~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~l~~l~~l~-----------------l~~l~~L~l~~n~~~~~~ 259 (282)
..++..+..++ +|++|+++.|. +++..+..+. .+++|+.|+ +++|++|++++|.+++..
T Consensus 426 ~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 426 NGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 00111123344 56666665332 3322222221 234444443 478999999999987653
Q ss_pred -chhhhccCCCceeeccCccCCC
Q 039577 260 -PTCLANLTSLISLNLRSIRLNS 281 (282)
Q Consensus 260 -~~~~~~l~~L~~l~l~~n~~~~ 281 (282)
+.....+++|++|++++|++++
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHhcCccCeeECcCCcCCH
Confidence 4455689999999999999986
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.1e-17 Score=149.73 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=105.7
Q ss_pred cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577 31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110 (282)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (282)
..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.. + ..+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 455666777777666642 33 4566777777777777665 3332 5666777777777776663 2 2566667777
Q ss_pred EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189 (282)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (282)
.|++++|.+.. + ..+..+++|+.|++++|.+... ..+ .+++|+.|++++|.+.+ ++. +..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCC
Confidence 77777776632 3 2456667777777777766543 223 56677777777777663 332 566677777777777
Q ss_pred ccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225 (282)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~ 225 (282)
.+++ ++ .+..++ +|+.|++++|.+.+
T Consensus 186 ~i~~--------l~-~l~~l~-~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISD--------LR-ALAGLK-NLDVLELFSQECLN 211 (605)
T ss_dssp CCCB--------CG-GGTTCT-TCSEEECCSEEEEC
T ss_pred CCCC--------Ch-HHccCC-CCCEEEccCCcCcC
Confidence 6652 21 344555 67777777776663
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.7e-17 Score=135.88 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=119.2
Q ss_pred ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL 109 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (282)
+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.. ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 3456777888887777753 33 3667788888888887775 3443 6677788888888877763 33 36777888
Q ss_pred eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (282)
++|++++|.++. + ..+..+++|+.|++++|.+... ..+ .+++|+.|++++|.++ .++. +..+++|++|++++
T Consensus 115 ~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 115 KSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp CEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred CEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCC
Confidence 888888887733 3 3466777888888888777644 233 6778888888888776 4443 67778888888888
Q ss_pred cccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
|.+++ ++ .+..++ +|+.|++++|.++
T Consensus 188 N~i~~--------l~-~l~~l~-~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 188 NHISD--------LR-ALAGLK-NLDVLELFSQECL 213 (291)
T ss_dssp SCCCB--------CG-GGTTCT-TCSEEEEEEEEEE
T ss_pred CcCCC--------Ch-hhccCC-CCCEEECcCCccc
Confidence 87763 22 255566 7888888888776
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3e-17 Score=134.40 Aligned_cols=170 Identities=21% Similarity=0.273 Sum_probs=144.3
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
.+++++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+. .++ .+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG--GGTTCTTCCEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCC-CCh--hhccCCCCCEE
Confidence 4679999999998864 34 48889999999999999985 444 889999999999999986 444 47899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (282)
++++|.+.. + ..+..+++|++|++++|.++. + ..+..+++|+.|++++|.+....+ ...+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 999999884 3 567889999999999999844 4 568889999999999999986554 227999999999999997
Q ss_pred eeccchhhCCCCCcEEeccCcccce
Q 039577 169 GIVPDSICNASEVTILELSKNLFSC 193 (282)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~ 193 (282)
.++. +..+++|+.|++++|.+..
T Consensus 192 -~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 -DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred -CChh-hccCCCCCEEECcCCcccC
Confidence 5654 7889999999999998874
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=9.4e-17 Score=126.03 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=125.2
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+.++++++.++ .+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCC
Confidence 46888888875 5676554 6899999999999876666788999999999999999744444 889999999999999
Q ss_pred CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+....+..+ .+++|+.+++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999843334468899999999999998 44456678889999999999999987776666 7899999999999886
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.4e-16 Score=125.86 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=103.2
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+.++.+++.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 45777776664 5565443 78888888888887666777778888888888888875 66654667788888888888
Q ss_pred CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
|.+....+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8877433444677788888888888774 366666666677777777666664444334 4566666666666554
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=2.6e-16 Score=123.53 Aligned_cols=152 Identities=24% Similarity=0.341 Sum_probs=121.7
Q ss_pred cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecC
Q 039577 37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116 (282)
Q Consensus 37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 116 (282)
+.++++++.+. .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56788877776 4666554 68999999999987 55555788899999999999998876678888999999999999
Q ss_pred CCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccce
Q 039577 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193 (282)
Q Consensus 117 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 193 (282)
|.++. ..+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 90 N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98843 233346778999999999999987777666 78899999999999884445567788899999999998863
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.5e-16 Score=125.61 Aligned_cols=136 Identities=22% Similarity=0.253 Sum_probs=118.2
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
++++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence 678999999999999888888999999999999999997444455678999999999999997 6666578899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH 147 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 147 (282)
++++|.+. .+|..+..+++|++|++++|.++. ..+..+..+++|+.|++.+|.+...
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99999999 688889999999999999999843 3335678899999999999987643
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5.5e-17 Score=125.17 Aligned_cols=154 Identities=13% Similarity=0.055 Sum_probs=118.3
Q ss_pred ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL 109 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (282)
...+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 356778889999888887 566 5788889999999988664 333 56788899999999888886667778888999
Q ss_pred eEEEecCCCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188 (282)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (282)
++|++++|.+ ....+..+..+++|++|++++|. +... +....+++|+.|++++|.++ .++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i-~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBC-BGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCcc-CcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeC
Confidence 9999998887 43345667788899999999887 5433 32227888999999999887 555 677888999999999
Q ss_pred cccc
Q 039577 189 NLFS 192 (282)
Q Consensus 189 ~~~~ 192 (282)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 9876
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=2.3e-16 Score=123.74 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=78.7
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCC-ccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
++++++++.++ .+|..+. +.++.|++++|.+....+ ..+..+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 36677776664 3555442 345667777776665433 23456666666666666665 3333355566666666666
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
+|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6665543333355556666666666555 22223344444444545444444443333333 344444444444443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5.3e-17 Score=125.29 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=122.2
Q ss_pred ccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCC
Q 039577 54 LWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN 133 (282)
Q Consensus 54 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 133 (282)
...+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+ ....+..+..+++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTT
T ss_pred hhhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCcc-CcccChhhcCCCC
Confidence 356889999999999986 666 47889999999999997662 44678899999999999988 4334566888999
Q ss_pred CcEEEecCccccccCCCCc-CCCCccEEEeecCc-ceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccc
Q 039577 134 IQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN-LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLST 211 (282)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (282)
|++|++++|.+....+..+ .+++|+.|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~--------~~-~l~~l~- 181 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD--------YR-GIEDFP- 181 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC--------CT-TGGGCS-
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC--------hH-HhccCC-
Confidence 9999999999886555545 78999999999998 54 666 57889999999999998873 33 456677
Q ss_pred ccceEEeecccce
Q 039577 212 SLENFYASSCQLS 224 (282)
Q Consensus 212 ~L~~L~l~~n~~~ 224 (282)
+|++|++++|.+.
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 8999999999876
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.9e-17 Score=143.49 Aligned_cols=191 Identities=21% Similarity=0.252 Sum_probs=148.2
Q ss_pred CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577 35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL 114 (282)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 114 (282)
.+..+.+..+.+.... .+..+.+|+.|++++|.+. .++ .+..+++|+.|++++|.+.+ ++. +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEEC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEEC
Confidence 4444455555554332 2457899999999999986 565 47889999999999999885 444 889999999999
Q ss_pred cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577 115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194 (282)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 194 (282)
++|.+.. ++ .+..+++|+.|++++|.+... +....+++|+.|++++|.++ .+ ..+..+++|+.|++++|.+.+.
T Consensus 95 s~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC--CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC--Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCc
Confidence 9999843 44 688899999999999998753 22227899999999999997 44 5678899999999999988743
Q ss_pred cCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577 195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ 258 (282)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~ 258 (282)
++ +..++ +|+.|++++|.+.+ ++ .+..+ ++|+.|++++|.+.+.
