Query 039578
Match_columns 95
No_of_seqs 111 out of 252
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_a 60S ribosomal protein L 100.0 2.1E-50 7.3E-55 289.5 -8.6 95 1-95 1-136 (136)
2 3izc_a 60S ribosomal protein R 100.0 6.5E-50 2.2E-54 287.0 -8.3 95 1-95 1-136 (136)
3 4a18_N RPL27, ribosomal protei 100.0 6.6E-45 2.3E-49 263.0 3.4 94 1-95 1-144 (144)
4 4a18_E RPL6; ribosome, eukaryo 99.8 7.4E-19 2.5E-23 131.6 5.6 61 1-61 41-118 (191)
5 2joy_A 50S ribosomal protein L 99.6 1.7E-15 5.7E-20 101.9 3.9 49 1-50 1-64 (96)
6 3iz5_N 60S ribosomal protein L 99.5 1.6E-14 5.5E-19 103.0 4.5 50 2-51 4-64 (134)
7 3izc_N 60S ribosomal protein R 99.4 1.4E-13 4.9E-18 98.6 4.1 50 2-51 12-74 (138)
8 3izc_G 60S ribosomal protein R 99.2 7.7E-12 2.6E-16 92.7 4.9 75 3-78 32-123 (176)
9 3j21_5 50S ribosomal protein L 99.2 5.9E-12 2E-16 83.0 3.3 47 1-50 1-63 (83)
10 4a18_F RPL14; ribosome, eukary 99.2 1.6E-11 5.3E-16 86.9 4.9 50 2-51 4-65 (126)
11 3iz5_G 60S ribosomal protein L 99.2 1.6E-11 5.3E-16 93.6 4.4 60 3-62 73-149 (219)
12 2zjr_R 50S ribosomal protein L 78.7 1.1 3.9E-05 30.4 2.2 41 4-44 15-62 (115)
13 1vq8_T 50S ribosomal protein L 78.4 1.7 5.7E-05 30.0 3.0 45 5-51 43-92 (120)
14 2do3_A Transcription elongatio 76.8 2.2 7.4E-05 26.9 3.0 43 2-49 15-57 (69)
15 3j21_U 50S ribosomal protein L 76.2 1.8 6.3E-05 29.7 2.8 24 5-28 46-69 (121)
16 3v2d_Y 50S ribosomal protein L 76.1 2 6.7E-05 29.1 2.8 41 4-44 6-53 (110)
17 2zkr_t 60S ribosomal protein L 76.1 1.9 6.4E-05 30.6 2.8 45 5-51 49-99 (145)
18 3r8s_U 50S ribosomal protein L 75.0 2.5 8.5E-05 28.2 3.1 41 4-44 3-49 (102)
19 3u5e_Y L33, YL33, 60S ribosoma 65.0 5.1 0.00017 27.8 3.0 45 5-51 50-99 (127)
20 2e6z_A Transcription elongatio 64.5 10 0.00035 22.3 4.0 25 5-29 8-32 (59)
21 3iz5_Y 60S ribosomal protein L 63.6 5.4 0.00018 28.5 3.0 24 5-28 49-72 (150)
22 3kbg_A 30S ribosomal protein S 63.1 8 0.00027 28.9 3.9 40 5-44 139-182 (213)
23 4a17_S RPL26, 60S ribosomal pr 61.9 6.3 0.00022 27.7 3.0 45 5-51 49-98 (135)
24 1nz9_A Transcription antitermi 59.1 10 0.00035 21.8 3.2 25 5-29 5-29 (58)
25 2ckk_A KIN17; beta barrel, rib 59.0 5.9 0.0002 27.0 2.4 23 6-28 72-94 (127)
26 2ftc_N Mitochondrial ribosomal 56.3 8.4 0.00029 25.3 2.7 35 9-43 2-43 (96)
27 3j20_E 30S ribosomal protein S 49.0 9.3 0.00032 29.1 2.3 26 5-30 179-204 (243)
28 3p8b_B Transcription antitermi 46.7 20 0.00069 24.1 3.5 25 4-28 91-115 (152)
29 3bbo_W Ribosomal protein L24; 44.5 4.6 0.00016 29.9 -0.0 39 5-43 69-114 (191)
30 3iz6_D 40S ribosomal protein S 42.9 13 0.00045 28.6 2.3 24 5-28 175-198 (265)
31 2xzm_W 40S ribosomal protein S 37.0 20 0.00067 27.6 2.4 24 5-28 177-200 (260)
32 2jvv_A Transcription antitermi 28.8 48 0.0016 22.7 3.2 25 4-28 127-151 (181)
33 3u5c_E RP5, S7, YS6, 40S ribos 25.3 13 0.00044 28.6 -0.3 24 5-28 175-198 (261)
34 3s6e_A RNA-binding protein 39; 20.7 60 0.0021 20.8 2.3 39 41-83 5-43 (114)
No 1
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=100.00 E-value=2.1e-50 Score=289.48 Aligned_cols=95 Identities=74% Similarity=1.186 Sum_probs=56.9
Q ss_pred CcccccCCEEEEEecccccCceEEE----------------------------------------eeeccceEEeeccce
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------------SRVEAFVKLVNYQHL 40 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi----------------------------------------~kik~F~k~~N~~Hl 40 (95)
|||||+||+|||+|+|||||||||| |+|+||+|++|||||
T Consensus 1 M~K~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHl 80 (136)
T 3iz5_a 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHL 80 (136)
