Query 039582
Match_columns 361
No_of_seqs 134 out of 301
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02524 S-adenosylmethionine 100.0 9E-134 2E-138 986.8 37.2 352 3-356 1-354 (355)
2 TIGR00535 SAM_DCase S-adenosyl 100.0 4E-124 9E-129 912.3 34.3 320 10-335 1-333 (334)
3 PF01536 SAM_decarbox: Adenosy 100.0 2E-122 4E-127 905.0 28.4 325 6-335 1-330 (331)
4 KOG0788 S-adenosylmethionine d 100.0 4E-121 8E-126 875.5 25.6 328 4-336 1-333 (334)
5 TIGR03330 SAM_DCase_Bsu S-aden 95.7 0.038 8.1E-07 47.2 6.9 80 206-292 30-109 (112)
6 PF02675 AdoMet_dc: S-adenosyl 95.0 0.023 5E-07 47.6 3.3 78 206-291 25-102 (106)
7 PRK04025 S-adenosylmethionine 94.7 0.098 2.1E-06 46.5 6.8 82 206-294 31-112 (139)
8 PRK01706 S-adenosylmethionine 94.4 0.11 2.5E-06 45.1 6.2 80 207-293 34-113 (123)
9 PRK02770 S-adenosylmethionine 93.6 0.25 5.4E-06 44.0 6.9 81 206-293 44-124 (139)
10 PRK03124 S-adenosylmethionine 93.6 0.19 4E-06 44.0 6.0 81 206-293 31-111 (127)
11 PRK01236 S-adenosylmethionine 92.6 0.38 8.2E-06 42.4 6.6 82 206-294 32-113 (131)
12 PRK00458 S-adenosylmethionine 90.9 1 2.2E-05 39.5 7.3 81 206-293 42-123 (127)
13 COG1586 SpeD S-adenosylmethion 88.9 0.62 1.3E-05 41.4 4.4 70 222-295 53-122 (136)
14 PRK05462 S-adenosylmethionine 77.5 6.4 0.00014 38.6 6.3 70 223-294 68-170 (266)
15 TIGR03331 SAM_DCase_Eco S-aden 62.7 23 0.0005 34.7 6.5 70 223-294 64-166 (259)
16 PF08149 BING4CT: BING4CT (NUC 31.9 56 0.0012 26.8 3.2 70 217-288 6-77 (80)
17 PRK05462 S-adenosylmethionine 31.4 2.2E+02 0.0049 28.2 7.8 110 41-158 52-208 (266)
18 PF13619 KTSC: KTSC domain 30.1 56 0.0012 24.5 2.8 39 5-49 6-44 (60)
19 TIGR03331 SAM_DCase_Eco S-aden 25.8 3.3E+02 0.0072 26.9 7.9 108 42-157 49-203 (259)
20 KOG3349 Predicted glycosyltran 25.6 1.3E+02 0.0028 27.9 4.7 45 79-123 4-53 (170)
21 COG4894 Uncharacterized conser 23.2 38 0.00081 30.9 0.9 69 70-138 35-113 (159)
22 cd01768 RA RA (Ras-associating 21.3 2.7E+02 0.0059 21.6 5.4 45 246-294 2-52 (87)
No 1
>PLN02524 S-adenosylmethionine decarboxylase
Probab=100.00 E-value=8.6e-134 Score=986.84 Aligned_cols=352 Identities=70% Similarity=1.161 Sum_probs=331.2
Q ss_pred CCCCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEE
Q 039582 3 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVII 82 (361)
Q Consensus 3 ~~~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL 82 (361)
+++++++|||+||||||||++++.+.++.++|||+|||++|++||++|+|+|||+++|++||||||||||||||||||||
T Consensus 1 ~~~~~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL 80 (355)
T PLN02524 1 MPVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIII 80 (355)
T ss_pred CCCCCCCccccceEEEEEEecCcccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEE
Confidence 57899999999999999999876666778899999999999999999999999999999999999999999999999999
Q ss_pred eccCchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCc
Q 039582 83 KTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKR 162 (361)
Q Consensus 83 KTCGTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~ 162 (361)
|||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|++||++|+++|++|+.+|+||+||+++++||
T Consensus 81 KTCGTT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~~~h 160 (355)
T PLN02524 81 KTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQK 160 (355)
T ss_pred EeCCcccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876799
Q ss_pred EEEEecCCCCCC-CCCCceeEEEEecCCCHhhhcccccCCc-chHHHHHHHhCCccccCCCccccccCCCCcccccccCC
Q 039582 163 WHVYSASAEAGS-HVNPVYTLEMCMTGLDRKRASVFYKTNE-SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240 (361)
Q Consensus 163 W~ly~~~~~~~~-~~~~d~TlEilMt~Ld~~~a~~F~~~~~-~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~ 240 (361)
||||+++..... ..++|+|+|||||+||+++|++||++++ ++|.+||+.+||++|+|++.||||+|+|||||||||.|
T Consensus 161 W~lY~a~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~s~~~~t~~sgI~~i~P~~~iddf~F~PCGYSmN~i~g 240 (355)
T PLN02524 161 WHVYSASAHNSSNSNEPVYTLEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKILPESEICDFAFDPCGYSMNGIEG 240 (355)
T ss_pred eEEEeCCCcccccCCCCCeEEEEEccCCCHHHHhhhhhCcccccHHHHHHhhChhhhCCCCeecccccCCCcccccccCC
Confidence 999999876532 2579999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCCCCCceecceEEee
Q 039582 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEE 320 (361)
Q Consensus 241 ~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~~~gy~~~~~~~~~ 320 (361)
++|+|||||||++|||||||||++|....++.+||+|||+||+|++|+||+|+|............+++||+|.+++.++
T Consensus 241 ~~y~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~~~~~~ 320 (355)
T PLN02524 241 DAISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKGRSCQE 320 (355)
T ss_pred CceEEEEECCCCCCeEEEEEeccCCccccCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecCcEEEe
Confidence 99999999999999999999999888888999999999999999999999999876544444455678999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCccccccccccccchh
Q 039582 321 LGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDE 356 (361)
Q Consensus 321 l~~gy~l~y~~f~r~~~~~sp~s~l~~~w~~~~~~~ 356 (361)
|++||+|+|++|+|...|++|||+|+ |+++++++
T Consensus 321 l~~~~~l~y~~f~~~~~~~~~~~~~~--~~~~~~~~ 354 (355)
T PLN02524 321 LPGGGSVVYQTFTATGGCGSPRSTLK--WSENESCE 354 (355)
T ss_pred cCCCcEEEEEEEEecCCCCCchhhhc--cchhcccc
Confidence 99889999999999999999999999 99888654
No 2
>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.