T Consensus 169 --------~~-l~~l~-~L~~L~Ls~N~i~~-l~-~l~~l--------~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 --------VP-LAGLT-KLQNLYLSKNHISD-LR-ALAGL--------KNLDVLELFSQECLNK 212 (605)
T ss_dssp --------GG-GTTCT-TCCEEECCSSCCCB-CG-GGTTC--------TTCSEEECCSEEEECC
T ss_pred --------hh-hccCC-CCCEEECcCCCCCC-Ch-HHccC--------CCCCEEEccCCcCcCC
Confidence 22 56676 99999999999874 33 34443 6788889999988854
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=123.58 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=131.0
Q ss_pred ccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEec
Q 039577 36 LVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLD 115 (282)
Q Consensus 36 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 115 (282)
-++++++++.+. .+|..+. ..++.|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 458999999887 4776553 4678999999999854455468899999999999999996556689999999999999
Q ss_pred CCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577 116 GNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194 (282)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 194 (282)
+|.+ ....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..|..+..+++|++|++++|.+...
T Consensus 90 ~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCC-CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCcc-CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999 44445568889999999999999998877777 889999999999999866688888999999999999998854
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.4e-16 Score=134.32 Aligned_cols=178 Identities=24% Similarity=0.254 Sum_probs=126.6
Q ss_pred CcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCc-CCCCceEEEecCCCCCCCCCCccccCCCCCcEEE
Q 039577 60 LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG-NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVII 138 (282)
Q Consensus 60 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 138 (282)
-+.++++++.+. .+|. .+ ...++.|++++|.+....+..+. .+++|++|++++|.++ ...+..+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 367889888886 6776 22 34688899999988865455565 7889999999998883 33345577888888899
Q ss_pred ecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcc----ccccccc
Q 039577 139 LYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSI----GNLSTSL 213 (282)
Q Consensus 139 l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~----~~~~~~L 213 (282)
+++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+++ +|..+ ..++ +|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--------l~~~~~~~~~~l~-~L 165 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--------FPVELIKDGNKLP-KL 165 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--------CCGGGTC----CT-TC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--------eCHHHhcCcccCC-cC
Confidence 88888876666555 78888888888888875556777888888888888888873 33322 3455 88
Q ss_pred ceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577 214 ENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG 257 (282)
Q Consensus 214 ~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~ 257 (282)
+.|++++|.+++..+..+..++.+ .++.|++++|.+..
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~------~l~~l~l~~N~~~C 203 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAW------VKNGLYLHNNPLEC 203 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHH------HHTTEECCSSCEEC
T ss_pred CEEECCCCCCCccCHHHhhhccHh------hcceEEecCCCccC
Confidence 888888888873332344443221 14678888887763
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.2e-16 Score=134.92 Aligned_cols=174 Identities=21% Similarity=0.159 Sum_probs=122.7
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
+.++++++.++ .+|..+. +.++.|++++|.+....+..+. .+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 46777777775 3565443 4578888888888765555555 7888888888888886 4554467788888888888
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc----CCCCccEEEeecCcc
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI----YLPNLENLFLWQNNL 167 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~ 167 (282)
+|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+...+...+ .+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8887754455677788888888888887 33345567778888888888888775544332 377888888888888
Q ss_pred eeecc-chhhCCCC--CcEEeccCcccc
Q 039577 168 CGIVP-DSICNASE--VTILELSKNLFS 192 (282)
Q Consensus 168 ~~~~~-~~l~~~~~--L~~L~l~~~~~~ 192 (282)
+ .+| ..+..++. ++.|++++|.+.
T Consensus 176 ~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 K-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred C-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 7 444 34555554 367888887765
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.4e-17 Score=132.04 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=69.1
Q ss_pred ccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCC
Q 039577 54 LWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN 133 (282)
Q Consensus 54 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 133 (282)
+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++. ++.. .. ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN--LNGI-PS-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC--CTTC-CC-SS
T ss_pred hhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC--cCcc-cc-Cc
Confidence 334445555555554443 333 23444555555555554442 222 4445555555555554422 2221 11 44
Q ss_pred CcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577 134 IQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212 (282)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (282)
|+.|++++|.+.... .+ .+++|+.|++++|.++ .++ .+..+++|++|++++|.+++. ..+..++ +
T Consensus 108 L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i~~~---------~~l~~l~-~ 173 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT---------GGLTRLK-K 173 (263)
T ss_dssp CCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTSCCCBC---------TTSTTCC-C
T ss_pred ccEEEccCCccCCCh--hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCCcCcch---------HHhccCC-C
Confidence 555555555544321 12 4555555555555554 333 344555555555555555422 1233344 5
Q ss_pred cceEEeecccce
Q 039577 213 LENFYASSCQLS 224 (282)
Q Consensus 213 L~~L~l~~n~~~ 224 (282)
|+.|++++|.+.
T Consensus 174 L~~L~l~~N~~~ 185 (263)
T 1xeu_A 174 VNWIDLTGQKCV 185 (263)
T ss_dssp CCEEEEEEEEEE
T ss_pred CCEEeCCCCccc
Confidence 555666555554
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=1e-18 Score=156.83 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=45.9
Q ss_pred CceEEEEcCCCccccCCCcccc-CCCCccEEEecCCc-ceee-CCccccCCCCCcEEEcCCCcccccCCC---CccCCCC
Q 039577 10 RRVTALSLPNLTLGGTIPPHIG-NLSFLVSLTSVAKS-FYGT-LPNELWQLQRLRIVDLSSGIIPGSLPD---DTSGDCI 83 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~ 83 (282)
+++++|+++++.+.+..+..+. .+++|+.|++++|. +... ++....++++|++|++++|.+.+..+. .....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5677777777766554444443 46677777777763 3221 233333566777777776665422111 0122444
Q ss_pred CccEEEcccCe
Q 039577 84 MLRRLSFSFNK 94 (282)
Q Consensus 84 ~L~~L~l~~~~ 94 (282)
+|++|++.+|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 56666555543
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.4e-18 Score=155.94 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=30.5
Q ss_pred ccccceeeccCCeeeeecchhh-hccCCCceeeccCccCC
Q 039577 242 LESLFGLLLGGDALEGQIPTCL-ANLTSLISLNLRSIRLN 280 (282)
Q Consensus 242 l~~l~~L~l~~n~~~~~~~~~~-~~l~~L~~l~l~~n~~~ 280 (282)
+++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 4568888898888876655555 66889999999998875
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.2e-17 Score=151.06 Aligned_cols=191 Identities=18% Similarity=0.094 Sum_probs=101.6
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEec-----CCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCC
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSV-----AKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCI 83 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 83 (282)
.+++++|++.++.+.. .+..+....+|+.+.+. .|.+. ..+..+..+..|+.|++++|.+. .++. .+..++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGGGCC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhcCCC
Confidence 3678888888887754 33333222333333322 22222 34566777888888888888886 6776 455788
Q ss_pred CccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEe
Q 039577 84 MLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFL 162 (282)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l 162 (282)
+|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+.+|++|++++|.+... +..+ .+++|+.|++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGV 323 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEEC
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeC
Confidence 8888888888888 67888888888888888888884 4777788888888888888887743 4445 7888888888
Q ss_pred ecCcceeeccchhhCCC-CCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecc
Q 039577 163 WQNNLCGIVPDSICNAS-EVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC 221 (282)
Q Consensus 163 ~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n 221 (282)
++|.+++..|..+.... ....+++++|.+++.+|. .++.|+++.|
T Consensus 324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--------------~l~~l~l~~n 369 (727)
T 4b8c_D 324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--------------ERRFIEINTD 369 (727)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------------C---------
T ss_pred CCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--------------ccceeEeecc
Confidence 88888766665554322 123466777777654432 4566666655
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=4.7e-16 Score=125.38 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=119.9
Q ss_pred eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
++.++++++.+++ ++ .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++. +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECC
Confidence 4445666666653 22 4667788888888888776 355 5777888888888888876 4443 6778888888888
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceee
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGI 170 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 170 (282)
+|.+.+ ++.. .. ++|++|++++|.++. ++ .+..+++|+.|++++|.++... .+ .+++|+.|++++|.+++
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~- 164 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN- 164 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB-
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc-
Confidence 888774 4432 23 788888888888743 33 4777888888888888877542 33 67888888888888873
Q ss_pred ccchhhCCCCCcEEeccCccccee
Q 039577 171 VPDSICNASEVTILELSKNLFSCL 194 (282)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~ 194 (282)
. ..+..+++|++|++++|.+...
