BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039578
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1
Length = 135
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/135 (58%), Positives = 85/135 (62%), Gaps = 40/135 (29%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVKFLKPNK VILLQGRYAG+K VI
Sbjct: 1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEER 80
SRV+AFVKLVNYQHLMPTRYTL++DLK+ + D LQSKDKKVTA KETKK LEER
Sbjct: 61 KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120
Query: 81 FKTGKNCWFFTKLGF 95
FKTGKN WFFTKL F
Sbjct: 121 FKTGKNRWFFTKLRF 135
>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2
SV=2
Length = 135
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 84/135 (62%), Gaps = 40/135 (29%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVKFLK NK VILLQGRYAG+K VI
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEER 80
SRV+ F+KLVNYQHLMPTRYTL++DLKEV T D+L+SKDKKVTA KE K +LEER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120
Query: 81 FKTGKNCWFFTKLGF 95
FKTGKN WFFTKL F
Sbjct: 121 FKTGKNRWFFTKLRF 135
>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2
SV=2
Length = 135
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 83/135 (61%), Gaps = 40/135 (29%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVKFLK NK VILLQGRYAG+K VI
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEER 80
SRV+ F+KLVNYQHLMPTRYTL++DLKEV T D+LQSKDKKV A KE K +LEER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120
Query: 81 FKTGKNCWFFTKLGF 95
FKTGKN WFFTKL F
Sbjct: 121 FKTGKNRWFFTKLRF 135
>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2
SV=1
Length = 135
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 80/135 (59%), Gaps = 40/135 (29%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVK +KP K VILLQGRY G+K VI
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEER 80
SRV+ F K++NYQH+MPTRYTL++DLK V++AD++ SKDKKVTA KE K + EER
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120
Query: 81 FKTGKNCWFFTKLGF 95
FKTGKN WFFTKL F
Sbjct: 121 FKTGKNRWFFTKLRF 135
>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1
Length = 138
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 82/139 (58%), Gaps = 45/139 (32%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KFLKPNK VILLQG+YAGRK VI
Sbjct: 1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL----KEVLTADSLQSKDKKVTACKETKKR 76
SRV+AF+KLVNY H+MPTRYTL+ DL K+V+ AD LQ++DKKVTA + TK R
Sbjct: 61 KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 119
Query: 77 LEERFKTGKNCWFFTKLGF 95
L ERFKTGKN WFFTKL F
Sbjct: 120 LAERFKTGKNRWFFTKLRF 138
>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1
Length = 134
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 74/135 (54%), Gaps = 41/135 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVISR--------------------------------- 27
MVKFLK KVV++L GR+AG+K VI R
Sbjct: 1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQK 60
Query: 28 -------VEAFVKLVNYQHLMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEER 80
++ F+K VNY HLMPTRYTL++D K V A++ ++ KKV A KE KK LEE+
Sbjct: 61 KQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKGV-AAEAQENPTKKVEARKECKKLLEEK 119
Query: 81 FKTGKNCWFFTKLGF 95
FKTGKN WFFTKL F
Sbjct: 120 FKTGKNRWFFTKLRF 134
>sp|O14388|RL27A_SCHPO 60S ribosomal protein L27-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27a PE=2 SV=2
Length = 136
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVK LKP KV ++ +GR+AG+KVVI
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEE 79
SRV+ F+K+VNY HLMPTRY L +D LK ++TAD+ + ++ A K KK EE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
++++GK+ WFFT L F
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2
Length = 136
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRYAGRK VI
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S+++AFVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3
Length = 136
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRYAGRK VI
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S+++AFVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3
Length = 136
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRYAGRK VI
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S+++AFVK+ NY HLMPTRY+++I L K ++ D + K A +E K + EE
Sbjct: 61 KVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2
Length = 136
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFF KL F
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>sp|O74538|RL27B_SCHPO 60S ribosomal protein L27-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27b PE=3 SV=1
Length = 136
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
MVK LKP KV ++ +GR+AG+KVVI
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEE 79
SRV+ F+K++NY HLMPTRY L +D LK ++T + ++ A K K EE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
+++TGK+ WFFT L F
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3
Length = 136
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 70/136 (51%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KF+KP KVV++L GRY+GRK VI
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
S++++FVK+ NY HLMPTRY+++I L K V+ D + K A +E K + EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
++KTGKN WFF KL F
Sbjct: 121 KYKTGKNKWFFQKLRF 136
>sp|P0C2H7|RL27B_YEAST 60S ribosomal protein L27-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27B PE=1 SV=1
Length = 136
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KFLK KV ++++GRYAG+KVVI
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEE 79