Probab=100.00 E-value=4.2e-124 Score=912.30 Aligned_cols=320 Identities=51% Similarity=0.827 Sum_probs=294.0
Q ss_pred CCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEeccCchh
Q 039582 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTK 89 (361)
Q Consensus 10 FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTT~ 89 (361)
|||+||||||||++++.. .+.++|||+|||++|++||++|+|+|||+++|++|||||||||||||||||||||||||||
T Consensus 1 FEG~EKrLEI~F~~~~~~-~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt 79 (334)
T TIGR00535 1 FEGPEKLLEIWFFEHKKF-IDEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLSESSLFIYDHKIIIKTCGTTK 79 (334)
T ss_pred CCCcceEEEEEEecCCcC-CCCCCChhhCCHHHHHHHHHhhCcEEeeeccCCceeEeEeccceeeEECCEEEEEeCCCch
Confidence 999999999999976543 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHhhc-Cc-eeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCcEEEEe
Q 039582 90 LLLSIPAILKLSESL-SL-SVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS 167 (361)
Q Consensus 90 LL~~l~~ll~la~~~-~~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~W~ly~ 167 (361)
||+|||+||++|+++ |+ .|++|+||||||+||++|++||+||+|||++|+++|+ +|+||+||++++++|||+|+
T Consensus 80 LL~~l~~ll~~a~~~~g~~~v~~v~YsRksf~fP~~Q~~pH~sf~eEV~~L~~~F~----~g~AY~~G~~~~~~~WhlY~ 155 (334)
T TIGR00535 80 LLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAIHRNFSEEVAYLNKFFG----NGKAYVVGDPAKPQKWHLYV 155 (334)
T ss_pred HHHHHHHHHHHHHHhcCcCceeEEEEecccccCcccCCCcCCCHHHHHHHHHHhcC----CCceEEeCCCCCCCceEEEe
Confidence 999999999999988 44 6899999999999999999999999999999999998 79999999999989999999
Q ss_pred cCCCCCC--CCCCceeEEEEecCCCHhhhcccccCCcch----HHHHHHHhCCccccCC-CccccccCCCCcccccccCC
Q 039582 168 ASAEAGS--HVNPVYTLEMCMTGLDRKRASVFYKTNESS----VALMTEDSGIRKILPK-SEICDFEFDPCGYSMNSIEG 240 (361)
Q Consensus 168 ~~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~----~~~~t~~sgi~~l~p~-~~id~f~F~PCGYSmN~i~~ 240 (361)
++.+... ..++|+|+|||||+||+++|++||+++.++ |.+||+.+||++|+|+ +.||||+|+|||||||||.|
T Consensus 156 ~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~h~~~~~~t~~sgI~~i~P~~~~iddf~F~PCGYSmNgi~~ 235 (334)
T TIGR00535 156 AETERETPKIEDPDETLEMLMTGLDKEKASKFFKGPAASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAILG 235 (334)
T ss_pred CCCCccccCCCCCceEeeeecccCCHHHHHhheeCcCCCccchHHHHHHHhChHhhcCCcceeecccccCCcCccccccC
Confidence 8765432 346899999999999999999999999888 9999999999999999 99999999999999999998
Q ss_pred -CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCC-CcccccccC--CCCCceecce
Q 039582 241 -DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVG-DEHGDTFML--DLKGYSCGEK 316 (361)
Q Consensus 241 -~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~-~~~~~~~~~--~~~gy~~~~~ 316 (361)
++|+|||||||++|||||||||+++....++.+||+|||++|+|++|+||+|+|... ....+.... .+.||++.++
T Consensus 236 ~~~Y~TIHITPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~~~~y~~~~~ 315 (334)
T TIGR00535 236 EKAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKNYQNQSFQKLLSINESLPDYIKLDK 315 (334)
T ss_pred CCcEEEEEEcCCCCceEEEEeeccCCcccccHHHHHHHHHHhcCCceEEEEEEecCcccchhhhhhhhccccCCccceeE
Confidence 799999999999999999999988877889999999999999999999999998652 221222222 4689999999
Q ss_pred EEeeCCCCceEEEEEEEec
Q 039582 317 IYEELGNNGSLIYYSFSRA 335 (361)
Q Consensus 317 ~~~~l~~gy~l~y~~f~r~ 335 (361)
+.++++ ||+|+|++|+|.
