Query 039580
Match_columns 149
No_of_seqs 170 out of 1453
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 19:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.4E-22 4.8E-27 146.3 14.6 144 5-148 25-171 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-21 4.3E-26 141.7 11.1 143 5-148 27-173 (451)
3 2gfp_A EMRD, multidrug resista 99.8 7.3E-21 2.5E-25 135.1 11.2 139 10-148 4-142 (375)
4 4gc0_A D-xylose-proton symport 99.8 3.4E-20 1.2E-24 135.7 13.2 136 12-147 18-179 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.8 1.1E-19 3.7E-24 133.1 13.4 144 5-148 12-164 (491)
6 2xut_A Proton/peptide symporte 99.8 1.3E-18 4.4E-23 128.4 13.0 143 6-148 12-166 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 1.5E-14 5.3E-19 104.5 11.4 143 6-148 252-401 (451)
8 3o7q_A L-fucose-proton symport 99.5 4E-13 1.4E-17 96.8 12.6 139 7-148 259-399 (438)
9 2cfq_A Lactose permease; trans 99.5 1.4E-14 4.9E-19 104.4 4.3 144 5-148 6-156 (417)
10 2cfq_A Lactose permease; trans 99.5 4.5E-13 1.5E-17 96.6 9.8 109 40-148 258-367 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.4 6E-13 2.1E-17 97.4 8.9 138 11-148 288-440 (491)
12 4gc0_A D-xylose-proton symport 99.3 7.9E-11 2.7E-15 86.1 14.1 133 15-147 286-423 (491)
13 2gfp_A EMRD, multidrug resista 99.3 6.8E-13 2.3E-17 94.0 2.3 139 8-149 201-345 (375)
14 2xut_A Proton/peptide symporte 98.9 9.3E-10 3.2E-14 81.1 5.3 122 27-148 320-459 (524)
15 2g9p_A Antimicrobial peptide l 77.7 1.1 3.9E-05 17.9 1.2 15 60-74 2-16 (26)
16 2bzw_B BCL2-antagonist of cell 35.5 7.9 0.00027 15.9 0.0 12 59-70 2-13 (27)
17 4dve_A Biotin transporter BIOY 26.6 1.3E+02 0.0045 19.3 5.7 24 48-71 100-123 (198)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=1.4e-22 Score=146.27 Aligned_cols=144 Identities=17% Similarity=0.077 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHhhhcccccchHHHHhhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHHH
Q 039580 5 TLTMVLVNLAGIMERADESLLPGVYKEVGAALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAAA 84 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 84 (149)
++.+..+.+..+....+.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+....+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44555666667777777778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHhhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhcccc
Q 039580 85 TFLV---AISTTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 85 ~~~~---~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
.+.. .++++++.+++.|++.|++.+...+..++++.|++|+|+|++..++.+...++|..++|.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 788999999999999999999999999999999999999999999999999999998875
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.87 E-value=1.3e-21 Score=141.65 Aligned_cols=143 Identities=13% Similarity=-0.055 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHhhhcccccchHHHHhhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHHH
Q 039580 5 TLTMVLVNLAGIMERADESLLPGVYKEVGAALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAAA 84 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 84 (149)
++.+....+..+....+.....+..|.+.+++ .++.+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 34556667777778888888888899999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----hhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhcccc
Q 039580 85 TFLVAI----STTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 85 ~~~~~~----~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
.+...+ +++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999988 9999999999999999999999999999999999999999999999999999998875
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.85 E-value=7.3e-21 Score=135.10 Aligned_cols=139 Identities=11% Similarity=0.127 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhhhcccccchHHHHhhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHHHHHHHH
Q 039580 10 LVNLAGIMERADESLLPGVYKEVGAALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAAATFLVA 89 (149)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 89 (149)
.+....+..........+..|.+.+++|.|+++.+++.+.+.++..++.++.|+++||+|||+.+..+.....++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 44556667777777778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhcccc
Q 039580 90 ISTTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 90 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
++++++.+.+.|++.|++.+...+..++++.|++|+|+|++..+..+....+|..++|.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999988874
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.84 E-value=3.4e-20 Score=135.68 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=118.5
Q ss_pred HHHHHHHHhhhcccccchHHHHhhcCC--------CcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHH
Q 039580 12 NLAGIMERADESLLPGVYKEVGAALCT--------DPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAA 83 (149)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 83 (149)
