Query 039582
Match_columns 361
No_of_seqs 134 out of 301
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jl0_A Adometdc, S-adenosylmet 100.0 2E-124 7E-129 915.6 36.4 323 5-337 2-330 (334)
2 1mhm_A Adometdc, samdc, S-aden 100.0 2E-112 8E-117 816.8 24.2 288 71-358 1-288 (288)
3 1mhm_B Adometdc, samdc, S-aden 100.0 5.2E-31 1.8E-35 205.9 6.0 70 1-70 3-72 (72)
4 1vr7_A Adometdc, samdc, S-aden 95.0 0.026 9E-07 49.0 5.1 102 182-294 20-124 (142)
5 2iii_A S-adenosylmethionine de 94.4 0.028 9.5E-07 48.4 3.8 82 206-294 32-113 (135)
6 3vk8_A Probable formamidopyrim 21.9 11 0.00036 36.0 -1.8 74 35-129 191-291 (295)
7 2iii_A S-adenosylmethionine de 21.3 3.3E+02 0.011 22.8 7.7 82 40-124 28-122 (135)
8 2bp3_S Platelet glycoprotein I 14.5 57 0.002 20.1 0.9 8 70-77 9-16 (26)
9 2k6g_A Replication factor C su 13.5 1.3E+02 0.0045 24.2 3.2 35 35-70 44-78 (109)
10 3d2l_A SAM-dependent methyltra 12.2 1.4E+02 0.0049 25.2 3.2 32 35-66 198-229 (243)
No 1
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=100.00 E-value=2.2e-124 Score=915.63 Aligned_cols=323 Identities=32% Similarity=0.531 Sum_probs=288.9
Q ss_pred CCCCCCCCcceEEEEEeeCCCCCCCCC-CCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEe
Q 039582 5 VSAIGFEGYEKRLEVSFFEPGVFADPG-GRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIK 83 (361)
Q Consensus 5 ~s~~~FEG~EK~LEi~F~~~~~~~~~~-~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 83 (361)
.++.+|||+||||||||.++.. ..+. ..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||
T Consensus 2 ds~~~FEG~EKrLEI~F~~~~~-~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK 80 (334)
T 1jl0_A 2 EAAHFFEGTEKLLEVWFSRQQP-DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK 80 (334)
T ss_dssp ---CCCCCCCEEEEEEEECCC------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred CcCCCCcccceEEEEEEecCCc-cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence 5889999999999999997531 2233 3459999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhchHHHHHHHHhhc-Cc-eeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCC
Q 039582 84 TCGTTKLLLSIPAILKLSESL-SL-SVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTK 161 (361)
Q Consensus 84 TCGTT~LL~~l~~ll~la~~~-~~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~ 161 (361)
||||||||+|||+||++|+++ |+ .|++|+||||||+||++|++||++|+|||++|+++|+ +|+||+||++|+ |
T Consensus 81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~----~G~aY~~G~~~~-~ 155 (334)
T 1jl0_A 81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFP----NGAGYCMGRMNS-D 155 (334)
T ss_dssp ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCS----SEEEEEESCTTS-S
T ss_pred eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcC----CCcEEEeCCCCC-C
Confidence 999999999999999999765 88 7999999999999999999999999999999999997 799999999997 7
Q ss_pred cEEEEecCCCCC-CCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCCCcccccccCC
Q 039582 162 RWHVYSASAEAG-SHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240 (361)
Q Consensus 162 ~W~ly~~~~~~~-~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~ 240 (361)
|||||+++.+.. ...++|+|||||||+||+++|++||+++.++|.+||+.+||++|+|++.||||+|+|||||||||.+
T Consensus 156 hw~ly~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~a~~~t~~sgi~~i~P~~~iddf~F~PCGYSmNgi~~ 235 (334)
T 1jl0_A 156 CWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKS 235 (334)
T ss_dssp CEEEEEECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEECT
T ss_pred eeEEEecCCcccccCCCCcceEEEEccCCCHHHHhhhhcCcCCcHHHHHHHhChhhcCCCcEeeccccCCccceeccccC
Confidence 999999987653 2457899999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCC-CCCceecceEE
Q 039582 241 -DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLD-LKGYSCGEKIY 318 (361)
Q Consensus 241 -~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~-~~gy~~~~~~~ 318 (361)
++|+|||||||++||||||||| +...++.+||+|||++|+|++|+||+|++..++.......++ ++||+|+||+.