T Consensus 316 ~~~~~~-~~~l~y~~f~~~ 333 (334)
T TIGR00535 316 QELDLG-DYHLFYQKFQKK 333 (334)
T ss_pred EEecCC-CeeEEEEEEEec
Confidence 999999 699999999885
No 3
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=100.00 E-value=1.8e-122 Score=905.00 Aligned_cols=325 Identities=48% Similarity=0.776 Sum_probs=262.8
Q ss_pred CCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEecc
Q 039582 6 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTC 85 (361)
Q Consensus 6 s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTC 85 (361)
|+.+|||+||||||||.++.....+.+.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||||
T Consensus 1 s~~~FEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~C~Ils~~sn~~~dAYvLSESSLFV~~~kiilKTC 80 (331)
T PF01536_consen 1 STDFFEGPEKRLEIWFSPPSVFSEPSARGLRSIPREFWDEMLDLAGCEILSEISNEHMDAYVLSESSLFVYPHKIILKTC 80 (331)
T ss_dssp -------SEEEEEEEEE----------S-GGGS-HHHHHHHHHHCT-EEEEEEE-SSEEEEEEETEEEEEETTEEEEEEE
T ss_pred CCCCccccceEEEEEEecCCcCCCCCccccccCCHHHHHHHHHhcCCEEEEEEccCceeEEEccCceEEEECCEEEEEEc
Confidence 57899999999999999865545567899999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCcEEE
Q 039582 86 GTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHV 165 (361)
Q Consensus 86 GTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~W~l 165 (361)
||||||+|||+||++|++++.+|+||+||||||+||++|++||++|++||++|+++|+ +|+||++|++|++|||||
T Consensus 81 GtT~Ll~~l~~ll~la~~~~~~v~~v~YsRknf~~P~~Q~~ph~sf~~Ev~~L~~~F~----~G~aY~~G~~~~d~~wyl 156 (331)
T PF01536_consen 81 GTTTLLKALPPLLELAKELGDEVEWVFYSRKNFMFPELQPSPHRSFEEEVAYLDSFFP----SGKAYVMGPLDSDHHWYL 156 (331)
T ss_dssp TTS-GGGGHHHHHHHHHHCC-EEEEEEEEEE--SSGGGS-TTSSSHHHHHHHHHCCHT----SEEEEEECSTTSS-EEEE
T ss_pred cchhHHHHHHHHHHHHHHhccceeEEEEecccCCCcccCCCccCCHHHHHHHHHHHCC----CCcEEEeCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999998 799999999999779999
Q ss_pred EecCCCCCCCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccc-cccCCCCcccccccCCCceE
Q 039582 166 YSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEIC-DFEFDPCGYSMNSIEGDAVS 244 (361)
Q Consensus 166 y~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id-~f~F~PCGYSmN~i~~~~Y~ 244 (361)
|+++......+++|+|||||||+|||++|++||+++.++|.+||+.+||++|+|++.|| ||+|+|||||||||.|+.|+
T Consensus 157 y~~~~~~~~~~~~D~TLEILMt~Ld~~~~~~F~~~~~~~~~~~t~~sgi~~l~p~~~i~~~f~F~PCGYS~N~~~~~~Y~ 236 (331)
T PF01536_consen 157 YTADTPESSSSEPDQTLEILMTDLDPEVASQFYRSESQSGEEITKASGIDDLFPGFEIDDDFLFEPCGYSMNGIDGDRYY 236 (331)
T ss_dssp EEEESSS-S-SS--EEEEEEEECE-HHHHHCCC-BTTB-HHHHHHHTTGGGCSTTSEEE-EEE-SSC-EEEEEECTTEEE
T ss_pred EecCccccccCCCccchhhhhccCCHHHHHHHhcCCCccHHHHHHhhhhhcccCCcccccccccCCccccccCCCCCeEE
Confidence 99987654446899999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCc--ccccccCC--CCCceecceEEee
Q 039582 245 TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE--HGDTFMLD--LKGYSCGEKIYEE 320 (361)
Q Consensus 245 TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~--~~~~~~~~--~~gy~~~~~~~~~ 320 (361)
|||||||++|||||||||+++....++.++|+|||++|||++|+||+|+...... ......++ ..+|++.|++.++
T Consensus 237 TIHVTPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~~t~f~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 316 (331)
T PF01536_consen 237 TIHVTPEEGFSYASFETNVYDFSQESYDDLIRKVLNIFKPGKFSVTLFASSNAEKDSESKLFDLDPKGYGYKRTDRQEYD 316 (331)
T ss_dssp EEEEE--TTS-EEEEEEES--TTTS-CHHHHHHHHHHH-ECEEEEEEEECTSSHHHCCCSHC-BTTTTEEEEEEEEEEEC
T ss_pred EEEECCCCCceEEEEEeccCCcCcCCHHHHHHHHHheeCCcEEEEEEEecCCCcchhhhhccccccccccccceeEEEcc
Confidence 9999999999999999998777788999999999999999999999997432211 12222233 4469999999999
Q ss_pred CCCCceEEEEEEEec
Q 039582 321 LGNNGSLIYYSFSRA 335 (361)
Q Consensus 321 l~~gy~l~y~~f~r~ 335 (361)
|+ ||+|+|++|+|.