T ss_dssp CCSSCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHH
T ss_pred CcccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecce
Confidence 9999999999999999999999999 889999999999999
Q ss_pred eeeceeeeccccccc-ccccccChhHHHHHHHHHHHHHHHHhcCCCceEEeeecCC
Q 039578 41 MPTRYTLNIDLKEVL-TADSLQSKDKKVTACKETKKRLEERFKTGKNCWFFTKLGF 95 (95)
Q Consensus 41 ~pTry~vdi~~k~~v-~~~~~k~~~~k~~a~k~~k~~feeryk~gKnkwfF~KLrF 95 (95)
|||||++||||+++| |+|+|+||++|++|++|++..|||+|++|||+|||+||||
T Consensus 81 mPTRY~vdi~lK~~v~~~d~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kLrF 136 (136)
T 3iz5_a 81 MPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFFTKLRF 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred eccceEeecchhheecCHHHhcChhHhHHHHHHHHHHHHHHHhcCCCceeeeecCC
Confidence 999999999999998 9999999999999999999999999999999999999998
No 2
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=100.00 E-value=6.5e-50 Score=286.99 Aligned_cols=95 Identities=49% Similarity=0.951 Sum_probs=52.7
Q ss_pred CcccccCCEEEEEecccccCceEEE----------------------------------------eeeccceEEeeccce
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------------SRVEAFVKLVNYQHL 40 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi----------------------------------------~kik~F~k~~N~~Hl 40 (95)
|||||+||+|||+|+|||||||||| |+|+||+|+||||||
T Consensus 1 M~Kf~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHl 80 (136)
T 3izc_a 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHL 80 (136)
T ss_dssp ----CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHH
T ss_pred CCccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccce
Confidence 8999999999999999999999999 889999999999999
Q ss_pred eeeceeeecc-cccccccccccChhHHHHHHHHHHHHHHHHhcCCCceEEeeecCC
Q 039578 41 MPTRYTLNID-LKEVLTADSLQSKDKKVTACKETKKRLEERFKTGKNCWFFTKLGF 95 (95)
Q Consensus 41 ~pTry~vdi~-~k~~v~~~~~k~~~~k~~a~k~~k~~feeryk~gKnkwfF~KLrF 95 (95)
|||||++||| ++++||+|+|+||++|++|++|++..|||+|++|||+|||+||||
T Consensus 81 mPTRy~vdi~~~K~~v~~d~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kLrF 136 (136)
T 3izc_a 81 LPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred eeeeeeEcccccccccCHHHhcChhHhHHHHHHHHHHHHHHHhcCCccEeeeecCC
Confidence 9999999999 489999999999999999999999999999999999999999998
No 3
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=100.00 E-value=6.6e-45 Score=262.98 Aligned_cols=94 Identities=45% Similarity=0.780 Sum_probs=91.6
Q ss_pred CcccccCCEEEEEecccccCceEEE----------------------------------------eeeccceEEeeccce
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVI----------------------------------------SRVEAFVKLVNYQHL 40 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi----------------------------------------~kik~F~k~~N~~Hl 40 (95)
||+|++||+|||+|+|||||||||| ++|+||+|++||||+
T Consensus 1 M~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl 80 (144)
T 4a18_N 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHI 80 (144)
T ss_dssp -CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGE
T ss_pred CCccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeE
Confidence 9999999999999999999999999 779999999999999
Q ss_pred eeeceee--ecccccccccccccChhHHHHHHHHHHHHHHHHh--------cCCCceEEeeecCC
Q 039578 41 MPTRYTL--NIDLKEVLTADSLQSKDKKVTACKETKKRLEERF--------KTGKNCWFFTKLGF 95 (95)
Q Consensus 41 ~pTry~v--di~~k~~v~~~~~k~~~~k~~a~k~~k~~feery--------k~gKnkwfF~KLrF 95 (95)
|||||++ ||||+++|++|+|+| ++|++|+++++..|||+| ++|+|+|||+||||
T Consensus 81 ~pTry~v~~di~lK~~v~~d~~~~-~~k~~a~~~~k~~feery~~~~~~~kk~gknkwfF~kLrF 144 (144)