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHhccCCCCCEEeCCCCcccCC
Confidence 3 5567788888888888887643
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.2e-16 Score=116.53 Aligned_cols=107 Identities=24% Similarity=0.240 Sum_probs=52.9
Q ss_pred CCceEEEEcCCCccc-cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLG-GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
++++++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+.+|. .+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCE
Confidence 345555555555554 34454455555555555555555432 3444555555555555555432332 3334555555
Q ss_pred EEcccCeecccCC--cCCcCCCCceEEEecCCCC
Q 039577 88 LSFSFNKIRGWIP--QKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 88 L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~ 119 (282)
|++++|.+.+ ++ ..+..+++|++|++++|.+
T Consensus 100 L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 100 LNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp EECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGG
T ss_pred EeccCCccCc-chhHHHHhcCCCCCEEEeeCCcC
Confidence 5555555442 22 3344455555555555544
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=5e-15 Score=111.13 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=66.6
Q ss_pred CCCcEEEcCCCccc-ccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcE
Q 039577 58 QRLRIVDLSSGIIP-GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQV 136 (282)
Q Consensus 58 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 136 (282)
++|+.|++++|.+. +.+|. .+..+++|++|++++|.+.. + ..+..+++|++|++++|.+ ....|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCC-CSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcC-chHHHHHHhhCCCCCE
Confidence 44444444444443 23333 33444455555555444442 2 3344455555555555554 2223333444555555
Q ss_pred EEecCccccccCC-CCc-CCCCccEEEeecCcceeeccc----hhhCCCCCcEEeccCcccc
Q 039577 137 IILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVPD----SICNASEVTILELSKNLFS 192 (282)
Q Consensus 137 L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~ 192 (282)
|++++|.++.... ..+ .+++|+.|++++|.++ ..+. .+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555543221 222 5666777777777666 4443 5666777777777777665
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1.5e-15 Score=111.68 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=59.8
Q ss_pred CCceEEEEcCCCccc-cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577 9 HRRVTALSLPNLTLG-GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR 87 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 87 (282)
++++++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.+|. .+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCE
Confidence 355666666666665 45555556666666666666655533 4455566666666666665533333 3444556666
Q ss_pred EEcccCeeccc-CCcCCcCCCCceEEEecCCCC
Q 039577 88 LSFSFNKIRGW-IPQKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 88 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~ 119 (282)
|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 66665555531 124455555555555555555
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2.3e-14 Score=109.95 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=86.1
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCc-cccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
++++++++.+ +.+|..+. .+|++|++++|.+....+. .+..+++|+.|++++|.+.+..|. .+..+++|++|+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence 5778888877 35666554 3788888888877644333 366788888888888887644344 67777788888888
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccc
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS 145 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 145 (282)
+|.+.+..+..+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcC-CeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8777765555577777777777777776 3334445555566666666655554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=5.6e-18 Score=150.63 Aligned_cols=182 Identities=15% Similarity=0.044 Sum_probs=135.8
Q ss_pred cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-------------ccccCCCCccCCCCCccEEE-cccCeec
Q 039577 31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-------------IPGSLPDDTSGDCIMLRRLS-FSFNKIR 96 (282)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~ 96 (282)
..+++|+.|++++|.+. .+|..+.++++|+.|++++|. ..+..|. .+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccc
Confidence 46788999999998886 688888899999999986653 2222233 556677777777 4444322
Q ss_pred ccCCc------CCc--CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 97 GWIPQ------KIG--NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 97 ~~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
. ++. .+. ....|+.|++++|.++. +|. +..+++|+.|++++|.++ .+|..+ .+++|+.|++++|.+
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 1 110 000 01358999999999854 676 888999999999999998 445556 899999999999999
Q ss_pred eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228 (282)
Q Consensus 168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 228 (282)
+ .+| .++.+++|++|++++|.+++.. .|..+..++ +|+.|++++|.+++..|
T Consensus 499 ~-~lp-~l~~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~-~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 499 E-NVD-GVANLPRLQELLLCNNRLQQSA------AIQPLVSCP-RLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CCG-GGTTCSSCCEEECCSSCCCSSS------TTGGGGGCT-TCCEEECTTSGGGGSSS
T ss_pred C-CCc-ccCCCCCCcEEECCCCCCCCCC------CcHHHhcCC-CCCEEEecCCcCCCCcc
Confidence 8 577 7889999999999999987332 156788888 99999999999985433
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=4.9e-18 Score=150.99 Aligned_cols=195 Identities=18% Similarity=0.144 Sum_probs=103.8
Q ss_pred cCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-------------ecccCCcCCcCCCCceEEE-ecCCCCC
Q 039577 55 WQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-------------IRGWIPQKIGNLTELVELY-LDGNNLQ 120 (282)
Q Consensus 55 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~ 120 (282)
..++.|+.|++++|.+. .+|. .++.+++|+.|++.+|. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34566666666666664 5555 55666666666654432 1122233344445555555 3332210
Q ss_pred CCCCCc------ccc--CCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577 121 AGLLPS------VIF--NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192 (282)
Q Consensus 121 ~~~~~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (282)
. ++. .+. ....|+.|++++|.++.. +....+++|+.|++++|.++ .+|..++.+++|++|++++|.++
T Consensus 424 ~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 D--LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred h--hhhhhhhcccccccCccCceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 0 000 000 012466666666666543 23125666666666666666 66666666666666666666665
Q ss_pred eecCCCCCCCCCcccccccccceEEeecccceecC-CccccCCccCccccccccceeeccCCeeeeecch---hhhccCC
Q 039577 193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI-PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT---CLANLTS 268 (282)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~---~~~~l~~ 268 (282)
.+| .+..++ +|++|++++|.+++.. |..+..+ ++|+.|++++|.+++..+. .+..+|+
T Consensus 500 --------~lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l--------~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 500 --------NVD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSC--------PRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp --------CCG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGC--------TTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred --------CCc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcC--------CCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 233 455555 6666666666666443 5555543 4566666666666644331 2334566
Q ss_pred Cceee
Q 039577 269 LISLN 273 (282)
Q Consensus 269 L~~l~ 273 (282)
|+.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 66665
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=7.5e-14 Score=107.11 Aligned_cols=126 Identities=25% Similarity=0.371 Sum_probs=92.4
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+.++++++.++ .+|..+. ++|++|++++|.+. .+|..+..+++|+.|++++|.+. .++...|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 56888888775 5665443 58888888888887 57777888888888888888886 55554778888888888888
Q ss_pred CeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCCcEEEecCcccc
Q 039577 93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHLS 145 (282)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 145 (282)
|.+....+..+..+++|++|++++|.++. ++. .+..+++|+.|++.+|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCCCee
Confidence 88886555567788888888888887732 333 3555666666666666553
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=7.9e-14 Score=106.91 Aligned_cols=110 Identities=27% Similarity=0.375 Sum_probs=61.7
Q ss_pred CccEEEcccCeecccCCc-CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEE
Q 039577 84 MLRRLSFSFNKIRGWIPQ-KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLF 161 (282)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~ 161 (282)
++++|++++|.+....+. .+..+++|++|++++|.+ ....|..+..+++|++|++++|.+....+..+ .+++|+.|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 444555554444422121 144455555555555554 22233444555555555555555554444444 567777777
Q ss_pred eecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577 162 LWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194 (282)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 194 (282)
+++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777777766566667777777777777777643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.2e-14 Score=106.89 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCccEEEecCCcce-eeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEE
Q 039577 34 SFLVSLTSVAKSFY-GTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112 (282)
Q Consensus 34 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (282)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.+. .+ . .+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 56667777776665 455655566666666666666665 22 2 45556666666666666554344444445566666