T Consensus 317 ~~-~y~lvy~~f~k~ 330 (331)
T PF01536_consen 317 FD-GYDLVYASFEKK 330 (331)
T ss_dssp EC-CEEEEEEEEEE-
T ss_pred CC-CceEEEEEEEEc
Confidence 98 799999999985
No 4
>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-121 Score=875.45 Aligned_cols=328 Identities=55% Similarity=0.877 Sum_probs=306.5
Q ss_pred CCCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEe
Q 039582 4 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIK 83 (361)
Q Consensus 4 ~~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 83 (361)
++++.+|||+||||||||.+|..+.++++.|||+|+|++||+||+.|+|+|||.++|+.+||||||||||||||+|||||
T Consensus 1 ~~~a~~FEG~EKlLEvwF~~~~~~~~~~~~~LR~i~rs~~DeiL~~v~C~IvS~~~n~~~dayvLSESSlFV~~~kiIlK 80 (334)
T KOG0788|consen 1 AVSATGFEGPEKLLEVWFFEPKKFSDKGGKGLRAISKSQWDEILKEVQCTIVSSLKNDEIDAYVLSESSLFVFKRKIILK 80 (334)
T ss_pred CCcccccccchheEEEEEccCccccccCCccccccChhHHHHHhhhhceeEEeecccchhhhheecccceeEeeeEEEEE
Confidence 46778999999999999998887777888999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhchHHHHHHHHhhcC-ceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCc
Q 039582 84 TCGTTKLLLSIPAILKLSESLS-LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKR 162 (361)
Q Consensus 84 TCGTT~LL~~l~~ll~la~~~~-~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~ 162 (361)
|||||+||+||++||+||.++| ..|.+|+||||||+||..|++||++|.+||++|+++|+ +|+||+||+.++.+|
T Consensus 81 TCGTT~lL~sL~pLlkLA~~~~~~~v~~v~YSRknFl~P~~Q~~pH~sf~eEV~~L~~~F~----~g~ay~mG~~~~s~~ 156 (334)
T KOG0788|consen 81 TCGTTLLLKALVPLLKLAGELSFDSVQSVFYSRKNFLFPGAQPYPHTSFDEEVEYLDKFFP----NGKAYCMGLNMNSKC 156 (334)
T ss_pred eccchhHHHHHHHHHHHHHHhcccchHhheeccccccCcccCCCCCcCHHHHHHHHHHhcC----CCceEEecCCCCCCc
Confidence 9999999999999999999999 67999999999999999999999999999999999998 899999996566799
Q ss_pred EEEEecCCCCCC--CCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCCCcccccccCC
Q 039582 163 WHVYSASAEAGS--HVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240 (361)
Q Consensus 163 W~ly~~~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~ 240 (361)
||||+++++... ..+||+|||||||+|||++|.+||+.+..+|.+||+.||||+|+|+++||||+|+||||||||+.+
T Consensus 157 W~lys~~~~~e~~~~~~~d~TlEvlMt~LD~e~a~~Fyk~~~~~a~~mT~~SGI~~I~p~s~iddf~F~PCGYSmN~~~~ 236 (334)
T KOG0788|consen 157 WHLYSASADDESNVIDEPDYTLEVCMTELDPEKASVFYKNNAVSAKEMTDESGIDDILPGSVIDDFAFEPCGYSMNGIDG 236 (334)
T ss_pred eEEEeccccccccccCCCceeHHHHHhhhChhhhheeecccccccccchhhcchhhcCCcceeeccccccccccccCcCC
Confidence 999999876433 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCC--CCCceecceEE
Q 039582 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLD--LKGYSCGEKIY 318 (361)
Q Consensus 241 ~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~--~~gy~~~~~~~ 318 (361)
++|+|||||||++|||||||||++++...++.++|+|||+||+|++|+||+|+|..++..+.....+ ..+|++.+.+.
T Consensus 237 d~y~TIHVTPE~~fSYaSFEt~~~~~~~~~~~~li~kvl~~F~P~kfs~t~f~n~~~~~~~~~~~~~~~~~~~kr~~~~~ 316 (334)
T KOG0788|consen 237 DAYSTIHVTPEDGFSYASFETVGYDQGLLDLSELISKVLNCFKPNKFSVTVFANYGSESYKHLLSKDVERYGYKRRDMQS 316 (334)
T ss_pred ceEEEEEeccccCceEEEEEeeccccccccHHHHHHHHHHhcCcCcEEEEEEeeccchhhhhhhhhhhhhhhheeceeeE
Confidence 9999999999999999999999999999999999999999999999999999998776544333333 34489999999
Q ss_pred eeCCCCceEEEEEEEecC
Q 039582 319 EELGNNGSLIYYSFSRAD 336 (361)
Q Consensus 319 ~~l~~gy~l~y~~f~r~~ 336 (361)
+.|+ +|+|+|++|++..
T Consensus 317 ~~~~-~~~l~y~~f~k~~ 333 (334)
T KOG0788|consen 317 LGFE-SYTLVYQSFTKKG 333 (334)
T ss_pred ecCC-CceEEEEEeeecc
Confidence 9999 6999999999865
No 5
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=95.70 E-value=0.038 Score=47.19 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=59.9
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+..|..-+ .+.-+.|+|.|+|.=+|..+...+||.=||.+ ||.+..=-++ ...++...++-+.+.|+|.
T Consensus 30 ~~a~~~~g~ti~----~~~~h~F~p~Gvt~v~llaESHisiHTwPE~g--yaavDiftCg-~~~~p~~a~~~l~~~f~~~ 102 (112)
T TIGR03330 30 LEAAKVAGATLV----ASHFHKFSPGGVSGVVLLAESHISIHTWPEYG--YAAVDVFTCG-DHSDPEKAFEYLVEALKPK 102 (112)
T ss_pred HHHHHHcCCEEE----EEEEEEcCCCcEEEEEEecccEEEEEeccCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 455555554422 34678999999999999999999999999986 4555542112 2247889999999999999
Q ss_pred eEEEEEe
Q 039582 286 EFSVALH 292 (361)
Q Consensus 286 ~f~vtl~ 292 (361)
+..++..
T Consensus 103 ~~~~~~~ 109 (112)
T TIGR03330 103 RVEVREL 109 (112)
T ss_pred eEEEEEE
Confidence 9998743
No 6
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=94.97 E-value=0.023 Score=47.56 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=57.2
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+..|+.-+ .+.-+.|+|=|+|.=++..+...+||.=||.++-++-.=|. + ..+...+++.+.+.|+|.