T Consensus 236 ~~~Y~TIHVTPE~~~SYaSFETN---~~~~~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~~~~~~~~gy~~~d~~~ 312 (334)
T 1jl0_A 236 DGTYWTIAITPEPEFSYVSFETN---LSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQS 312 (334)
T ss_dssp TSCEEEEEEECCTTSCEEEEEEC---CCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEEEEEEEE
T ss_pred CCeEEEEEecCCCCCeeEEEEcC---cccccHHHHHHHHHheeCCCeEEEEEEcCCccccchhhhcccCCCCcEeccceE
Confidence 5999999999999999999996 455678999999999999999999999998776554445566 89999999999
Q ss_pred eeCCCCceEEEEEEEecCC
Q 039582 319 EELGNNGSLIYYSFSRADC 337 (361)
Q Consensus 319 ~~l~~gy~l~y~~f~r~~~ 337 (361)
++|+ ||+|+|++|+|.+.
T Consensus 313 ~~~~-~y~l~y~~f~r~~~ 330 (334)
T 1jl0_A 313 AMFN-DYNFVFTSFAKKQQ 330 (334)
T ss_dssp EECS-SEEEEEEEEEECC-
T ss_pred EecC-CeEEEEEEEEEccc
Confidence 9999 79999999999864
No 2
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=100.00 E-value=2.4e-112 Score=816.80 Aligned_cols=288 Identities=67% Similarity=1.107 Sum_probs=238.3
Q ss_pred ceeEEeCCEEEEeccCchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcc
Q 039582 71 SSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDST 150 (361)
Q Consensus 71 SSLFV~~~kiILKTCGTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~ 150 (361)
|||||||+|||||||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|++|+.+|+
T Consensus 1 SSLFV~~~kiIlKTCGTT~LL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~ 80 (288)
T 1mhm_A 1 XSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSK 80 (288)
T ss_dssp -CEEEETTEEEEEEETTSCGGGGHHHHHHHHHHTTCCEEEEEEEECC-----------CCHHHHHHHHHHHHTTSTTCEE
T ss_pred CCccccCCEEEEEeCCCccHHHHHHHHHHHHHHcCCceEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHhcccCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred eEEecCCCCCCcEEEEecCCCCCCCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCC
Q 039582 151 AFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDP 230 (361)
Q Consensus 151 aY~~G~~~~~~~W~ly~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~P 230 (361)
||+||++|++||||||+++.......++|+|||||||+||+++|++||++++++|.+||+.+||++|+|+++||||+|+|
T Consensus 81 aY~~G~~~~~~~W~lY~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~sa~~~t~~sGi~~i~P~~~iddf~F~P 160 (288)
T 1mhm_A 81 AVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEP 160 (288)
T ss_dssp EEEESSSCSSCCEEEEEEESCCCCCSSCCCEEEEEEEEECHHHHHTTSCCSSCCHHHHHHHHTGGGTSTTSEEEEEECSS
T ss_pred eEEeCCCCCCCceEEEeCCCCcccCCCCcceEEEeecCCCHHHHHhhhccccccHHHHHHHhChhhcCCCcEeeccccCC
Confidence 99999999999999999986543445789999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCCCCC
Q 039582 231 CGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKG 310 (361)
Q Consensus 231 CGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~~~g 310 (361)
||||||||.|++|+|||||||++|||||||||++|.+..++.+||+|||++|+|++|+||+|+|..++.......++++|
T Consensus 161 CGYSmNgi~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~Vl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~g 240 (288)
T 1mhm_A 161 CGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKG 240 (288)