Q ss_pred EecCCCCCCCCCCccccCCCCCcEEEecCcccc
Q 039577 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS 145 (282)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 145 (282)
++++|.++....+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 666655522001133344444444444444443
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=2.3e-15 Score=137.74 Aligned_cols=183 Identities=22% Similarity=0.240 Sum_probs=106.3
Q ss_pred CCccEEEecCCcceeeCCccccCCCCCcEEEcC-----CCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577 34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS-----SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 108 (282)
++++.|++..+.+.. .+..+.....|+.+.+. .|.+. ++...+..++.|+.|++++|.+. .++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 567777887776654 33333333333333322 23332 33336778888999999888887 67777778888
Q ss_pred ceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEecc
Q 039577 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187 (282)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 187 (282)
|++|++++|.++ .+|..+..+++|++|++++|.++ .++..+ .+++|+.|++++|.++ .+|..+..+++|++|+++
T Consensus 249 L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 249 LTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 999999888885 47777888888999999988888 445555 7888899999988886 788888888889999999
Q ss_pred CcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF 231 (282)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 231 (282)
+|.+++.+|. .+.........+++++|.+++.+|..+
T Consensus 325 ~N~l~~~~p~-------~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 325 GNPLEKQFLK-------ILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp TSCCCSHHHH-------HHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCccCCCChH-------HHhhcchhhhHHhhccCcccCcCcccc
Confidence 9888754332 343332133446788888887777644
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.3e-13 Score=102.04 Aligned_cols=127 Identities=26% Similarity=0.259 Sum_probs=77.3
Q ss_pred eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
.+.++++++.+. .+|..+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 456777777664 345433 257777888777776443444567777777777777775 4554356677777777777
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCCcEEEecCccc
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHL 144 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 144 (282)
+|.+.+..+..+..+++|++|++++|.++. ++. .+..+++|++|++++|.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCe
Confidence 777664333345666777777777766632 332 234445555555555544
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4.8e-13 Score=101.12 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=94.1
Q ss_pred CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
+.++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEE
Confidence 578999999999998665667789999999999999998554555789999999999999997 5665478899999999
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 119 (282)
++++|.+....+..+..+++|++|++++|.+
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999999854334467899999999999988
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=6.5e-13 Score=101.84 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=60.8
Q ss_pred cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecC
Q 039577 37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116 (282)
Q Consensus 37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 116 (282)
++++++++.+. .+|..+. ++|+.|++++|.+. .+|. .+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34555555554 3444332 45666666666654 4553 555556666666666655543334455555555555555
Q ss_pred CCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167 (282)
Q Consensus 117 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 167 (282)
|.++ ...+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5552 2222234444444444444444443333222 344444444444433
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.5e-14 Score=105.22 Aligned_cols=131 Identities=21% Similarity=0.172 Sum_probs=77.4
Q ss_pred ccCCCCccEEEecCCcceeeCCccccCCC-CCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCC-cCCC
Q 039577 30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQ-RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLT 107 (282)
Q Consensus 30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~ 107 (282)
+..+++|+.|++++|.+. .++. +..+. +|+.|++++|.+.+ + . .+..+++|++|++++|.+.. ++..+ ..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~-~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-D-GFPLLRRLKTLLVNNNRICR-IGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-C-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-c-ccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence 445566666666666665 3333 33333 66666666666652 3 2 45666667777776666663 34333 5666
Q ss_pred CceEEEecCCCCCCCCCCc--cccCCCCCcEEEecCccccccCCC---Cc-CCCCccEEEeecCcce
Q 039577 108 ELVELYLDGNNLQAGLLPS--VIFNSSNIQVIILYGNHLSGHLRS---SI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~ 168 (282)
+|++|++++|.++. +|. .+..+++|+.|++++|.+...+.. .+ .+++|+.|+++.|...
T Consensus 89 ~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777766632 443 455666777777777766533321 13 5677777777776654
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=2.3e-13 Score=113.19 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=140.4
Q ss_pred CCceEEEEcCCCccc--cCCCccccCCCCccEEEecCCcceeeCCccccC--------CCCCcEEEcCCCcccccCCCCc
Q 039577 9 HRRVTALSLPNLTLG--GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQ--------LQRLRIVDLSSGIIPGSLPDDT 78 (282)
Q Consensus 9 ~~~l~~l~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~~~~~ 78 (282)
.+++++|+|++|.+. ..... .++.++.+.+..+.+. +..+.. |++|+.+++.. .+. .++...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 367889999998876 21111 2223444444444221 233445 88888888888 665 666667
Q ss_pred cCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCC--C-CCCCCccccCCCCCc--------------------
Q 039577 79 SGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL--Q-AGLLPSVIFNSSNIQ-------------------- 135 (282)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~-~~~~~~~~~~~~~L~-------------------- 135 (282)
|..+++|+.+++..|.+....+..|....++..+....... . ...-...+.+...|+
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 88888888888888776644445566666666665544210 0 000111222333333
Q ss_pred ------EEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccc
Q 039577 136 ------VIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIG 207 (282)
Q Consensus 136 ------~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 207 (282)
.+.+.+.-.. .....+ .+++|+.+++++|.++.--...+..+.+|+++++.+| +.. +++ ..+.
T Consensus 200 ~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~------~aF~ 270 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQ------RVFS 270 (329)
T ss_dssp CGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECT------TTTT
T ss_pred CccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehH------HHhh
Confidence 3333222110 000001 2678888888888777333445777888888888877 432 221 1344
Q ss_pred ccccccc-eEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeec
Q 039577 208 NLSTSLE-NFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274 (282)
Q Consensus 208 ~~~~~L~-~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l 274 (282)
.+. +|+ ++++.+ .++...+..|..| ++|+.+++..|.++...+..|.++++|+.+..
T Consensus 271 ~~~-~L~~~l~l~~-~l~~I~~~aF~~c--------~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCG-RLAGTLELPA-SVTAIEFGAFMGC--------DNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCT-TCCEEEEECT-TCCEECTTTTTTC--------TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCh-hccEEEEEcc-cceEEchhhhhCC--------ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 555 788 888877 5554445566665 56778888888888666678999999988764
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=5.2e-13 Score=100.84 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=79.5
Q ss_pred cccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCC-ccccCC
Q 039577 53 ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLP-SVIFNS 131 (282)
Q Consensus 53 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 131 (282)
.+.++.+|+.|++++|.+. .++. .....++|++|++++|.+.+ + ..+..+++|++|++++|.++. +| ..+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR--IGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc--cCcchhhcC
Confidence 3556788888888888876 5543 33333488888888888774 3 566777788888888777732 33 223556
Q ss_pred CCCcEEEecCccccccCC-CCc-CCCCccEEEeecCcceeeccch----hhCCCCCcEEeccCccc
Q 039577 132 SNIQVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVPDS----ICNASEVTILELSKNLF 191 (282)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~ 191 (282)
++|++|++++|.+..... ..+ .+++|+.|++++|.++ ..|.. +..+++|++|+++.|..
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666666543222 122 4555666666665554 44432 44555555555555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=3e-15 Score=115.51 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=90.5
Q ss_pred CCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCC
Q 039577 124 LPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVF 202 (282)
Q Consensus 124 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 202 (282)
+|..+..+++|++|++++|.+... + .+ .+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ +
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~--------l 108 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--------L 108 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--------H
T ss_pred hhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--------C
Confidence 333566677777777777776653 3 34 6777888888888776 667666666788888888887762 3
Q ss_pred CCcccccccccceEEeecccceecCC-ccccCCccCccccccccceeeccCCeeeeecch----------hhhccCCCce
Q 039577 203 PNSIGNLSTSLENFYASSCQLSGGIP-VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT----------CLANLTSLIS 271 (282)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~----------~~~~l~~L~~ 271 (282)
| .+..++ +|+.|++++|.+++..+ ..+.. +++|+.|++++|.+++..|. .+..+++|+.