T Consensus 25 ~~a~~~~g~~~~----~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~~avDiftC--~--~~~p~~a~~~l~~~f~~~ 96 (106)
T PF02675_consen 25 RDAAKAAGLTVL----SISFHKFEPQGVTGVALLAESHISIHTWPEHGYAAVDIFTC--G--EFDPEKAIEYLKKAFKPD 96 (106)
T ss_dssp HHHHHHCT-EEE----EEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEE--S--THHHHHHHHHHHHHHT-S
T ss_pred HHHHHHcCCEEE----EEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCeEEEEEEEc--C--CCCHHHHHHHHHHHhCCC
Confidence 455556666443 24778999999999999999999999999999544444343 2 247888999999999999
Q ss_pred eEEEEE
Q 039582 286 EFSVAL 291 (361)
Q Consensus 286 ~f~vtl 291 (361)
++.++.
T Consensus 97 ~~~~~~ 102 (106)
T PF02675_consen 97 KVKITE 102 (106)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999884
No 7
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=94.75 E-value=0.098 Score=46.52 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=62.1
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+..|..-+ .+..+.|+|=|+|.-+|..+...+||.=||.+ ||.+..=-++ ...+....++.+.+.|+|.
T Consensus 31 ~~Aa~~~gatil----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDIftCg-~~~~p~~a~~~L~~~f~~~ 103 (139)
T PRK04025 31 LEAAKRGNMEVK----ASYFFKFSPTGVSGVVIVAESHISVHTWPEKG--YAALDVYTCG-EKADPEKAVDYILEQFKAK 103 (139)
T ss_pred HHHHHHcCCeEE----EEEEEEcCCCcEEEEEEeccceEEEEecccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 455555664432 35779999999999999999999999999975 4555541122 2247889999999999999
Q ss_pred eEEEEEeec
Q 039582 286 EFSVALHSD 294 (361)
Q Consensus 286 ~f~vtl~~~ 294 (361)
+..++.+..
T Consensus 104 ~~~~~~l~R 112 (139)
T PRK04025 104 YAHVSEIKR 112 (139)
T ss_pred eEEEEEEeC
Confidence 999995543
No 8
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=94.37 E-value=0.11 Score=45.14 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=60.6
Q ss_pred HHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCe
Q 039582 207 LMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAE 286 (361)
Q Consensus 207 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~ 286 (361)
+..+..|..-+ .+..+.|+|=|.|.=+|..+...+||.=||.+ ||.+..=-++ ...++...++.+.+.|+|.+
T Consensus 34 ~aa~~~g~tiv----~~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~~ 106 (123)
T PRK01706 34 EAADLSGAHVL----NVSTKEFDPQGVTVLVLLSESHLSIHTYPEKN--FAAIDCYTCG-TTVEPQIAIDYIVSILKPNE 106 (123)
T ss_pred HHHHHcCCeEE----EEEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence 44444554322 35779999999999999999999999999976 6666652122 22478899999999999999
Q ss_pred EEEEEee
Q 039582 287 FSVALHS 293 (361)
Q Consensus 287 f~vtl~~ 293 (361)
..++...
T Consensus 107 ~~~~~~~ 113 (123)
T PRK01706 107 MHIKRLI 113 (123)
T ss_pred EEEEEEe
Confidence 9998543
No 9
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=93.59 E-value=0.25 Score=43.98 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+..|..-+ .+..+.|+|=|+|.-+|..+...+||.=||.+ ||.+..=-++ ...+....++.+.+.|+|.
T Consensus 44 ~~Aa~~~gativ----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~ 116 (139)
T PRK02770 44 TEAAKRAGATLL----NLITHRFEPQGVTALALLAESHISIHTWPESG--YAAVDVFTCG-DHTMPEKACQYLIEELMAK 116 (139)
T ss_pred HHHHHHcCCEEE----EEEeEEcCCCeEEEEEEecccEEEEEeCcCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 455556664422 35789999999999999999999999999975 5555541122 2347889999999999999
Q ss_pred eEEEEEee
Q 039582 286 EFSVALHS 293 (361)
Q Consensus 286 ~f~vtl~~ 293 (361)
+..++-+.
T Consensus 117 ~~~~~~~~ 124 (139)
T PRK02770 117 RHSLRSIE 124 (139)
T ss_pred eEEEEEEe
Confidence 99998544
No 10
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=93.55 E-value=0.19 Score=44.03 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+.+|.. ++ .+..+.|+|=|.|.=+|..+...+||.=||. .||.+..=-++ ...+....++.+.+.|+|.
T Consensus 31 ~~a~~~~g~t-il---~~~~h~F~p~GvTgv~llaESHisIHTwPE~--gyaavDiftCg-~~~~p~~a~~~L~~~f~~~ 103 (127)
T PRK03124 31 VDAALEAGAE-VR---EVAFHKFSPQGVSGVVVISESHLTIHTWPEL--GYAAVDVFTCG-DRVDPWDACNYIAEGLGAK 103 (127)
T ss_pred HHHHHHcCCe-EE---EEEeEEcCCCcEEEEEEeeccEEEEEeCccC--CeEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 3455555643 22 3577999999999999999999999999996 56666652122 2247889999999999999
Q ss_pred eEEEEEee
Q 039582 286 EFSVALHS 293 (361)
Q Consensus 286 ~f~vtl~~ 293 (361)
+..++.+.
T Consensus 104 ~~~~~~~~ 111 (127)
T PRK03124 104 TREAIELK 111 (127)
T ss_pred eEEEEEEe
Confidence 99988544
No 11
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=92.65 E-value=0.38 Score=42.39 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=61.4
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+.+|..- + .+..+-|+|=|.|.=+|..+...+||.=||. .||.+..=-++ ...+....++-+.+.|+|.
