Query 039578
Match_columns 95
No_of_seqs 111 out of 252
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00471 60S ribosomal protein 100.0 1.8E-49 4E-54 285.1 9.1 94 1-95 1-134 (134)
2 KOG3418 60S ribosomal protein 100.0 1.8E-43 4E-48 254.2 7.0 95 1-95 1-136 (136)
3 PF01777 Ribosomal_L27e: Ribos 100.0 9.3E-36 2E-40 199.8 -7.8 70 26-95 15-85 (85)
4 COG2163 RPL14A Ribosomal prote 99.5 1.9E-14 4.1E-19 102.7 3.6 86 1-86 1-124 (125)
5 PRK04333 50S ribosomal protein 98.8 1.1E-08 2.3E-13 68.6 4.3 48 4-51 3-64 (84)
6 PTZ00065 60S ribosomal protein 98.5 1.1E-07 2.4E-12 68.5 4.7 49 3-51 6-68 (130)
7 PF00467 KOW: KOW motif; Inte 95.6 0.012 2.7E-07 32.3 2.5 22 7-28 1-22 (32)
8 PF01159 Ribosomal_L6e: Riboso 95.5 0.0055 1.2E-07 42.9 0.9 35 30-64 4-41 (108)
9 smart00739 KOW KOW (Kyprides, 95.4 0.023 4.9E-07 29.2 2.9 25 5-29 2-26 (28)
10 KOG3421 60S ribosomal protein 91.7 0.21 4.6E-06 36.6 3.2 48 2-51 4-66 (136)
11 CHL00141 rpl24 ribosomal prote 87.9 0.62 1.3E-05 30.9 2.9 25 4-28 8-32 (83)
12 PRK01191 rpl24p 50S ribosomal 87.0 1.7 3.7E-05 31.1 4.8 45 5-51 46-95 (120)
13 PRK12281 rplX 50S ribosomal pr 84.2 1.2 2.7E-05 29.1 2.8 41 4-44 6-53 (76)
14 PRK00004 rplX 50S ribosomal pr 80.5 2.2 4.9E-05 29.3 3.1 36 2-37 2-42 (105)
15 TIGR01079 rplX_bact ribosomal 76.1 3.2 7E-05 28.6 2.9 40 4-43 3-49 (104)
16 TIGR01080 rplX_A_E ribosomal p 74.4 3.7 8.1E-05 28.9 2.9 46 4-51 41-91 (114)
17 PTZ00194 60S ribosomal protein 71.3 5.3 0.00011 29.4 3.2 43 5-51 47-96 (143)
18 KOG1694 60s ribosomal protein 66.5 4 8.7E-05 30.2 1.7 37 3-50 32-68 (152)
19 PF01929 Ribosomal_L14e: Ribos 60.7 6.3 0.00014 25.9 1.7 19 33-51 3-21 (77)
20 COG0198 RplX Ribosomal protein 57.4 14 0.0003 25.8 3.0 27 2-28 2-28 (104)
21 TIGR00405 L26e_arch ribosomal 54.8 22 0.00048 24.7 3.7 25 4-28 86-110 (145)
22 COG2163 RPL14A Ribosomal prote 53.7 6.2 0.00013 28.3 0.8 16 35-50 74-89 (125)
23 PRK08559 nusG transcription an 51.2 51 0.0011 23.5 5.2 24 5-28 95-118 (153)
24 COG1471 RPS4A Ribosomal protei 48.9 17 0.00036 29.0 2.6 27 5-31 174-200 (241)
25 PTZ00223 40S ribosomal protein 43.7 20 0.00044 28.8 2.4 24 5-28 172-195 (273)
26 PRK04313 30S ribosomal protein 41.1 23 0.00049 28.0 2.2 25 5-29 172-196 (237)
27 PLN00036 40S ribosomal protein 39.5 25 0.00055 28.1 2.3 25 5-29 175-199 (261)
28 PF13234 rRNA_proc-arch: rRNA- 36.1 28 0.00061 26.4 2.0 23 3-25 71-93 (268)
29 PTZ00118 40S ribosomal protein 33.4 36 0.00078 27.3 2.3 23 5-27 175-197 (262)
30 PF02491 SHS2_FTSA: SHS2 domai 33.4 24 0.00051 22.2 1.1 14 37-50 44-57 (80)
31 PRK05609 nusG transcription an 32.1 57 0.0012 23.1 3.0 24 5-28 127-150 (181)
32 KOG1999 RNA polymerase II tran 28.3 46 0.001 31.4 2.4 25 3-27 458-482 (1024)
33 PF10307 DUF2410: Hypothetical 27.0 41 0.00088 25.7 1.6 20 6-25 69-89 (197)
34 COG5137 Histone chaperone invo 27.0 50 0.0011 26.6 2.1 17 8-24 91-107 (279)
35 TIGR00922 nusG transcription t 25.9 85 0.0018 22.1 3.0 25 5-29 120-144 (172)
36 PRK09014 rfaH transcriptional 21.5 2E+02 0.0044 20.1 4.2 26 4-29 109-134 (162)
37 COG0250 NusG Transcription ant 21.1 1.1E+02 0.0024 22.7 2.8 25 4-28 123-147 (178)
No 1
>PTZ00471 60S ribosomal protein L27; Provisional
Probab=100.00 E-value=1.8e-49 Score=285.07 Aligned_cols=94 Identities=45% Similarity=0.812 Sum_probs=92.9