T Consensus 109 ~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~--------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 109 S-GIEKLV-NLRVLYMSNNKITNWGEIDKLAA--------LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp H-HHHHHH-HSSEEEESEEECCCHHHHHHHTT--------TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred C-ccccCC-CCCEEECCCCcCCchhHHHHHhc--------CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 3 455666 88888888887763211 12333 26678888888888765443 3778888888
Q ss_pred eeccCccCCC
Q 039577 272 LNLRSIRLNS 281 (282)
Q Consensus 272 l~l~~n~~~~ 281 (282)
+| +|.++.
T Consensus 179 Ld--~~~i~~ 186 (198)
T 1ds9_A 179 LD--GMPVDV 186 (198)
T ss_dssp EC--CGGGTT
T ss_pred EC--CcccCH
Confidence 87 666653
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=4e-13 Score=111.77 Aligned_cols=221 Identities=13% Similarity=-0.010 Sum_probs=130.4
Q ss_pred CCCccEEEecCCcce--eeCCccccCCCCCcEEEcCCCcccccCCCCccCC--------CCCccEEEcccCeecccCCcC
Q 039577 33 LSFLVSLTSVAKSFY--GTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD--------CIMLRRLSFSFNKIRGWIPQK 102 (282)
Q Consensus 33 l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~ 102 (282)
+++|++|+|++|.+. ..... .++.++.+.+..+ .+|...|.. +++|+.+++.. .+.......
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 566777777776665 21111 1122334444443 344446777 99999999988 666444556
Q ss_pred CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccc----cccCCCCc-CCCCcc-------------------
Q 039577 103 IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL----SGHLRSSI-YLPNLE------------------- 158 (282)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~-~~~~L~------------------- 158 (282)
|..+++|+.+++..|.++. ..+..|....++..+....... .......+ .+..|+
T Consensus 120 F~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred hhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 8899999999999998732 2334455555555555443211 11111112 333443
Q ss_pred -------EEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577 159 -------NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF 231 (282)
Q Consensus 159 -------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 231 (282)
.+.+.++............+++|+++++.+|.++.... ..+..+. +|+++++.+| +....+..|
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-------~aF~~~~-~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD-------FTFAQKK-YLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-------TTTTTCT-TCCEEECCTT-CCEECTTTT
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH-------hhhhCCC-CCCEEECCcc-cceehHHHh
Confidence 22222211110001111236899999999988773322 1355565 8999999987 664445567
Q ss_pred cCCccCccccccccc-eeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577 232 GNLSNMIKCNLESLF-GLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 232 ~~l~~l~~l~l~~l~-~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~ 280 (282)
..+.+ |+ .+++.+ .++...+..|.+|++|+.+++++|.++
T Consensus 270 ~~~~~--------L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 270 SNCGR--------LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTCTT--------CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred hCChh--------ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 77654 55 556655 555444688999999999999988775
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.4e-12 Score=96.61 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=84.6
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
+.++++++++.++ .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 4568899998886 4676553 78999999999998766777888999999999999987 666656788899999999
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNL 119 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 119 (282)
++|.+....+..+..+++|++|++++|.+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99988854344578888899999988877
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=2.6e-15 Score=115.87 Aligned_cols=104 Identities=23% Similarity=0.262 Sum_probs=47.4
Q ss_pred CCccEEEecCCcceeeCCc------cccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCC
Q 039577 34 SFLVSLTSVAKSFYGTLPN------ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT 107 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 107 (282)
..++.++++.+.+.+..|. .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444444444444444333 4445555555555555554 233 3444555555555555544 3343333344
Q ss_pred CceEEEecCCCCCCCCCCccccCCCCCcEEEecCccc
Q 039577 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144 (282)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 144 (282)
+|++|++++|.++. ++ .+..+++|+.|++++|.+
T Consensus 94 ~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 94 TLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp HCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEEC
T ss_pred cCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcC
Confidence 55555555554422 22 233344444444444443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=7.6e-12 Score=94.20 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=81.2
Q ss_pred EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577 13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF 92 (282)
Q Consensus 13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 92 (282)
+.++++++.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 67888888874 6776554 78899999999888766777888889999999998886 56665677888888888888
Q ss_pred CeecccCCc-CCcCCCCceEEEecCCCC
Q 039577 93 NKIRGWIPQ-KIGNLTELVELYLDGNNL 119 (282)
Q Consensus 93 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 119 (282)
|.+.. ++. .+..+++|++|++++|.+
T Consensus 91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKS-IPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred Cccce-eCHHHhccccCCCEEEeCCCCc
Confidence 88884 444 477888888888888877
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=9.4e-12 Score=93.33 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=74.4
Q ss_pred CcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577 134 IQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL 213 (282)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L 213 (282)
.+.++++++.++..+ ..+ .++++.|++++|.+++..|..+..+++|++|++++|.+++..+ ..+..++ +|
T Consensus 11 ~~~l~~s~n~l~~ip-~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~f~~l~-~L 80 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-------GVFDKLT-QL 80 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCT-TC
T ss_pred CCEEEeCCCCcCccC-ccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-------hhccCCC-CC
Confidence 467888888777543 333 4778888888888875556667788888888888888873322 2345566 88
Q ss_pred ceEEeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577 214 ENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ 258 (282)
Q Consensus 214 ~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~ 258 (282)
++|++++|.+++..+..+..+ ++|+.|++++|.+...
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNL--------KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCBCTT
T ss_pred CEEECCCCccCEeCHHHhcCC--------CCCCEEEeCCCCCCCC
Confidence 888888888874444445554 5677788888877643
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=1.6e-09 Score=92.29 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=78.1
Q ss_pred cccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577 29 HIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108 (282)
Q Consensus 29 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 108 (282)
+|.++ +|+.+.+..+ +...-...+.+ .+|+.+.+.. .+. .+....|..+.+|+.+++..|.+.. ++...-....
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceE-echhhEeecc
Confidence 44443 5777766544 33222233334 3566766665 333 4454466667777777776666553 3333222466
Q ss_pred ceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188 (282)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (282)
|+.+.+..+ ++. .-...|..+.+|+.+.+..+ +.......+.-.+|+.+.+.++ ++.--..++..+++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hhe-ehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCC
Confidence 666666543 311 12234555566666666543 2333333332355666666433 2212234455566666666665
Q ss_pred ccc
Q 039577 189 NLF 191 (282)
Q Consensus 189 ~~~ 191 (282)
+.+
T Consensus 281 ~~~ 283 (401)
T 4fdw_A 281 STF 283 (401)
T ss_dssp SCC
T ss_pred ccc
Confidence 544
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=1.1e-09 Score=93.25 Aligned_cols=238 Identities=12% Similarity=0.132 Sum_probs=157.2
Q ss_pred ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577 11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90 (282)
Q Consensus 11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 90 (282)
+++++.+..+ ++..-..+|.++ +|+.+.+.. .+...-+..+.+|.+|+.+++..|.+. .++...|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEe
Confidence 5777777665 443334456664 799999875 454444567888999999999998886 77765665 589999998
Q ss_pred ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCC-ccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577 91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLP-SVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC 168 (282)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 168 (282)
..+ +.......|..+++|+.+++..+ ++. ++ ..|.. .+|+.+.+.. .+.......+ .+.+|+.+.+.++...
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~--I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VST--IGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCE--ECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccC--cccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCcccc
Confidence 754 44334556788899999999875 322 33 23444 7899998844 3444555556 7889999999887653
Q ss_pred -----eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccc
Q 039577 169 -----GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLE 243 (282)
Q Consensus 169 -----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~ 243 (282)
.--...+..+++|+.+.+..+ +... ++ ..+..+. +|+.+.+..+ ++......|..+
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-~~------~aF~~c~-~L~~l~lp~~-l~~I~~~aF~~~--------- 345 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPES-IRIL-GQ------GLLGGNR-KVTQLTIPAN-VTQINFSAFNNT--------- 345 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCTT-CCEE-CT------TTTTTCC-SCCEEEECTT-CCEECTTSSSSS---------
T ss_pred CCcccEECHHHhhCCccCCeEEeCCc-eEEE-hh------hhhcCCC-CccEEEECcc-ccEEcHHhCCCC---------
Confidence 133456778889999988743 4321 11 1344455 8999998544 543334455553
Q ss_pred ccceeeccCCeeeeecchhhhccC-CCceeeccCcc
Q 039577 244 SLFGLLLGGDALEGQIPTCLANLT-SLISLNLRSIR 278 (282)
Q Consensus 244 ~l~~L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~ 278 (282)
+|+.+++.+|.........|..++ +++.+.+..+.