T Consensus 32 ~~aa~~~g~ti-v---~~~~h~F~p~GvTgv~lLaESHisIHTwPE~--gyaavDiftCg-~~~~p~~a~~~L~~~f~~~ 104 (131)
T PRK01236 32 EGAVKYAELTK-I---SSHYYQFNPHGATGVVLLAESHISIHTWPEY--GLVTLDVYTCG-DPSKADKAFEYIIKKLKPK 104 (131)
T ss_pred HHHHHHCCCEE-E---EEEEEEcCCCcEEEEEEeeccEEEEEeCccC--CeEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 45555566432 2 3467899999999999999999999999996 45666552122 2246889999999999999
Q ss_pred eEEEEEeec
Q 039582 286 EFSVALHSD 294 (361)
Q Consensus 286 ~f~vtl~~~ 294 (361)
+..++.+..
T Consensus 105 ~~~~~~l~R 113 (131)
T PRK01236 105 RVDHKVLER 113 (131)
T ss_pred eEEEEEEec
Confidence 999985443
No 12
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=90.92 E-value=1 Score=39.47 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=60.5
Q ss_pred HHHHHHhCCccccCCCccccccCCC-CcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDP-CGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKP 284 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~P-CGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P 284 (361)
.+..+..|..-+ .+.-+.|.| =|+|.=+|..+...+||.=||.++-.+-.=|. + ...+....++.+.+.|+|
T Consensus 42 ~~aa~~~g~til----~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~gyaavDiftC--g-~~~~p~~a~~~L~~~f~~ 114 (127)
T PRK00458 42 KEAAKIANMTLL----DIKSWKFGKKGGVSVIALVLESHIAIHTWPEYNFATVDVYTC--G-EHTDPQKAFEYIVSKLKP 114 (127)
T ss_pred HHHHHHcCCEEE----EEEEEECCCCCCEEEEEEecccEEEEEeCcCCCcEEEEEEec--C-CCCCHHHHHHHHHHHhCC
Confidence 455555664432 346789998 89999999999999999999975544433333 2 223788999999999999
Q ss_pred CeEEEEEee
Q 039582 285 AEFSVALHS 293 (361)
Q Consensus 285 ~~f~vtl~~ 293 (361)
.+..++.+.
T Consensus 115 ~~~~~~~~~ 123 (127)
T PRK00458 115 KRYTVNYAD 123 (127)
T ss_pred CEEEEEEEe
Confidence 999998654
No 13
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=88.93 E-value=0.62 Score=41.43 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=57.4
Q ss_pred ccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecC
Q 039582 222 EICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 295 (361)
Q Consensus 222 ~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~ 295 (361)
.+.-+.|.|=|=|-=.|..+..-|||.=||-+ ||..+.--+. ...+...-++-+++-|+|.++++- ..++
T Consensus 53 ~~~~~~f~p~GvSgvvliaESHitiHTwPEyg--~A~iDVyTCG-~~~~p~~A~~yi~~~L~p~~v~v~-~~~R 122 (136)
T COG1586 53 NIAFHKFSPQGVSGVVLIAESHITIHTWPEYG--YATIDVYTCG-DHIDPLKAFNYLVEQLKPKRVTVD-YRDR 122 (136)
T ss_pred EEEeEEecCCCeEEEEEEEeeeeeEecCCccC--ceEEEEEccC-CCCCHHHHHHHHHHHhCCcEEEEE-EEec
Confidence 36889999999999999999999999999999 8888862111 125778889999999999999987 3443
No 14
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=77.49 E-value=6.4 Score=38.62 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=55.1
Q ss_pred cccccCCCCcccccccCCC---------------------------ceEEEEecCCC----CCe--eEEEeecCCCcCCC
Q 039582 223 ICDFEFDPCGYSMNSIEGD---------------------------AVSTIHVTPED----GFS--YASFEAVGYDFEVV 269 (361)
Q Consensus 223 id~f~F~PCGYSmN~i~~~---------------------------~Y~TIHVTPE~----~~S--YaSFETn~~~~~~~ 269 (361)
|.-+.|+|=|=|..+|..+ ..-|||.=||. |++ ||....-.+ ...
T Consensus 68 i~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~GiatFrAdIDVfTC--G~i 145 (266)
T PRK05462 68 IARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGICTFRADIDVSTC--GVI 145 (266)
T ss_pred eeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCccceeeEEEEEcC--CCC
Confidence 4668889999999887766 88999999998 455 577676322 335
Q ss_pred CHHHHHHHHhhccCCCeEEEEEeec
Q 039582 270 KLTPLLERVLACFKPAEFSVALHSD 294 (361)
Q Consensus 270 ~~~~lv~~vL~~F~P~~f~vtl~~~ 294 (361)
++...++-+...|.|...++.....
T Consensus 146 sPlkAl~yLi~sF~sd~vtidy~vR 170 (266)
T PRK05462 146 SPLKALNYLIHSFESDIVTIDYRVR 170 (266)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEec
Confidence 7888899999999999999985554
No 15
>TIGR03331 SAM_DCase_Eco S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form. Members of this protein family are the single chain precursor of the S-adenosylmethionine decarboxylase as found in Escherichia coli. This form shows a substantially different architecture from the form shared by the Archaea, Bacillus, and many other species (TIGR03330). It shows little or no similarity to the form found in eukaryotes (TIGR00535).
Probab=62.68 E-value=23 Score=34.70 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=53.7
Q ss_pred cccccCCCCcccccccCCC---------------------------ceEEEEecCCCC--Cee----EEEeecCCCcCCC
Q 039582 223 ICDFEFDPCGYSMNSIEGD---------------------------AVSTIHVTPEDG--FSY----ASFEAVGYDFEVV 269 (361)
Q Consensus 223 id~f~F~PCGYSmN~i~~~---------------------------~Y~TIHVTPE~~--~SY----aSFETn~~~~~~~ 269 (361)
+.-+.|+|=|=|..+|..+ ...|||.=||.+ -.| |..+.-. -...
