BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039585
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 140/268 (52%), Gaps = 4/268 (1%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L+ +Y T+CP E +V++ V + A G +R+ HDCFV GCD SVL+ S A N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 162 VAERDS-DINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNV 220
AE+D+ N SL G F+V+ K+A+E ACP VSCADIL + R+ +AG + V
Sbjct: 62 TAEKDAIPNNPSLRG--FEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119
Query: 221 SFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEF 280
GR+DG VS A+ +P+ +++ FA+K + E V L GAH+IG AHC F
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNIT-MTAFNDVMSPGKFDNSYFXXXX 339
++RL+ F DP L+P YA L+ C + T +T D+++P DN Y+
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 340 XXXXXXXVDNMLVKDPRTKPLVDQYASN 367
D LV + V A N
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMN 267
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 139/269 (51%), Gaps = 4/269 (1%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L A +Y TCP+ IVR + Q A +R+ HDCFV+GCD S+L+
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
+E+++ N++ F+VV IK ALE+ACPGVVSC+D+L ++ V +AGGP + V
Sbjct: 63 QSEKNAGPNVN-SARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEFS 281
GR+D L + A ++P+ ++ I F++ G + + VAL GAHT G A C F+
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 282 DRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXXX 341
+RLF F+ DP LN L+ C + T+T D+ +P FDN+YF
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNL-DLSTPDAFDNNYFANLQSN 240
Query: 342 XXXXXVDNML--VKDPRTKPLVDQYASNE 368
D L T +V +ASN+
Sbjct: 241 DGLLQSDQELFSTTGSSTIAIVTSFASNQ 269
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 144/277 (51%), Gaps = 13/277 (4%)
Query: 96 PSAKPALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLI 155
P P L D+Y TCP E IVREFV + + AAG LR+ HDCFV GCD SVL+
Sbjct: 3 PPVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLL 62
Query: 156 SSNAFNVAERDSDINLSLPGDAFDVVIKIKNALEDACPG-VVSCADILTASTRNLVVMAG 214
+A E+ + NL+L AF V I++ LE C G VVSC+DIL + R+ VV++G
Sbjct: 63 DGSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSG 122
Query: 215 GPRFNVSFGRKDGL-VSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GP + V GR+D + + +LP + + +L + G + V + G HTIG
Sbjct: 123 GPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIG 182
Query: 274 FAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAAC--KNHEQNITMTAFNDVMSPGKFD 331
AHC F DRLF +P DP ++P + LK C K ++ + DV +P FD
Sbjct: 183 LAHCSSFEDRLFP----RP-DPTISPTFLSRLKRTCPAKGTDRRTVL----DVRTPNVFD 233
Query: 332 NSYFXXXXXXXXXXXVDNMLVKDPRTKPLVDQYASNE 368
N Y+ D L + T+P+V+++A ++
Sbjct: 234 NKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQ 270
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 137/270 (50%), Gaps = 6/270 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y+ TCP+ IV + P A +R+ HDCFV GCDGSVL+++
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 162 VAERDSDINL-SLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNV 220
+E+D+ N+ S+ G DVV IK A+E++CP VSCADIL + V+ GGP + V
Sbjct: 62 ESEQDALPNINSIRG--LDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV 119
Query: 221 SFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP + ++ FA +G + + V L G HT G A C F
Sbjct: 120 PLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
+RL+ F+ DP LN Y E L+A C + +T D+ +P +FDN Y+
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNL-DLSTPDQFDNRYYSNLLQ 238
Query: 341 XXXXXXVDNMLVKDP--RTKPLVDQYASNE 368
D L P T P+V+ ++SN+
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQ 268
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 139/267 (52%), Gaps = 11/267 (4%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +++Y T CP+ ++ V+ + A LR+ HDCFV GCD SVL+ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 162 VAERDSDINL-SLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNV 220
E+ + N S+ G F+V+ IK+ +E CPGVVSCADIL + R+ VV GG +NV
Sbjct: 62 TGEKTAGPNANSIRG--FEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 221 SFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEF 280
GR+D + + +LP + ++ F++KGF+ +E V L GAHTIG A C F
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAF 179
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
R++ + ++P YA++L+A C + + ++ F DV +P KFDN+Y+
Sbjct: 180 RTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPF-DVTTPNKFDNAYYINLRN 231
Query: 341 XXXXXXVDNMLVKDPRTKPLVDQYASN 367
D L T V Y++N
Sbjct: 232 KKGLLHSDQQLFNGVSTDSQVTAYSNN 258
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 138/270 (51%), Gaps = 4/270 (1%)
Query: 101 ALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAF 160
+L A +Y TCP+ +VR V Q A +R+ HDCFV GCD S+L+ ++
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 161 NVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNV 220
++E+++ N + F+VV IK ALE+ACPGVVSC D+L +++ V ++GGP + V