T 4a18_N 81 MPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFVEKYRTINPEEKSASHTKFFFSKLRF 144 (144)
T ss_dssp EEEEEECSTTCCHHHHSCHHHHHT-TCHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHCCCCC
T ss_pred EEeeEEeeccCchhhccCHHHhhh-hHhHHHHHHHHHHHHHHhhhccccccccCCceEeeeecCC
Confidence 9999999 999999999999999 999999999999999999 99999999999998
No 4
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.75 E-value=7.4e-19 Score=131.65 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=52.2
Q ss_pred CcccccCCEEEEEecccccCceEEEee---------------eccceEEeeccceeeeceeeecc-cc-ccccccccc
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVISR---------------VEAFVKLVNYQHLMPTRYTLNID-LK-EVLTADSLQ 61 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi~k---------------ik~F~k~~N~~Hl~pTry~vdi~-~k-~~v~~~~~k 61 (95)
|.++|+||+|||+|+|||||+||||.+ -++|++++|++|+|||||+|||+ ++ ..+|+++|+
T Consensus 41 lr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn~~~vi~TstkvDis~vki~~~~d~YF~ 118 (191)
T 4a18_E 41 LRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFG 118 (191)
T ss_dssp CCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEECGGGEEEEEEECCCTTCCGGGCCGGGSC
T ss_pred hhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEeeeeEEeeeeEeecccccccccCHHHhc
Confidence 578999999999999999999999922 26789999999999999999998 64 347777665
No 5
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.56 E-value=1.7e-15 Score=101.91 Aligned_cols=49 Identities=31% Similarity=0.464 Sum_probs=42.6
Q ss_pred CcccccCCEEEEEecccccCceEEEeee---------ccc------eEEeeccceeeeceeeecc
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVISRV---------EAF------VKLVNYQHLMPTRYTLNID 50 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi~ki---------k~F------~k~~N~~Hl~pTry~vdi~ 50 (95)
|+ +++||+||++++|||+||+|||.++ .|. .|++|++|++||+|++|++
T Consensus 1 M~-~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~ 64 (96)
T 2joy_A 1 MP-AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ 64 (96)
T ss_dssp CC-SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCC
Confidence 78 9999999999999999999999332 222 6999999999999999965
No 6
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=99.49 E-value=1.6e-14 Score=103.02 Aligned_cols=50 Identities=26% Similarity=0.392 Sum_probs=43.0
Q ss_pred cccccCCEEEEEecccccCceEEEeee---------cc--ceEEeeccceeeeceeeeccc
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVISRV---------EA--FVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi~ki---------k~--F~k~~N~~Hl~pTry~vdi~~ 51 (95)
.+|++||+||++++|||||++|||..| +| -.+.+|++||+||+|++||+.
T Consensus 4 ~rfvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~v~Rk~~n~khL~lT~~~v~i~r 64 (134)
T 3iz5_N 4 KRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPDMVRCQINFKRLSLTDIKIDIKR 64 (134)
T ss_dssp CCSCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETTEEEEEEECTTSEEEEEECCCCS
T ss_pred ccccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCCccceeechhHeEEeCEEEeccC
Confidence 479999999999999999999999221 22 278999999999999999985
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=99.40 E-value=1.4e-13 Score=98.55 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=42.9
Q ss_pred cccccCCEEEEEecccccCceEEEeee---------c----cceEEeeccceeeeceeeeccc
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVISRV---------E----AFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi~ki---------k----~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
.+|++||+||++++|||||++|||..+ + .=.+.+|++||+||+|.+||+.