.++.+...+|....+...|.+.++++. +..+.+++.+.+.++.+++++++|+++||+|||+++.++.+++.+
T Consensus 18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i 97 (491)
T 4gc0_A 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI 97 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345566677777888888888877643 234578888999999999999999999999999999999999999
Q ss_pred HHHHHH------------------HhhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhc
Q 039580 84 ATFLVA------------------ISTTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSII 145 (149)
Q Consensus 84 ~~~~~~------------------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 145 (149)
+.+..+ +++|++.++++|+++|++.|...+....++.|..|+++|++..+..+.....|..+
T Consensus 98 ~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 98 SGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence 988877 47899999999999999999999999999999999999999999998888887766
Q ss_pred cc
Q 039580 146 GG 147 (149)
Q Consensus 146 gp 147 (149)
++
T Consensus 178 ~~ 179 (491)
T 4gc0_A 178 VY 179 (491)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=1.1e-19 Score=133.12 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHHHHhhhcccccc-hHHHHhh-----cCCCcchhhHHHHHHHHHHHhhhhhHhHhhhh-ccchHHHHHH
Q 039580 5 TLTMVLVNLAGIMERADESLLPGV-YKEVGAA-----LCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVH-HNCAHIIALG 77 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~ 77 (149)
++..+......+......+..... .+++.++ +|.|+.+.+++.+.+.++..+++++.|+++|| +|||+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 345556666666666666555444 4555555 99999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCc--hhhHHHHHHHHhhhhhhcccc
Q 039580 78 AFLWAAATFLVAISTTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESN--RGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~igp~ 148 (149)
..+.+++.+...++++++.+++.|+++|++.+...+...+++.|++|+++ |+++.+.++...++|..++|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 777888888999999988875
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=1.3e-18 Score=128.43 Aligned_cols=143 Identities=16% Similarity=0.079 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHhhhcccccc-hHHHHhhcC------CCcchhhHHHHHHHHHHHhhhhhHhHhhhhc-cchHHHHHH
Q 039580 6 LTMVLVNLAGIMERADESLLPGV-YKEVGAALC------TDPTGLGSLTLFRSIVQSSCYPLAAYLSVHH-NCAHIIALG 77 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~ 77 (149)
+.++.+.+..+......+..... .+++.+++| .++.+.+++.+.+.++..++.++.|+++||+ |||+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34444555566666665544444 445677889 9999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHH---HHHHhhhhhhcccc
Q 039580 78 AFLWAAATFLVAIST-TFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGW---LQLTGNFGSIIGGL 148 (149)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~igp~ 148 (149)
..+.+++.+...+++ +.+.+++.|++.|++.+...+...+++.|++|+++|++..+. .+...++|..++|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888 999999999999999999999999999999999999877666 88888888888875
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.59 E-value=1.5e-14 Score=104.46 Aligned_cols=143 Identities=10% Similarity=-0.040 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHHhhhcccccchHHHHhh-cCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhc--cchHHHHHHHHHHH
Q 039580 6 LTMVLVNLAGIMERADESLLPGVYKEVGAA-LCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHH--NCAHIIALGAFLWA 82 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~ 82 (149)
+.++...+..+.............|.+.++ +|.++.+.++..+...++..++.++.|++.||+ |+|+.+..+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 444555555666666555666677777655 899999999999999999999999999999999 99999888776666
Q ss_pred -HHHHHHHHh--hhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhh-hhhcccc
Q 039580 83 -AATFLVAIS--TTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNF-GSIIGGL 148 (149)
Q Consensus 83 -~~~~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~igp~ 148 (149)
++.....+. ++.+...+..++.|++.+...+....+..|.+|+++|+++.++.+....+ |..++|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555444 36777778888899988888998999999999999999999999999998 8888774
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.50 E-value=4e-13 Score=96.81 Aligned_cols=139 Identities=10% Similarity=-0.078 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHH-Hhh-cCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHHH
Q 039580 7 TMVLVNLAGIMERADESLLPGVYKEV-GAA-LCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAAA 84 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 84 (149)
.++...+..+.............|.+ .++ +|.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33444444555555455555555655 555 5999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhcccc
Q 039580 85 TFLVAISTTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
.+...+.++.+.... ..+.|++.+...+...++..|.+|++ ++++.+... ...+|..++|.