T Consensus 64 i~~qdf~PqGvSvtvLIaE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITIHTwPE~hp~~Gi~tFrAdIDVfT--CG~i 141 (259)
T TIGR03331 64 IARQDYEPQGASVTILISEEPVEPEKIDNSESPGPLPDAVVAHLDKSHITVHTYPESHPDNGISTFRADIDVST--CGVI 141 (259)
T ss_pred eeeeecCCCCEEEEEEEeccccccccccccccCCCCccchhcccccCeEEEEcCCCCCCCCCccceeEEEEEec--CCCC
Confidence 4568889999999888765 789999999984 133 6666532 2335
Q ss_pred CHHHHHHHHhhccCCCeEEEEEeec
Q 039582 270 KLTPLLERVLACFKPAEFSVALHSD 294 (361)
Q Consensus 270 ~~~~lv~~vL~~F~P~~f~vtl~~~ 294 (361)
++...++-+...|+|...++.....
T Consensus 142 sPlkAl~yLi~sf~sd~vtidy~vR 166 (259)
T TIGR03331 142 SPLKALNYLIHSFESDIVTIDYRVR 166 (259)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEec
Confidence 7888899999999999999986554
No 16
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=31.91 E-value=56 Score=26.76 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=43.8
Q ss_pred ccCCCccccccCCCCccccccc-CCCceEEEEecCCC-CCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEE
Q 039582 217 ILPKSEICDFEFDPCGYSMNSI-EGDAVSTIHVTPED-GFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFS 288 (361)
Q Consensus 217 l~p~~~id~f~F~PCGYSmN~i-~~~~Y~TIHVTPE~-~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~ 288 (361)
..|+..|.+..|-|.===. || ....|.+|=| |.. .--|-|+|.|.+.-+.+--..=|+++|+..+|..-+
T Consensus 6 ~~~~~~v~~~~F~PfEDvL-gvGh~~G~sSiiV-PGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~ 77 (80)
T PF08149_consen 6 LKPGSPVESLRFCPFEDVL-GVGHSKGFSSIIV-PGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMIT 77 (80)
T ss_pred cCCCCeeeeeEEechHHee-EeeccCceeEEec-cCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCcccee
Confidence 4566666677776631100 11 1235777755 444 346889999977544444556699999999998654
No 17
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=31.43 E-value=2.2e+02 Score=28.17 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=72.2
Q ss_pred HHHHHHhcccCCeEEeeeccCc----ce-eeeccC---------------------------ceeEE--eCCE-------
Q 039582 41 HQLDEILKPAECTIVSSLSNEH----LD-SYVLSE---------------------------SSLFV--YPYK------- 79 (361)
Q Consensus 41 ~~w~~~L~~a~C~IlS~~sn~~----~D-AYvLSE---------------------------SSLFV--~~~k------- 79 (361)
+-+.++.+.++++||+...-+. +- .-|+|| |=+=| ||..
T Consensus 52 ~IL~eaa~~iGAtILni~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~Gia 131 (266)
T PRK05462 52 EILTEVCSIIGANILNIARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGIC 131 (266)
T ss_pred HHHHHHHHHcCCEEeeeeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCcc
Confidence 4466677888999998765432 21 345666 75544 7765
Q ss_pred -----EEEeccCchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCC-hHHHHHHHHhhhCCCCCCcceEE
Q 039582 80 -----VIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRS-FSEEVAVLDGHFGKFGMDSTAFV 153 (361)
Q Consensus 80 -----iILKTCGTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~~~F~~~~~~G~aY~ 153 (361)
|=+-|||....+.|+..| ++.++-++..+.|-++-|...-.-. +- ..+++.-++.|.+. ..-..|-
T Consensus 132 tFrAdIDVfTCG~isPlkAl~yL---i~sF~sd~vtidy~vRGftrdv~G~---k~fidh~i~sIq~~i~~--~~~~~y~ 203 (266)
T PRK05462 132 TFRADIDVSTCGVISPLKALNYL---IHSFESDIVTIDYRVRGFTRDINGK---KHFIDHEINSIQNFISE--DTKSLYD 203 (266)
T ss_pred ceeeEEEEEcCCCCCHHHHHHHH---HHHhCCCeEEEEEEecCCccCCCCe---EeeccCccHHHHhhcCH--HHHhhcc
Confidence 468999999999999999 5666657777888877765443332 33 56677777777753 1234454
Q ss_pred ecCCC
Q 039582 154 MGSPD 158 (361)
Q Consensus 154 ~G~~~ 158 (361)
|=++|
T Consensus 204 ~~Dvn 208 (266)
T PRK05462 204 MIDVN 208 (266)
T ss_pred eEEec
Confidence 44443
No 18
>PF13619 KTSC: KTSC domain
Probab=30.13 E-value=56 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcc
Q 039582 5 VSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKP 49 (361)
Q Consensus 5 ~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~ 49 (361)
....++.-..+.|||.|.... .---..+|.+.|+.+|.+
T Consensus 6 I~~v~Yd~~~~~L~V~F~~G~------~Y~Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 6 IRSVGYDPETRTLEVEFKSGS------VYRYFGVPPEVYEALLNA 44 (60)
T ss_pred ccEEeECCCCCEEEEEEcCCC------EEEECCCCHHHHHHHHcC
Confidence 344567778899999997422 112458999999999974
No 19
>TIGR03331 SAM_DCase_Eco S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form. Members of this protein family are the single chain precursor of the S-adenosylmethionine decarboxylase as found in Escherichia coli. This form shows a substantially different architecture from the form shared by the Archaea, Bacillus, and many other species (TIGR03330). It shows little or no similarity to the form found in eukaryotes (TIGR00535).