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp~~gV~R~~~n~khL~lT~~~v~i~r 74 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPR 74 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECSSSSCCCEEEECSSSEEEEEECCCCS
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcCCCCcccceechhHeEEecEEEEccC
Confidence 579999999999999999999999221 1 1268999999999999999985
No 8
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=99.22 E-value=7.7e-12 Score=92.70 Aligned_cols=75 Identities=24% Similarity=0.433 Sum_probs=55.9
Q ss_pred ccccCCEEEEEecccccCceEEEee---------eccc------eEEeeccceeeeceeeecc-cc-cccccccccChhH
Q 039578 3 KFLKPNKVVILLQGRYAGRKVVISR---------VEAF------VKLVNYQHLMPTRYTLNID-LK-EVLTADSLQSKDK 65 (95)
Q Consensus 3 k~~kpg~VvivL~GryaGkKaVi~k---------ik~F------~k~~N~~Hl~pTry~vdi~-~k-~~v~~~~~k~~~~ 65 (95)
..+.||+|||+|+||++|+++|+.+ .+|| ++++|.+|+++|+.+|||+ ++ +-+|+++|+-. +
T Consensus 32 ~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~q~~vIaTstkidis~vki~~l~D~YF~k~-k 110 (176)
T 3izc_G 32 ASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE-K 110 (176)
T ss_dssp HHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEESSSSCEECSCCCSSSSCCCSSCCCSSHHHH-H
T ss_pred ccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeeecceEEeeeeeeecccccccccCHHHhhhh-h
Confidence 3688999999999999999999922 4666 7999999999999999988 54 44777778632 2
Q ss_pred HHHHHHHHHHHHH
Q 039578 66 KVTACKETKKRLE 78 (95)
Q Consensus 66 k~~a~k~~k~~fe 78 (95)
..+.+++-...|.
T Consensus 111 ~~k~k~~E~eiF~ 123 (176)
T 3izc_G 111 LTKKEKKEANLFP 123 (176)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccchhhhcc
Confidence 1233333345553
No 9
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.21 E-value=5.9e-12 Score=83.02 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=40.3
Q ss_pred CcccccCCEEEEEecccccCceEEEe----------------eeccceEEeeccceeeeceeeecc
Q 039578 1 MVKFLKPNKVVILLQGRYAGRKVVIS----------------RVEAFVKLVNYQHLMPTRYTLNID 50 (95)
Q Consensus 1 m~k~~kpg~VvivL~GryaGkKaVi~----------------kik~F~k~~N~~Hl~pTry~vdi~ 50 (95)
|. +++||+||++++|||||++|||. +++ .++.|.+|+.||.+.++++
T Consensus 1 m~-~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~--rk~kn~khl~lt~~~i~~~ 63 (83)
T 3j21_5 1 MP-AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNKVK--RRRMNIKHIEPLPQKIDIP 63 (83)
T ss_dssp ---CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECCTTTTCC--CEEESCSSCEEEEEECCCC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECCccCccC--CeEechHHEEEeeEEEECC
Confidence 56 89999999999999999999992 242 7999999999999998865
No 10
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=99.19 E-value=1.6e-11 Score=86.91 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=42.5
Q ss_pred cccccCCEEEEEecccccCceEEEeee---------cc--ceEEeeccceeeeceeee-ccc
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVISRV---------EA--FVKLVNYQHLMPTRYTLN-IDL 51 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi~ki---------k~--F~k~~N~~Hl~pTry~vd-i~~ 51 (95)
.+|+++|+||+++.|+|||+.|||..| +| -...+|++||+||+|.++ |+-
T Consensus 4 ~rfvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~V~Rq~~n~k~l~LT~~~v~~i~r 65 (126)
T 4a18_F 4 NKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEHIVRQVIPIRRVHLTKFQIDNVEL 65 (126)
T ss_dssp CCEEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETTEEEEEEEGGGEEEEEEECTTCCT
T ss_pred ccceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCCcccceeeccceEEcceeccccCC
Confidence 368999999999999999999999221 22 267899999999999998 974
No 11
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.17 E-value=1.6e-11 Score=93.58 Aligned_cols=60 Identities=27% Similarity=0.534 Sum_probs=50.1
