BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039578
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 136
Score = 125 bits (313), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 80/136 (58%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVKFLKP K VILLQGR+AGRK VI
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTA-DSLQSKDKKVTACKETKKRLEE 79
SRV+ F+KLVN+ HLMPTRYTL++DLKEV D+L ++DKKV ACK K RLE+
Sbjct: 61 KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED 120
Query: 80 RFKTGKNCWFFTKLGF 95
RFKTGKN WFFTKL F
Sbjct: 121 RFKTGKNRWFFTKLRF 136
>pdb|3IZS|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5E|Z Chain Z, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|Z Chain Z, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|Z Chain Z, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 136
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KFLK KV ++++GRYAG+KVVI
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEE 79
++++ F+K+VNY HL+PTRYTL+++ K V++ ++ + ++ A K KK EE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R + GKN WFF+KL F
Sbjct: 121 RHQAGKNQWFFSKLRF 136
>pdb|3ZF7|AA Chain a, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 133
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 60/135 (44%), Gaps = 43/135 (31%)
Query: 2 VKFLKPNKVVILLQGRYAGRKVVI------------------------------------ 25
+KFLKP KVVI+ GRYAG+K VI
Sbjct: 1 MKFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRS 60
Query: 26 ----SRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRL-EER 80
S+V F+++VN++H +PTRY N+DL L S K K+ KRL + R
Sbjct: 61 ITRRSQVGVFLRVVNHKHFLPTRY--NMDLSRELRGRINVSDASKKAKSKQLVKRLFQAR 118
Query: 81 FKTGKNCWFFTKLGF 95
+ G N WFF +L F
Sbjct: 119 YNAGNNRWFFQRLRF 133
>pdb|4A18|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 144
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 53/146 (36%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KFLK +VVILLQGR+AG+K VI
Sbjct: 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLN--IDLKEVLTADSLQSKDKKVTACKET-KKRL 77
+ V+ F+K VN H+MPTRY++ D KE++ D +++ K + ++T KK
Sbjct: 61 KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKNNAK--SEVRDTLKKVF 118
Query: 78 EERFKT--------GKNCWFFTKLGF 95
E+++T +FF+KL F
Sbjct: 119 VEKYRTINPEEKSASHTKFFFSKLRF 144
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 32.0 bits (71), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 40 LMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEERFK 82
++ T TL + L+E+L L+ K A E KR+EE+FK
Sbjct: 130 MLATGGTLEVALREILKHSPLKVKSVHAIAAPEGLKRIEEKFK 172
>pdb|3ZF7|VV Chain v, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 192
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 3 KFLKPNKVVILLQGRYAGRKVVI 25
K KP + I+L GR+ GR+ VI
Sbjct: 28 KSCKPGTIAIILAGRFRGRRAVI 50
>pdb|3IZR|G Chain G, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 219
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 LKPNKVVILLQGRYAGRKVV 24
+ P V+ILL GRY G++VV
Sbjct: 75 ITPGTVLILLAGRYMGKRVV 94
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG A ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--ASSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 200 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 254
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 ILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACK 71
+L QG + ++++ +E+ L+ Y H +P RY ++ E+L+ + S D + K
Sbjct: 202 VLEQG--SSSSLIVATLES---LLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256
>pdb|4A18|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 191
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 5 LKPNKVVILLQGRYAGRKVV 24
+ P V+ILL GR+ G++VV
Sbjct: 45 IAPGTVLILLAGRFRGKRVV 64
>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s
Subunit Of The First 80s In The Asymmetric Unit.
pdb|3O5H|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s
Subunit Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|E Chain E, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 176
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 LKPNKVVILLQGRYAGRKVV 24
L P V+ILL GR+ G++VV
Sbjct: 34 LVPGTVLILLAGRFRGKRVV 53
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 119 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 168
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
>pdb|3TEW|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.45-A Resolution
pdb|3TEX|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.7-A Resolution
Length = 715
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 35 VNYQHLMPTRYTLNIDL--------KEVLTADSLQSKDKKVTACKETKKR 76
+ YQ PT L+ L KEV+++D+LQ + K + KKR
Sbjct: 118 IQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKR 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,434,972
Number of Sequences: 62578
Number of extensions: 76809
Number of successful extensions: 238
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 33
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)