Query 039585
Match_columns 368
No_of_seqs 286 out of 1720
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 11:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 4.3E-87 9.4E-92 647.5 19.8 263 99-368 22-285 (324)
2 cd00693 secretory_peroxidase H 100.0 5.8E-84 1.3E-88 624.5 20.1 264 101-368 1-264 (298)
3 PF00141 peroxidase: Peroxidas 100.0 4.8E-71 1E-75 517.8 9.8 229 118-367 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.9E-58 4.2E-63 441.8 15.8 199 117-368 16-225 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3E-58 6.5E-63 435.9 16.0 209 114-368 12-231 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.2E-57 2.6E-62 430.4 15.6 213 103-368 2-228 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 4.4E-56 9.5E-61 419.1 16.3 200 116-368 18-228 (251)
8 cd00692 ligninase Ligninase an 100.0 5.7E-56 1.2E-60 431.9 16.4 207 110-368 14-256 (328)
9 cd00314 plant_peroxidase_like 100.0 4.3E-53 9.3E-58 402.1 14.7 208 117-368 2-239 (255)
10 cd00649 catalase_peroxidase_1 100.0 2.1E-51 4.6E-56 405.7 16.2 235 116-368 45-374 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 9.1E-49 2E-53 409.1 16.6 249 102-368 39-381 (716)
12 PRK15061 catalase/hydroperoxid 100.0 3.2E-46 6.8E-51 388.0 16.4 249 102-368 41-387 (726)
13 cd08201 plant_peroxidase_like_ 100.0 5.2E-46 1.1E-50 350.3 8.8 191 118-354 27-236 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.4E-35 5.3E-40 281.1 12.8 202 120-367 17-275 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.1E-30 2.4E-35 273.6 13.8 197 122-368 437-689 (716)
16 PRK15061 catalase/hydroperoxid 100.0 5.2E-30 1.1E-34 267.2 13.4 201 120-367 442-700 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.6E-28 3.4E-33 245.4 13.7 233 117-368 71-398 (730)
18 COG0376 KatG Catalase (peroxid 99.2 4.1E-11 9E-16 121.3 8.2 198 120-367 452-704 (730)
19 KOG1924 RhoA GTPase effector D 97.4 0.00066 1.4E-08 72.5 9.4 15 255-269 814-829 (1102)
20 KOG1924 RhoA GTPase effector D 97.2 0.0018 3.8E-08 69.4 9.5 10 183-192 753-762 (1102)
21 PHA03247 large tegument protei 95.3 0.099 2.2E-06 62.8 10.4 11 250-260 3100-3110(3151)
22 PF07174 FAP: Fibronectin-atta 91.9 2 4.4E-05 41.4 10.9 8 148-155 159-166 (297)
23 PHA03378 EBNA-3B; Provisional 90.5 1.5 3.2E-05 47.2 9.2 14 115-128 822-835 (991)
24 PRK12270 kgd alpha-ketoglutara 89.5 2.8 6E-05 47.3 10.7 31 182-212 156-186 (1228)
25 PHA03378 EBNA-3B; Provisional 87.0 3.1 6.8E-05 44.9 8.8 18 115-132 818-835 (991)
26 PRK14950 DNA polymerase III su 86.3 6.5 0.00014 42.1 11.1 12 263-274 569-580 (585)
27 PF07174 FAP: Fibronectin-atta 86.3 8 0.00017 37.4 10.4 7 151-157 138-144 (297)
28 PRK14950 DNA polymerase III su 82.5 4.6 9.9E-05 43.3 8.0 9 115-123 471-479 (585)
29 KOG3671 Actin regulatory prote 82.0 8.9 0.00019 40.1 9.3 7 179-185 497-503 (569)
30 PF01690 PLRV_ORF5: Potato lea 81.9 1.2 2.5E-05 46.1 3.0 9 148-156 191-199 (465)
31 PF01690 PLRV_ORF5: Potato lea 81.3 1.3 2.7E-05 45.8 3.0 8 102-109 76-83 (465)
32 PRK07764 DNA polymerase III su 80.4 23 0.00049 39.8 12.6 34 114-154 515-548 (824)
33 PRK15319 AIDA autotransporter- 79.2 3.6 7.9E-05 48.9 6.1 11 328-338 1981-1991(2039)
34 PRK15313 autotransport protein 75.6 6.2 0.00013 44.3 6.4 8 133-140 677-684 (955)
35 COG0810 TonB Periplasmic prote 71.6 33 0.00072 32.4 9.6 6 177-182 204-209 (244)
36 KOG1923 Rac1 GTPase effector F 65.1 38 0.00082 37.3 9.3 17 215-231 583-599 (830)
37 PHA01732 proline-rich protein 60.8 13 0.00029 29.8 3.8 8 149-156 63-70 (94)
38 KOG1923 Rac1 GTPase effector F 57.9 46 0.001 36.7 8.4 9 137-145 406-414 (830)
39 PF04625 DEC-1_N: DEC-1 protei 55.1 27 0.00058 34.7 5.6 43 103-145 152-194 (407)
40 PRK07764 DNA polymerase III su 53.2 66 0.0014 36.2 9.1 9 135-143 546-554 (824)
41 PTZ00411 transaldolase-like pr 50.2 21 0.00046 35.7 4.2 76 196-271 161-251 (333)
42 PRK12346 transaldolase A; Prov 44.7 27 0.00058 34.7 3.9 76 196-271 150-240 (316)
43 PHA01929 putative scaffolding 42.3 1.6E+02 0.0035 28.6 8.5 34 115-153 105-138 (306)
44 PRK14954 DNA polymerase III su 39.6 1.9E+02 0.0041 31.4 9.8 8 137-144 505-512 (620)
45 PRK13855 type IV secretion sys 39.1 1E+02 0.0022 31.4 7.0 16 7-22 37-52 (376)
46 cd00439 Transaldolase Transald 38.8 33 0.00072 32.8 3.5 65 196-260 140-209 (252)
47 PF06679 DUF1180: Protein of u 36.0 2.1E+02 0.0046 25.7 7.9 7 102-108 94-100 (163)
48 KOG2418 Microtubule-associated 35.2 1.4E+02 0.003 30.4 7.2 11 240-250 284-294 (448)
49 KOG2418 Microtubule-associated 34.1 1.7E+02 0.0036 29.8 7.5 6 328-333 362-367 (448)
50 cd00957 Transaldolase_TalAB Tr 33.8 34 0.00074 33.9 2.8 65 196-261 149-219 (313)
51 PRK05269 transaldolase B; Prov 32.7 48 0.001 32.9 3.6 66 196-261 151-221 (318)
52 KOG0559 Dihydrolipoamide succi 32.6 3.6E+02 0.0078 27.6 9.5 20 117-136 235-254 (457)
53 PRK12270 kgd alpha-ketoglutara 30.0 2.8E+02 0.006 32.2 9.1 21 180-200 242-262 (1228)
54 COG3147 DedD Uncharacterized p 27.8 1.9E+02 0.0042 27.2 6.4 11 180-190 204-214 (226)
55 TIGR00601 rad23 UV excision re 27.2 4.1E+02 0.0088 27.1 9.2 29 113-143 155-183 (378)
56 KOG0559 Dihydrolipoamide succi 26.6 2E+02 0.0044 29.3 6.7 7 258-264 363-369 (457)
57 TIGR00874 talAB transaldolase. 26.4 87 0.0019 31.1 4.2 65 196-260 149-218 (317)
58 PRK13855 type IV secretion sys 25.7 2.5E+02 0.0054 28.7 7.2 22 1-22 34-55 (376)
59 PRK12309 transaldolase/EF-hand 25.5 1E+02 0.0022 31.6 4.6 64 196-260 155-224 (391)
60 cd00956 Transaldolase_FSA Tran 25.5 67 0.0014 29.8 3.0 38 212-259 120-157 (211)
61 PF08782 c-SKI_SMAD_bind: c-SK 24.5 24 0.00051 29.0 -0.1 14 140-154 4-17 (96)
62 PRK01362 putative translaldola 23.1 39 0.00085 31.6 1.0 69 176-261 89-159 (214)
63 PHA03269 envelope glycoprotein 23.1 2.3E+02 0.0049 30.1 6.5 14 266-279 443-456 (566)
64 PRK02919 oxaloacetate decarbox 23.0 66 0.0014 25.6 2.2 13 4-16 22-34 (82)
65 TIGR00875 fsa_talC_mipB fructo 22.2 34 0.00073 32.0 0.4 39 213-261 121-159 (213)
66 PRK10781 rcsF outer membrane l 21.9 2.1E+02 0.0046 24.8 5.2 25 117-146 87-111 (133)
67 KOG0400 40S ribosomal protein 20.2 61 0.0013 28.2 1.5 33 244-276 31-64 (151)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=4.3e-87 Score=647.55 Aligned_cols=263 Identities=38% Similarity=0.668 Sum_probs=248.6
Q ss_pred CcccccccccccCchHHHHHHHHHhhhhccCCccchhhhhhhhhcccccCCCceeeeccCCCCcccccccccCCCCcchh
Q 039585 99 KPALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFNVAERDSDINLSLPGDAF 178 (368)
Q Consensus 99 ~~~L~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~l~~~~~ 178 (368)
..+|+++||+++||++|+||++.|++.+.+++++++++|||+||||||+||||||||+++. .||++.+|.+| |||
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~---~Ek~a~~N~~l--~Gf 96 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN---TEKTALPNLLL--RGY 96 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc---ccccCCCCcCc--chH
Confidence 3569999999999999999999999999999999999999999999999999999998643 69999999999 999
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCC
Q 039585 179 DVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGF 258 (368)
Q Consensus 179 ~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 258 (368)
++|+.||++||++||++|||||||+|||||||+++|||.|.|++||||+++|...++. +||.++.++++|++.|+++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999877774 899999999999999999999
Q ss_pred ChhhhhhhcccceeccccccccccccccCCCCC-CCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhh
Q 039585 259 SIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQ-PTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRG 337 (368)
Q Consensus 259 ~~~dlVaLsGaHtiG~~hc~~f~~Rl~~~~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ 337 (368)
+.+|||+||||||||++||.+|.+|||||.|++ ..||+||+.|+..||+.||..+ +....+.||..||.+|||+||+|
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~n 254 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNG-DGSRRIALDTGSSNRFDASFFSN 254 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCC-CCCccccCCCCCCcccccHHHHH
Confidence 999999999999999999999999999999875 5899999999999999999533 33346789999999999999999
Q ss_pred ccccccccccchhcccCCChHHHHHHhhhCC
Q 039585 338 LPRGLGLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 338 ll~~~glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
|++++|||+|||+|++|++|+.+|++||.|+
T Consensus 255 ll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~ 285 (324)
T PLN03030 255 LKNGRGILESDQKLWTDASTRTFVQRFLGVR 285 (324)
T ss_pred HHhcCCCcCCchHhhcCccHHHHHHHHhccc
Confidence 9999999999999999999999999999863
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.8e-84 Score=624.46 Aligned_cols=264 Identities=48% Similarity=0.846 Sum_probs=253.6
Q ss_pred ccccccccccCchHHHHHHHHHhhhhccCCccchhhhhhhhhcccccCCCceeeeccCCCCcccccccccCCCCcchhHH
Q 039585 101 ALRADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSNAFNVAERDSDINLSLPGDAFDV 180 (368)
Q Consensus 101 ~L~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~l~~~~~~~ 180 (368)
+|+++||+++||++|+||++.|++.+.++++++++||||+||||||+||||||||+++.++..|+++++|.+| +||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l--~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSL--RGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCc--chhHH
Confidence 5899999999999999999999999999999999999999999999999999999988667789999999999 99999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCCh
Q 039585 181 VIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSI 260 (368)
Q Consensus 181 i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 260 (368)
|+.||++||+.||++|||||||+||||+||+++|||.|.|++||+|++++....+ ++||.++.+++++++.|+++||+.