Q ss_pred CcccccCCEEEEEecccccCceEEE----------------------------------------eeeccceEEeeccce
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------------SRVEAFVKLVNYQHL 40 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi----------------------------------------~kik~F~k~~N~~Hl 40 (95)
|||||+||+|||||+|||||||||| |+|+||+|++|||||
T Consensus 1 M~K~~kpgkVVivL~GR~AGkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHl 80 (134)
T PTZ00471 1 MTKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHF 80 (134)
T ss_pred CCccccCCEEEEEEccccCCcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeecee
Confidence 9999999999999999999999999 889999999999999
Q ss_pred eeeceeeecccccccccccccChhHHHHHHHHHHHHHHHHhcCCCceEEeeecCC
Q 039578 41 MPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEERFKTGKNCWFFTKLGF 95 (95)
Q Consensus 41 ~pTry~vdi~~k~~v~~~~~k~~~~k~~a~k~~k~~feeryk~gKnkwfF~KLrF 95 (95)
|||||++|++ ++++|+|.++||++|++|+++++..|||+|++|||+|||+||||
T Consensus 81 mPTRY~vdi~-~~~v~~~~~~d~~~k~~ar~~~k~~feer~k~gKn~wFF~kLrF 134 (134)
T PTZ00471 81 LPTRYNMDMS-KELRGRINVSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF 134 (134)
T ss_pred cccceeeecc-ccccCHHHhhChHHHHHHHHHHHHHHHHHHhcCccceeeeeccC
Confidence 9999999999 89999999999999999999999999999999999999999998
No 2
>KOG3418 consensus 60S ribosomal protein L27 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-43 Score=254.21 Aligned_cols=95 Identities=61% Similarity=1.006 Sum_probs=93.6
Q ss_pred CcccccCCEEEEEecccccCceEEE----------------------------------------eeeccceEEeeccce
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------------SRVEAFVKLVNYQHL 40 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi----------------------------------------~kik~F~k~~N~~Hl 40 (95)
|+|||+||+||++|+|||||||||| |+++||+|++|||||
T Consensus 1 m~kflkPgkvv~v~sG~yAg~KaVivk~~Ddg~~d~p~~h~LvAgi~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~hl 80 (136)
T KOG3418|consen 1 MAKFLKPGKVVLVLSGRYAGKKAVIVKNIDDGTEDKPYGHALVAGVDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYNHL 80 (136)
T ss_pred CcccccCCcEEEeecccccCccEEEEeecccCCccCCCceeeeeehhhccccccccccchhhhhcccceeEEEEeecccc
Confidence 8999999999999999999999999 889999999999999
Q ss_pred eeeceeeecc-cccccccccccChhHHHHHHHHHHHHHHHHhcCCCceEEeeecCC
Q 039578 41 MPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEERFKTGKNCWFFTKLGF 95 (95)
Q Consensus 41 ~pTry~vdi~-~k~~v~~~~~k~~~~k~~a~k~~k~~feeryk~gKnkwfF~KLrF 95 (95)
|||||++|++ +++++++|+++||++|..|+++++..|||+|++|+|+|||++|||
T Consensus 81 MptRy~vdv~~~k~v~~kdv~~~p~~K~~a~~~~k~kfeer~k~gkn~wff~~lrf 136 (136)
T KOG3418|consen 81 MPTRYTVDVLALKTVINKDVFRDPVKKGTAIKEAKVKFEERYKTGKNKWFFTKLRF 136 (136)
T ss_pred cCcceEEeehhhhccccHHhhhChhhhhhhhhHHHHHHHHHHHhCccccccccccC
Confidence 9999999999 689999999999999999999999999999999999999999998
No 3
>PF01777 Ribosomal_L27e: Ribosomal L27e protein family; InterPro: IPR001141 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein, L27 is found in fungi, plants, algae and vertebrates [, ]. The family has a specific signature at the C terminus.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_a 4A1B_N 4A19_N 4A18_N 4A1D_N 3IZR_a.