T ss_dssp SCEEEEEEETTEEEEEEEECCTTSCEEEEEEESCCTTTSCHHHHHHHHHHHHCEEEEEEEEEESSCHHHHHHHHCCCCTT
T ss_pred ccceeccccCCceEEEEeCCCCCCeeEEEEecCCCcccccHHHHHHHHHheeCCCEEEEEEEecccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999988887899999999999999999999999997554333333457899
Q ss_pred ceecceEEeeCCCCceEEEEEEEecCCCCCCccccccccccccchhhh
Q 039582 311 YSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEV 358 (361)
Q Consensus 311 y~~~~~~~~~l~~gy~l~y~~f~r~~~~~sp~s~l~~~w~~~~~~~~~ 358 (361)
|+|.|++.++|++||+|+|++|+|...+|||||+|||||+++++|++|
T Consensus 241 y~~~~~~~~~l~~gy~l~y~~f~~~~~~~~p~~~~~~~~~~~~~~~~~ 288 (288)
T 1mhm_A 241 YSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCWKEEEKEGKE 288 (288)
T ss_dssp EEEEEEEEEECGGGCEEEEEEEEEC-----------------------
T ss_pred CeEcccEEEECCCCcEEEEEEEeccCCCCCCcchhhhhhcccccccCC
Confidence 999999999999899999999999989999999999999988877764
No 3
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=99.96 E-value=5.2e-31 Score=205.94 Aligned_cols=70 Identities=80% Similarity=1.253 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccC
Q 039582 1 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSE 70 (361)
Q Consensus 1 ~~~~~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 70 (361)
|++++++++|||+||||||||+++..+.++.+.|||+|||++|++||+.|+|+|||+++|+++|||||||
T Consensus 3 ~~~~~s~~~FEG~EK~LEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 72 (72)
T 1mhm_B 3 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE 72 (72)
T ss_dssp ------------CEEEEEEEECCCCCC----CCCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC
T ss_pred cccCCCCCCcccceEEEEEEEecCCccCCCCcCccccCCHHHHHHHHhhcCCEEEEEecCCcceeEEecC
Confidence 8899999999999999999999776555678899999999999999999999999999999999999998
No 4
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=94.99 E-value=0.026 Score=49.00 Aligned_cols=102 Identities=23% Similarity=0.227 Sum_probs=72.6
Q ss_pred EEEEecCCCHhhhcccccCCc---chHHHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEE
Q 039582 182 LEMCMTGLDRKRASVFYKTNE---SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYAS 258 (361)
Q Consensus 182 lEilMt~Ld~~~a~~F~~~~~---~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaS 258 (361)
+=+=+|+-+++... +.. ..-.+..+..|..-+ .+.-+.|+|=|+|.=+|..+..-+||.=||.+ ||+
T Consensus 20 li~DlygC~~~~L~----D~e~l~~~l~eAa~~~gatvl----~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g--yAa 89 (142)
T 1vr7_A 20 LVAEFYECDREVLD----NVQLIEQEMKQAAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAA 89 (142)
T ss_dssp EEEEEESCCHHHHT----CHHHHHHHHHHHHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEE
T ss_pred EEEEEcCCChHHCC----CHHHHHHHHHHHHHHcCCEEe----EEEEEEcCCCCeEEEEEecccEEEEEeCCCCC--eEE
Confidence 44456777777633 322 233455556665433 34568899999999999999999999999999 566
Q ss_pred EeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeec
Q 039582 259 FEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 294 (361)
Q Consensus 259 FETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~ 294 (361)
...=-+. ...++...++-+.+.|+|.+..++....