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998877665 789999999999999999999999
Q ss_pred hhhhhhcccceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhccc
Q 039585 261 QEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPR 340 (368)
Q Consensus 261 ~dlVaLsGaHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~ 340 (368)
+|||+|+||||||++||.+|.+|||||+|++++||+||+.|+..|++.||+.+ +++..++||..||.+|||+||+||+.
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~~l~~ 236 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGG-DDDTLVPLDPGTPNTFDNSYYKNLLA 236 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCC-CCCccccCCCCCCCccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999754 45667899999999999999999999
Q ss_pred cccccccchhcccCCChHHHHHHhhhCC
Q 039585 341 GLGLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 341 ~~glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
++|||+|||+|+.|++|+.+|++||+||
T Consensus 237 ~~glL~SD~~L~~d~~t~~~V~~~A~d~ 264 (298)
T cd00693 237 GRGLLTSDQALLSDPRTRAIVNRYAANQ 264 (298)
T ss_pred cccCccCCHHhccCccHHHHHHHHhhCH
Confidence 9999999999999999999999999885
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4.8e-71 Score=517.80 Aligned_cols=229 Identities=49% Similarity=0.862 Sum_probs=208.9
Q ss_pred HHHHHhhhhccCCccchhhhhhhhhcccc-cCCCceeeeccCCCCcccccccccCCCCcchhHHHHHHHHHHHhhCCCCC
Q 039585 118 VREFVHQKQTQSPSTAAGALRVFMHDCFV-DGCDGSVLISSNAFNVAERDSDINLSLPGDAFDVVIKIKNALEDACPGVV 196 (368)
Q Consensus 118 V~~~v~~~~~~~~~~a~~llRl~FHDc~v-~GcDgSill~~~~~~~~E~~~~~N~~l~~~~~~~i~~iK~~le~~cp~~V 196 (368)
|++.|++.+..+++++++||||+|||||+ +|||||||+. ..|+++++|.|| .+++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl-~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGL-RDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTH-HHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCc-ceeeechhhHHhhhcccccCCC
Confidence 78899999999999999999999999999 9999999983 479999999999 2399999999999999999999
Q ss_pred cHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhcccceecccc
Q 039585 197 SCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAHTIGFAH 276 (368)
Q Consensus 197 ScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~~h 276 (368)
||||||+||||+||+.+|||.|.|++||+|++++...++ .+||.++.++++|++.|+++||+.+|||||+||||||++|
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 999999999999999999999999999999999988766 6799999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhccccccccccchhcccCCC
Q 039585 277 CKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPRGLGLLRVDNMLVKDPR 356 (368)
Q Consensus 277 c~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~glL~SD~~L~~d~~ 356 (368)
|.+|. ||| + ..||+||+.|+.. .| ..+ .++.+++| ||.+|||+||++|+.++|+|+||++|++|++
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~--~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~ 219 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSG--GDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPE 219 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SS-STS--GCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTT
T ss_pred ecccc-ccc-c----cccccccccccee---cc-CCC--cccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHH
Confidence 99999 999 5 5799999999988 99 433 33377888 9999999999999999999999999999999
Q ss_pred hHHHHHHhhhC
Q 039585 357 TKPLVDQYASN 367 (368)
Q Consensus 357 t~~~V~~yA~d 367 (368)
|+.+|++||+|
T Consensus 220 t~~~V~~yA~d 230 (230)
T PF00141_consen 220 TRPIVERYAQD 230 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999999987
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.9e-58 Score=441.80 Aligned_cols=199 Identities=33% Similarity=0.434 Sum_probs=178.7
Q ss_pred HHHHHHhhhhccCCccchhhhhhhhhccc-------ccCCCceeeeccCCCCcccccccccCCCCcchhHHHHHHHHHHH
Q 039585 117 IVREFVHQKQTQSPSTAAGALRVFMHDCF-------VDGCDGSVLISSNAFNVAERDSDINLSLPGDAFDVVIKIKNALE 189 (368)
Q Consensus 117 iV~~~v~~~~~~~~~~a~~llRl~FHDc~-------v~GcDgSill~~~~~~~~E~~~~~N~~l~~~~~~~i~~iK~~le 189 (368)
.+++++++ +.+++.+++.||||+||||| ++||||||++. .|+++++|.|| .+||++|+.||+++
T Consensus 16 ~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL-~~g~~vid~iK~~~- 86 (289)
T PLN02608 16 KARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGL-KIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccch-HHHHHHHHHHHHHc-
Confidence 45566644 66789999999999999999 89999999984 69999999999 46999999999987
Q ss_pred hhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhccc
Q 039585 190 DACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGA 269 (368)
Q Consensus 190 ~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGa 269 (368)
++|||||||+||||+||+++|||.|+|++||+|++++. ++++||.++.+++++++.|+++||+.+|||+|+||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 48999999999999999999999999999999999885 45689999999999999999999999999999999
Q ss_pred ceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhcccc--ccc--c
Q 039585 270 HTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPRG--LGL--L 345 (368)
Q Consensus 270 HtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~--~gl--L 345 (368)
||||++||. |+ +|.|. . ..||.+|||+||+||+.+ +|+ |
T Consensus 160 HTiG~ahc~----r~-g~~g~-------------------------------~-~~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 160 HTLGRAHPE----RS-GFDGP-------------------------------W-TKEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred ccccccccc----CC-CCCCC-------------------------------C-CCCCCccChHHHHHHHcCCcCCcccc
Confidence 999999994 65 44320 0 158999999999999998 788 7
Q ss_pred ccchhcccCCChHHHHHHhhhCC
Q 039585 346 RVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 346 ~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
+|||+|+.|++|+.+|++||.||
T Consensus 203 ~SD~~L~~d~~T~~~V~~fA~~~ 225 (289)
T PLN02608 203 PTDKALLEDPEFRPYVELYAKDE 225 (289)
T ss_pred ccCHhhhcChhHHHHHHHHhhCH
Confidence 99999999999999999999885
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3e-58 Score=435.95 Aligned_cols=209 Identities=28% Similarity=0.342 Sum_probs=186.7
Q ss_pred HHHHHHHHHhhhhccCCccchhhhhhhhhcccccCCCceeeeccC---CCCcccccccccCCCCcchhHHHHHHHHHHHh
Q 039585 114 FEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVLISSN---AFNVAERDSDINLSLPGDAFDVVIKIKNALED 190 (368)
Q Consensus 114 ~e~iV~~~v~~~~~~~~~~a~~llRl~FHDc~v~GcDgSill~~~---~~~~~E~~~~~N~~l~~~~~~~i~~iK~~le~ 190 (368)
.+.+|++.|++.+. +++++++||||+|||||+ ||+|+++++. ..+.+|+++++|.+| .++|++|+.||+++
T Consensus 12 ~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L-~~~~~~i~~iK~~~-- 85 (253)
T cd00691 12 DLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGL-DIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccch-HHHHHHHHHHHHHc--
Confidence 57899999999999 999999999999999994 7777666432 123479999999999 58999999999986
Q ss_pred hCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhcccc
Q 039585 191 ACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMGAH 270 (368)
Q Consensus 191 ~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaH 270 (368)
+ +|||||||+||||+||+++|||.|.|++||+|++++....++++||.++.++++|+++|+++||+.+|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 3 7999999999999999999999999999999999998777788999999999999999999999999999999999
Q ss_pred eeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhcccccc-------
Q 039585 271 TIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPRGLG------- 343 (368)
Q Consensus 271 tiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~g------- 343 (368)
|||++||.. ++|.|. |..||.+|||+||+||+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~--------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~ 205 (253)
T cd00691 163 TLGRCHKER-----SGYDGP--------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGL 205 (253)
T ss_pred eeecccccC-----CCCCCC--------------------------------CCCCCCcccHHHHHHHhcCCCccCcCcc
Confidence 999999943 244321 015899999999999999999
Q ss_pred -ccccchhcccCCChHHHHHHhhhCC
Q 039585 344 -LLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 344 -lL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
+|+||++|+.|++|+.+|++||+|+
T Consensus 206 ~~L~sD~~L~~d~~t~~~v~~~a~~~ 231 (253)
T cd00691 206 LMLPTDKALLEDPKFRPYVELYAKDQ 231 (253)
T ss_pred eechhhHHHHcCccHHHHHHHHhhCH
Confidence 9999999999999999999999874
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.2e-57 Score=430.41 Aligned_cols=213 Identities=31% Similarity=0.436 Sum_probs=188.8
Q ss_pred ccccccc--cCchHHHHHHHHHhhhhccCCccchhhhhhhhh-----ccccc--CCCceeeeccCCCCcccccccccCCC
Q 039585 103 RADYYKT--TCPDFEKIVREFVHQKQTQSPSTAAGALRVFMH-----DCFVD--GCDGSVLISSNAFNVAERDSDINLSL 173 (368)
Q Consensus 103 ~~~fY~~--sCp~~e~iV~~~v~~~~~~~~~~a~~llRl~FH-----Dc~v~--GcDgSill~~~~~~~~E~~~~~N~~l 173 (368)
..+||.. .|+.++..+++.+++.+ .++++++.||||+|| ||+++ ||||||.+ ..|+++.+|.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl 74 (250)
T PLN02364 2 TKNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGI 74 (250)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCH
Confidence 3456664 48889999999999987 778999999999999 88876 99999965 369999999998
Q ss_pred CcchhHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHH
Q 039585 174 PGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMF 253 (368)
Q Consensus 174 ~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 253 (368)
.+||++|+.||+++ ++|||||||+||||+||+++|||.|.|++||+|++++.. +++||.++.++++|++.|
T Consensus 75 -~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F 145 (250)
T PLN02364 75 -HIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVF 145 (250)
T ss_pred -HHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHH
Confidence 57999999999998 589999999999999999999999999999999998753 568999999999999999
Q ss_pred HH-CCCChhhhhhhcccceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccch
Q 039585 254 AS-KGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDN 332 (368)
Q Consensus 254 ~~-~Gl~~~dlVaLsGaHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN 332 (368)
++ +||+.+|||||+||||||++|| .|+ +|.|. + ..||.+|||
T Consensus 146 ~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~-------------------------------~-~~tp~~fDn 188 (250)
T PLN02364 146 AKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA-------------------------------W-TSNPLIFDN 188 (250)
T ss_pred HHhcCCCHHHheeeecceeeccccC----CCC-CCCCC-------------------------------C-CCCCCccch
Confidence 97 5999999999999999999999 454 44321 1 158999999
Q ss_pred hhhhhcccc--ccccc--cchhcccCCChHHHHHHhhhCC
Q 039585 333 SYFRGLPRG--LGLLR--VDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 333 ~Yy~~ll~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