Q ss_pred ccccCCEEEEEecccccCceEEEee---------eccc------eEEeeccceeeeceeeecc-cc-cccccccccC
Q 039578 3 KFLKPNKVVILLQGRYAGRKVVISR---------VEAF------VKLVNYQHLMPTRYTLNID-LK-EVLTADSLQS 62 (95)
Q Consensus 3 k~~kpg~VvivL~GryaGkKaVi~k---------ik~F------~k~~N~~Hl~pTry~vdi~-~k-~~v~~~~~k~ 62 (95)
..+.||+|||+|+||++|+++|+.+ .+|| ++++|.+|+++|+.+|||+ ++ +-+|+++|+-
T Consensus 73 ~si~pGtVlIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs~Vki~~l~D~YF~k 149 (219)
T 3iz5_G 73 STITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAR 149 (219)
T ss_dssp HHCSCCSCEECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCSSCCCSSCCCSSHHH
T ss_pred ccccCCCEEEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecCccccccccHHHHhh
Confidence 3689999999999999999999922 3666 7999999999999999987 44 4467777763
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=78.71 E-value=1.1 Score=30.41 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=30.2
Q ss_pred cccCCEEEEEecccccCceEEEeee-----ccceEEeecc--ceeeec
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNYQ--HLMPTR 44 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~~--Hl~pTr 44 (95)
-++.|--|.|++|++.|+.+.|+++ +..+.-+|.. |.-|+.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~ 62 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSM 62 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCc
Confidence 4788999999999999999999665 2335555643 555653
No 13
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=78.38 E-value=1.7 Score=29.97 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=31.2
Q ss_pred ccCCEEEEEecccccCceEEEeeec-----cceEEeeccceeeeceeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE-----AFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik-----~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
++.|-.|+|++|.|.|+.+.|.++- ..+.-+|..- |.--.++.|+
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~kK--~~Gg~~e~pI 92 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEK--TDGEEVPRPL 92 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEEC--SSSCEEECCB
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEeEc--CCCCEEEeee
Confidence 6789999999999999999996552 2344445421 4444666665
No 14
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=76.79 E-value=2.2 Score=26.95 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=32.2
Q ss_pred cccccCCEEEEEecccccCceEEEeeeccceEEeeccceeeeceeeec
Q 039578 2 VKFLKPNKVVILLQGRYAGRKVVISRVEAFVKLVNYQHLMPTRYTLNI 49 (95)
Q Consensus 2 ~k~~kpg~VvivL~GryaGkKaVi~kik~F~k~~N~~Hl~pTry~vdi 49 (95)
-|.++||-=|-|++|||+|--..|.++.. |+-+++.....=+|
T Consensus 15 rK~F~~GDHVkVi~G~~~getGlVV~v~~-----d~v~v~SD~t~~Ei 57 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEE-----NFVILFSDLTMHEL 57 (69)
T ss_dssp CSSCCTTCEEEESSSTTTTCEEEEEEECS-----SCEEEEESSSCSEE
T ss_pred eeeccCCCeEEEeccEEcCceEEEEEEeC-----CEEEEEeCCCCCEE
Confidence 47899999999999999999999988751 44555554444333
No 15
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.23 E-value=1.8 Score=29.74 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
++.|--|+|++|++.|+.+.|..+
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V 69 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEV 69 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEE
T ss_pred cccCCEEEEeecCCCCcEeEEEEE
Confidence 578888999999999999999655
No 16
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=76.13 E-value=2 Score=29.11 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=30.1
Q ss_pred cccCCEEEEEecccccCceEEEeee-----ccceEEeec--cceeeec
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNY--QHLMPTR 44 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~--~Hl~pTr 44 (95)
-++.|--|+|++|++.|+...|+++ +..+.-+|. .|.-|+.