T Consensus 346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 566777777766644445566664 67777776554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=9e-14 Score=117.39 Aligned_cols=177 Identities=16% Similarity=0.080 Sum_probs=106.3
Q ss_pred CCCccEEEcccCeecccCCcC----Cc-CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc----
Q 039577 82 CIMLRRLSFSFNKIRGWIPQK----IG-NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI---- 152 (282)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 152 (282)
.+.|++|++++|.+....... +. ..+.|++|++++|.++..........+.+|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 457888888888876422221 22 236788888888877321122222334678888888887754322222
Q ss_pred --CCCCccEEEeecCccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceec
Q 039577 153 --YLPNLENLFLWQNNLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGG 226 (282)
Q Consensus 153 --~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~ 226 (282)
..+.|++|++++|.++. .++..+...++|++|++++|.+++... ..++..+...+ +|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~-~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNR-QLQELNVAYNGAGDT 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCS-CCCEEECCSSCCCHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCC-CcCeEECCCCCCCHH
Confidence 24678888888887763 234445667788888888888764321 12333445555 788888888877643
Q ss_pred CCccccCCccCccccccccceeeccCCeeeeecchhhhcc
Q 039577 227 IPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANL 266 (282)
Q Consensus 227 ~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l 266 (282)
....+... +. ..++|++|++++|.+++.....+..+
T Consensus 227 g~~~l~~~--L~--~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 227 AALALARA--AR--EHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHH--HH--HCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHHH--HH--hCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 22222110 00 12567888888888876655555543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=1.8e-10 Score=86.63 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=53.8
Q ss_pred cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCc-CCcCCCCceEEEec
Q 039577 37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQ-KIGNLTELVELYLD 115 (282)
Q Consensus 37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 115 (282)
+.++++++.+. .+|..+. ++|+.|++++|.+. .++...+..+++|++|++++|.+.. ++. .+..+++|++|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence 45666666553 4554442 56666666666665 3332255566666666666666553 332 34555666666666
Q ss_pred CCCCCCCCCCc-cccCCCCCcEEEecCcccc
Q 039577 116 GNNLQAGLLPS-VIFNSSNIQVIILYGNHLS 145 (282)
Q Consensus 116 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 145 (282)
+|.++. ++. .+..+++|++|++.+|.+.
T Consensus 90 ~N~l~~--l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKS--IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCC--CCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccce--eCHHHhccccCCCEEEeCCCCcc
Confidence 665522 222 2444555555555555443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1e-13 Score=117.01 Aligned_cols=193 Identities=14% Similarity=0.064 Sum_probs=114.5
Q ss_pred CCCCcEEEcCCCcccccCCCC---ccC-CCCCccEEEcccCeecccCCcCC-cCCCCceEEEecCCCCCCCCC---Cccc
Q 039577 57 LQRLRIVDLSSGIIPGSLPDD---TSG-DCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLL---PSVI 128 (282)
Q Consensus 57 l~~L~~L~l~~~~~~~~~~~~---~~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~ 128 (282)
++.|+.+++++|.+....... .+. ..++|++|++++|.+.......+ ..+++|++|++++|.++.... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999998875321110 112 23689999999888764322222 235678999999988732111 1111
Q ss_pred -cCCCCCcEEEecCccccccCC----CCc-CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCC
Q 039577 129 -FNSSNIQVIILYGNHLSGHLR----SSI-YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNT 198 (282)
Q Consensus 129 -~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 198 (282)
...++|++|++++|.++.... ..+ ..++|++|++++|.+... ++..+...++|++|++++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence 235779999999988764221 122 467899999999987632 34456667789999999998874321
Q ss_pred CCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceee--ccCCeee
Q 039577 199 SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL--LGGDALE 256 (282)
Q Consensus 199 ~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~--l~~n~~~ 256 (282)
..++..+...+ +|++|++++|.++......+..+..... ..++.+. +..+.+.
T Consensus 229 -~~l~~~L~~~~-~L~~L~Ls~N~i~~~g~~~L~~~~~~~~---~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 229 -LALARAAREHP-SLELLHLYFNELSSEGRQVLRDLGGAAE---GGARVVVSLTEGTAVS 283 (372)
T ss_dssp -HHHHHHHHHCS-SCCEEECTTSSCCHHHHHHHHHCC---------CEEECCCC----CH
T ss_pred -HHHHHHHHhCC-CCCEEeccCCCCCHHHHHHHHHHhcCCC---ccchhhHhhhcCCccC
Confidence 13334454556 8999999999887544444433222110 1255565 5555554
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=6.1e-11 Score=99.42 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=68.5
Q ss_pred cccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhh--CCCCCcEEeccCc--ccceecCCCCCCC
Q 039577 127 VIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSIC--NASEVTILELSKN--LFSCLIPNTSGVF 202 (282)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~~~~~~~~l 202 (282)
.+..+++|+.|.+.++.-. ..+. +..++|+.|++..+.+.......+. .+++|++|++..+ ...+.. ....+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence 3344566666666655211 1111 2356666666666655422222222 4566666666421 111100 00011
Q ss_pred CCcc--cccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeec----chhhhccCCCceeeccC
Q 039577 203 PNSI--GNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQI----PTCLANLTSLISLNLRS 276 (282)
Q Consensus 203 ~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~----~~~~~~l~~L~~l~l~~ 276 (282)
...+ ...| +|+.|++.+|.++...+..+...+. +++|++|+++.|.+.+.. +..+..+++|++|++++
T Consensus 243 ~~~l~~~~~p-~Lr~L~L~~~~i~~~~~~~la~a~~-----~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 243 RPLFSKDRFP-NLKWLGIVDAEEQNVVVEMFLESDI-----LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGGSCTTTCT-TCCEEEEESCTTHHHHHHHHHHCSS-----GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHhcCCCC-CcCEEeCCCCCCchHHHHHHHhCcc-----CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 1111 1234 6777777666655332222222111 356677777777666542 23334566777777777
Q ss_pred ccCC
Q 039577 277 IRLN 280 (282)
Q Consensus 277 n~~~ 280 (282)
|.|+
T Consensus 317 n~i~ 320 (362)
T 2ra8_A 317 NYLS 320 (362)
T ss_dssp BBCC
T ss_pred CcCC
Confidence 7665
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=8.3e-10 Score=92.31 Aligned_cols=103 Identities=22% Similarity=0.188 Sum_probs=85.1
Q ss_pred EEEcCCC-ccccCCCccccCCCCccEEEecC-CcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577 14 ALSLPNL-TLGGTIPPHIGNLSFLVSLTSVA-KSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91 (282)
Q Consensus 14 ~l~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 91 (282)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..+..+++|+.|++++|.+.+ ++...|..+++|++|+++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCC
Confidence 4688887 776 5888 99999999999996 99987666788999999999999999984 444488999999999999
Q ss_pred cCeecccCCcCCcCCCCceEEEecCCCCC
Q 039577 92 FNKIRGWIPQKIGNLTELVELYLDGNNLQ 120 (282)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 120 (282)
+|.+.. +|..+.....|+.|++.+|.+.
T Consensus 89 ~N~l~~-~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALES-LSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccce-eCHHHcccCCceEEEeeCCCcc
Confidence 999995 5554333334999999999874
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=8.5e-10 Score=92.25 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=74.3
Q ss_pred EEEecCc-cccccCCCCc-CCCCccEEEeec-CcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577 136 VIILYGN-HLSGHLRSSI-YLPNLENLFLWQ-NNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212 (282)
Q Consensus 136 ~L~l~~~-~~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (282)
.++.+++ .++.. |. + .+.+|+.|++++ |.+++..+..+..+++|++|++++|.+++..+. .+..++ +
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------~~~~l~-~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-------AFHFTP-R 81 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-------GGGSCS-C
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-------HhcCCc-C
Confidence 4566666 66654 34 5 778899999986 888755556788889999999999988855433 566677 8
Q ss_pred cceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577 213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG 257 (282)
Q Consensus 213 L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~ 257 (282)
|+.|+|++|.+++..+..+..+ +|+.|++.+|.+..