+||+||+.+ +|+|. |||+|+.|++|+.+|++||.||
T Consensus 189 ~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~ 228 (250)
T PLN02364 189 SYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADE 228 (250)
T ss_pred HHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCH
Confidence 999999999 89876 9999999999999999999874
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.4e-56 Score=419.09 Aligned_cols=200 Identities=30% Similarity=0.408 Sum_probs=177.7
Q ss_pred HHHHHHHhhhhccCCccchhhhhhhhhcccc-------cCCCceeeeccCCCCcccccccccCCCCcchhHHHHHHHHHH
Q 039585 116 KIVREFVHQKQTQSPSTAAGALRVFMHDCFV-------DGCDGSVLISSNAFNVAERDSDINLSLPGDAFDVVIKIKNAL 188 (368)
Q Consensus 116 ~iV~~~v~~~~~~~~~~a~~llRl~FHDc~v-------~GcDgSill~~~~~~~~E~~~~~N~~l~~~~~~~i~~iK~~l 188 (368)
.-++..+.+.+ .+..+++.+|||+||||++ |||||||++. .|+++++|.|| ..++++|+.||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL-~~~~~~i~~iK~~~ 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGL-DIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCCh-HHHHHHHHHHHHHc
Confidence 34567777766 4569999999999999964 8999999873 69999999999 34999999999998
Q ss_pred HhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhcc
Q 039585 189 EDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMG 268 (368)
Q Consensus 189 e~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 268 (368)
++|||||||+||||+||+++|||.|+|++||+|++++. ++++||.++.++++|++.|+++||+.+|||||+|
T Consensus 90 -----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 57999999999999999999999999999999999874 4578999999999999999999999999999999
Q ss_pred cceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhcccc--ccc--
Q 039585 269 AHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPRG--LGL-- 344 (368)
Q Consensus 269 aHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~--~gl-- 344 (368)
|||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+
T Consensus 162 aHTiG~ah~~----r-~g~~g~-------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~ 204 (251)
T PLN02879 162 GHTLGRCHKE----R-SGFEGA-------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQ 204 (251)
T ss_pred cccccccccc----c-ccCCCC-------------------------------CC-CCccceeHHHHHHHHcCCcCCCcc
Confidence 9999999994 4 344331 22 58999999999999999 888
Q ss_pred cccchhcccCCChHHHHHHhhhCC
Q 039585 345 LRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 345 L~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
|+||++|+.|++|+.+|++||+||
T Consensus 205 L~SD~aL~~D~~t~~~V~~~A~d~ 228 (251)
T PLN02879 205 LPTDKALLDDPLFLPFVEKYAADE 228 (251)
T ss_pred chhhHHHhcCCcHHHHHHHHhhCH
Confidence 679999999999999999999985
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.7e-56 Score=431.85 Aligned_cols=207 Identities=29% Similarity=0.438 Sum_probs=184.2
Q ss_pred cCchHHHHHHHHHhhhhccC---Cccchhhhhhhhhcccc------------cCCCceeeeccCCCCcccccccccCCCC
Q 039585 110 TCPDFEKIVREFVHQKQTQS---PSTAAGALRVFMHDCFV------------DGCDGSVLISSNAFNVAERDSDINLSLP 174 (368)
Q Consensus 110 sCp~~e~iV~~~v~~~~~~~---~~~a~~llRl~FHDc~v------------~GcDgSill~~~~~~~~E~~~~~N~~l~ 174 (368)
.| +|..|+++|++.|..+ ...|+.+|||+||||++ +||||||||+.+ .|+++++|.||
T Consensus 14 cc--~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL- 86 (328)
T cd00692 14 CC--VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGL- 86 (328)
T ss_pred hc--chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCH-
Confidence 56 6899999999999754 45567799999999996 899999999743 69999999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHH-hcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHH
Q 039585 175 GDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVV-MAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMF 253 (368)
Q Consensus 175 ~~~~~~i~~iK~~le~~cp~~VScADilalAa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 253 (368)
+ ++|+.||..+|+.| |||||||+||||+||+ +.|||+|.|++||+|++++. ++++||.++.++++|++.|
T Consensus 87 -~--~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F 157 (328)
T cd00692 87 -D--EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARF 157 (328)
T ss_pred -H--HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHH
Confidence 4 99999999999998 9999999999999999 56999999999999999875 4568999999999999999
Q ss_pred HHCCCChhhhhhhcccceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchh
Q 039585 254 ASKGFSIQEYVALMGAHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNS 333 (368)
Q Consensus 254 ~~~Gl~~~dlVaLsGaHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~ 333 (368)
+++||+.+|||+|+||||||++|. .||+++ + +++| .||.+|||+
T Consensus 158 ~~~Gf~~~E~VaLsGAHTiG~a~~---------------~Dps~~--------------g------~p~D-~TP~~FDn~ 201 (328)
T cd00692 158 ADAGFSPDELVALLAAHSVAAQDF---------------VDPSIA--------------G------TPFD-STPGVFDTQ 201 (328)
T ss_pred HHcCCCHHHHhhhcccccccccCC---------------CCCCCC--------------C------CCCC-CCcchhcHH
Confidence 999999999999999999999982 356653 1 3577 599999999
Q ss_pred hhhhcc-cccc-------------------ccccchhcccCCChHHHHHHhhhCC
Q 039585 334 YFRGLP-RGLG-------------------LLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 334 Yy~~ll-~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
||+|++ .+++ +|+||++|+.|++|+.+|++||+||
T Consensus 202 Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq 256 (328)
T cd00692 202 FFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQ 256 (328)
T ss_pred HHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCH
Confidence 999987 5555 5999999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.3e-53 Score=402.10 Aligned_cols=208 Identities=32% Similarity=0.424 Sum_probs=189.3
Q ss_pred HHHHHHhhhhccCCccchhhhhhhhhccccc--------CCCceeeeccCCCCcccccccccCCCCcchhHHHHHHHHHH
Q 039585 117 IVREFVHQKQTQSPSTAAGALRVFMHDCFVD--------GCDGSVLISSNAFNVAERDSDINLSLPGDAFDVVIKIKNAL 188 (368)
Q Consensus 117 iV~~~v~~~~~~~~~~a~~llRl~FHDc~v~--------GcDgSill~~~~~~~~E~~~~~N~~l~~~~~~~i~~iK~~l 188 (368)
.|++.|++.+.++..+++++|||+|||||+. ||||||+++ .|+++++|.+| .+++++|+.||+++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l-~~~~~~l~~ik~~~ 74 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGL-DKALRALEPIKSAY 74 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccH-HHHHHHHHHHHHHc
Confidence 4778888888889999999999999999996 999999996 49999999997 58999999999999
Q ss_pred HhhCCCCCcHHHHHHhhhhhHHHhc--CCCCcccccCCcCCcccc--ccCCCCCCCCCCCCHHHHHHHHHHCCCChhhhh
Q 039585 189 EDACPGVVSCADILTASTRNLVVMA--GGPRFNVSFGRKDGLVSQ--AARIPGNLPTNNMTMDEILKMFASKGFSIQEYV 264 (368)
Q Consensus 189 e~~cp~~VScADilalAa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlV 264 (368)
|. +++|||||||+|||++||+.+ |||.|.|++||+|++.+. ...+.+++|.+..+++++++.|+++||+.+|||
T Consensus 75 ~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 75 DG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred CC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 88 889999999999999999999 999999999999999774 344566788888899999999999999999999
Q ss_pred hhc-cccee-ccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhccccc
Q 039585 265 ALM-GAHTI-GFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPRGL 342 (368)
Q Consensus 265 aLs-GaHti-G~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~ 342 (368)
||+ ||||| |++||..|..|+ |. +|..||.+|||+||++|+.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~~-----------~~~~tp~~fDN~yy~~l~~~~ 197 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------SG-----------LWTSTPFTFDNAYFKNLLDMN 197 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------CC-----------CCCCCCCccchHHHHHHhcCC
Confidence 999 99999 999998887664 21 234799999999999999998
Q ss_pred ----------------cccccchhcccCCChHHHHHHhhhCC
Q 039585 343 ----------------GLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 343 ----------------glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
++|+||++|+.|++|+.+|++||+|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~ 239 (255)
T cd00314 198 WEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQ 239 (255)
T ss_pred cccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCH
Confidence 99999999999999999999999874
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.1e-51 Score=405.68 Aligned_cols=235 Identities=22% Similarity=0.249 Sum_probs=206.8
Q ss_pred HHHHHHHhhhhccC--------Cccchhhhhhhhhcccc-------cCCC-ceeeeccCCCCcccccccccCCCCcchhH
Q 039585 116 KIVREFVHQKQTQS--------PSTAAGALRVFMHDCFV-------DGCD-GSVLISSNAFNVAERDSDINLSLPGDAFD 179 (368)
Q Consensus 116 ~iV~~~v~~~~~~~--------~~~a~~llRl~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~l~~~~~~ 179 (368)
..|++.|++++... ..+++.||||+|||+.+ |||+ |+|++. .|++++.|.+| +++++
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL-~~a~~ 117 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNL-DKARR 117 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhH-HHHHH
Confidence 56888888888754 48999999999999986 8997 889885 69999999999 78999
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCcccccc--------------------------
Q 039585 180 VVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAA-------------------------- 233 (368)
Q Consensus 180 ~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~-------------------------- 233 (368)
+++.||+++ +..||+||||+||+.+|||.+|||.|.+..||.|.......
T Consensus 118 ~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~ 193 (409)
T cd00649 118 LLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLA 193 (409)
T ss_pred HHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchh
Confidence 999999987 44699999999999999999999999999999999654320
Q ss_pred ---------CCCC--CCCCCCCCHHHHHHHHHHCCCChhhhhhh-cccceeccccccccccccccCCCCCCCCCCCCHHH
Q 039585 234 ---------RIPG--NLPTNNMTMDEILKMFASKGFSIQEYVAL-MGAHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKY 301 (368)
Q Consensus 234 ---------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~ 301 (368)
.+++ .||++..++.+|++.|++||||++||||| +||||||++||.+|.+||. +||++++.|
T Consensus 194 a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~ 266 (409)
T cd00649 194 AVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIE 266 (409)
T ss_pred hhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHH
Confidence 0223 79999999999999999999999999999 5999999999999999982 699999999
Q ss_pred HHHHh--hhcCCCCCCCcccccCC---CCCCCccchhhhhhccc------------------------------------
Q 039585 302 AEALK--AACKNHEQNITMTAFND---VMSPGKFDNSYFRGLPR------------------------------------ 340 (368)
Q Consensus 302 ~~~L~--~~Cp~~~~~~~~~~~lD---~~tp~~FDN~Yy~~ll~------------------------------------ 340 (368)
++.|+ ++|+.+..+++..+.+| +.||++|||+||++|+.