Probab=99.98 E-value=9.3e-36 Score=199.77 Aligned_cols=70 Identities=56% Similarity=0.945 Sum_probs=61.4
Q ss_pred eeeccceEEeeccceeeeceeeecc-cccccccccccChhHHHHHHHHHHHHHHHHhcCCCceEEeeecCC
Q 039578 26 SRVEAFVKLVNYQHLMPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEERFKTGKNCWFFTKLGF 95 (95)
Q Consensus 26 ~kik~F~k~~N~~Hl~pTry~vdi~-~k~~v~~~~~k~~~~k~~a~k~~k~~feeryk~gKnkwfF~KLrF 95 (95)
|+|+||+|+|||||||||||+||++ ++++|++|+++||++|++|+++++..|||+|++|||+|||+||||
T Consensus 15 skiK~FvK~iNynHlmPTRY~vd~~~~k~~v~~~~l~~~~~kk~a~k~~k~~feer~k~gKnkwFF~KLrF 85 (85)
T PF01777_consen 15 SKIKPFVKVINYNHLMPTRYSVDIPDDKTVVNKDALKDPSKKKKAKKEIKKKFEERYKTGKNKWFFQKLRF 85 (85)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred hcceeeEEEeeccceEeeeeeeechhhhcccCHHHHhChHHHHHHHHHHHHHHHHHhccCCCcEEeeeccC
Confidence 8899999999999999999999995 689999999999999999999999999999999999999999998
No 4
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.9e-14 Score=102.69 Aligned_cols=86 Identities=30% Similarity=0.413 Sum_probs=65.7
Q ss_pred CcccccCCEEEEEecccccCceEEEee---------------eccceEEeeccceeeeceeeeccc---ccc--------
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVISR---------------VEAFVKLVNYQHLMPTRYTLNIDL---KEV-------- 54 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi~k---------------ik~F~k~~N~~Hl~pTry~vdi~~---k~~-------- 54 (95)
|.+++.||+||++++|||||++|||.+ -.+=.+++|++|++||...++++= ...
T Consensus 1 ~~~~l~~GrVvvv~~GR~aGkk~VIv~~iDd~~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a~ 80 (125)
T COG2163 1 MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAA 80 (125)
T ss_pred CCccccCCeEEEEecceeCCceEEEEEEccCCEEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHhh
Confidence 788999999999999999999999911 122288999999999999887651 111
Q ss_pred ------------cccccccChhHHHHHHHHHHHHHHHHhcCCCc
Q 039578 55 ------------LTADSLQSKDKKVTACKETKKRLEERFKTGKN 86 (95)
Q Consensus 55 ------------v~~~~~k~~~~k~~a~k~~k~~feeryk~gKn 86 (95)
+..+.+.++..+.+..+..+..++|+|..|++
T Consensus 81 ~~~~~~~~~~~~~~~k~~~~~~~~~~r~~~~k~~~~~~~~~~k~ 124 (125)
T COG2163 81 GVLAKLDKSAKNLETKKVREPLTDAERFKVMKLVKEERLQVGKA 124 (125)
T ss_pred hhhccccccchhhhhhhhhcccchHHHHHHHHHHHHHHhhhhcc
Confidence 22334455566677777889999999998875
No 5
>PRK04333 50S ribosomal protein L14e; Validated
Probab=98.76 E-value=1.1e-08 Score=68.62 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=40.3
Q ss_pred cccCCEEEEEecccccCceEEEeee---------cc-----ceEEeeccceeeeceeeeccc
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV---------EA-----FVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki---------k~-----F~k~~N~~Hl~pTry~vdi~~ 51 (95)
-+++|+||++++||++|+.|||..+ .| =.++.|.+|+.+|...++++-
T Consensus 3 ~v~~GrvV~~~~Grd~gk~~vIv~i~d~~~vlVdg~~~~~~~rk~kn~khl~lt~~ki~~~~ 64 (84)
T PRK04333 3 AIEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGPSLTGVKRRRCNIKHLEPTDKKVDIEK 64 (84)
T ss_pred cccccEEEEEeccCCCCCEEEEEEEecCCEEEEECCCcCCCCCeeechHHEEEeeEEEECCC