T Consensus 339 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 339 CLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp HHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 877777777665444 47888999989999999999999866 888888766 55678777764
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=1.4e-14 Score=104.43 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHhhhcccccchHHH-HhhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHH
Q 039580 5 TLTMVLVNLAGIMERADESLLPGVYKEV-GAALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAA 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 83 (149)
++.++......+..........++.|.+ .+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+....++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444444444555555555545555554 566899999999999999999999999999999999999999988776654
Q ss_pred HH---HHHHHhhhh-HHHHHHHHhhhhHHHHHHHhHHHHHhhhccc--CchhhHHHHHHHHhhhhhhcccc
Q 039580 84 AT---FLVAISTTF-FQVAVSRGLNGIGLAIVTLAIQSLVADSTDE--SNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 84 ~~---~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
.. ....+.+.. ......+.+.+++.+..++.......++.++ ++|++..+..+....+|..++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 156 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Confidence 22 111122211 1123345555554444443333444444332 45566667766666777666653
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.45 E-value=4.5e-13 Score=96.62 Aligned_cols=109 Identities=8% Similarity=0.100 Sum_probs=90.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhHHHHHHHhHHHHH
Q 039580 40 PTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAAATFLVAISTTFFQVAVSRGLNGIGLAIVTLAIQSLV 119 (149)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 119 (149)
..+.+...+...++..++.++.+++.||+|||+.+..+....++......+.++.+.+.+...+.+++.+...+....+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777778888889999999999999999999888888777766666677777777888888888777777788899
Q ss_pred hhhcccCchhhHHHH-HHHHhhhhhhcccc
Q 039580 120 ADSTDESNRGMAFGW-LQLTGNFGSIIGGL 148 (149)
Q Consensus 120 ~~~~~~~~r~~~~~~-~~~~~~~g~~igp~ 148 (149)
.|.+|++.|+++.+. ++...++|..++|.
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 999999999999998 47777788887774
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=6e-13 Score=97.37 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhhcccccchHHHH-hhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHH-----HHHHHHHHH
Q 039580 11 VNLAGIMERADESLLPGVYKEVG-AALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIA-----LGAFLWAAA 84 (149)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-----~~~~~~~~~ 84 (149)
..+..+.............|.+. +..+.+..+.++......+...++.++.+++.||+|||+... .+..+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 33334444444445555556554 446777678888888899999999999999999999886654 666666666
Q ss_pred HHHHHHhh---------hhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhcccc
Q 039580 85 TFLVAIST---------TFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 85 ~~~~~~~~---------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
........ +.+.......+.|++.+...+..+.+..|..|+++|+++.++.+....+|..++|.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544432 66777788889999999889999999999999999999999999999999888764
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.31 E-value=7.9e-11 Score=86.08 Aligned_cols=133 Identities=11% Similarity=-0.041 Sum_probs=93.2
Q ss_pred HHHHHhhhcccccchHHHHhhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHHHHHHHHHHHHh---
Q 039580 15 GIMERADESLLPGVYKEVGAALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFLWAAATFLVAIS--- 91 (149)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--- 91 (149)
.+.............|.+.++.+.+..+.........+...++.++.+++.||+|||+.+..+.....++.+.....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 33333334444556677788888888777777778888899999999999999999999998888877766554322
Q ss_pred h-hhHHHHHHHHhhhhH-HHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhccc
Q 039580 92 T-TFFQVAVSRGLNGIG-LAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGG 147 (149)