Sbjct: 63 IISEKNAGPNAN-SARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 221 SFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEF 280
GR+D L + A ++P+ + I F++ G + + VAL GAHT G A C F
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVF 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
S+RLF F+ DP LN L+ C + T D+ +P FDN+YF
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL-DLSTPDAFDNNYFTNLQS 240
Query: 341 XXXXXXVDNML--VKDPRTKPLVDQYASNE 368
D L T +V +ASN+
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQ 270
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 141/275 (51%), Gaps = 18/275 (6%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L D Y +CP+ +IVR+ V AA +R+ HDCFV+GCD S+L+
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDG---- 57
Query: 162 VAERDSDINLSLP----GDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPR 217
DS+ L++P F+V+ IK A+E+ACPGVVSCADILT + R+ VV++GGP
Sbjct: 58 ---ADSE-KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPG 113
Query: 218 FNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHC 277
+ V+ GRKDGLV+ NLP+ +D I+ F + +I + VAL GAHT G A C
Sbjct: 114 WRVALGRKDGLVANQNS-ANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKC 172
Query: 278 KEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXX 337
FS+RLF F D L L+ C N +TA D + FDN+YF
Sbjct: 173 AVFSNRLFNFTGAGNPDATLETSLLSNLQTVCP-LGGNSNITAPLDRSTTDTFDNNYFKN 231
Query: 338 XXXXXXXXXVDNMLVKDP----RTKPLVDQYASNE 368
D +L TK LV+ Y+ ++
Sbjct: 232 LLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQ 266
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 63 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 240
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFAN 269
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 62 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 239
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFAN 268
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 63 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 240
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFAN 269
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 63 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 240
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFAN 269
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 62 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 239
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFAN 268
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 62 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 239
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFAN 268
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 62 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 239
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFAN 268
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 63 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C N++ D+ +P FDN Y+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-LNGNLSALVDMDLRTPTIFDNKYYVNLEE 240
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFAN 269
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 63 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 240
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFAN 269
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ HDCFV+GCD S+L+ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 62 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G H+ G C+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 239
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFAN 268
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 132/269 (49%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA LR+ DCFV+GCD S+L+ +
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 63 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 240
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFAN 269
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 131/269 (48%), Gaps = 6/269 (2%)
Query: 102 LRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFN 161
L +Y +CP+ IVR+ + + P AA L + DCFV+GCD S+L+ +
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 162 VAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVS 221
E+D+ N + F V+ ++K A+E ACP VSCAD+LT + + V +AGGP + V
Sbjct: 62 RTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 222 FGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS-IQEYVALMGAHTIGFAHCKEF 280
GR+D L + NLP T+ ++ F + G + + VAL G HT G C+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 281 SDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXX 340
DRL+ F+ DP LN Y + L+ C + + F D+ +P FDN Y+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF-DLRTPTIFDNKYYVNLEE 239
Query: 341 XXXXXXVDNMLVKDPR---TKPLVDQYAS 366
D L P T PLV +A+
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFAN 268
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 100 PALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
P + ADY K +K +R F+ +K+ A LR+ H G +
