BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039586
         (592 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptide 4 OS=Mus musculus
           GN=Gtf3c4 PE=1 SV=2
          Length = 817

 Score = 33.9 bits (76), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 17/96 (17%)

Query: 339 SSDPYLHITFT----FLPKGAARPLSFGFRISSWTNTNGAKATLNGQDLPLPSTARTSDD 394
           S DP +  TF     F P+G A P   GF+ +SW+   G  A  NG+ L     A T D+
Sbjct: 132 SKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPM-GCDA--NGRCL---LAALTMDN 185

Query: 395 KLTIQLPL-------ILRIEPIDADRPFTTLVTFSK 423
           +LT+Q+ L       ++ +  I  DR + T    SK
Sbjct: 186 RLTVQVNLNRLQWVQLVDLTEIYGDRLYETSYRLSK 221


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,475,694
Number of Sequences: 539616
Number of extensions: 9500505
Number of successful extensions: 18194
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18193
Number of HSP's gapped (non-prelim): 3
length of query: 592
length of database: 191,569,459
effective HSP length: 123
effective length of query: 469
effective length of database: 125,196,691
effective search space: 58717248079
effective search space used: 58717248079
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)