BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039581
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score = 31.2 bits (69), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 54  DKVFPRQKFIENP--PSIDFQSLRS----MQSDAVSKLLDSIATIGCFQLVNYGVPVEFI 107
           + VF  +K  + P  P+ID +++ S    ++ + + +L  +    G   L+N+G+P + +
Sbjct: 33  NDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLM 92

Query: 108 NSTMATAGGVFGVSSEKR 125
                     F +S E++
Sbjct: 93  ERVKKAGEEFFSLSVEEK 110


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score = 31.2 bits (69), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 54  DKVFPRQKFIENP--PSIDFQSLRS----MQSDAVSKLLDSIATIGCFQLVNYGVPVEFI 107
           + VF  +K  + P  P+ID +++ S    ++ + + +L  +    G   L+N+G+P + +
Sbjct: 32  NDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLM 91

Query: 108 NSTMATAGGVFGVSSEKR 125
                     F +S E++
Sbjct: 92  ERVKKAGEEFFSLSVEEK 109


>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 30.8 bits (68), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 64  ENPPSIDFQSLRSMQSDAVSKLL-DSIATIGCFQLVNYGVPVEFINSTMATAGGVFGVSS 122
           EN P I    +  ++  A  + + D+    G F+LVN+G+P E  ++      G +    
Sbjct: 2   ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61

Query: 123 EKR 125
           E+R
Sbjct: 62  EQR 64


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 54  DKVFPRQKFIENP--PSIDFQSLRS----MQSDAVSKLLDSIATIGCFQLVNYGVPVEFI 107
           + VF  +K  + P  P+ID +++ S    ++ + + +L  +    G   L+N+G+P +  
Sbjct: 33  NDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLX 92

Query: 108 NSTMATAGGVFGVSSEKR 125
                     F +S E++
Sbjct: 93  ERVKKAGEEFFSLSVEEK 110


>pdb|2VH2|A Chain A, Crystal Structure Of Cell Divison Protein Ftsq From
          Yersinia Enterecolitica
 pdb|2VH2|B Chain B, Crystal Structure Of Cell Divison Protein Ftsq From
          Yersinia Enterecolitica
          Length = 255

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 16 RAPPPSPIASGRRSCVTNDDVLTEFLEHSLRVPDLILPDKVFPRQKFIENPPSIDFQSLR 75
          R P    + +G R   TNDD+    L  SL  P   +   V   Q+ IE  P I   S+R
Sbjct: 25 RLPLSKLVVTGERHYTTNDDIRQAIL--SLGAPGTFMTQDVNIIQQQIERLPWIQQASVR 82

Query: 76 SMQSDAV 82
              D +
Sbjct: 83 KQWPDEL 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,823,783
Number of Sequences: 62578
Number of extensions: 279151
Number of successful extensions: 639
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 5
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)