Sbjct: 17 PTVSADYQKA-VEKAKKKLRGFIAEKRC-----APLMLRLAWHSA---GTFDKGTKTGGP 67
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ S + D+ +++ L+ P ++S AD + V + GGP
Sbjct: 68 FGTIKHPAELAHSA-NNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 125
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G + Q+ VAL G HTIG AH
Sbjct: 126 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-- 180
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
K A + + +P FDNSYF
Sbjct: 181 ---------------------KEASGFEGPWTS--------------NPLIFDNSYFTEL 205
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ DP +PLVD+YA++E
Sbjct: 206 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE 239
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 100 PALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
P + ADY K +K +R F+ +K+ A LR+ H G +
Sbjct: 17 PTVSADYQKA-VEKAKKKLRGFIAEKRC-----APLMLRLAWHSA---GTFDKGTKTGGP 67
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ S + D+ +++ L+ P ++S AD + V + GGP
Sbjct: 68 FGTIKHPAELAHSA-NNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 125
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G + Q+ VAL G HTIG AH K
Sbjct: 126 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-K 181
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
E S + N P FDNSYF
Sbjct: 182 ERSGFEGPWTSN------------------------------------PLIFDNSYFTEL 205
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ DP +PLVD+YA++E
Sbjct: 206 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE 239
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 100 PALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
P + ADY K +K +R F+ +K+ A LR+ H G +
Sbjct: 5 PTVSADYQKA-VEKAKKKLRGFIAEKRC-----APLMLRLAWHSA---GTFDKGTKTGGP 55
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ S + D+ +++ L+ P ++S AD + V + GGP
Sbjct: 56 FGTIKHPAELAHSA-NNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 113
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G + Q+ VAL G HTIG AH K
Sbjct: 114 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-K 169
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
E S + N P FDNSYF
Sbjct: 170 ERSGFEGPWTSN------------------------------------PLIFDNSYFTEL 193
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ DP +PLVD+YA++E
Sbjct: 194 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE 227
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 100 PALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
P + ADY K +K +R F+ +K+ A LR+ H G +
Sbjct: 17 PTVSADYQKA-VEKAKKKLRGFIAEKRC-----APLMLRLAWHSA---GTFDKGTKTGGP 67
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ S + D+ +++ L+ P ++S AD + V + GGP
Sbjct: 68 FGTIKHPAELAHSA-NNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 125
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G + Q+ VAL G HTIG AH K
Sbjct: 126 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-K 181
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
E S + N P FDNSYF
Sbjct: 182 ERSGFEGPWTSN------------------------------------PLIFDNSYFTEL 205
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ DP +PLVD+YA++E
Sbjct: 206 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE 239
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 177 AFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIP 236
D+ K L+ P +S AD+ + + GGP +GR D
Sbjct: 68 GLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 126
Query: 237 GNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEFS 281
G LP + T + ++F GF+ QE VAL+GAHT G H EFS
Sbjct: 127 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHI-EFS 170
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 102/274 (37%), Gaps = 62/274 (22%)
Query: 107 YKTTCPDFEKIV-------REFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
Y T PD++K + R F+ +K+ A LR+ H G S +
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKC-----APLILRLAWHSA---GTFDSKTKTGGP 55
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ + D+ +++ +++ P +VS AD + V + GGP
Sbjct: 56 FGTIKHQAELAHGA-NNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVP 113
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G S Q+ VAL G HTIG AH K
Sbjct: 114 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAH-K 169
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
E S + N P FDNSYF
Sbjct: 170 ERSGFEGPWTSN------------------------------------PLIFDNSYFTEL 193
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ D +PLV++YA++E
Sbjct: 194 LTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADE 227
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 177 AFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIP 236
D+ K L+ P +S AD+ + + GGP +GR D
Sbjct: 67 GLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 125
Query: 237 GNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEFS 281
G LP + T + ++F GF+ QE VAL+GAHT G H EFS
Sbjct: 126 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHI-EFS 169
