Query 039586
Match_columns 592
No_of_seqs 217 out of 755
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 2.1E-91 4.5E-96 740.7 30.0 393 20-436 8-504 (589)
2 PF07944 DUF1680: Putative gly 100.0 6.6E-90 1.4E-94 763.5 36.7 387 28-433 1-520 (520)
3 PF03663 Glyco_hydro_76: Glyco 98.0 1.3E-05 2.8E-10 86.6 8.5 160 109-269 37-254 (370)
4 PF05270 AbfB: Alpha-L-arabino 97.9 1.9E-05 4.1E-10 74.5 6.5 70 475-550 2-75 (142)
5 cd00249 AGE AGE domain; N-acyl 97.8 0.00025 5.5E-09 75.7 14.4 186 75-264 55-330 (384)
6 cd00249 AGE AGE domain; N-acyl 97.8 0.00031 6.7E-09 75.0 13.4 149 114-264 58-267 (384)
7 PF07944 DUF1680: Putative gly 97.7 0.00026 5.7E-09 79.8 12.9 154 74-231 126-334 (520)
8 PF03663 Glyco_hydro_76: Glyco 97.7 0.00029 6.2E-09 76.2 12.5 156 75-234 38-256 (370)
9 COG1331 Highly conserved prote 97.6 0.00082 1.8E-08 76.7 14.5 111 154-265 416-564 (667)
10 cd04791 LanC_SerThrkinase Lant 97.6 0.00063 1.4E-08 70.9 12.6 148 115-265 89-270 (321)
11 PF05270 AbfB: Alpha-L-arabino 97.4 0.00033 7.1E-09 66.2 7.0 75 449-537 37-115 (142)
12 PF06662 C5-epim_C: D-glucuron 97.3 0.00065 1.4E-08 67.1 7.4 108 155-263 36-186 (189)
13 COG4225 Predicted unsaturated 96.7 0.0055 1.2E-07 65.0 8.6 136 121-268 11-167 (357)
14 PF07470 Glyco_hydro_88: Glyco 96.3 0.0077 1.7E-07 63.9 6.5 103 154-264 30-152 (336)
15 cd04791 LanC_SerThrkinase Lant 96.2 0.022 4.7E-07 59.4 9.5 115 114-234 144-276 (321)
16 COG1331 Highly conserved prote 95.9 0.037 8.1E-07 63.6 10.0 117 113-231 415-567 (667)
17 COG3533 Uncharacterized protei 95.8 0.014 3.1E-07 64.6 5.7 160 69-243 123-313 (589)
18 COG4225 Predicted unsaturated 95.7 0.037 8E-07 58.9 8.4 112 115-231 42-168 (357)
19 PF06662 C5-epim_C: D-glucuron 95.7 0.038 8.2E-07 54.7 7.9 111 61-178 24-188 (189)
20 PF07470 Glyco_hydro_88: Glyco 95.6 0.053 1.1E-06 57.5 9.3 119 114-233 30-158 (336)
21 PF07221 GlcNAc_2-epim: N-acyl 95.6 0.017 3.8E-07 61.3 5.4 150 114-265 86-304 (346)
22 cd04792 LanM-like LanM-like pr 95.4 0.15 3.3E-06 60.6 13.1 143 119-265 501-672 (825)
23 cd04792 LanM-like LanM-like pr 94.7 0.27 5.8E-06 58.5 12.4 149 117-268 549-734 (825)
24 PF07221 GlcNAc_2-epim: N-acyl 93.8 0.3 6.5E-06 51.9 9.3 155 76-233 84-309 (346)
25 PF01532 Glyco_hydro_47: Glyco 92.1 0.57 1.2E-05 52.3 8.8 120 114-233 82-245 (452)
26 cd04434 LanC_like LanC-like pr 91.9 2.8 6E-05 43.4 13.3 152 116-269 57-252 (343)
27 cd04434 LanC_like LanC-like pr 91.6 1.5 3.3E-05 45.3 10.9 147 117-265 10-188 (343)