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~---------~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGL---------SLQELVLSGNPLHC 117 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSC---------CCCEEECCSSCCCC
T ss_pred CCEEeCCCCccceeCHHHcccC---------CceEEEeeCCCccC
Confidence 9999999999884333333332 27888888888873
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.79 E-value=6.5e-07 Score=76.07 Aligned_cols=105 Identities=15% Similarity=0.065 Sum_probs=55.1
Q ss_pred CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc------------cc------
Q 039577 10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI------------IP------ 71 (282)
Q Consensus 10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------~~------ 71 (282)
..|+++.+..+ ++..-..+|.++++|+.+++.++ +...-...+..|.+|+.+.+..+- ..
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 35666666543 43323446667777777777543 221222344455555554443210 00
Q ss_pred --ccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCC
Q 039577 72 --GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGN 117 (282)
Q Consensus 72 --~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 117 (282)
..+....|..+.+|+.+.+..+... .....|..+.+|+.+.+..+
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence 0112225667788888888654322 22344666777777777654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2e-09 Score=90.28 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=76.8
Q ss_pred CCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccc--cCCCCCcEEEecCc--ccccc-----CCC
Q 039577 80 GDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI--FNSSNIQVIILYGN--HLSGH-----LRS 150 (282)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~--~~~~~-----~~~ 150 (282)
..+|+|+.|.+.++.-. .++. + .+++|++|++..+.++...+ ..+ ..+++|++|+++.+ ..... ...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 44566666666554211 1222 2 25666666666555421111 111 14566666665421 10000 001
Q ss_pred Cc---CCCCccEEEeecCcceeeccchhh---CCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577 151 SI---YLPNLENLFLWQNNLCGIVPDSIC---NASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224 (282)
Q Consensus 151 ~~---~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~ 224 (282)
.+ .+++|+.|++.+|.+....+..+. .+++|++|+++.|.+.+.... .++..+..++ +|++|++++|.++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~---~L~~~L~~l~-~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR---LLLDHVDKIK-HLKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH---HHHTTHHHHT-TCSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH---HHHhhcccCC-cceEEECCCCcCC
Confidence 11 368899999998887643333332 467899999999988754221 3333445566 8999999999877
Q ss_pred ec
Q 039577 225 GG 226 (282)
Q Consensus 225 ~~ 226 (282)
..
T Consensus 321 d~ 322 (362)
T 2ra8_A 321 DE 322 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=4.4e-09 Score=79.78 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCCccEEEeecC-ccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577 154 LPNLENLFLWQN-NLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228 (282)
Q Consensus 154 ~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 228 (282)
.+.|++|++++| .+.. .+...+...++|++|++++|.+.+... ..+...+...+ +|++|++++|.++....
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~---~~l~~~L~~n~-~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA---FALAEMLKVNN-TLKSLNVESNFISGSGI 110 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH---HHHHHHHHHCS-SCCEEECCSSCCCHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH---HHHHHHHHhCC-CcCEEECcCCcCCHHHH
Confidence 556666777666 5542 223344556677777777777653211 12223334444 67777777777663321
Q ss_pred ccccCCccCccccccccceeec--cCCeeeeec----chhhhccCCCceeeccCccCC
Q 039577 229 VGFGNLSNMIKCNLESLFGLLL--GGDALEGQI----PTCLANLTSLISLNLRSIRLN 280 (282)
Q Consensus 229 ~~~~~l~~l~~l~l~~l~~L~l--~~n~~~~~~----~~~~~~l~~L~~l~l~~n~~~ 280 (282)
..+... ++. .++|++|++ ++|.+++.. ...+...++|++|++++|.|+
T Consensus 111 ~~l~~~--L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEA--LQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHG--GGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHH--HHh--CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 111110 000 245777777 677777553 234555677888888887764
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.57 E-value=1.5e-05 Score=67.59 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=48.6
Q ss_pred eEEEEcCCCccccCCCccccCCCCccEEEecCCc---ceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577 12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS---FYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL 88 (282)
Q Consensus 12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 88 (282)
|+++.+..+ ++..-..+|.++.+|+.+.+..+. +...-...+..|.+|+.+.+..+ ++ .+....+..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhcccccc
Confidence 555555543 332234466677777777776542 22212234445666665555443 11 3333345556666666
Q ss_pred EcccCeecccCCcCCcCCCCceEEEecC
Q 039577 89 SFSFNKIRGWIPQKIGNLTELVELYLDG 116 (282)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 116 (282)
.+...-.. .....+.....|+.+.+..
T Consensus 143 ~lp~~~~~-I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 143 TIPEGVTS-VADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECCTTCCE-ECTTTTTTCTTCCEEECCT
T ss_pred cccceeee-ecccceecccccccccccc
Confidence 65432211 1222344445555555543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=1.1e-05 Score=68.51 Aligned_cols=110 Identities=9% Similarity=0.045 Sum_probs=64.0
Q ss_pred CccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCee-----------
Q 039577 27 PPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKI----------- 95 (282)
Q Consensus 27 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----------- 95 (282)
..+|.++.+|+.+.+..+ +...-..++.+|.+|+.+++..+ ++ .+....|..+.+|+.+.+..+-.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeeccc
Confidence 346788999999998643 44333456778999999999764 33 45544666666666654432110
Q ss_pred ----------cccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC
Q 039577 96 ----------RGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141 (282)
Q Consensus 96 ----------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (282)
.......|..+.+|+.+.+..+.. . .-...+....+|+.+.+..
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~-I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-T-LHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-E-ECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCccc-e-eccccccCCCCceEEEcCC
Confidence 000122355567788877765432 1 1123345556666666544
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.29 E-value=9.5e-05 Score=62.62 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=68.5
Q ss_pred cccCCC-CccEEEecCCcceeeCCccccCCCCCcEEEcCCCc---ccccCCCCccCCCCCccEEEcccCeecccCCcCCc
Q 039577 29 HIGNLS-FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI---IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG 104 (282)
Q Consensus 29 ~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 104 (282)
+|.+++ .|+.+.+-.+ ++..-..++.+|.+|+.+.+..+. ++ .+....|..+.+|+.+.+..+ +.......+.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhh
Confidence 555664 5888888643 443345677889999999997653 43 455557788888888776543 3322344567
Q ss_pred CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC
Q 039577 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141 (282)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (282)
.+.+|+.+.+..+.. . .-...+.....|+.+.+..
T Consensus 135 ~c~~L~~i~lp~~~~-~-I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 135 HCEELDTVTIPEGVT-S-VADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TCTTCCEEECCTTCC-E-ECTTTTTTCTTCCEEECCT
T ss_pred hhcccccccccceee-e-ecccceecccccccccccc
Confidence 788999999976432 1 1122345556666666654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=9.7e-08 Score=72.32 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=29.2
Q ss_pred CCccEEEeecCccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEe--ecccce
Q 039577 155 PNLENLFLWQNNLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYA--SSCQLS 224 (282)
Q Consensus 155 ~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l--~~n~~~ 224 (282)
++|++|++++|.+.. .+...+...++|++|++++|.+.+... ..+...+...+ .|++|++ ++|.++
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~---~~l~~~L~~n~-~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI---LALVEALQSNT-SLIELRIDNQSQPLG 136 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH---HHHHHGGGGCS-SCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH---HHHHHHHHhCC-CceEEEecCCCCCCC
Confidence 444555555554431 122233344555555555555543211 12222333333 5666666 555554
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.97 E-value=0.0017 Score=54.42 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=34.3
Q ss_pred cccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccC
Q 039577 207 GNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276 (282)
Q Consensus 207 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 276 (282)
..+. +|+++.+.++.++......|..+.+|+.+.++ .+ ++......|.+|.+|+++.+..