T Consensus 267 ~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~ 346 (409)
T cd00649 267 QQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKH 346 (409)
T ss_pred HHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCcccccccc
Confidence 99996 89996431344466788 57999999999999998
Q ss_pred cccccccchhcccCCChHHHHHHhhhCC
Q 039585 341 GLGLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 341 ~~glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
++|||+||++|+.|++|+++|++||+||
T Consensus 347 ~~gmL~SD~aL~~Dp~tr~iV~~yA~d~ 374 (409)
T cd00649 347 APMMLTTDLALRFDPEYEKISRRFLENP 374 (409)
T ss_pred CcccchhhHhhhcCccHHHHHHHHhcCH
Confidence 6799999999999999999999999985
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9.1e-49 Score=409.15 Aligned_cols=249 Identities=23% Similarity=0.250 Sum_probs=210.4
Q ss_pred ccccc-ccccCchH-HHHHHHHHhhhhccC--------Cccchhhhhhhhhcccc-------cCCC-ceeeeccCCCCcc
Q 039585 102 LRADY-YKTTCPDF-EKIVREFVHQKQTQS--------PSTAAGALRVFMHDCFV-------DGCD-GSVLISSNAFNVA 163 (368)
Q Consensus 102 L~~~f-Y~~sCp~~-e~iV~~~v~~~~~~~--------~~~a~~llRl~FHDc~v-------~GcD-gSill~~~~~~~~ 163 (368)
+..+| |.+.+-.+ ...|+++|++++... ..+++.+|||+||++.+ |||+ |+|++. .
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P 112 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------P 112 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------c
Confidence 44444 44444332 346888999888764 47999999999999986 7984 889875 6
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCcccc------------
Q 039585 164 ERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQ------------ 231 (368)
Q Consensus 164 E~~~~~N~~l~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~------------ 231 (368)
|++++.|.+| ++++.+++.||++ |+++|||||||+|||++||+.+|||.|.|.+||+|+....
T Consensus 113 ~~sw~~N~~L-dka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l 187 (716)
T TIGR00198 113 LNSWPDNVNL-DKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWL 187 (716)
T ss_pred ccCchhhhhH-HHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchh
Confidence 9999999999 7899999999886 7899999999999999999999999999999999994321
Q ss_pred ---c-----------c----------CCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhc-ccceecccccccccccccc
Q 039585 232 ---A-----------A----------RIPGNLPTNNMTMDEILKMFASKGFSIQEYVALM-GAHTIGFAHCKEFSDRLFK 286 (368)
Q Consensus 232 ---~-----------~----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHtiG~~hc~~f~~Rl~~ 286 (368)
. . +....+|++..++++|++.|++||||++|||||+ ||||||++||.+|.+||
T Consensus 188 ~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-- 265 (716)
T TIGR00198 188 TSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-- 265 (716)
T ss_pred hccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC--
Confidence 0 0 1112699999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhcCCC-CC-CCcccccCC---CCCCCccchhhhhhcccc--------------------
Q 039585 287 FAPNQPTDPELNPKYAEALKAACKNH-EQ-NITMTAFND---VMSPGKFDNSYFRGLPRG-------------------- 341 (368)
Q Consensus 287 ~~g~~~~dp~~~~~~~~~L~~~Cp~~-~~-~~~~~~~lD---~~tp~~FDN~Yy~~ll~~-------------------- 341 (368)
++||++++.|++.|+.+|+.. +. .++..+.+| +.||++|||+||+||+.+
T Consensus 266 -----g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~ 340 (716)
T TIGR00198 266 -----GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAP 340 (716)
T ss_pred -----CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccc
Confidence 279999999999999999842 11 233357788 579999999999999975
Q ss_pred --------------ccccccchhcccCCChHHHHHHhhhCC
Q 039585 342 --------------LGLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 342 --------------~glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
+|||+||++|+.|++|+.+|++||.|+
T Consensus 341 ~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~ 381 (716)
T TIGR00198 341 EIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREP 381 (716)
T ss_pred cccccccccccccccCccchhHHhccCccHHHHHHHHhcCH
Confidence 799999999999999999999999884
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.2e-46 Score=388.02 Aligned_cols=249 Identities=21% Similarity=0.261 Sum_probs=210.8
Q ss_pred ccccc-ccccCchH-HHHHHHHHhhhhccC--------Cccchhhhhhhhhcccc-------cCCC-ceeeeccCCCCcc
Q 039585 102 LRADY-YKTTCPDF-EKIVREFVHQKQTQS--------PSTAAGALRVFMHDCFV-------DGCD-GSVLISSNAFNVA 163 (368)
Q Consensus 102 L~~~f-Y~~sCp~~-e~iV~~~v~~~~~~~--------~~~a~~llRl~FHDc~v-------~GcD-gSill~~~~~~~~ 163 (368)
+..+| |.+-+-.+ ...|++.|++++... ..+++.+|||+||++.+ |||+ |+|++. .
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------p 114 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------P 114 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------c
Confidence 44444 44444333 356888999888754 47999999999999986 7996 788875 6
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCcccccc----------
Q 039585 164 ERDSDINLSLPGDAFDVVIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAA---------- 233 (368)
Q Consensus 164 E~~~~~N~~l~~~~~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~---------- 233 (368)
|++++.|.+| ++++.+++.||+++ +..||+||||+||+.+|||.+|||.|.+..||.|.......
T Consensus 115 e~~w~~N~gL-~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l 189 (726)
T PRK15061 115 LNSWPDNVNL-DKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWL 189 (726)
T ss_pred cccchhhhhH-HHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccc
Confidence 9999999999 78999999999987 45699999999999999999999999999999998653320
Q ss_pred -------C---------------------CCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhc-ccceecccccccccccc
Q 039585 234 -------R---------------------IPGNLPTNNMTMDEILKMFASKGFSIQEYVALM-GAHTIGFAHCKEFSDRL 284 (368)
Q Consensus 234 -------~---------------------~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHtiG~~hc~~f~~Rl 284 (368)
. -...+|++..++.+|++.|++||||++|||||+ ||||||++||..|.+||
T Consensus 190 ~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl 269 (726)
T PRK15061 190 GGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV 269 (726)
T ss_pred ccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc
Confidence 0 012379999999999999999999999999995 99999999999999998
Q ss_pred ccCCCCCCCCCCCCHHHHHHHh--hhcCCCCCCCcccccCC---CCCCCccchhhhhhcccc------------------
Q 039585 285 FKFAPNQPTDPELNPKYAEALK--AACKNHEQNITMTAFND---VMSPGKFDNSYFRGLPRG------------------ 341 (368)
Q Consensus 285 ~~~~g~~~~dp~~~~~~~~~L~--~~Cp~~~~~~~~~~~lD---~~tp~~FDN~Yy~~ll~~------------------ 341 (368)
++||++++.|++.|+ +.|+.+...++....+| +.||++|||+||++|+.+
T Consensus 270 -------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~ 342 (726)
T PRK15061 270 -------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKD 342 (726)
T ss_pred -------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccC
Confidence 369999999999996 89986321344566788 679999999999999985
Q ss_pred ------------------ccccccchhcccCCChHHHHHHhhhCC
Q 039585 342 ------------------LGLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 342 ------------------~glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
+|||+||++|+.|++|+++|++||+|+
T Consensus 343 ~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~ 387 (726)
T PRK15061 343 GAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENP 387 (726)
T ss_pred ccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCH
Confidence 699999999999999999999999885
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.2e-46 Score=350.33 Aligned_cols=191 Identities=23% Similarity=0.258 Sum_probs=153.3
Q ss_pred HHHHHhhhhccCCccchhhhhhhhhccc-------ccCCCceeeeccCCCCccccc-ccccCCCCcchhHHHHHHHHHHH
Q 039585 118 VREFVHQKQTQSPSTAAGALRVFMHDCF-------VDGCDGSVLISSNAFNVAERD-SDINLSLPGDAFDVVIKIKNALE 189 (368)
Q Consensus 118 V~~~v~~~~~~~~~~a~~llRl~FHDc~-------v~GcDgSill~~~~~~~~E~~-~~~N~~l~~~~~~~i~~iK~~le 189 (368)
|..........+++++++||||+||||| ++||||||+|+.. .+|+. ...|.+| ++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l--~~~~~i~~~----- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTL--NFFVNFYSP----- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhcc--ccceeeccC-----
Confidence 3334444556788999999999999999 8999999999632 35665 4445566 777776543
Q ss_pred hhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhcc-
Q 039585 190 DACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALMG- 268 (368)
Q Consensus 190 ~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG- 268 (368)
+||||||||||||+||+.+|||.|+|++||+|++++... .||.++.++++|++.|+++||+.+|||+|+|
T Consensus 97 -----~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsgg 167 (264)
T cd08201 97 -----RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVAC 167 (264)
T ss_pred -----ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecC
Confidence 599999999999999999999999999999999987643 3999999999999999999999999999995
Q ss_pred cceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCccchhhhhhccccc--c---
Q 039585 269 AHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKFDNSYFRGLPRGL--G--- 343 (368)
Q Consensus 269 aHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~--g--- 343 (368)
|||||++||..|.+++-. |. ..+...++| .||.+|||+||.+++.+. +
T Consensus 168 aHTiG~ahc~~f~~~~~~--g~------------------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~ 220 (264)
T cd08201 168 GHTLGGVHSEDFPEIVPP--GS------------------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLV 220 (264)
T ss_pred CeeeeecccccchhhcCC--cc------------------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCcee
Confidence 999999999998776521 00 001124566 699999999999999863 2
Q ss_pred -----ccccchhcccC
Q 039585 344 -----LLRVDNMLVKD 354 (368)
Q Consensus 344 -----lL~SD~~L~~d 354 (368)
-+.||..+++.
T Consensus 221 ~~~~~~~~sd~r~f~~ 236 (264)
T cd08201 221 VGPNNTTNSDLRIFSS 236 (264)
T ss_pred ecCCCCccchhhheec
Confidence 34788888763
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.4e-35 Score=281.14 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=162.7
Q ss_pred HHHhhhhccCCccchhhhhhhhhcccc-------cCCCce-eeeccCCCCcccccccccCC--CCcchhHHHHHHHHHHH
Q 039585 120 EFVHQKQTQSPSTAAGALRVFMHDCFV-------DGCDGS-VLISSNAFNVAERDSDINLS--LPGDAFDVVIKIKNALE 189 (368)
Q Consensus 120 ~~v~~~~~~~~~~a~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~--l~~~~~~~i~~iK~~le 189 (368)
+.|++.+....-+++.||||+||++.+ |||+|+ |.|. .|++|+.|.+ | .+++.+++.||+++.