Confidence 4689999999999999999999332 22 379999999999999988653
No 6
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=98.55 E-value=1.1e-07 Score=68.53 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=42.0
Q ss_pred ccccCCEEEEEecccccCceEEE------ee---ecc-----ceEEeeccceeeeceeeeccc
Q 039578 3 KFLKPNKVVILLQGRYAGRKVVI------SR---VEA-----FVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 3 k~~kpg~VvivL~GryaGkKaVi------~k---ik~-----F~k~~N~~Hl~pTry~vdi~~ 51 (95)
.|+.+||||++..|.|+||-|+| .+ =+| -..++|++|+.+|.+.++|+-
T Consensus 6 rfVEiGRVvli~~Gp~~GKL~vIVDIID~nRvLVDGP~~tgV~Rq~i~~k~l~LT~~~v~i~r 68 (130)
T PTZ00065 6 RFVEPGRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGAFITGVKRQSIPLKRLKLTDEKIKINR 68 (130)
T ss_pred cceeeceEEEEecCCCCCCEEEEEEEEcCCeEEEeCCCcCCcceeEEeccceEEccEEEecCC
Confidence 57899999999999999999999 11 133 478899999999999999984
No 7
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=95.64 E-value=0.012 Score=32.26 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.1
Q ss_pred CCEEEEEecccccCceEEEeee
Q 039578 7 PNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 7 pg~VvivL~GryaGkKaVi~ki 28 (95)
||..|.+++|+|+|+.+.|..+
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i 22 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEI 22 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEE
T ss_pred CCCEEEEeEcCCCCceEEEEEE
Confidence 6899999999999999999665
No 8
>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.
Probab=95.52 E-value=0.0055 Score=42.91 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.9
Q ss_pred cceEEeeccceeeeceeeecc-c--ccccccccccChh
Q 039578 30 AFVKLVNYQHLMPTRYTLNID-L--KEVLTADSLQSKD 64 (95)
Q Consensus 30 ~F~k~~N~~Hl~pTry~vdi~-~--k~~v~~~~~k~~~ 64 (95)
.-++++|.+|+++|+.+|||+ + .+-+|+++|+-+.
T Consensus 4 VPLRRVnQ~yVIATSTkvDis~v~ip~~~~D~YF~~~~ 41 (108)
T PF01159_consen 4 VPLRRVNQAYVIATSTKVDISGVKIPEKIDDAYFKRKK 41 (108)
T ss_dssp --SEEESSCCCEECSCESCHCCHHH-CCTTGSSSCHCC
T ss_pred CcceecccceEEEEeeEEeccccchhhccchHHHHhhh
Confidence 458999999999999999997 4 3557888886443
No 9
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=95.41 E-value=0.023 Score=29.16 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=22.4
Q ss_pred ccCCEEEEEecccccCceEEEeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik 29 (95)
+++|..|.++.|.|+|..++|.++.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEc
Confidence 5799999999999999999997764
No 10
>KOG3421 consensus 60S ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=91.68 E-value=0.21 Score=36.56 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=41.3
Q ss_pred cccccCCEEEEEecccccCceEEE---------------eeeccceEEeeccceeeeceeeeccc
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVI---------------SRVEAFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi---------------~kik~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
+.+...|+|+++..|-|+||=+.| +.|- ...+|++-+.-|-|.++++.