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~ 53 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSP 53 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSS
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCc
Confidence 4788989999999999999999655 233555553 4666665
No 17
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=76.07 E-value=1.9 Score=30.62 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=31.1
Q ss_pred ccCCEEEEEecccccCce-EEEeee-----ccceEEeeccceeeeceeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRK-VVISRV-----EAFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkK-aVi~ki-----k~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
++.|-.|+|++|.+.|+. +.|..+ ...+.-+|. .-|+-..++.|+
T Consensus 49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~--~Kp~G~~~e~PI 99 (145)
T 2zkr_t 49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQR--EKANGTTVHVGI 99 (145)
T ss_dssp CCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEE--ECSSCCEEECCB
T ss_pred cCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEe--EcCCCceEEecc
Confidence 788999999999999999 888555 223455554 334445555554
No 18
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=74.96 E-value=2.5 Score=28.22 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=29.6
Q ss_pred cccCCEEEEEecccccCceEEEeeec----cceEEeec--cceeeec
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRVE----AFVKLVNY--QHLMPTR 44 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~kik----~F~k~~N~--~Hl~pTr 44 (95)
-++.|--|+|++|++.|+...|+++- ..+.-+|. .|.-|+.
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeGvN~~kkh~kp~~ 49 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVP 49 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEETTCSEEEEEECCCS
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeCeEEEEeccccCc
Confidence 36788889999999999999997763 22333442 3776765
No 19
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=64.96 E-value=5.1 Score=27.83 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=30.5
Q ss_pred ccCCEEEEEecccccCceEEEeeec-----cceEEeeccceeeeceeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE-----AFVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik-----~F~k~~N~~Hl~pTry~vdi~~ 51 (95)
++.|--|+|++|.|.|+..-|..+- ..+.-+|.. -|.-..++.|+
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~--K~~G~~~e~pI 99 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKE--KVNGASVPINL 99 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEE--CSSSCEEECCB
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEE--CCCCcEEEccc
Confidence 5678889999999999999996652 224434432 24445666665
No 20
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.53 E-value=10 Score=22.31 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.5
Q ss_pred ccCCEEEEEecccccCceEEEeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik 29 (95)
+.||-.|-|..|-++|-.++|..+.
T Consensus 8 f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCB
T ss_pred CCCCCEEEEeecCCCCCEEEEEEEe
Confidence 6899999999999999999996654
No 21
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=63.63 E-value=5.4 Score=28.53 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.2
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
++.|--|+|++|.|.|+..-|.++
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V 72 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQV 72 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEE
T ss_pred cCCCCEEEEeecCCCCccceEEEE
Confidence 577888999999999999999665
No 22
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=63.11 E-value=8 Score=28.93 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=27.9
Q ss_pred ccCCEEEEEecccccCceEEEeeec----cceEEeeccceeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE----AFVKLVNYQHLMPTR 44 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik----~F~k~~N~~Hl~pTr 44 (95)
+++|..|.+..|+.+|+-++|..+. +|-..+...|-..||
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~~~F~T~ 182 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEGFSTI 182 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEETTTEEEE
T ss_pred cCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEEEEEEee
Confidence 4689999999999999999997664 333344444444443
No 23
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=61.87 E-value=6.3 Score=27.68 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=29.9
Q ss_pred ccCCEEEEEecccccCceEEEeeecc-----ceEEeeccceeeeceeeeccc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVEA-----FVKLVNYQHLMPTRYTLNIDL 51 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik~-----F~k~~N~~Hl~pTry~vdi~~ 51 (95)
++.|--|+|++|.|.|+..-|..+-+ .+.-+| -.-|.-..++.|+
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn--~~K~~G~~~e~pI 98 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKIS--KNKLNGAPYQIPL 98 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCC--EEETTTEEECCCB
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeE--EEcCCCCEEEccc
Confidence 56788899999999999999966522 222223 2234445666665
No 24
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=59.09 E-value=10 Score=21.78 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=22.3
Q ss_pred ccCCEEEEEecccccCceEEEeeec
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVE 29 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik 29 (95)
+++|--|-++.|-|+|-.+.|..+.