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L-~~~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEEL-AKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHH-HHHHHHHHHHHHHhc
Confidence 567777777778899999999999986 899999 7774 7999999998 9 678999999999984
Q ss_pred hh-CC-CCCcHHHHHHhhhhhHHHhcCC-----CCcccccCCcCCccccccCC--CCCCCCCC------------CCHHH
Q 039585 190 DA-CP-GVVSCADILTASTRNLVVMAGG-----PRFNVSFGRKDGLVSQAARI--PGNLPTNN------------MTMDE 248 (368)
Q Consensus 190 ~~-cp-~~VScADilalAa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~ 248 (368)
.. -+ ..||+||+|+||+.+|||.+|| |.|++..||.|+........ ...+|.+. ...+.
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 21 11 2699999999999999999999 99999999999986532110 12345332 13478
Q ss_pred HHHHHHHCCCChhhhhhhcccc-eeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCC
Q 039585 249 ILKMFASKGFSIQEYVALMGAH-TIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSP 327 (368)
Q Consensus 249 l~~~F~~~Gl~~~dlVaLsGaH-tiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp 327 (368)
|++.|.++|||++|||||+||| ++|++|..++ .| ++ +.+|
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-------~G--------------------~w------------T~~p 210 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG--------------------VF------------TDRP 210 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC--------------------CC------------cCCC
Confidence 9999999999999999999997 7999885321 11 22 1479
Q ss_pred Cccchhhhhhcccc----------------------cc---ccccchhcccCCChHHHHHHhhhC
Q 039585 328 GKFDNSYFRGLPRG----------------------LG---LLRVDNMLVKDPRTKPLVDQYASN 367 (368)
Q Consensus 328 ~~FDN~Yy~~ll~~----------------------~g---lL~SD~~L~~d~~t~~~V~~yA~d 367 (368)
.+|||.||+||+.. .. ++.+|.+|..|+++|.+|+.||+|
T Consensus 211 ~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~d 275 (297)
T cd08200 211 GVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASD 275 (297)
T ss_pred CccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcc
Confidence 99999999999951 11 267899999999999999999997
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=1.1e-30 Score=273.56 Aligned_cols=197 Identities=18% Similarity=0.224 Sum_probs=156.4
Q ss_pred HhhhhccCCccchhhhhhhhhcccc-------cCCCce-eeeccCCCCccccccccc--CCCCcchhHHHHHHHHHHHhh
Q 039585 122 VHQKQTQSPSTAAGALRVFMHDCFV-------DGCDGS-VLISSNAFNVAERDSDIN--LSLPGDAFDVVIKIKNALEDA 191 (368)
Q Consensus 122 v~~~~~~~~~~a~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N--~~l~~~~~~~i~~iK~~le~~ 191 (368)
+++.+....-.++.||||+||++.+ |||+|+ |+|. .|++++.| .+| .+.+++++.||+++..
T Consensus 437 lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL-~~vl~~Le~Ik~~f~~- 508 (716)
T TIGR00198 437 LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRL-AKVLAVLEKIQAEFAK- 508 (716)
T ss_pred HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHH-HHHHHHHHHHHHHcCC-
Confidence 3334556677889999999999986 899999 8775 79999999 899 6889999999999842
Q ss_pred CCCCCcHHHHHHhhhhhHHHhc---CCC--CcccccCCcCCccccccCCCCCCC-----CC----------CCCHHHHHH
Q 039585 192 CPGVVSCADILTASTRNLVVMA---GGP--RFNVSFGRKDGLVSQAARIPGNLP-----TN----------NMTMDEILK 251 (368)
Q Consensus 192 cp~~VScADilalAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP-----~p----------~~~~~~l~~ 251 (368)
..||+||||+||+.+|||.+ ||| .|++..||.|+..... +++...+ +. ......|++
T Consensus 509 --~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d 585 (716)
T TIGR00198 509 --GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLD 585 (716)
T ss_pred --CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHH
Confidence 26999999999999999998 898 5788999999976532 2222222 11 123566889
Q ss_pred HHHHCCCChhhhhhhccc-ceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCcc
Q 039585 252 MFASKGFSIQEYVALMGA-HTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGKF 330 (368)
Q Consensus 252 ~F~~~Gl~~~dlVaLsGa-HtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~F 330 (368)
.|.++||++.|||||+|| |++|++|..++ .| ++ +.+|.+|
T Consensus 586 ~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~G--------------------~~------------T~~p~~f 626 (716)
T TIGR00198 586 KAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------HG--------------------VF------------TDRVGVL 626 (716)
T ss_pred HHHhCCCChHHHHheecchhhccccCCCCC-------CC--------------------CC------------cCCCCcc
Confidence 999999999999999999 59999996321 11 11 1479999
Q ss_pred chhhhhhcccc----------------------c-ccc--ccchhcccCCChHHHHHHhhhCC
Q 039585 331 DNSYFRGLPRG----------------------L-GLL--RVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 331 DN~Yy~~ll~~----------------------~-glL--~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
||.||+|||.. . .++ .+|.+|..|+++|.+|+.||+|+
T Consensus 627 ~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd 689 (716)
T TIGR00198 627 SNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDD 689 (716)
T ss_pred ccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhccc
Confidence 99999999862 1 222 67999999999999999999984
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.96 E-value=5.2e-30 Score=267.18 Aligned_cols=201 Identities=19% Similarity=0.225 Sum_probs=162.0
Q ss_pred HHHhhhhccCCccchhhhhhhhhcccc-------cCCCce-eeeccCCCCcccccccccC--CCCcchhHHHHHHHHHHH
Q 039585 120 EFVHQKQTQSPSTAAGALRVFMHDCFV-------DGCDGS-VLISSNAFNVAERDSDINL--SLPGDAFDVVIKIKNALE 189 (368)
Q Consensus 120 ~~v~~~~~~~~~~a~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~--~l~~~~~~~i~~iK~~le 189 (368)
..+++.+....-..+.|||++||++.+ ||++|+ |+|. .|++++.|+ +| .+.+++++.||+++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L-~~vl~~LE~Ik~~f~ 514 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQL-AKVLAVLEGIQAEFN 514 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHH-HHHHHHHHHHHHHHh
Confidence 566777777777889999999999976 899999 8875 799999998 89 578999999999985
Q ss_pred hhC--CCCCcHHHHHHhhhhhHHHhc---CC--CCcccccCCcCCccccccCCC---CCCCCCC------------CCHH
Q 039585 190 DAC--PGVVSCADILTASTRNLVVMA---GG--PRFNVSFGRKDGLVSQAARIP---GNLPTNN------------MTMD 247 (368)
Q Consensus 190 ~~c--p~~VScADilalAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~ 247 (368)
..- ...||+||||+||+.+|||.+ || |.|++..||.|+..... +.+ ..+|... ...+
T Consensus 515 ~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~ 593 (726)
T PRK15061 515 AAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEE 593 (726)
T ss_pred hccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHH
Confidence 432 125999999999999999998 68 89999999999976532 222 2456543 1247
Q ss_pred HHHHHHHHCCCChhhhhhhcccc-eeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCC
Q 039585 248 EILKMFASKGFSIQEYVALMGAH-TIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMS 326 (368)
Q Consensus 248 ~l~~~F~~~Gl~~~dlVaLsGaH-tiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~t 326 (368)
.|++.|+++||++.|||||+||| ++|++|..++ .| ++ +.+
T Consensus 594 ~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G--------------------~~------------T~~ 634 (726)
T PRK15061 594 LLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG--------------------VF------------TDR 634 (726)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC--------------------CC------------cCC
Confidence 89999999999999999999997 7899884321 11 11 147
Q ss_pred CCccchhhhhhcccc----------------------c-cc--cccchhcccCCChHHHHHHhhhC
Q 039585 327 PGKFDNSYFRGLPRG----------------------L-GL--LRVDNMLVKDPRTKPLVDQYASN 367 (368)
Q Consensus 327 p~~FDN~Yy~~ll~~----------------------~-gl--L~SD~~L~~d~~t~~~V~~yA~d 367 (368)
|.+|||.||+||+.. . .+ +.+|..|.+|+++|.+|+.||+|
T Consensus 635 p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~d 700 (726)
T PRK15061 635 PGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASD 700 (726)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcc
Confidence 999999999999951 1 12 47899999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=245.42 Aligned_cols=233 Identities=21% Similarity=0.235 Sum_probs=184.0
Q ss_pred HHHHHHhhhhccC--------Cccchhhhhhhhhcccc-------cCCC-ceeeeccCCCCcccccccccCCCCcchhHH
Q 039585 117 IVREFVHQKQTQS--------PSTAAGALRVFMHDCFV-------DGCD-GSVLISSNAFNVAERDSDINLSLPGDAFDV 180 (368)
Q Consensus 117 iV~~~v~~~~~~~--------~~~a~~llRl~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~l~~~~~~~ 180 (368)
.|+..++.++... ...++.+|||+||-+++ ||.. |..++ ..+.+++.|.+| ++++.+
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRF------aPlnSWPDN~nL-DKarRL 143 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNANL-DKARRL 143 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceec------ccccCCCcccch-HHHHHH
Confidence 4667777776654 36889999999999986 3443 44554 367889999999 899999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHhhhhhHHHhcCCCCcccccCCcCCccccc----------------------------
Q 039585 181 VIKIKNALEDACPGVVSCADILTASTRNLVVMAGGPRFNVSFGRKDGLVSQA---------------------------- 232 (368)
Q Consensus 181 i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------- 232 (368)
++.||+++ +..||+||||.||+.+|++.+|++.|.+..||.|-.....
T Consensus 144 LWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaa 219 (730)
T COG0376 144 LWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAA 219 (730)
T ss_pred hhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhh
Confidence 99999997 5689999999999999999999999999999999766543
Q ss_pred ----------cCCCCCCCCCCCCHHHHHHHHHHCCCChhhhhhhc-ccceeccccccccccccccCCCCCCCCCCCCHHH
Q 039585 233 ----------ARIPGNLPTNNMTMDEILKMFASKGFSIQEYVALM-GAHTIGFAHCKEFSDRLFKFAPNQPTDPELNPKY 301 (368)
Q Consensus 233 ----------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~ 301 (368)
.+ .+..|++..+..+++..|++|++|++|+|||+ ||||+|.+|...-.+.+ +++|.-.+--
T Consensus 220 vqMGLIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie 291 (730)
T COG0376 220 VQMGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIE 291 (730)
T ss_pred heeeeEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchh
Confidence 12 24689999999999999999999999999998 69999999976533322 3577666655
Q ss_pred HHHHhhh--cCCCCCCCcccccCC---CCCCCccchhhhhhcccc-----------------------------------
Q 039585 302 AEALKAA--CKNHEQNITMTAFND---VMSPGKFDNSYFRGLPRG----------------------------------- 341 (368)
Q Consensus 302 ~~~L~~~--Cp~~~~~~~~~~~lD---~~tp~~FDN~Yy~~ll~~----------------------------------- 341 (368)
.+.|-.. |..+...++.+..+. ..||++|||+||.+|+..