T Consensus 4 ~r~veVGrva~v~~G~~~GkL~AIVdviDqnr~lvDGp~t~v~--rq~~~~~~~~LT~~~~kfp~ 66 (136)
T KOG3421|consen 4 KRFVEVGRVALVSFGPDAGKLVAIVDVIDQNRALVDGPCTGVP--RQAMNLKCLQLTDFVLKFPR 66 (136)
T ss_pred hhhhhcceEEEEEecCCCceEEEEEEeecchhhhccCcccccc--hhhcchhheeeeeeeEeccc
Confidence 357889999999999999999999 3333 67889999999999999986
No 11
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=87.88 E-value=0.62 Score=30.93 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.4
Q ss_pred cccCCEEEEEecccccCceEEEeee
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki 28 (95)
-+++|--|.|++|++.|+...|++|
T Consensus 8 ~I~~GD~V~Vi~G~dKGK~G~V~~V 32 (83)
T CHL00141 8 HVKIGDTVKIISGSDKGKIGEVLKI 32 (83)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEE
Confidence 5789999999999999999999665
No 12
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=86.97 E-value=1.7 Score=31.07 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=32.6
Q ss_pred ccCCEEEEEecccccCceEEEeee-----ccceEEeeccceeeeceeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
++.|-.|.|++|.+.|+.+.|.+| +.++.-+|... |.-...+.|+
T Consensus 46 IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~VeGvn~~k--~~G~~~e~pI 95 (120)
T PRK01191 46 VRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVEGVTVKK--ADGTEVPRPI 95 (120)
T ss_pred EeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEeCcEEEC--CCCeEEEccc
Confidence 678999999999999999999665 34455555443 4445566665
No 13
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=84.19 E-value=1.2 Score=29.06 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=30.7
Q ss_pred cccCCEEEEEecccccCceEEEeee-----ccceEEeec--cceeeec
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNY--QHLMPTR 44 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~--~Hl~pTr 44 (95)
-+++|--|+|++|++.|+...|..| +.++.-+|. .|.=|+.
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Vegvn~~kkh~kp~~ 53 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVEGVKIAKKAIKPSQ 53 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcCcEEEEEEcCCCc
Confidence 4788999999999999999999665 344666665 3554554
No 14
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=80.53 E-value=2.2 Score=29.25 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=27.8
Q ss_pred cccccCCEEEEEecccccCceEEEeeec-----cceEEeec
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVISRVE-----AFVKLVNY 37 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi~kik-----~F~k~~N~ 37 (95)
..-+++|--|.|++|++.|+...|+.|- .++.-+|.
T Consensus 2 ~~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~ 42 (105)
T PRK00004 2 MMKIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEGVNI 42 (105)
T ss_pred CCcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcCcEE
Confidence 3457899999999999999999996552 34555555
No 15
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=76.08 E-value=3.2 Score=28.56 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=29.2
Q ss_pred cccCCEEEEEecccccCceEEEeee-----ccceEEeec--cceeee
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNY--QHLMPT 43 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~--~Hl~pT 43 (95)
-+++|--|.|++|++.|+...|.+| ..++.-+|. .|.-|+
T Consensus 3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~VegvN~~kkh~k~~ 49 (104)
T TIGR01079 3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVEGVNMVKKHVKPK 49 (104)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEECCcEEEEEecCcc
Confidence 4788999999999999999999655 344555555 355433
No 16
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=74.38 E-value=3.7 Score=28.91 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=31.4
Q ss_pred cccCCEEEEEecccccCceEEEeeec-----cceEEeeccceeeeceeeeccc
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRVE-----AFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~kik-----~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
-++.|--|.|++|.+.|+...|.+|. ..+.-+|... |+-..++.|+
T Consensus 41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Vegvn~~k--~~G~~~e~pI 91 (114)
T TIGR01080 41 PVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVEGVTKEK--VNGTEVPVPI 91 (114)
T ss_pred eeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEcCeEEEC--CCCeEEEeee
Confidence 36789999999999999999996653 2344444333 5555555554
No 17
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=71.33 E-value=5.3 Score=29.39 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=30.5
Q ss_pred ccCCEEEEEecccccCceEEEeee-----ccceEEeec--cceeeeceeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNY--QHLMPTRYTLNIDL 51 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~--~Hl~pTry~vdi~~ 51 (95)
++.|-.|+|++|.+.|+.+.|..| +.+|.-+|. .|.-| ++.|+
T Consensus 47 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVEgvn~~Kk~gk~----~e~PI 96 (143)
T PTZ00194 47 VRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIEKITREKANGEP----VQIGI 96 (143)
T ss_pred eecCCEEEEecCCCCCCceEEEEEEcCCCEEEEeCeEEEecCCCE----eecCc
Confidence 678999999999999999999555 344555554 34444 55554
No 18
>KOG1694 consensus 60s ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=66.51 E-value=4 Score=30.16 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=26.5
Q ss_pred ccccCCEEEEEecccccCceEEEeeeccceEEeeccceeeeceeeecc
Q 039578 3 KFLKPNKVVILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNID 50 (95)
Q Consensus 3 k~~kpg~VvivL~GryaGkKaVi~kik~F~k~~N~~Hl~pTry~vdi~ 50 (95)
+.+.||.|+|+|+ ..-+.-.+.+|-.++.+|.- +|+.