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~ 29 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEIN 29 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEE
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEc
Confidence 5789999999999999999997763
No 25
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=58.96 E-value=5.9 Score=26.98 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=19.5
Q ss_pred cCCEEEEEecccccCceEEEeee
Q 039578 6 KPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 6 kpg~VvivL~GryaGkKaVi~ki 28 (95)
++|.-|+||.|.|+|..|.+..+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~i 94 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESI 94 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEE
Confidence 46888899999999999998554
No 26
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=56.32 E-value=8.4 Score=25.28 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=25.6
Q ss_pred EEEEEecccccCceEEEeee-----ccceEEeec--cceeee
Q 039578 9 KVVILLQGRYAGRKVVISRV-----EAFVKLVNY--QHLMPT 43 (95)
Q Consensus 9 ~VvivL~GryaGkKaVi~ki-----k~F~k~~N~--~Hl~pT 43 (95)
--|+|++|++.|+...|+++ +..+.-+|. .|.-|+
T Consensus 2 D~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~ 43 (96)
T 2ftc_N 2 DTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKT 43 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCC
Confidence 35889999999999999655 334666664 566675
No 27
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.96 E-value=9.3 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.8
Q ss_pred ccCCEEEEEecccccCceEEEeeecc
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRVEA 30 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~kik~ 30 (95)
++.|.+|++..|+.+|+-++|..+..
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~ie~ 204 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEIKR 204 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEECCC
T ss_pred ccCCCEEEEECCccceEEEEEEEEEE
Confidence 46899999999999999999977653
No 28
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=46.69 E-value=20 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.2
Q ss_pred cccCCEEEEEecccccCceEEEeee
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki 28 (95)
-+++|--|-+..|-|+|-.|+|..+
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~v 115 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKI 115 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEE
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEE
Confidence 3679999999999999999999555
No 29
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=44.47 E-value=4.6 Score=29.94 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=28.2
Q ss_pred ccCCEEEEEecccccCceEEEeee-----ccceEEeec--cceeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV-----EAFVKLVNY--QHLMPT 43 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki-----k~F~k~~N~--~Hl~pT 43 (95)
++.|--|+|++|++.|+...|.++ +..+.-+|. .|.-|+
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~ 114 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSK 114 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSC
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCc
Confidence 788999999999999999888443 234555554 355554
No 30
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=42.92 E-value=13 Score=28.63 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.5
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
++.|.+|++..|+.+|+=++|..+
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNR 198 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 468999999999999999999655
No 31
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=36.97 E-value=20 Score=27.60 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.2
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
+++|.+|.+..|+.+|+-++|..+
T Consensus 177 fe~G~l~mvtgG~n~GriG~I~~~ 200 (260)
T 2xzm_W 177 LESGNVCYIQQGNNIGRVGIIQHI 200 (260)
T ss_dssp CCSSCEEEECSSTTTTCEEEEEEE
T ss_pred ecCCCEEEEECCccceeEEEEEEE
Confidence 378999999999999999999643
No 32
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=28.85 E-value=48 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.3
Q ss_pred cccCCEEEEEecccccCceEEEeee
Q 039578 4 FLKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 4 ~~kpg~VvivL~GryaGkKaVi~ki 28 (95)
-+.+|-.|-|+.|-|+|-.++|..+
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v 151 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEV 151 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEE
Confidence 3578999999999999999999666
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=25.34 E-value=13 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.3
Q ss_pred ccCCEEEEEecccccCceEEEeee
Q 039578 5 LKPNKVVILLQGRYAGRKVVISRV 28 (95)
Q Consensus 5 ~kpg~VvivL~GryaGkKaVi~ki 28 (95)
+++|.+|++..|+.+|+=++|..+
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHK 198 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 468999999999999999999655
No 34
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=20.67 E-value=60 Score=20.81 Aligned_cols=39 Identities=5% Similarity=0.119 Sum_probs=27.5
Q ss_pred eeeceeeecccccccccccccChhHHHHHHHHHHHHHHHHhcC
Q 039578 41 MPTRYTLNIDLKEVLTADSLQSKDKKVTACKETKKRLEERFKT 83 (95)
Q Consensus 41 ~pTry~vdi~~k~~v~~~~~k~~~~k~~a~k~~k~~feeryk~ 83 (95)
+|||. |-|+.+++.+.+.|++.-.+...+++..|+ +|..
T Consensus 5 ~ps~v---v~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~ 43 (114)
T 3s6e_A 5 LATQC---FQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGG 43 (114)
T ss_dssp CCCSE---EEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTC
T ss_pred CCCcE---EEEECCCChHHccChhHHHHHHHHHHHHHh-ccCC
Confidence 46665 335667777778888888888888888885 4543
Done!