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 177 AFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIP 236
D+ K L+ P +S AD+ + + GGP +GR D
Sbjct: 68 GLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 126
Query: 237 GNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAHCKEFS 281
G LP + T + ++F GF+ QE VAL+GAHT G H EFS
Sbjct: 127 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHI-EFS 170
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 100 PALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
P + ADY K +K +R F+ +K+ A LR+ H G +
Sbjct: 17 PTVSADYQKA-VEKAKKKLRGFIAEKRC-----APLMLRLAAHSA---GTFDKGTKTGGP 67
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ S + D+ +++ L+ P ++S AD + V + GGP
Sbjct: 68 FGTIKHPAELAHSA-NNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 125
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G + Q+ VAL G HTIG AH K
Sbjct: 126 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-K 181
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
E S + N P FDNSYF
Sbjct: 182 ERSGFEGPWTSN------------------------------------PLIFDNSYFTEL 205
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ DP +PLVD+YA++E
Sbjct: 206 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE 239
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 100 PALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNA 159
P + ADY K +K +R F+ +K+ A L++ H G +
Sbjct: 5 PTVSADYQKA-VEKAKKKLRGFIAEKRC-----APLMLKLAWHSA---GTFDKGTKTGGP 55
Query: 160 FNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFN 219
F + +++ S + D+ +++ L+ P ++S AD + V + GGP
Sbjct: 56 FGTIKHPAELAHSA-NNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 113
Query: 220 VSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCK 278
GR+D G LP D + +F + G + Q+ VAL G HTIG AH K
Sbjct: 114 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-K 169
Query: 279 EFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXX 338
E S + N P FDNSYF
Sbjct: 170 ERSGFEGPWTSN------------------------------------PLIFDNSYFTEL 193
Query: 339 XXXXXXXXV----DNMLVKDPRTKPLVDQYASNE 368
+ D L+ DP +PLVD+YA++E
Sbjct: 194 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE 227
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 46/198 (23%)
Query: 176 DAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARI 235
+ D+ +++ L+ P ++S AD + V + GGP GR+D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 126
Query: 236 PGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTD 294
G LP D + +F + G + Q+ VAL G HTIG AH KE S + N
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-KERSGFEGPWTSN---- 181
Query: 295 PELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXV----DNM 350
P FDNSYF + D
Sbjct: 182 --------------------------------PLIFDNSYFTELLSGEKEGLLQLPSDKA 209
Query: 351 LVKDPRTKPLVDQYASNE 368
L+ DP +PLVD+YA++E
Sbjct: 210 LLSDPVFRPLVDKYAADE 227
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 46/198 (23%)
Query: 176 DAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARI 235
+ D+ +++ L+ P ++S AD + V + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 236 PGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTD 294
G LP D + +F + G + Q+ VAL G HTIG AH KE S + N
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-KERSGFEGPWTSN---- 193
Query: 295 PELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXV----DNM 350
P FDNSYF + D
Sbjct: 194 --------------------------------PLIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 351 LVKDPRTKPLVDQYASNE 368
L+ DP +PLVD+YA++E
Sbjct: 222 LLSDPVFRPLVDKYAADE 239
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 46/198 (23%)
Query: 176 DAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARI 235
+ D+ +++ L+ P ++S AD + V + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 236 PGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTD 294
G LP D + +F + G + Q+ VAL G HTIG AH KE S + N
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-KERSGFEGPWTSN---- 193
Query: 295 PELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXV----DNM 350
P FDNSYF + D
Sbjct: 194 --------------------------------PLIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 351 LVKDPRTKPLVDQYASNE 368
L+ DP +PLVD+YA++E
Sbjct: 222 LLSDPVFRPLVDKYAADE 239
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 46/198 (23%)
Query: 176 DAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARI 235
+ D+ +++ L+ P ++S AD + V + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 236 PGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTD 294
G LP D + +F + G + Q+ VAL G HTIG AH KE S + N
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-KERSGFEGPWTSN---- 193
Query: 295 PELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXV----DNM 350
P FDNSYF + D
Sbjct: 194 --------------------------------PLIFDNSYFTELLSGEKEGLLQLPSDKA 221
Query: 351 LVKDPRTKPLVDQYASNE 368
L+ DP +PLVD+YA++E
Sbjct: 222 LLSDPVFRPLVDKYAADE 239