T Consensus 32 ~~l~~gtvliil~----------~~ng~~~~~v~~~~~~~ts~-i~~~ 68 (152)
T KOG1694|consen 32 ASLTPGTVLIILA----------PINGVPLKRVNERYVATTSK-IDPS 68 (152)
T ss_pred hccCCCeeEEEec----------ccCCcCcccccceEEeeeee-eccc
Confidence 3688999999999 22233477888887777766 6555
No 19
>PF01929 Ribosomal_L14e: Ribosomal protein L14; InterPro: IPR002784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes the eukaryotic ribosomal protein L14, which binds to the 60S ribosomal subunit, and archaebacterial ribosomal protein L14E, which binds to the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_N 3O5H_N 3O58_N 2KDS_A 2JOY_A 4A1B_F 4A19_F 4A18_F 4A1D_F 3IZR_N.
Probab=60.71 E-value=6.3 Score=25.94 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=17.3
Q ss_pred EEeeccceeeeceeeeccc
Q 039578 33 KLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 33 k~~N~~Hl~pTry~vdi~~ 51 (95)
.++|++|+.+|.+.|+|+-
T Consensus 3 q~i~~k~l~LT~~~i~i~r 21 (77)
T PF01929_consen 3 QVINLKRLHLTDFVIKIPR 21 (77)
T ss_dssp EEEECTSSEEEEEETTTTT
T ss_pred ceeeccceEeecEEEeccC
Confidence 5789999999999999984
No 20
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=57.43 E-value=14 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred cccccCCEEEEEecccccCceEEEeee
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi~ki 28 (95)
..-++-|-.|+|++|.+.|+...|.++
T Consensus 2 ~~~IrkGD~V~Vi~GkdKGk~GkVl~v 28 (104)
T COG0198 2 KMKVKKGDTVKVIAGKDKGKEGKVLKV 28 (104)
T ss_pred CcceecCCEEEEEecCCCCcceEEEEE
Confidence 345678999999999999999999665
No 21
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=54.81 E-value=22 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.4
Q ss_pred cccCCEEEEEecccccCceEEEeee
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki 28 (95)
.+++|-.|.+..|-|+|-.|+|.++
T Consensus 86 ~~~~Gd~V~I~~GPf~G~~g~v~~~ 110 (145)
T TIGR00405 86 SIKKGDIVEIISGPFKGERAKVIRV 110 (145)
T ss_pred ccCCCCEEEEeecCCCCCeEEEEEE
Confidence 3789999999999999999999655
No 22
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
Probab=53.67 E-value=6.2 Score=28.30 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=9.0
Q ss_pred eeccceeeeceeeecc
Q 039578 35 VNYQHLMPTRYTLNID 50 (95)
Q Consensus 35 ~N~~Hl~pTry~vdi~ 50 (95)
.+++|.++++|..|.+
T Consensus 74 ~~~~~a~~~~~~~~~~ 89 (125)
T COG2163 74 KKANEAAGVLAKLDKS 89 (125)
T ss_pred HHHHHhhhhhcccccc
Confidence 3456666666655443
No 23
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=51.16 E-value=51 Score=23.46 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.8
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
++||-.|-+..|-|+|-.|.|..+
T Consensus 95 ~~~G~~V~I~~Gpf~g~~g~V~~v 118 (153)
T PRK08559 95 IKEGDIVELIAGPFKGEKARVVRV 118 (153)
T ss_pred CCCCCEEEEeccCCCCceEEEEEE
Confidence 679999999999999999999554
No 24
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=48.92 E-value=17 Score=28.98 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.9
