BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039582
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase
From Potato
Length = 288
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/278 (66%), Positives = 215/278 (77%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSF 131
SLFVY YK+IIKTCGTTKLLL+IP I V+ VRYTRGSFIF GAQ FPHR F
Sbjct: 2 SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61
Query: 132 SEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDR 191
SEEVAVLDG+FGK S A +MGSPD T++WHVYSASA + +PVYTLEMCMTGLDR
Sbjct: 62 SEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDR 121
Query: 192 KRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPE 251
++ASVFYKT ESS A MT SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPE
Sbjct: 122 EKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPE 181
Query: 252 DGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGY 311
DGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+ +D+KGY
Sbjct: 182 DGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGY 241
Query: 312 SCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
S E EE G GS++Y F+R SP+S+LK CW
Sbjct: 242 SLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 279
>pdb|1MSV|A Chain A, The S68a S-adenosylmethionine Decarboxylase Proenzyme
Processing Mutant.
pdb|1MSV|B Chain B, The S68a S-adenosylmethionine Decarboxylase Proenzyme
Processing Mutant
Length = 354
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 12/286 (4%)
Query: 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
FEG EK LEV F A+ G LR++ + + D +LK +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70 ESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFP 127
E+S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +P
Sbjct: 67 EASMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCM 186
HR+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M
Sbjct: 127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILM 181
Query: 187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAV-ST 245
+ LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D T
Sbjct: 182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241
Query: 246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
IH+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 242 IHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284
>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
pdb|1JL0|B Chain B, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
Length = 334
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 12/286 (4%)
Query: 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
FEG EK LEV F A+ G LR++ + + D +LK +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70 ESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFP 127
ESS+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +P
Sbjct: 67 ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCM 186
HR+F EE+ L+ F + + MG N+ W++Y+ E+ P TLE+ M
Sbjct: 127 HRNFQEEIEFLNAIFP----NGAGYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILM 181
Query: 187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAV-ST 245
+ LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D T
Sbjct: 182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241
Query: 246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
I +TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 242 IAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284
>pdb|1MHM|B Chain B, Crystal Structure Of S-Adenosylmethionine Decarboxylase
From Potato
Length = 72
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN
Sbjct: 3 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSN 62
Query: 61 EHLDSYVLSE 70
+++DSYVLSE
Sbjct: 63 DYVDSYVLSE 72
>pdb|3EP3|A Chain A, Human Adometdc D174n Mutant With No Putrescine Bound
pdb|3EP6|A Chain A, Human Adometdc D174n Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
Length = 260
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPNQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216
>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|C Chain C, Human S-Adenosylmethionine Decarboxylase
Length = 267
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217
>pdb|3H0V|A Chain A, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)
Adenosine
pdb|3H0W|A Chain A, Human Adometdc With 5'-Deoxy-5'-[(N-Dimethyl)amino]-8-
Methyl-Adenosine
Length = 266
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216
>pdb|3DZ2|A Chain A, Human Adometdc With
5'-[(3-Aminopropyl)methylamino]-5'deoxy-
8-Methyladenosine
pdb|3DZ4|A Chain A, Human Adometdc With
5'-[(2-Carboxamidoethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3DZ5|A Chain A, Human Adometdc With Covalently Bound 5'-[(2-Aminooxyethyl)
Methylamino]-5'-Deoxy-8-Methyladenosine
pdb|3DZ6|A Chain A, Human Adometdc With 5'-[(4-Aminooxybutyl)methylamino]-
5'deoxy-8-Ethyladenosine
pdb|3DZ7|A Chain A, Human Adometdc With
5'-[(Carboxamidomethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
Length = 267
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217
>pdb|3EP9|A Chain A, Human Adometdc With No Putrescine Bound
Length = 260
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216
>pdb|3EP5|A Chain A, Human Adometdc E178q Mutant With No Putrescine Bound
pdb|3EP8|A Chain A, Human Adometdc E178q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EPA|A Chain A, Human Adometdc E178q Mutant Complexed With Putrescine