T Consensus 283 ~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp--------~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP--------TA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECC--------TT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccc-ccccccccccccceehhhhhcCCCCCCEEEcC--------cc-ccEEHHHHhhCCCCCCEEEECC
Confidence 3344 78888887766664444566666555444433 22 3322345677777777776643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=3e-06 Score=67.56 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=59.2
Q ss_pred cCCCCccEEEecCCccee--eCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCc-------
Q 039577 31 GNLSFLVSLTSVAKSFYG--TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQ------- 101 (282)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------- 101 (282)
.++++|++|+|++|.+.+ .++..+..+++|+.|++++|.+.+.-.-..+..+ +|++|++.+|.+.+..+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 467899999999999876 4555566889999999999998642111123333 899999999988754442
Q ss_pred CCcCCCCceEEEe
Q 039577 102 KIGNLTELVELYL 114 (282)
Q Consensus 102 ~~~~l~~L~~L~l 114 (282)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2456788888864
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=2.9e-06 Score=67.63 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCccE--EEecCCcce---eeCCccccCCCCCcEEEcCCCcccc--cCCCCccCCCCCccEEEcccCeecccCCcCCc
Q 039577 32 NLSFLVS--LTSVAKSFY---GTLPNELWQLQRLRIVDLSSGIIPG--SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG 104 (282)
Q Consensus 32 ~l~~L~~--L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 104 (282)
..+.|.. +++..|... ..++..-.++++|+.|++++|.+.+ .++. .+..+++|+.|++++|.+.+. ..+.
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~ 215 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELD 215 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhh
Confidence 3445555 566666322 1111112368899999999999974 3334 567899999999999998853 3344
Q ss_pred CCC--CceEEEecCCCCCCCCCC-------ccccCCCCCcEEE
Q 039577 105 NLT--ELVELYLDGNNLQAGLLP-------SVIFNSSNIQVII 138 (282)
Q Consensus 105 ~l~--~L~~L~l~~~~~~~~~~~-------~~~~~~~~L~~L~ 138 (282)
.+. +|++|++.+|.+ ....| ..+..+++|+.|+
T Consensus 216 ~l~~l~L~~L~L~~Npl-~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSL-CDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTT-GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcC-ccccCcchhHHHHHHHHCcccCeEC
Confidence 444 999999999998 33333 2356788888876
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=1.5e-06 Score=64.63 Aligned_cols=85 Identities=8% Similarity=-0.013 Sum_probs=61.4
Q ss_pred CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCC----CCccEEEcccCe-ecccCCcCCcCCC
Q 039577 34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDC----IMLRRLSFSFNK-IRGWIPQKIGNLT 107 (282)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~ 107 (282)
.+|+.||+++|.++..--..+..|++|+.|++++|. +++..-. .+..+ ++|++|++++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 479999999998876544556789999999999986 5432111 23332 479999999885 6644344566789
Q ss_pred CceEEEecCCCC
Q 039577 108 ELVELYLDGNNL 119 (282)
Q Consensus 108 ~L~~L~l~~~~~ 119 (282)
+|++|+++++.-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 999999998863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=2.1e-06 Score=63.78 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=61.6
Q ss_pred CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-ecccCCcCCcCC----CCceEEEecCCC-CCCCC
Q 039577 50 LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQKIGNL----TELVELYLDGNN-LQAGL 123 (282)
Q Consensus 50 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~ 123 (282)
+|.....-.+|+.||++++.+++..-. .+..+++|++|++++|. +++..-..+..+ +.|++|++++|. ++...
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 454333456899999999887643222 46788999999999885 553322334443 369999999875 53222
Q ss_pred CCccccCCCCCcEEEecCcc
Q 039577 124 LPSVIFNSSNIQVIILYGNH 143 (282)
Q Consensus 124 ~~~~~~~~~~L~~L~l~~~~ 143 (282)
+ ..+.++++|++|++++|.
T Consensus 132 l-~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 I-IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp H-HHGGGCTTCCEEEEESCT
T ss_pred H-HHHhcCCCCCEEECCCCC
Confidence 2 235678899999999875
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.022 Score=47.56 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.5
Q ss_pred ccccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577 242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI 277 (282)
Q Consensus 242 l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 277 (282)
+.+|+.+.+.++.++......|.+|.+|+.+++..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 356777888777777555678999999999998653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=1.2e-05 Score=60.88 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCCccEEEeecC-ccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577 154 LPNLENLFLWQN-NLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228 (282)
Q Consensus 154 ~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 228 (282)
-+.|++|+++++ .+.. .+...+.....|+.|++++|.+.+.... .+...+.... .|++|+|+.|.++....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~---alA~aL~~N~-tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR---GLIELIETSP-SLRVLNVESNFLTPELL 115 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT---THHHHHHHCS-SCCEEECCSSBCCHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH---HHHHHHhcCC-ccCeEecCCCcCCHHHH
Confidence 345666666654 4431 2344455566777777777777644222 3333444444 77777777777663322
Q ss_pred ccccCCccCccccccccceeeccCC---eeeee----cchhhhccCCCceeeccCccC
Q 039577 229 VGFGNLSNMIKCNLESLFGLLLGGD---ALEGQ----IPTCLANLTSLISLNLRSIRL 279 (282)
Q Consensus 229 ~~~~~l~~l~~l~l~~l~~L~l~~n---~~~~~----~~~~~~~l~~L~~l~l~~n~~ 279 (282)
..+.. .|+. -..|++|+++++ .+.+. +.+.+...++|++++++.|.+
T Consensus 116 ~ala~--aL~~--N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLR--STLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHH--HTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHH--HHhh--CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22211 0111 134667777643 33322 334556667777777776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.66 E-value=0.0027 Score=44.63 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.0
Q ss_pred ccccceEEeecccceecCCc-cccCCccCccccccccceeeccCCeee
Q 039577 210 STSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESLFGLLLGGDALE 256 (282)
Q Consensus 210 ~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l~~L~l~~n~~~ 256 (282)
|.++++|+|++|.++ .+|. .|..+ ++|+.|+|++|.+.
T Consensus 30 p~~l~~L~Ls~N~l~-~l~~~~f~~l--------~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 30 PVDTTELVLTGNNLT-ALPPGLLDAL--------PALRTAHLGANPWR 68 (130)
T ss_dssp CTTCSEEECTTSCCS-SCCTTTGGGC--------TTCCEEECCSSCCB
T ss_pred CcCCCEEECCCCcCC-ccChhhhhhc--------cccCEEEecCCCee
Confidence 347888888888887 4444 34443 56777888888664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.00017 Score=54.44 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=67.3
Q ss_pred ccchhhCCCCCcEEeccCc-ccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceee
Q 039577 171 VPDSICNASEVTILELSKN-LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL 249 (282)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~ 249 (282)
+...+...+.|++|+++++ .+.+.. ...+...+.... .|++|++++|.++......++.. |+. -..|++|+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~g---a~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~a--L~~--N~tL~~L~ 104 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKER---IRSLIEAACNSK-HIEKFSLANTAISDSEARGLIEL--IET--SPSLRVLN 104 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHH---HHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHH--HHH--CSSCCEEE
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHH---HHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHH--Hhc--CCccCeEe
Confidence 3444566789999999985 775321 113334455554 99999999999985544444321 111 25799999
Q ss_pred ccCCeeeeecch----hhhccCCCceeeccCc
Q 039577 250 LGGDALEGQIPT----CLANLTSLISLNLRSI 277 (282)
Q Consensus 250 l~~n~~~~~~~~----~~~~l~~L~~l~l~~n 277 (282)
+++|.+.+.... .+.....|++|++++|
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 999999866443 4556688999999865
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.21 E-value=0.0099 Score=41.67 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=28.9
Q ss_pred EEEcCCCccc-cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcc
Q 039577 14 ALSLPNLTLG-GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70 (282)
Q Consensus 14 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 70 (282)
.++.++++++ ..+|..+. ++|+.|+|++|.++..-+..+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666664 24554332 3566666666666532233344555666666665554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.63 E-value=39 Score=21.82 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=20.6
Q ss_pred CccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCC
Q 039577 27 PPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSS 67 (282)
Q Consensus 27 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 67 (282)
..+|.++..|+.+.+-.+ ++..-...|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345666666666666432 2111223455566666666554
Done!