T Consensus 90 vDVftCg-~~~~P~~a~~~L~~~f~a~~~~~~~~~R 124 (142)
T 1vr7_A 90 IDLFTCG-EDVDPWKAFEHLKKALKAKRVHVVEHER 124 (142)
T ss_dssp EEEEEES-TTCCHHHHHHHHHHHHTCSEEEEEEEEE
T ss_pred EEEEccC-CCCCHHHHHHHHHHHhCCCeEEEEEEeC
Confidence 6652111 2247889999999999999999985543
No 5
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=94.42 E-value=0.028 Score=48.39 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=60.5
Q ss_pred HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582 206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA 285 (361)
Q Consensus 206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~ 285 (361)
.+..+..|..-+- +.-+.|+|=|+|.=+|..+..-+||.=||.+ ||+...=-+. ...++...++-+.+.|+|.
T Consensus 32 ~~aa~~~gatvl~----~~~h~F~P~GvSgvvllaESHisIHTwPE~g--yaavDvftCg-~~~~P~~a~~~l~~~f~a~ 104 (135)
T 2iii_A 32 EGAVKYANLTKIS----SHYYQFQPHGATGVVLLAESHISIHTWPEHG--LATVDVYTCG-DPSKAYRAMDYIITQLNPK 104 (135)
T ss_dssp HHHHHHTTCCEEE----EEEEECSSSCEEEEEEEC-CEEEEEEEGGGT--EEEEEEEEES-CHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHcCCEEEE----EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--cEEEEEEccC-CCCCHHHHHHHHHHHhCCC
Confidence 4555555554432 4568899999999999999999999999999 5665541111 1236888999999999999
Q ss_pred eEEEEEeec
Q 039582 286 EFSVALHSD 294 (361)
Q Consensus 286 ~f~vtl~~~ 294 (361)
+..++....
T Consensus 105 ~~~~~~~~R 113 (135)
T 2iii_A 105 RIDKQVHER 113 (135)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEeC
Confidence 999985543
No 6
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=21.90 E-value=11 Score=36.00 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=51.8
Q ss_pred ccccCHHHHHHHhcccCCeEEeeeccCcceeeecc---------------------CceeEEeCCEEEEeccCchhhhch
Q 039582 35 LRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS---------------------ESSLFVYPYKVIIKTCGTTKLLLS 93 (361)
Q Consensus 35 LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLS---------------------ESSLFV~~~kiILKTCGTT~LL~~ 93 (361)
.++|+.++|+.+.+.+.-.+-..+....++.|+=. ..+|.||.++ =+-|||
T Consensus 191 ~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~--g~PCG~------ 262 (295)
T 3vk8_A 191 GSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKK--KDPNGN------ 262 (295)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCSCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCS--BCTTSC------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhCCCcceecCCCCcccccccccccccccccccceEEEeCCC--CCCCCC------
Confidence 56899999999999877666555555556666432 5678888763 234644
Q ss_pred HHHHHHHHhhcCceeeEEEE------ccccccCCCCCCCCCC
Q 039582 94 IPAILKLSESLSLSVRSVRY------TRGSFIFAGAQPFPHR 129 (361)
Q Consensus 94 l~~ll~la~~~~~~v~~v~Y------sRknf~fP~~Q~~pH~ 129 (361)
.|....+ .|..|+.|..|+..|.