Probab=25.79 E-value=3.3e+02 Score=26.88 Aligned_cols=108 Identities=15% Similarity=0.258 Sum_probs=71.3
Q ss_pred HHHHHhcccCCeEEeeeccCc----ce-eeeccC---------------------------ceeEE--eCCE--------
Q 039582 42 QLDEILKPAECTIVSSLSNEH----LD-SYVLSE---------------------------SSLFV--YPYK-------- 79 (361)
Q Consensus 42 ~w~~~L~~a~C~IlS~~sn~~----~D-AYvLSE---------------------------SSLFV--~~~k-------- 79 (361)
-+.++.+.++++||+...-+. +- .-|+|| |=+=| ||..
T Consensus 49 IL~eaa~~iGAtILni~~qdf~PqGvSvtvLIaE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITIHTwPE~hp~~Gi~t 128 (259)
T TIGR03331 49 ILTDVAEIIGANILNIARQDYEPQGASVTILISEEPVEPEKIDNSESPGPLPDAVVAHLDKSHITVHTYPESHPDNGIST 128 (259)
T ss_pred HHHHHHHHcCCEEeeeeeeecCCCCEEEEEEEeccccccccccccccCCCCccchhcccccCeEEEEcCCCCCCCCCccc
Confidence 456667788999998765432 22 346677 65444 7765
Q ss_pred ----EEEeccCchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCC-hHHHHHHHHhhhCCCCCCcceEEe
Q 039582 80 ----VIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRS-FSEEVAVLDGHFGKFGMDSTAFVM 154 (361)
Q Consensus 80 ----iILKTCGTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~~~F~~~~~~G~aY~~ 154 (361)
|=+-|||....+.|+..| ++.+.-++..+.|-++-|...-.-. +- ..+++.-++.|.+. ..-..|-|
T Consensus 129 FrAdIDVfTCG~isPlkAl~yL---i~sf~sd~vtidy~vRGftRdi~g~---k~fidh~i~siq~~i~~--~~~~~y~~ 200 (259)
T TIGR03331 129 FRADIDVSTCGVISPLKALNYL---IHSFESDIVTIDYRVRGFTRDIDGR---KHFIDHKINSIQNYISE--DTKEKYQM 200 (259)
T ss_pred eeEEEEEecCCCCCHHHHHHHH---HHHhCCCeEEEEEEecCCCCCCCce---EeeccCccHHHHhhccH--HHHhhcce
Confidence 358999999999999999 5666657778888888886443322 33 45677777777753 12334544
Q ss_pred cCC
Q 039582 155 GSP 157 (361)
Q Consensus 155 G~~ 157 (361)
=++
T Consensus 201 ~dv 203 (259)
T TIGR03331 201 IDV 203 (259)
T ss_pred EEe
Confidence 443
No 20
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.65 E-value=1.3e+02 Score=27.89 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=32.7
Q ss_pred EEEEeccCchh---hhchH--HHHHHHHhhcCceeeEEEEccccccCCCC
Q 039582 79 KVIIKTCGTTK---LLLSI--PAILKLSESLSLSVRSVRYTRGSFIFAGA 123 (361)
Q Consensus 79 kiILKTCGTT~---LL~~l--~~ll~la~~~~~~v~~v~YsRknf~fP~~ 123 (361)
+-+.-|||||. |+.|+ +..++-..++|..=-.+-|-|+++.+|+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~ 53 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDP 53 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCH
Confidence 45667999997 44554 56777777888776667888998777754
No 21
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=23.16 E-value=38 Score=30.92 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=59.0
Q ss_pred CceeEEeCCEEEEeccCchhhhchHHHHHHHHhhcCc---------eeeEEEEccccccCCCCCCCCCCC-hHHHHHHH
Q 039582 70 ESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSL---------SVRSVRYTRGSFIFAGAQPFPHRS-FSEEVAVL 138 (361)
Q Consensus 70 ESSLFV~~~kiILKTCGTT~LL~~l~~ll~la~~~~~---------~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L 138 (361)
|-|-|+-+++++|+-...++|.+-=.+|+.+...+.+ ...++.|+|--|-+|..--..|.+ |.+|...+
T Consensus 35 eGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~~~~vrKK~tf~Rdk~e~d~~~~eihGNi~d~efkl~ 113 (159)
T COG4894 35 EGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGTVCEVRKKVTFSRDKFEIDGLNWEIHGNIWDDEFKLT 113 (159)
T ss_pred eeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCCCEEEEEEEEEEEeeeEEEcCCCeEEecceeceEEEEe
Confidence 4789999999999999999999998999988877632 247889999999999999999999 88876544
No 22
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=21.30 E-value=2.7e+02 Score=21.60 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=31.5
Q ss_pred EEecCCC--CCeeEEEeecCCCcCCCCHHHHHHHHhhcc----CCCeEEEEEeec
Q 039582 246 IHVTPED--GFSYASFEAVGYDFEVVKLTPLLERVLACF----KPAEFSVALHSD 294 (361)
Q Consensus 246 IHVTPE~--~~SYaSFETn~~~~~~~~~~~lv~~vL~~F----~P~~f~vtl~~~ 294 (361)
|+|-+++ +.+|.|.... ......+||+.+++.| .|..|.+.-...
T Consensus 2 ikV~~~~~~~~~~kti~V~----~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~ 52 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVS----KDTTAQDVIQQLLKKFGLDDDPEDYALVEVLG 52 (87)
T ss_pred EEEeCCcCCCccEEEEEEC----CCCCHHHHHHHHHHHhCCcCCcccEEEEEEEC
Confidence 5555444 5778888773 3446889999999999 467888775443
Done!