Length = 260
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TL++ M+
Sbjct: 61 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLQILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216
>pdb|3EP4|A Chain A, Human Adometdc E256q Mutant With No Putrescine Bound
pdb|3EP7|A Chain A, Human Adometdc E256q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EPB|A Chain A, Human Adometdc E256q Mutant Complexed With Putrescine
Length = 260
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SF+ + L+ +V+ FKP +F L
Sbjct: 176 ITPEPEFSYVSFQT---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216
>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
Length = 267
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + + MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP----NGAGYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYSMN ++ D TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217
>pdb|3DZ3|A Chain A, Human Adometdc F223a Mutant With Covalently Bound S-
Adenosylmethionine Methyl Ester
Length = 267
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S+FV + I+KTCGTT LL ++ + ++S Y+R +F+ Q +PHR
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + A+ MG N+ W++Y+ E+ P TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I +PCGYSMN ++ D TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMANPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217
>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
pdb|1I7M|C Chain C, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
Length = 267
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 12/224 (5%)
Query: 72 SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
S FV + I+KTCGTT LL ++ + ++S Y+R +F Q +PHR
Sbjct: 2 SXFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFXKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
+F EE+ L+ F + + G N+ W++Y+ E+ P TLE+ +
Sbjct: 62 NFQEEIEFLNAIFP----NGAGYCXGR-XNSDCWYLYTLDFPESRVISQPDQTLEILXSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
LD FY + + +T +SGIR ++P S I F+PCGYS N + D TIH
Sbjct: 117 LDPAVXDQFYXKDGVTAKDVTRESGIRDLIPGSVIDATXFNPCGYSXNGXKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
+TPE FSY SFE + L+ +V+ FKP +F L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217
>pdb|1JEN|B Chain B, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|D Chain D, Human S-Adenosylmethionine Decarboxylase
pdb|1I72|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
pdb|3EP3|B Chain B, Human Adometdc D174n Mutant With No Putrescine Bound
pdb|3EP4|B Chain B, Human Adometdc E256q Mutant With No Putrescine Bound
pdb|3EP5|B Chain B, Human Adometdc E178q Mutant With No Putrescine Bound
pdb|3EP6|B Chain B, Human Adometdc D174n Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP7|B Chain B, Human Adometdc E256q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP8|B Chain B, Human Adometdc E178q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP9|B Chain B, Human Adometdc With No Putrescine Bound
pdb|3EPA|B Chain B, Human Adometdc E178q Mutant Complexed With Putrescine
pdb|3EPB|B Chain B, Human Adometdc E256q Mutant Complexed With Putrescine
pdb|3DZ2|B Chain B, Human Adometdc With
5'-[(3-Aminopropyl)methylamino]-5'deoxy-
8-Methyladenosine
pdb|3DZ3|B Chain B, Human Adometdc F223a Mutant With Covalently Bound S-
Adenosylmethionine Methyl Ester
pdb|3DZ4|B Chain B, Human Adometdc With
5'-[(2-Carboxamidoethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3DZ5|B Chain B, Human Adometdc With Covalently Bound
5'-[(2-Aminooxyethyl)
Methylamino]-5'-Deoxy-8-Methyladenosine
pdb|3DZ6|B Chain B, Human Adometdc With 5'-[(4-Aminooxybutyl)methylamino]-
5'deoxy-8-Ethyladenosine
pdb|3DZ7|B Chain B, Human Adometdc With
5'-[(Carboxamidomethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3H0V|B Chain B, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)
Adenosine
pdb|3H0W|B Chain B, Human Adometdc With 5'-Deoxy-5'-[(N-Dimethyl)amino]-8-
Methyl-Adenosine
Length = 67
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
FEG EK LEV F A+ G LR++ + + D +LK +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70 E 70
E
Sbjct: 67 E 67
>pdb|1I7M|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
pdb|1I7M|D Chain D, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
Length = 67
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
FEG EK LEV F A+ G LR++ + + D +LK +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70 E 70
E
Sbjct: 67 E 67
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 230 PCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSV 289
PCG +NS + +++ P+D S+ + E + Y E ++++ F P F +
Sbjct: 5 PCGGRLNSKDAGYITSPGY-PQDYPSHQNCEWIVYAPEPN------QKIVLNFNP-HFEI 56
Query: 290 ALHS---DIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFS 333
H D + GD+ DL G CG + ++GS++Y F+
Sbjct: 57 EKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFT 103
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 126 FPHRSFSEEVAVLDGHFGKFGM-----DSTAFVMGSPDNTKRWHVYSAS 169
F H+ F EE+ + GHFG T++ G D R H + S
Sbjct: 299 FYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,826,263
Number of Sequences: 62578
Number of extensions: 441553
Number of successful extensions: 915
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 19
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)