Q ss_pred ccCCEEEEEecccccCceEEEeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVEAF 31 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik~F 31 (95)
+.+|..+.+..||.+|.-..|..|..+
T Consensus 174 fe~g~~~~vtgG~h~G~~G~I~~I~~~ 200 (241)
T COG1471 174 FEEGALVYVTGGRHVGRVGTIVEIEIQ 200 (241)
T ss_pred cCCCcEEEEECCccccceEEEEEEEEe
Confidence 579999999999999999999877644
No 25
>PTZ00223 40S ribosomal protein S4; Provisional
Probab=43.68 E-value=20 Score=28.83 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.3
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
+.+|.+|++..|+.+|+=++|..+
T Consensus 172 fe~G~l~~vtgG~n~GriG~I~~i 195 (273)
T PTZ00223 172 NRNGKVVMVTGGANRGRIGEIVSI 195 (273)
T ss_pred cCCCCEEEEECCeeceeEEEEEEE
Confidence 578999999999999999998554
No 26
>PRK04313 30S ribosomal protein S4e; Validated
Probab=41.15 E-value=23 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred ccCCEEEEEecccccCceEEEeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik 29 (95)
+++|..|++..|+.+|+=++|..+.
T Consensus 172 fe~G~l~~itgG~n~GriG~I~~i~ 196 (237)
T PRK04313 172 FEEGNLAIITGGKHVGEIGKIKEIE 196 (237)
T ss_pred cCCCCEEEEECCeeeeeEEEEEEEE
Confidence 5789999999999999999996663
No 27
>PLN00036 40S ribosomal protein S4; Provisional
Probab=39.48 E-value=25 Score=28.12 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred ccCCEEEEEecccccCceEEEeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik 29 (95)
+.+|..|++..|+.+|+=++|..+.
T Consensus 175 fe~G~l~~vtgG~n~GrvG~I~~i~ 199 (261)
T PLN00036 175 FDVGNLVMVTGGRNRGRVGVIKNRE 199 (261)
T ss_pred cCCCCEEEEECCeeceeEEEEEEEE
Confidence 5789999999999999999995543
No 28
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=36.13 E-value=28 Score=26.45 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.3
Q ss_pred ccccCCEEEEEecccccCceEEE
Q 039578 3 KFLKPNKVVILLQGRYAGRKVVI 25 (95)
Q Consensus 3 k~~kpg~VvivL~GryaGkKaVi 25 (95)
.||.|||+|.|-.|-+...=+||
T Consensus 71 ~fL~~GRlV~v~~~~~~~~wgvv 93 (268)
T PF13234_consen 71 PFLQPGRLVVVRDGDRDFGWGVV 93 (268)
T ss_dssp HHS-TTEEEEEEETTCEEEEEEE
T ss_pred HhCCCCCEEEEecCCCccceeEE
Confidence 58999999999977777777777
No 29
>PTZ00118 40S ribosomal protein S4; Provisional
Probab=33.36 E-value=36 Score=27.26 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred ccCCEEEEEecccccCceEEEee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISR 27 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~k 27 (95)
+.+|.+|++..|+.+|+=++|..
T Consensus 175 fe~G~l~~vtgG~n~GriG~I~~ 197 (262)
T PTZ00118 175 FEVGNLVMITGGHNVGRVGTIVS 197 (262)
T ss_pred cCCCCEEEEECCeeceeEEEEEE
Confidence 57899999999999999999843
No 30
>PF02491 SHS2_FTSA: SHS2 domain inserted in FTSA; InterPro: IPR003494 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains [].; GO: 0007049 cell cycle; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=33.36 E-value=24 Score=22.22 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=11.0
Q ss_pred ccceeeeceeeecc
Q 039578 37 YQHLMPTRYTLNID 50 (95)
Q Consensus 37 ~~Hl~pTry~vdi~ 50 (95)
.=|++|.+|.||=.