T Consensus 292 ~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~ 371 (730)
T COG0376 292 QQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHG 371 (730)
T ss_pred hhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccC
Confidence 6666543 322110233344444 468999999999999852
Q ss_pred ccccccchhcccCCChHHHHHHhhhCC
Q 039585 342 LGLLRVDNMLVKDPRTKPLVDQYASNE 368 (368)
Q Consensus 342 ~glL~SD~~L~~d~~t~~~V~~yA~d~ 368 (368)
-+||++|.+|..|++++++.++|..|+
T Consensus 372 p~MlttDlaLr~DP~Y~kIs~rf~e~p 398 (730)
T COG0376 372 PMMLTTDLALRFDPEYEKISRRFLEDP 398 (730)
T ss_pred ceeeccchhhhcChHHHHHHHHHHhCH
Confidence 269999999999999999999998874
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=4.1e-11 Score=121.27 Aligned_cols=198 Identities=21% Similarity=0.279 Sum_probs=136.9
Q ss_pred HHHhhhhccCCccchhhhhhhhhcccc-------cCCCce-eeeccCCCCcccccccccC--CCCcchhHHHHHHHHHHH
Q 039585 120 EFVHQKQTQSPSTAAGALRVFMHDCFV-------DGCDGS-VLISSNAFNVAERDSDINL--SLPGDAFDVVIKIKNALE 189 (368)
Q Consensus 120 ~~v~~~~~~~~~~a~~llRl~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~--~l~~~~~~~i~~iK~~le 189 (368)
..++..+....-....|+-.+|..+-+ ||.+|. |.|. +.++|+.|. -| .+.+.+++.|++.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l-~kvl~~le~iq~~fn 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAEL-AKVLAVLEKIQKEFN 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHH-HHHHHHHHHHHHHhc
Confidence 355666666677778899999988754 799988 6664 689999995 45 367888999998886
Q ss_pred hhCCCCCcHHHHHHhhhhhHHHh---cCCCCc--ccccCCcCCccccccCCCCCC--CCC--C----------CCHHHHH
Q 039585 190 DACPGVVSCADILTASTRNLVVM---AGGPRF--NVSFGRKDGLVSQAARIPGNL--PTN--N----------MTMDEIL 250 (368)
Q Consensus 190 ~~cp~~VScADilalAa~~av~~---~GGP~~--~v~~GR~D~~~s~~~~~~~~l--P~p--~----------~~~~~l~ 250 (368)
..||.||+|+|++..|||. .+|-.+ ++..||.|+...........+ |-. + ....-|+
T Consensus 525 ----kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ----KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ----CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 3599999999999999986 467655 456899998654321111111 111 1 1234467
Q ss_pred HHHHHCCCChhhhhhhccc-ceeccccccccccccccCCCCCCCCCCCCHHHHHHHhhhcCCCCCCCcccccCCCCCCCc
Q 039585 251 KMFASKGFSIQEYVALMGA-HTIGFAHCKEFSDRLFKFAPNQPTDPELNPKYAEALKAACKNHEQNITMTAFNDVMSPGK 329 (368)
Q Consensus 251 ~~F~~~Gl~~~dlVaLsGa-HtiG~~hc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~ 329 (368)
++-+-++|+.-||++|+|| ..+|..+. |+ ...+.-| .|.+
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~g-----------~s--------------------------~~GVfT~--~pg~ 641 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANYG-----------GS--------------------------KHGVFTD--RPGV 641 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCCC-----------CC--------------------------ccceecc--Cccc
Confidence 8888899999999999987 44454321 11 0112222 5677
Q ss_pred cchhhhhhcccc----------c----------cc-----cccchhcccCCChHHHHHHhhhC
Q 039585 330 FDNSYFRGLPRG----------L----------GL-----LRVDNMLVKDPRTKPLVDQYASN 367 (368)
Q Consensus 330 FDN~Yy~~ll~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~yA~d 367 (368)
+.|.||.||+.. + |- -..|..+-++++.|.+.+.||.|
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~d 704 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASD 704 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhcc
Confidence 778888887752 1 21 14677777888999999999876
No 19
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.41 E-value=0.00066 Score=72.51 Aligned_cols=15 Identities=47% Similarity=0.600 Sum_probs=9.5
Q ss_pred HCCCCh-hhhhhhccc
Q 039585 255 SKGFSI-QEYVALMGA 269 (368)
Q Consensus 255 ~~Gl~~-~dlVaLsGa 269 (368)
+.+|+. -|+|.|+|-
T Consensus 814 SesFs~lLeLvLl~GN 829 (1102)
T KOG1924|consen 814 SESFSKLLELVLLVGN 829 (1102)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 456643 678877763
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.18 E-value=0.0018 Score=69.42 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=4.1
Q ss_pred HHHHHHHhhC
Q 039585 183 KIKNALEDAC 192 (368)
Q Consensus 183 ~iK~~le~~c 192 (368)
.+|+++|..|
T Consensus 753 e~Kaeye~l~ 762 (1102)
T KOG1924|consen 753 ELKAEYEDLP 762 (1102)
T ss_pred HHHHhccCCC
Confidence 3444444333
No 21
>PHA03247 large tegument protein UL36; Provisional
Probab=95.27 E-value=0.099 Score=62.76 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=7.5
Q ss_pred HHHHHHCCCCh
Q 039585 250 LKMFASKGFSI 260 (368)
Q Consensus 250 ~~~F~~~Gl~~ 260 (368)
+.+|+.-|++.
T Consensus 3100 RrY~r~Tg~sa 3110 (3151)
T PHA03247 3100 RRYVRSTGRSA 3110 (3151)
T ss_pred HHHHhhccHHH
Confidence 46667777775
No 22
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=91.93 E-value=2 Score=41.41 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=4.7
Q ss_pred CCCceeee
Q 039585 148 GCDGSVLI 155 (368)
Q Consensus 148 GcDgSill 155 (368)
+-|++|+|
T Consensus 159 andt~v~l 166 (297)
T PF07174_consen 159 ANDTSVVL 166 (297)
T ss_pred CCCceEEe
Confidence 35666665
No 23
>PHA03378 EBNA-3B; Provisional
Probab=90.50 E-value=1.5 Score=47.24 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhcc
Q 039585 115 EKIVREFVHQKQTQ 128 (368)
Q Consensus 115 e~iV~~~v~~~~~~ 128 (368)
..|+++.+..-+++
T Consensus 822 k~ilrqlltggvk~ 835 (991)
T PHA03378 822 KQILRQLLTGGVKR 835 (991)
T ss_pred HHHHHHHhhccccc
Confidence 45666555555444
No 24
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=89.48 E-value=2.8 Score=47.33 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCCCCcHHHHHHhhhhhHHHh
Q 039585 182 IKIKNALEDACPGVVSCADILTASTRNLVVM 212 (368)
Q Consensus 182 ~~iK~~le~~cp~~VScADilalAa~~av~~ 212 (368)
..||..+.+.-.+.||.-+||..|...|+..
T Consensus 156 ~~In~~l~r~~GgKVSFThlI~kAvv~AL~~ 186 (1228)
T PRK12270 156 IVINNHLKRTRGGKVSFTHLIGYALVQALKA 186 (1228)
T ss_pred HHHHHHhhhccCCcccHHHHHHHHHHHHHHh
Confidence 3567788777788999999999999999875
No 25
>PHA03378 EBNA-3B; Provisional
Probab=87.00 E-value=3.1 Score=44.85 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhccCCcc
Q 039585 115 EKIVREFVHQKQTQSPST 132 (368)
Q Consensus 115 e~iV~~~v~~~~~~~~~~ 132 (368)
..-.+..+++++......
T Consensus 818 ~gp~k~ilrqlltggvk~ 835 (991)
T PHA03378 818 QGPTKQILRQLLTGGVKR 835 (991)
T ss_pred cCcHHHHHHHHhhccccc
Confidence 344555555544444333
No 26
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.30 E-value=6.5 Score=42.11 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=7.8
Q ss_pred hhhhcccceecc
Q 039585 263 YVALMGAHTIGF 274 (368)
Q Consensus 263 lVaLsGaHtiG~ 274 (368)
.+-+.|||-||.
T Consensus 569 a~~if~~~~~~~ 580 (585)
T PRK14950 569 AQNIFDAQIISV 580 (585)
T ss_pred HHHHcCCeEEee
Confidence 445568887775
No 27
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=86.29 E-value=8 Score=37.40 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=4.5
Q ss_pred ceeeecc
Q 039585 151 GSVLISS 157 (368)
Q Consensus 151 gSill~~ 157 (368)
|+.||..
T Consensus 138 G~alls~ 144 (297)
T PF07174_consen 138 GSALLSK 144 (297)
T ss_pred ceeeecc
Confidence 6777753
No 28
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.49 E-value=4.6 Score=43.26 Aligned_cols=9 Identities=22% Similarity=-0.141 Sum_probs=4.5
Q ss_pred HHHHHHHHh
Q 039585 115 EKIVREFVH 123 (368)
Q Consensus 115 e~iV~~~v~ 123 (368)
|.-|.+.|+
T Consensus 471 w~~~~~~~~ 479 (585)
T PRK14950 471 WKQILRDVP 479 (585)
T ss_pred HHHHHHHHh
Confidence 444555554
No 29
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=81.95 E-value=8.9 Score=40.06 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 039585 179 DVVIKIK 185 (368)
Q Consensus 179 ~~i~~iK 185 (368)
+++++|+
T Consensus 497 ~LmaqIR 503 (569)
T KOG3671|consen 497 ALMAQIR 503 (569)
T ss_pred HHHHHHH
Confidence 3455555
No 30
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=81.86 E-value=1.2 Score=46.06 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=4.9
Q ss_pred CCCceeeec
Q 039585 148 GCDGSVLIS 156 (368)
Q Consensus 148 GcDgSill~ 156 (368)
|-|||++|-
T Consensus 191 ~~~~~f~l~ 199 (465)
T PF01690_consen 191 GDDASFFLV 199 (465)
T ss_pred CCCceEEEe
Confidence 555555554
No 31
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=81.35 E-value=1.3 Score=45.85 Aligned_cols=8 Identities=25% Similarity=0.729 Sum_probs=4.5
Q ss_pred cccccccc
Q 039585 102 LRADYYKT 109 (368)
Q Consensus 102 L~~~fY~~ 109 (368)
++.+||++
T Consensus 76 i~a~w~sn 83 (465)
T PF01690_consen 76 IDAGWYSN 83 (465)
T ss_pred ecceeEec
Confidence 55555654
No 32
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=80.43 E-value=23 Score=39.76 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhccCCccchhhhhhhhhcccccCCCceee
Q 039585 114 FEKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSVL 154 (368)
Q Consensus 114 ~e~iV~~~v~~~~~~~~~~a~~llRl~FHDc~v~GcDgSil 154 (368)
.|.-|.+.|.+.-. .+.++.--...+.|-||..|
T Consensus 515 ~W~~Il~~V~~~~r-------~~~~~~l~~a~v~~~~g~~L 548 (824)
T PRK07764 515 RWPEILAAVPKRSR-------KTWAILLPEATVLGVRGDTL 548 (824)
T ss_pred HHHHHHHHHhhccH-------HHHHHhcccceeecccCCEE
Confidence 46556655555321 22233333334555666644
No 33
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=79.18 E-value=3.6 Score=48.94 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=5.3
Q ss_pred Cccchhhhhhc
Q 039585 328 GKFDNSYFRGL 338 (368)
Q Consensus 328 ~~FDN~Yy~~l 338 (368)
.+||+.+|++-
T Consensus 1981 Vsfdg~~~~qd 1991 (2039)
T PRK15319 1981 VSFDDATVKQD 1991 (2039)
T ss_pred EEECCceeeec
Confidence 34555555443
No 34
>PRK15313 autotransport protein MisL; Provisional
Probab=75.64 E-value=6.2 Score=44.26 Aligned_cols=8 Identities=13% Similarity=-0.035 Sum_probs=4.7
Q ss_pred chhhhhhh
Q 039585 133 AAGALRVF 140 (368)
Q Consensus 133 a~~llRl~ 140 (368)
...|+|..