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 46/198 (23%)
Query: 176 DAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARI 235
+ D+ +++ L+ P ++S AD + V + GGP GR+D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 126
Query: 236 PGNLPTNNMTMDEILKMFA-SKGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTD 294
G LP D + +F + G + Q+ VAL G HTIG AH KE S + N
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-KERSGFEGPWTSN---- 181
Query: 295 PELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXV----DNM 350
P FDNSYF + D
Sbjct: 182 --------------------------------PLIFDNSYFTELLSGEKEGLLQLPSDKA 209
Query: 351 LVKDPRTKPLVDQYASNE 368
L+ DP +PLVD+YA++E
Sbjct: 210 LLSDPVFRPLVDKYAADE 227
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIP--GNLPTNN--MTMDEILK 251
V+ AD+ ++ + AGGP+ + +GR D V++ + P G LP +
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVD--VTEPEQCPEEGRLPDAGPPSPAQHLRD 144
Query: 252 MFASKGFSIQEYVALMGAHTIGFAHCKE--FSDRLFKFAPNQPTDPELNPKYAEALKAAC 309
+F G + +E VAL GAHT+G + + K+ + P P A+ L
Sbjct: 145 VFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWL---- 200
Query: 310 KNHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXV----DNMLVKDPRTKPLVDQYA 365
KFDNSYF + D L +DP K ++YA
Sbjct: 201 -------------------KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYA 241
Query: 366 SN 367
++
Sbjct: 242 AD 243
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAHT+G H K
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK 183
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAHT+G H K
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK 183
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAHT+G H K
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK 183
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAHT+G H K
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK 183
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 160 LNMNDREVVALMGAHALGKTHLK 182
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 160 LNMNDREVVALMGAHALGKTHLK 182
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 153
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 154 LNMNDREVVALMGAHALGKTHLK 176
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + D + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VAL GAHT+G H K
Sbjct: 161 LNMNDREVVALSGAHTLGKTHLK 183
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 213 AGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTI 272
AGGPR GR + +SQ + G +P + D+IL A GFS E V L+ +H+I
Sbjct: 122 AGGPRLQFLAGRSN--ISQPSP-DGLVPDPTDSADKILARMADIGFSPTEVVHLLASHSI 178
>pdb|1QGE|E Chain E, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 97
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 190 DACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNM---TM 246
D G + A++ ST L+ G N + G+ DGLVS+ + + G + + + +
Sbjct: 6 DTSTGTLDVANVTDPSTLALLA-TGAVMINRASGQNDGLVSRCSSLFGQVISTSYHWNHL 64
Query: 247 DEILKMFASKGFSIQEYVALMGAH 270
DEI ++ +G + ++ VA++ H
Sbjct: 65 DEINQLLGVRGANAEDPVAVIRTH 88
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 31/179 (17%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACK----- 310
+ +E VALMGAH +G H K + ++ + N KY L K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK---NSGYEGPWGAANNVFTNEKYLNLLNEDWKLEKND 214
Query: 311 -NHEQNITMTAFNDVMSPGKFDNSYFXXXXXXXXXXXVDNMLVKDPRTKPLVDQYASNE 368
N+EQ + + + +M P D L++DP+ +V +YA+++
Sbjct: 215 ANNEQWDSKSGY--MMLP-------------------TDYSLIQDPKYLSIVKEYANDQ 252
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK 186
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDYDKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK 186
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 159 LNMNDREVVALMGAHALGKTHLK 181
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK 186
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK 185
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK 186
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK 180
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 159 LNMNDREVVALMGAHALGKTHLK 181
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDMDKDAGYVRTFFQR 160
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G H K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEGFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDN- 332
A D++ P P D P+ ++ Q T + PG DN
Sbjct: 173 AA------DKVDPSIPGTPFDS--TPEVFDS---------QFFIETQLKGRLFPGTADNK 215
Query: 333 SYFXXXXXXXXXXXVDNMLVKDPRT 357
D++L +DP+T
Sbjct: 216 GEAQSPLQGEIRLQSDHLLARDPQT 240
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V+L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 181 VIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLP 240
V+ + A D G + A++ ST L+ G N + G+ DGLVS+ + + G +
Sbjct: 220 VLGVTGA-TDTSTGTLDVANVTDPSTLALLAT-GAVMINRASGQNDGLVSRCSSLFGQVI 277
Query: 241 TNNM---TMDEILKMFASKGFSIQEYVALMGAH 270
+ + +DEI ++ +G + ++ VA++ H
Sbjct: 278 STSYHWNHLDEINQLLGVRGANAEDPVAVIRTH 310