T Consensus 44 iih~ip~~y~lD~~ 57 (80)
T PF02491_consen 44 IIHVIPQEYILDGQ 57 (80)
T ss_dssp EEEEEEEEEEETTT
T ss_pred EEEEEeEEEEECCC
Confidence 44899999999743
No 31
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=32.14 E-value=57 Score=23.06 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=22.1
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
+++|.-|-|++|-++|..+.|.++
T Consensus 127 ~~~Gd~VrI~~GPf~G~~g~v~~i 150 (181)
T PRK05609 127 FEVGEMVRVIDGPFADFNGTVEEV 150 (181)
T ss_pred CCCCCEEEEeccCCCCCEEEEEEE
Confidence 679999999999999999999766
No 32
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=28.34 E-value=46 Score=31.41 Aligned_cols=25 Identities=32% Similarity=0.727 Sum_probs=22.7
Q ss_pred ccccCCEEEEEecccccCceEEEee
Q 039578 3 KFLKPNKVVILLQGRYAGRKVVISR 27 (95)
Q Consensus 3 k~~kpg~VvivL~GryaGkKaVi~k 27 (95)
|.++||-.|=|++|||.|.-.+|.+
T Consensus 458 KyF~~GDhVKVi~G~~eG~tGlVvr 482 (1024)
T KOG1999|consen 458 KYFEPGDHVKVIAGRYEGDTGLVVR 482 (1024)
T ss_pred hhccCCCeEEEEeccccCCcceEEE
Confidence 6789999999999999999999943
No 33
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=27.05 E-value=41 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=14.6
Q ss_pred cCCEEEEEecccc-cCceEEE
Q 039578 6 KPNKVVILLQGRY-AGRKVVI 25 (95)
Q Consensus 6 kpg~VvivL~Gry-aGkKaVi 25 (95)
.|..++|||+||= ++=...|
T Consensus 69 ~~dtltVLLTGR~e~~F~~lI 89 (197)
T PF10307_consen 69 DPDTLTVLLTGRRESKFSSLI 89 (197)
T ss_pred CCCeeEEEEeCCCchhHHHHH
Confidence 6889999999995 3444444
No 34
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=26.97 E-value=50 Score=26.61 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=14.2
Q ss_pred CEEEEEecccccCceEE
Q 039578 8 NKVVILLQGRYAGRKVV 24 (95)
Q Consensus 8 g~VvivL~GryaGkKaV 24 (95)
|--||+|+|||.|+--|
T Consensus 91 gvTvILlsc~Y~g~eFv 107 (279)
T COG5137 91 GVTVILLSCRYKGQEFV 107 (279)
T ss_pred ceeEEEEEEeecCceeE
Confidence 66799999999998643
No 35
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=25.94 E-value=85 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.4
Q ss_pred ccCCEEEEEecccccCceEEEeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik 29 (95)
+++|.-|.+..|-++|-.++|.++.
T Consensus 120 ~~~G~~V~I~~Gpf~G~~g~v~~~~ 144 (172)
T TIGR00922 120 FEVGEQVRVNDGPFANFTGTVEEVD 144 (172)
T ss_pred CCCCCEEEEeecCCCCcEEEEEEEc
Confidence 6799999999999999999997663
No 36
>PRK09014 rfaH transcriptional activator RfaH; Provisional
Probab=21.51 E-value=2e+02 Score=20.05 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.6
Q ss_pred cccCCEEEEEecccccCceEEEeeec
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~kik 29 (95)
.+++|.-|.+..|-++|--++|.++.
T Consensus 109 ~~~~G~~V~I~~Gp~~g~eg~v~~~~ 134 (162)
T PRK09014 109 TPKPGDKVIITEGAFEGLQAIYTEPD 134 (162)
T ss_pred CCCCCCEEEEecCCCCCcEEEEEEeC
Confidence 36799999999999999999996654
No 37
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=21.08 E-value=1.1e+02 Score=22.73 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.3
Q ss_pred cccCCEEEEEecccccCceEEEeee
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki 28 (95)
-+++|-.|-+..|-|||=.|.|+.+
T Consensus 123 ~~e~Gd~VrI~~GpFa~f~g~V~ev 147 (178)
T COG0250 123 DFEPGDVVRIIDGPFAGFKAKVEEV 147 (178)
T ss_pred cCCCCCEEEEeccCCCCccEEEEEE
Confidence 4789999999999999999999655
Done!