Q Consensus 92 ~-~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp 147 (149)
. +.+...+...+...+ .....+....+.+|.+|++.|+++.|+......++..++|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~ 423 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVS 423 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222222222 2223466778899999999999999999888888877665
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=6.8e-13 Score=94.01 Aligned_cols=139 Identities=13% Similarity=-0.049 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhhcccccchHHH-HhhcCCCcchhhHHHHHHHHHHHhhhhhHhHhhhhccchHHHHHHHHH-HHHHH
Q 039580 8 MVLVNLAGIMERADESLLPGVYKEV-GAALCTDPTGLGSLTLFRSIVQSSCYPLAAYLSVHHNCAHIIALGAFL-WAAAT 85 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~-~~~~~ 85 (149)
+....+..+.............|.+ .+++|.++.+.+...+...++..++.++.+++.||++++. ..+... ...+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~ 278 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGL 278 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444444444444444444455554 4458889999999999999999999999999999998732 233222 22222
Q ss_pred H--HHHH--hhhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhccccC
Q 039580 86 F--LVAI--STTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGLC 149 (149)
Q Consensus 86 ~--~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~~ 149 (149)
. .... .++.+.+.+...+.|++.+...+....+..|..| ++|+++.++.+....+|..++|.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 1 1222 2466777788889999999999999999999997 899999999999999999998864
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=9.3e-10 Score=81.12 Aligned_cols=122 Identities=9% Similarity=0.115 Sum_probs=84.2
Q ss_pred cchHHHHhhcCCCc-chhhHHHHHHHHHHHhhhhhHhHhh----hhccc----hHHHHHHHHHHHHHHHHHHHh------
Q 039580 27 GVYKEVGAALCTDP-TGLGSLTLFRSIVQSSCYPLAAYLS----VHHNC----AHIIALGAFLWAAATFLVAIS------ 91 (149)
Q Consensus 27 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~----~~~~~~~~~~~~~~~~~~~~~------ 91 (149)
...+.+..+.+.+. ...+.......++..+..++.+++. ||.|+ ++.+..+..+.+++.+.....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (524)
T 2xut_A 320 STWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDG 399 (524)
T ss_dssp THHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT
T ss_pred hhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444332 2355555555566666777777664 55543 345666777777666655443
Q ss_pred ---hhhHHHHHHHHhhhhHHHHHHHhHHHHHhhhcccCchhhHHHHHHHHhhhhhhcccc
Q 039580 92 ---TTFFQVAVSRGLNGIGLAIVTLAIQSLVADSTDESNRGMAFGWLQLTGNFGSIIGGL 148 (149)
Q Consensus 92 ---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~igp~ 148 (149)
.+.+.+.+..++.|++.+...+..+.+..|..|+++|++++|+.+....+|..+||.
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 459 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLL 459 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999999999999999999999999999999999999999988874
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=77.73 E-value=1.1 Score=17.90 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=11.8
Q ss_pred hHhHhhhhccchHHH
Q 039580 60 LAAYLSVHHNCAHII 74 (149)
Q Consensus 60 ~~g~l~dr~g~~~~~ 74 (149)
++|.+..++|||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 468899999998653
No 16
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=35.46 E-value=7.9 Score=15.90 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=8.6
Q ss_pred hhHhHhhhhccc
Q 039580 59 PLAAYLSVHHNC 70 (149)
Q Consensus 59 ~~~g~l~dr~g~ 70 (149)
|+.-|.+.||||
T Consensus 2 p~~~~~A~rYGR 13 (27)
T 2bzw_B 2 PPNLWAAQRYGR 13 (27)
T ss_dssp CGGGHHHHHHHH
T ss_pred chhHHHHHHHhH
Confidence 455677888886
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.55 E-value=1.3e+02 Score=19.29 Aligned_cols=24 Identities=8% Similarity=-0.226 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhHhHhhhhccch
Q 039580 48 LFRSIVQSSCYPLAAYLSVHHNCA 71 (149)
Q Consensus 48 ~~~~~~~~~~~~~~g~l~dr~g~~ 71 (149)
.-|.++..+...+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 456778888888999999987543
Done!