T Consensus 677 ~s~WlR~~ 684 (955)
T PRK15313 677 TSLWMRNV 684 (955)
T ss_pred CceEEEee
Confidence 34577764
No 35
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=71.55 E-value=33 Score=32.37 Aligned_cols=6 Identities=0% Similarity=-0.269 Sum_probs=2.5
Q ss_pred hhHHHH
Q 039585 177 AFDVVI 182 (368)
Q Consensus 177 ~~~~i~ 182 (368)
|...+|
T Consensus 204 g~~~lD 209 (244)
T COG0810 204 GSPALD 209 (244)
T ss_pred CcHHHH
Confidence 344444
No 36
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=65.09 E-value=38 Score=37.34 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=12.0
Q ss_pred CCCcccccCCcCCcccc
Q 039585 215 GPRFNVSFGRKDGLVSQ 231 (368)
Q Consensus 215 GP~~~v~~GR~D~~~s~ 231 (368)
|..|.+.+-|.|+....
T Consensus 583 g~ayGFklqslD~ll~t 599 (830)
T KOG1923|consen 583 GAAYGFKLQSLDSLLDT 599 (830)
T ss_pred ccccceeccccHHHhhc
Confidence 56777888888875543
No 37
>PHA01732 proline-rich protein
Probab=60.81 E-value=13 Score=29.80 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=4.3
Q ss_pred CCceeeec
Q 039585 149 CDGSVLIS 156 (368)
Q Consensus 149 cDgSill~ 156 (368)
--+|+.|.
T Consensus 63 gTasLrIp 70 (94)
T PHA01732 63 GTASLRIP 70 (94)
T ss_pred CcceeEee
Confidence 34666653
No 38
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=57.87 E-value=46 Score=36.72 Aligned_cols=9 Identities=0% Similarity=-0.311 Sum_probs=3.9
Q ss_pred hhhhhhccc
Q 039585 137 LRVFMHDCF 145 (368)
Q Consensus 137 lRl~FHDc~ 145 (368)
+|=.|-+|.
T Consensus 406 ~ee~Fk~~~ 414 (830)
T KOG1923|consen 406 FEEQFKILK 414 (830)
T ss_pred HHHHHHhhh
Confidence 334444443
No 39
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=55.12 E-value=27 Score=34.66 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=23.1
Q ss_pred ccccccccCchHHHHHHHHHhhhhccCCccchhhhhhhhhccc
Q 039585 103 RADYYKTTCPDFEKIVREFVHQKQTQSPSTAAGALRVFMHDCF 145 (368)
Q Consensus 103 ~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRl~FHDc~ 145 (368)
...|++-+-=++...+...|-.+.-......++++|-||.-.-
T Consensus 152 ~~~f~~p~nfd~~~lLgq~~p~~ap~~~df~a~~~rQf~Pg~~ 194 (407)
T PF04625_consen 152 FFSFFNPSNFDASSLLGQALPQMAPPNPDFFAQLQRQFWPGMP 194 (407)
T ss_pred cccccCccccchhhhhhccCCCCCCCCHHHHHHHHHHhCCCCC
Confidence 3445444333334445444444333345566788899987653
No 40
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=53.16 E-value=66 Score=36.15 Aligned_cols=9 Identities=11% Similarity=0.028 Sum_probs=4.7
Q ss_pred hhhhhhhhc
Q 039585 135 GALRVFMHD 143 (368)
Q Consensus 135 ~llRl~FHD 143 (368)
..|.|.|+.
T Consensus 546 ~~L~L~f~t 554 (824)
T PRK07764 546 DTLVLGFST 554 (824)
T ss_pred CEEEEecCC
Confidence 445555554
No 41
>PTZ00411 transaldolase-like protein; Provisional
Probab=50.19 E-value=21 Score=35.70 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=41.3
Q ss_pred CcHHHHHHhhhhhHH--HhcCCCCcccccCCcCCccccccCCCCCCCC---CCCCHHHHHHHHHHCCCC----------h
Q 039585 196 VSCADILTASTRNLV--VMAGGPRFNVSFGRKDGLVSQAARIPGNLPT---NNMTMDEILKMFASKGFS----------I 260 (368)
Q Consensus 196 VScADilalAa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gl~----------~ 260 (368)
|.|-=.+.+....|+ ..+|--+|..++||.+...-........... .-..+.++...|+..|+. .
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 240 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNT 240 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCH
Confidence 444433344443333 3357788999999986542211111111111 123577788888888875 4
Q ss_pred hhhhhhcccce
Q 039585 261 QEYVALMGAHT 271 (368)
Q Consensus 261 ~dlVaLsGaHt 271 (368)
+++..|.|+|.
T Consensus 241 ~qi~~laG~D~ 251 (333)
T PTZ00411 241 GEILELAGCDK 251 (333)
T ss_pred HHHHHHHCCCE
Confidence 55566666653
No 42
>PRK12346 transaldolase A; Provisional
Probab=44.69 E-value=27 Score=34.73 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=43.0
Q ss_pred CcHHHHHHhhhhhHH--HhcCCCCcccccCCcCCccccccCCCCCCCC---CCCCHHHHHHHHHHCCCC----------h
Q 039585 196 VSCADILTASTRNLV--VMAGGPRFNVSFGRKDGLVSQAARIPGNLPT---NNMTMDEILKMFASKGFS----------I 260 (368)
Q Consensus 196 VScADilalAa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gl~----------~ 260 (368)
|+|-=.+.+....|+ ..+|--+|..++||.|...-........-+. +-..+.++.+.|++.|+. .
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~ 229 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRT 229 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCH
Confidence 555554555554444 3468888999999998643211110000111 224577788889888864 3
Q ss_pred hhhhhhcccce
Q 039585 261 QEYVALMGAHT 271 (368)
Q Consensus 261 ~dlVaLsGaHt 271 (368)
+++.+|.|+|.
T Consensus 230 ~qi~alaG~d~ 240 (316)
T PRK12346 230 EQILALAGCDR 240 (316)
T ss_pred HHHHHHhCCCE
Confidence 45555555553
No 43
>PHA01929 putative scaffolding protein
Probab=42.28 E-value=1.6e+02 Score=28.59 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhccCCccchhhhhhhhhcccccCCCcee
Q 039585 115 EKIVREFVHQKQTQSPSTAAGALRVFMHDCFVDGCDGSV 153 (368)
Q Consensus 115 e~iV~~~v~~~~~~~~~~a~~llRl~FHDc~v~GcDgSi 153 (368)
+.+| ..+...|..|+.+++++= +-+.| -|||++=
T Consensus 105 ~e~v-~tlag~~~gDp~laasv~---~L~~~-sg~~dlD 138 (306)
T PHA01929 105 GEIV-GTLAGNLEGDPQLAPSVS---YLEAF-SGLDKLD 138 (306)
T ss_pred HHHH-HHhhccccCCcccchHHH---HHHHH-hcCcchH
Confidence 4455 688889999999999762 23443 3677763
No 44
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.60 E-value=1.9e+02 Score=31.45 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=5.3
Q ss_pred hhhhhhcc
Q 039585 137 LRVFMHDC 144 (368)
Q Consensus 137 lRl~FHDc 144 (368)
||+.||+.
T Consensus 505 l~~~w~~~ 512 (620)
T PRK14954 505 LRMEWNQF 512 (620)
T ss_pred HHHHHHHH
Confidence 66777664
No 45
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=39.07 E-value=1e+02 Score=31.41 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=7.9
Q ss_pred HHHHHHHHhcccccCC
Q 039585 7 SVIFLAFISIPYSIAN 22 (368)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (368)
++++.+.+++.|++..
T Consensus 37 ~~~~~~~~~~~w~~~~ 52 (376)
T PRK13855 37 GLVLALSLSLIWLGGR 52 (376)
T ss_pred HHHHHHHHHHHHhccC
Confidence 3334444555566554
No 46
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=38.81 E-value=33 Score=32.83 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=34.6
Q ss_pred CcHHHHHHhhhhhHH--HhcCCCCcccccCCcCCccccccCCCCCCCCCCC---CHHHHHHHHHHCCCCh
Q 039585 196 VSCADILTASTRNLV--VMAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNM---TMDEILKMFASKGFSI 260 (368)
Q Consensus 196 VScADilalAa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~---~~~~l~~~F~~~Gl~~ 260 (368)
|++-=.+.+....|+ ..+|.-++..++||.|...-......+.=+.... .+.++.+.|+..|.+.
T Consensus 140 I~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 140 ISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 444433444444333 3467788899999999765432222111111112 2446667777777654
No 47
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=35.99 E-value=2.1e+02 Score=25.71 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=3.8
Q ss_pred ccccccc
Q 039585 102 LRADYYK 108 (368)
Q Consensus 102 L~~~fY~ 108 (368)
++..||-
T Consensus 94 l~R~~~V 100 (163)
T PF06679_consen 94 LKRALYV 100 (163)
T ss_pred hhhhHHH
Confidence 5555554
No 48
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=35.16 E-value=1.4e+02 Score=30.35 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.6
Q ss_pred CCCCCCHHHHH
Q 039585 240 PTNNMTMDEIL 250 (368)
Q Consensus 240 P~p~~~~~~l~ 250 (368)
|-+.-++..+.
T Consensus 284 p~p~pdlkNVK 294 (448)
T KOG2418|consen 284 PKPNPDLKNVK 294 (448)
T ss_pred CCCCchhhhhh
Confidence 44444444433
No 49
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=34.13 E-value=1.7e+02 Score=29.79 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=2.8
Q ss_pred Cccchh
Q 039585 328 GKFDNS 333 (368)
Q Consensus 328 ~~FDN~ 333 (368)
..+||.