++++ F+K+VNY HL+PTRYTL+++ K V++ ++ + ++ A K KK EE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R + GKN WFF+KL F
Sbjct: 121 RHQAGKNQWFFSKLRF 136
>sp|P0C2H6|RL27A_YEAST 60S ribosomal protein L27-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27A PE=1 SV=1
Length = 136
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KFLK KV ++++GRYAG+KVVI
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEE 79
++++ F+K+VNY HL+PTRYTL+++ K V++ ++ + ++ A K KK EE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R + GKN WFF+KL F
Sbjct: 121 RHQAGKNQWFFSKLRF 136
>sp|Q9P843|RL27_CANAX 60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVISRVE------------------------------- 29
M KF+K KV I+++GRYAG+KVVI +
Sbjct: 1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAK 60
Query: 30 ---------AFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEE 79
FVKLVNY HLMPTRY+L+++ K +T+++L+ ++ A K KK EE
Sbjct: 61 KVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
+ + GKN WFF KL F
Sbjct: 121 KHQAGKNKWFFQKLHF 136
>sp|P91914|RL27_CAEEL 60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2
SV=1
Length = 136
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 41/136 (30%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M K +KP KVV++L+G+YAGRK V+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLNIDL-KEVLTADSLQSKDKKVTACKETKKRLEE 79
++++ F+K+V+Y HL+PTRY++++ K + ++L++ KK A E K + EE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 80 RFKTGKNCWFFTKLGF 95
R+KTGKN WFFTKL F
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>sp|Q55BE6|RL27_DICDI 60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3
SV=1
Length = 144
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 50/142 (35%)
Query: 3 KFLKPNKVVILLQGRYAGRKVVI------------------------------------- 25
KF+KP ++VILL G+YAGRK V+
Sbjct: 4 KFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRK 63
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLN-------IDLKEVLTADSLQSKDKKVTACKET 73
+ + +FVK+VNY H+MPTRY LK +T +S Q + T
Sbjct: 64 TILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVAKRAHTRL-AV 122
Query: 74 KKRLEERFKTGKNCWFFTKLGF 95
KK E + K GK+ WFF+KL F
Sbjct: 123 KKIFEAKHKAGKSKWFFSKLRF 144
>sp|P0DJ19|RL27_TETTH 60S ribosomal protein L27 OS=Tetrahymena thermophila GN=RPL27 PE=1
SV=1
Length = 144
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 53/146 (36%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------- 25
M KFLK +VVILLQGR+AG+K VI
Sbjct: 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60
Query: 26 -----SRVEAFVKLVNYQHLMPTRYTLN--IDLKEVLTADSLQSKDKKVTACKET-KKRL 77
+ V+ F+K VN H+MPTRY++ D KE++ D +++ K + ++T KK
Sbjct: 61 KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKNNAK--SEVRDTLKKVF 118
Query: 78 EERFKT--------GKNCWFFTKLGF 95
E+++T +FF+KL F
Sbjct: 119 VEKYRTINPEEKSASHTKFFFSKLRF 144
>sp|O67914|UPP_AQUAE Uracil phosphoribosyltransferase OS=Aquifex aeolicus (strain VF5)
GN=upp PE=1 SV=1
Length = 208
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 40 LMPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEERFK 82
++ T TL + L+E+L L+ K A E KR+EE+FK
Sbjct: 130 MLATGGTLEVALREILKHSPLKVKSVHAIAAPEGLKRIEEKFK 172
>sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl14e PE=3 SV=1
Length = 103
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 1 MVKFLKPNKVVILLQGRYAGRKVVISRV--EAFV-------------KLVNYQHLMPTRY 45
MVK + +VV+ + GR AGRK V+ + E +V + VN H+ PT
Sbjct: 1 MVKVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDK 60
Query: 46 TLNI 49
++I
Sbjct: 61 KIDI 64
>sp|Q8ZNR3|SOPA_SALTY E3 ubiquitin-protein ligase SopA OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=sopA PE=1 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLTSKITSVKNTHTSLNEKFKTGKD 55
>sp|C9X8K0|SOPA_SALTD E3 ubiquitin-protein ligase SopA OS=Salmonella typhimurium
(strain D23580) GN=sopA PE=3 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLTSKITSVKNTHTSLNEKFKTGKD 55
>sp|D0ZMG9|SOPA_SALT1 E3 ubiquitin-protein ligase SopA OS=Salmonella typhimurium
(strain 14028s / SGSC 2262) GN=sopA PE=3 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLTSKITSVKNTHTSLNEKFKTGKD 55
>sp|B4TMK5|SOPA_SALSV E3 ubiquitin-protein ligase SopA OS=Salmonella schwarzengrund
(strain CVM19633) GN=sopA PE=3 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLASKITSVKNTHTSLNEKFKTGKD 55
>sp|B4SX34|SOPA_SALNS E3 ubiquitin-protein ligase SopA OS=Salmonella newport (strain
SL254) GN=sopA PE=3 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLTSKITSVKNTHTSLNEKFKTGKD 55
>sp|B4T918|SOPA_SALHS E3 ubiquitin-protein ligase SopA OS=Salmonella heidelberg (strain
SL476) GN=sopA PE=3 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLTSKITSVKNTHTSLNEKFKTGKD 55
>sp|Q9S4P4|SOPA_SALDU E3 ubiquitin-protein ligase SopA OS=Salmonella dublin GN=sopA
PE=1 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLASKITSVKNTHTSLNEKFKTGKD 55
>sp|B5FM34|SOPA_SALDC E3 ubiquitin-protein ligase SopA OS=Salmonella dublin (strain
CT_02021853) GN=sopA PE=3 SV=1
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 46 TLNIDLKEVLTADSLQSKD---KKVTACKETKKRLEERFKTGKN 86
T+ +K+++T+ +K+ K+T+ K T L E+FKTGK+
Sbjct: 12 TIPNQVKKLITSIREHTKNGLASKITSVKNTHTSLNEKFKTGKD 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,977,717
Number of Sequences: 539616
Number of extensions: 999112
Number of successful extensions: 3956
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3880
Number of HSP's gapped (non-prelim): 65
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)