T Consensus 263 -------------~I~~~~~~~~~~~~R~t~~CP~CQ~~~~~ 291 (295)
T 3vk8_A 263 -------------KVIADKIIGSGKNKRTTYWAPAIQKLEHH 291 (295)
T ss_dssp -------------BCEEEECSCCTTCCCEEEECTTTCBCC--
T ss_pred -------------cEEEEEecCCCCCCCccEECCCCCCCccc
Confidence 3566666 7999999999998874
No 7
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=21.35 E-value=3.3e+02 Score=22.77 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=54.0
Q ss_pred HHHHHHHhcccCCeEEeeecc----Ccce-eeeccCce--eEEeCCE----EEEeccCc-hhhhchHHHHHHHHhhcCc-
Q 039582 40 KHQLDEILKPAECTIVSSLSN----EHLD-SYVLSESS--LFVYPYK----VIIKTCGT-TKLLLSIPAILKLSESLSL- 106 (361)
Q Consensus 40 ~~~w~~~L~~a~C~IlS~~sn----~~~D-AYvLSESS--LFV~~~k----iILKTCGT-T~LL~~l~~ll~la~~~~~- 106 (361)
+....+..+.++.+||+...- .++- .-||+||= +=.||.. |=+=|||. +....++..| .+.++-
T Consensus 28 ~~~l~~aa~~~gatvl~~~~h~F~P~GvSgvvllaESHisIHTwPE~gyaavDvftCg~~~~P~~a~~~l---~~~f~a~ 104 (135)
T 2iii_A 28 RELLEGAVKYANLTKISSHYYQFQPHGATGVVLLAESHISIHTWPEHGLATVDVYTCGDPSKAYRAMDYI---ITQLNPK 104 (135)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSSSCEEEEEEEC-CEEEEEEEGGGTEEEEEEEEESCHHHHHHHHHHH---HHHHCCS
T ss_pred HHHHHHHHHHcCCEEEEEEEEEcCCCCeEEEEEecccEEEEEeCCCCCcEEEEEEccCCCCCHHHHHHHH---HHHhCCC
Confidence 566788889999999997642 1222 24889994 4558764 66889999 4888888888 455543
Q ss_pred eeeEEEEccccccCCCCC
Q 039582 107 SVRSVRYTRGSFIFAGAQ 124 (361)
Q Consensus 107 ~v~~v~YsRknf~fP~~Q 124 (361)
++..-...|+.+--+..|
T Consensus 105 ~~~~~~~~RG~~~~~~~~ 122 (135)
T 2iii_A 105 RIDKQVHERGIVEEESNQ 122 (135)
T ss_dssp EEEEEEEEEEEECSSCCC
T ss_pred eEEEEEEeCCCccccccc
Confidence 355555566655444433
No 8
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=14.52 E-value=57 Score=20.12 Aligned_cols=8 Identities=50% Similarity=0.829 Sum_probs=6.1
Q ss_pred CceeEEeC
Q 039582 70 ESSLFVYP 77 (361)
Q Consensus 70 ESSLFV~~ 77 (361)
.||||+|-
T Consensus 9 rsslflwv 16 (26)
T 2bp3_S 9 RSSLFLWV 16 (26)
T ss_pred hheEEEEE
Confidence 58888884
No 9
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=13.53 E-value=1.3e+02 Score=24.18 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=29.9
Q ss_pred ccccCHHHHHHHhcccCCeEEeeeccCcceeeeccC
Q 039582 35 LRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSE 70 (361)
Q Consensus 35 LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 70 (361)
|..++|++|.+++...+.+|.+.++. ..|-.|..|
T Consensus 44 l~~~~R~e~~~~i~~~Gg~v~~sVSk-kTd~LV~G~ 78 (109)
T 2k6g_A 44 LESIERDEAKSLIERYGGKVTGNVSK-KTNYLVMGR 78 (109)
T ss_dssp CSSCCHHHHHHHHHHTTCEEESSCCT-TCCEEEECB
T ss_pred CCCCCHHHHHHHHHHcCCEeeCcccC-CceEEEECC
Confidence 66889999999999999999998875 667777666
No 10
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=12.18 E-value=1.4e+02 Score=25.16 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=26.4
Q ss_pred ccccCHHHHHHHhcccCCeEEeeeccCcceee
Q 039582 35 LRSLSKHQLDEILKPAECTIVSSLSNEHLDSY 66 (361)
Q Consensus 35 LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAY 66 (361)
+|..+.++|.++|+.||-+++....+-....+
T Consensus 198 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 229 (243)
T 3d2l_A 198 QRTYPPEQYITWLREAGFRVCAVTGDFKSDAP 229 (243)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEEETTSSSCC
T ss_pred EecCCHHHHHHHHHHCCCeEEEEecCcccCCC
Confidence 46789999999999999999999876554444
Done!