T Consensus 362 GSldNa 367 (448)
T KOG2418|consen 362 GSLDNA 367 (448)
T ss_pred cccccc
Confidence 345553
No 50
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=33.78 E-value=34 Score=33.92 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=36.9
Q ss_pred CcHHHHHHhhhhhHHH--hcCCCCcccccCCcCCccccccCCCCCCC----CCCCCHHHHHHHHHHCCCChh
Q 039585 196 VSCADILTASTRNLVV--MAGGPRFNVSFGRKDGLVSQAARIPGNLP----TNNMTMDEILKMFASKGFSIQ 261 (368)
Q Consensus 196 VScADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~ 261 (368)
|+|-=.+.+....|+. .+|--++..++||.|-..-...... ..+ ++-..+.++.+.|++.|+..+
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~-~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK-AYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccc-cCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 5555444444444433 3577889999999875422111100 011 122457788889999998653
No 51
>PRK05269 transaldolase B; Provisional
Probab=32.67 E-value=48 Score=32.91 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=36.5
Q ss_pred CcHHHHHHhhhhhHH--HhcCCCCcccccCCcCCccccccCCCCC---CCCCCCCHHHHHHHHHHCCCChh
Q 039585 196 VSCADILTASTRNLV--VMAGGPRFNVSFGRKDGLVSQAARIPGN---LPTNNMTMDEILKMFASKGFSIQ 261 (368)
Q Consensus 196 VScADilalAa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~---lP~p~~~~~~l~~~F~~~Gl~~~ 261 (368)
|+|-=.+.+....|+ ..+|--++..+.||.|...-...+.... -=..-..+.++.+.|++.|+..+
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 444433344333333 3468888999999998542211100000 01123457888899999998654
No 52
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=32.56 E-value=3.6e+02 Score=27.59 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=10.7
Q ss_pred HHHHHHhhhhccCCccchhh
Q 039585 117 IVREFVHQKQTQSPSTAAGA 136 (368)
Q Consensus 117 iV~~~v~~~~~~~~~~a~~l 136 (368)
-.|..+.+.+++....++.|
T Consensus 235 RmR~RIA~RLKdsQNt~A~L 254 (457)
T KOG0559|consen 235 RMRLRIAERLKDSQNTAAML 254 (457)
T ss_pred HHHHHHHHHHHhhhhhhhhh
Confidence 34555555555555555544
No 53
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=30.04 E-value=2.8e+02 Score=32.22 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhCCCCCcHHH
Q 039585 180 VVIKIKNALEDACPGVVSCAD 200 (368)
Q Consensus 180 ~i~~iK~~le~~cp~~VScAD 200 (368)
+...++..++++=-|..+..|
T Consensus 242 f~~ay~dLV~KAR~gKLt~eD 262 (1228)
T PRK12270 242 FWAAYEDIVRRARDGKLTADD 262 (1228)
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 333444444443334455444
No 54
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.77 E-value=1.9e+02 Score=27.25 Aligned_cols=11 Identities=18% Similarity=0.130 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q 039585 180 VVIKIKNALED 190 (368)
Q Consensus 180 ~i~~iK~~le~ 190 (368)
-.+..+.+||+
T Consensus 204 ~a~~~~~el~q 214 (226)
T COG3147 204 KAEGLLGELEQ 214 (226)
T ss_pred HHHHHHHHHHH
Confidence 34444555554
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.17 E-value=4.1e+02 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhhhhccCCccchhhhhhhhhc
Q 039585 113 DFEKIVREFVHQKQTQSPSTAAGALRVFMHD 143 (368)
Q Consensus 113 ~~e~iV~~~v~~~~~~~~~~a~~llRl~FHD 143 (368)
..|..|.+.|..-|.+ ......||.+|..
T Consensus 155 ~~e~~I~~i~eMGf~R--~qV~~ALRAafNN 183 (378)
T TIGR00601 155 ERETTIEEIMEMGYER--EEVERALRAAFNN 183 (378)
T ss_pred HHHHHHHHHHHhCCCH--HHHHHHHHHHhCC
Confidence 4566776666665533 3455567888764
No 56
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=26.56 E-value=2e+02 Score=29.28 Aligned_cols=7 Identities=14% Similarity=0.544 Sum_probs=3.9
Q ss_pred CChhhhh
Q 039585 258 FSIQEYV 264 (368)
Q Consensus 258 l~~~dlV 264 (368)
|+.+||-
T Consensus 363 laiedM~ 369 (457)
T KOG0559|consen 363 LAIEDMA 369 (457)
T ss_pred eeeeecc
Confidence 5556653
No 57
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=26.39 E-value=87 Score=31.14 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=35.4
Q ss_pred CcHHHHHHhhhhhHH--HhcCCCCcccccCCcCCccccccCCCC---CCCCCCCCHHHHHHHHHHCCCCh
Q 039585 196 VSCADILTASTRNLV--VMAGGPRFNVSFGRKDGLVSQAARIPG---NLPTNNMTMDEILKMFASKGFSI 260 (368)
Q Consensus 196 VScADilalAa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~Gl~~ 260 (368)
|+|-=.+.+....|+ ..+|--+|..++||.|-..-...+... ..=++-..+.++.+.|++.|+..
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T 218 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPT 218 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCc
Confidence 444333334333333 346888899999998763221110000 01112345777888898988764
No 58
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=25.75 E-value=2.5e+02 Score=28.69 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHHhcccccCC
Q 039585 1 MAVLPISVIFLAFISIPYSIAN 22 (368)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (368)
|+++++++|++++|-....-..
T Consensus 34 ~v~~~~~~~~~~~~w~~~~~~~ 55 (376)
T PRK13855 34 IVAGLVLALSLSLIWLGGRSKK 55 (376)
T ss_pred hHHHHHHHHHHHHHHhccCCCc
Confidence 3566777777777766664444
No 59
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=25.48 E-value=1e+02 Score=31.56 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=36.4
Q ss_pred CcHHHHHHhhhhhHHH--hcCCCCcccccCCcCCccccccCCCCCCCCC----CCCHHHHHHHHHHCCCCh
Q 039585 196 VSCADILTASTRNLVV--MAGGPRFNVSFGRKDGLVSQAARIPGNLPTN----NMTMDEILKMFASKGFSI 260 (368)
Q Consensus 196 VScADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~~ 260 (368)
|.|-=.+.+....|+. .+|--+|..+.||.|...-...+. ..++.. -..+.++.+.|+..|+..
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHHhcCCCc
Confidence 5544444444444433 368888999999987633221111 112322 234777888888888643
No 60
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=25.46 E-value=67 Score=29.81 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=26.9
Q ss_pred hcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCC
Q 039585 212 MAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFS 259 (368)
Q Consensus 212 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 259 (368)
.+|.-++..++||.|...- ++..-+.++.+.+++.|+.
T Consensus 120 ~AGA~yvsP~vgR~~~~g~----------dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 120 KAGATYVSPFVGRIDDLGG----------DGMELIREIRTIFDNYGFD 157 (211)
T ss_pred HcCCCEEEEecChHhhcCC----------CHHHHHHHHHHHHHHcCCC
Confidence 3566778889999876421 2334567888899888866
No 61
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=24.51 E-value=24 Score=28.99 Aligned_cols=14 Identities=50% Similarity=1.348 Sum_probs=9.3
Q ss_pred hhhcccccCCCceee
Q 039585 140 FMHDCFVDGCDGSVL 154 (368)
Q Consensus 140 ~FHDc~v~GcDgSil 154 (368)
.+|+|| |||.|+++
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 479998 79999987
No 62
>PRK01362 putative translaldolase; Provisional
Probab=23.11 E-value=39 Score=31.59 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhHHH--hcCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHH
Q 039585 176 DAFDVVIKIKNALEDACPGVVSCADILTASTRNLVV--MAGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMF 253 (368)
Q Consensus 176 ~~~~~i~~iK~~le~~cp~~VScADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 253 (368)
.|++++..++++ | |++--...+....|+. .+|--++..++||.|-..- ++..-+.++.+.|
T Consensus 89 ~G~~a~~~L~~~------G-i~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~----------dg~~~i~~~~~~~ 151 (214)
T PRK01362 89 EGLKAVKALSKE------G-IKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGT----------DGMELIEDIREIY 151 (214)
T ss_pred HHHHHHHHHHHC------C-CceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCC----------CHHHHHHHHHHHH
Confidence 566666655443 1 3222222333333322 2466678899999976421 1344577788888
Q ss_pred HHCCCChh
Q 039585 254 ASKGFSIQ 261 (368)
Q Consensus 254 ~~~Gl~~~ 261 (368)
+..|++.+
T Consensus 152 ~~~~~~tk 159 (214)
T PRK01362 152 DNYGFDTE 159 (214)
T ss_pred HHcCCCcE
Confidence 88886654
No 63
>PHA03269 envelope glycoprotein C; Provisional
Probab=23.11 E-value=2.3e+02 Score=30.06 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=10.8
Q ss_pred hcccceeccccccc
Q 039585 266 LMGAHTIGFAHCKE 279 (368)
Q Consensus 266 LsGaHtiG~~hc~~ 279 (368)
.-|||-+..+.|.-
T Consensus 443 FedG~AVCtA~CVP 456 (566)
T PHA03269 443 IIDGHIVCLAKCVP 456 (566)
T ss_pred EeCCEEEEeccccc
Confidence 34888888888874
No 64
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.05 E-value=66 Score=25.56 Aligned_cols=13 Identities=15% Similarity=0.145 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHhc
Q 039585 4 LPISVIFLAFISI 16 (368)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (368)
+.++.++++.+.+
T Consensus 22 fvFL~lLI~~i~~ 34 (82)
T PRK02919 22 LAFLFLLIFAIRG 34 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 65
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=22.19 E-value=34 Score=31.98 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=27.7
Q ss_pred cCCCCcccccCCcCCccccccCCCCCCCCCCCCHHHHHHHHHHCCCChh
Q 039585 213 AGGPRFNVSFGRKDGLVSQAARIPGNLPTNNMTMDEILKMFASKGFSIQ 261 (368)
Q Consensus 213 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 261 (368)
+|.-++..++||.|...- ++..-+.++.+.|+..|++.+
T Consensus 121 aGa~yispyvgRi~d~g~----------dg~~~v~~~~~~~~~~~~~tk 159 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGG----------DGMKLIEEVKTIFENHAPDTE 159 (213)
T ss_pred cCCCEEEeecchHHHcCC----------CHHHHHHHHHHHHHHcCCCCE
Confidence 466678899999886421 124457778888888888765
No 66
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=21.88 E-value=2.1e+02 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=13.1
Q ss_pred HHHHHHhhhhccCCccchhhhhhhhhcccc
Q 039585 117 IVREFVHQKQTQSPSTAAGALRVFMHDCFV 146 (368)
Q Consensus 117 iV~~~v~~~~~~~~~~a~~llRl~FHDc~v 146 (368)
..+..++..-.+-...+ +.||.|+.
T Consensus 87 ~Ar~~~r~kAa~~gaN~-----Vvl~~C~~ 111 (133)
T PRK10781 87 TARKRMQINASKMKANA-----VLLHSCEI 111 (133)
T ss_pred HHHHHHHHHHHHcCCCE-----EEEEEeec
Confidence 34445554444332222 57899975
No 67
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=61 Score=28.15 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHCCCChhhh-hhhcccceecccc
Q 039585 244 MTMDEILKMFASKGFSIQEY-VALMGAHTIGFAH 276 (368)
Q Consensus 244 ~~~~~l~~~F~~~Gl~~~dl-VaLsGaHtiG~~h 276 (368)
+++.+.+-.|+++||+..++ |.|--+|.||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 34666677899999999998 5666999999886
Done!