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 181 VIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLP 240
V+ + A D G + A++ ST L+ G N + G+ DGLVS+ + + G +
Sbjct: 219 VLGVTGA-TDTSTGTLDVANVTDPSTLALLAT-GAVMINRASGQNDGLVSRCSSLFGQVI 276
Query: 241 TNNM---TMDEILKMFASKGFSIQEYVALMGAH 270
+ + +DEI ++ +G + ++ VA++ H
Sbjct: 277 STSYHWNHLDEINQLLGVRGANAEDPVAVIRTH 309
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDN- 332
A D++ P P D P+ ++ Q T + PG DN
Sbjct: 173 AA------DKVDPSIPGTPFD--STPQVFDS---------QFFIETQLKGRLFPGTADNK 215
Query: 333 SYFXXXXXXXXXXXVDNMLVKDPRT 357
D++L +DP+T
Sbjct: 216 GEAQSPLQGEIRLQSDHLLARDPQT 240
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 25/147 (17%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FAHCKEFSDRLFKFAPNQPTD--PELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFD 331
A D++ P P D PE+ Q T + PG D
Sbjct: 173 AA------DKVDPSIPGTPFDSTPEV-------------FDSQFFIETQLKGRLFPGTAD 213
Query: 332 N-SYFXXXXXXXXXXXVDNMLVKDPRT 357
N D++L +DP+T
Sbjct: 214 NKGEAQSPLQGEIRLQSDHLLARDPQT 240
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 21/156 (13%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDN- 332
A D++ P P D P ++ Q T + PG DN
Sbjct: 173 AA------DKVDPSIPGTPFDS--TPGVFDS---------QFFIETQLKGRLFPGTADNK 215
Query: 333 SYFXXXXXXXXXXXVDNMLVKDPRTKPLVDQYASNE 368
D++L +DP+T + +N+
Sbjct: 216 GEAQSPLQGEIRLQSDHLLARDPQTACEWQSFVNNQ 251
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VAL GAH +G H K
Sbjct: 158 LNMNDREVVALKGAHALGKTHLK 180
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEIL-KMFASKGFSIQEYVALMGAHTI 272
G P+ GR + +QAA G +P T+D++L +M + GF E V L+ AH+I
Sbjct: 123 GAPQMQFFLGRPE--ATQAAPD-GLVPEPFHTIDQVLARMLDAGGFDEIETVXLLSAHSI 179
Query: 273 GFAH 276
A+
Sbjct: 180 AAAN 183
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDN- 332
A D++ P P D P+ ++ Q T + PG DN
Sbjct: 173 AA------DKVDPSIPGTPFDS--TPEVFDS---------QFFIETQLKGRLFPGTADNK 215
Query: 333 SYFXXXXXXXXXXXVDNMLVKDPRT 357
D++L +DP+T
Sbjct: 216 GEAQSPLQGEIRLQSDHLLARDPQT 240
>pdb|1XC3|A Chain A, Structure Of A Putative Fructokinase From Bacillus
Subtilis
Length = 302
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 211 VMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQ 261
+ AGG +F + GR+DG + P +P + T++++++ F+ FS+Q
Sbjct: 8 IEAGGTKFVCAVGREDGTIIDRIEFPTKMP--DETIEKVIQYFSQ--FSLQ 54
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDN- 332
A D++ P P D P+ ++ Q T + PG DN
Sbjct: 173 AA------DKVDPSIPGTPFDS--TPEVFDS---------QFFIETQLKGRLFPGTADNK 215
Query: 333 SYFXXXXXXXXXXXVDNMLVKDPRT 357
D++L +DP+T
Sbjct: 216 GEAQSPLQGEIRLQSDHLLARDPQT 240
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|1CUO|A Chain A, Crystal Structure Analysis Of Isomer-2 Azurin From
Methylomonas J
pdb|1UAT|A Chain A, The Significance Of The Flexible Loop In The Azurin
(Az-Iso2) From The Obligate Methylotroph Methylomonas
Sp. Strain J
Length = 129
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 191 ACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEIL 250
+C V+ D +T STR++ V A F V+F K G++P M + +L
Sbjct: 2 SCETTVTSGDTMTYSTRSISVPASCAEFTVNFEHK-----------GHMPKTGMGHNWVL 50
Query: 251 KMFASKGFSIQEYVALMGAH 270
A G VA GAH
Sbjct: 51 AKSADVG-----DVAKEGAH 65
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 214 GGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIG 273
GG R GR D + + + +P ++D IL GFS E V L+ +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIA 172
Query: 274 FA 275
A
Sbjct: 173 AA 174
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGAH +G K
Sbjct: 158 LNMNDREVVALMGAHALGKTELK 180
>pdb|3LM9|A Chain A, Crystal Structure Of Fructokinase With Adp And Fructose
Bound In The Active Site
Length = 302
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 211 VMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQ 261
+ AGG +F + GR+DG + P P + T++++++ F+ FS+Q
Sbjct: 8 IEAGGTKFVCAVGREDGTIIDRIEFPTKXP--DETIEKVIQYFSQ--FSLQ 54
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 214 GGPRFNVSFGRKDGLVSQAAR-IPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTI 272
G PR GR + IPG P N +T IL F GFS E V L+ AH++
Sbjct: 130 GSPRLEFLTGRSNSSQPSPPSLIPG--PGNTVTA--ILDRFGDAGFSPDEVVDLLAAHSL 185
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGA +G H K
Sbjct: 158 LNMNDREVVALMGAGALGKTHLK 180
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGA +G H K
Sbjct: 159 LNMNDREVVALMGAGALGKTHLK 181
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 196 VSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFAS 255
+S D+ + V GP+ GR D G LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 256 KGFSIQEYVALMGAHTIGFAHCK 278
+ +E VALMGA +G H K
Sbjct: 159 LNMNDREVVALMGAGALGKTHLK 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,183,970
Number of Sequences: 62578
Number of extensions: 299166
Number of successful extensions: 819
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 190
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)