28 PTZ00470 glycoside hydrolase f 90.8 1.6 3.5E-05 49.7 10.8 66 113-178 159-251 (522)
29 cd04794 euk_LANCL eukaryotic L 89.0 3.3 7.1E-05 44.1 11.0 115 153-269 169-303 (343)
30 PF15095 IL33: Interleukin 33; 89.0 4.3 9.3E-05 41.2 10.8 110 417-537 133-245 (268)
31 KOG2244 Highly conserved prote 86.8 1.7 3.6E-05 49.2 7.1 66 114-179 582-673 (786)
32 cd04794 euk_LANCL eukaryotic L 85.9 4.3 9.4E-05 43.2 9.6 117 114-234 170-305 (343)
33 PTZ00470 glycoside hydrolase f 85.1 3.3 7.1E-05 47.3 8.6 110 157-268 163-319 (522)
34 COG4403 LcnDR2 Lantibiotic mod 83.7 4.5 9.7E-05 48.3 9.0 99 75-177 698-821 (963)
35 cd04793 LanC LanC is the cycla 83.0 9.6 0.00021 41.1 10.8 115 153-269 176-326 (382)
36 PF05147 LANC_like: Lanthionin 82.7 2.4 5.1E-05 44.4 5.9 150 118-269 115-307 (355)
37 COG2942 N-acyl-D-glucosamine 2 82.2 6.5 0.00014 43.1 9.0 103 74-179 175-333 (388)
38 COG4403 LcnDR2 Lantibiotic mod 80.6 5.3 0.00011 47.7 8.1 110 117-228 704-822 (963)
39 COG2942 N-acyl-D-glucosamine 2 78.9 32 0.00068 37.9 12.8 122 109-233 176-337 (388)
40 PF01532 Glyco_hydro_47: Glyco 77.5 2.8 6E-05 46.9 4.5 110 157-266 85-241 (452)
41 PF00759 Glyco_hydro_9: Glycos 77.3 13 0.00028 40.9 9.7 108 157-270 223-360 (444)
42 PF06917 Pectate_lyase_2: Peri 71.7 7.8 0.00017 43.7 6.0 80 156-235 391-473 (557)
43 PF06917 Pectate_lyase_2: Peri 71.3 9.3 0.0002 43.1 6.5 64 114-177 389-465 (557)
44 PF00759 Glyco_hydro_9: Glycos 69.6 41 0.00089 37.0 11.3 126 114-240 220-371 (444)
45 cd04793 LanC LanC is the cycla 67.6 12 0.00027 40.3 6.5 79 153-233 248-327 (382)
46 KOG2787 Lanthionine synthetase 67.0 9.7 0.00021 40.9 5.3 60 118-179 289-356 (403)
47 KOG2787 Lanthionine synthetase 60.4 18 0.0004 38.8 5.9 79 151-234 282-361 (403)
48 TIGR03000 plancto_dom_1 Planct 57.5 20 0.00044 30.6 4.5 23 359-386 3-25 (75)
49 TIGR02474 pec_lyase pectate ly 54.1 72 0.0016 33.9 9.0 106 157-265 52-212 (290)
50 PF05426 Alginate_lyase: Algin 52.8 36 0.00079 34.6 6.6 43 198-240 165-208 (272)
51 PF09492 Pec_lyase: Pectic aci 49.9 22 0.00047 37.8 4.4 39 204-243 44-82 (289)
52 PF00340 IL1: Interleukin-1 / 47.1 48 0.001 30.5 5.8 29 522-552 80-108 (120)
53 PF09492 Pec_lyase: Pectic aci 45.9 48 0.001 35.2 6.3 107 157-264 47-206 (289)
54 KOG2431 1, 2-alpha-mannosidase 43.8 29 0.00062 38.6 4.3 68 112-179 178-271 (546)
55 PF05147 LANC_like: Lanthionin 41.6 40 0.00087 35.2 5.0 115 116-234 174-309 (355)
56 PLN02175 endoglucanase 40.6 58 0.0012 37.1 6.2 65 157-234 239-310 (484)
57 KOG2244 Highly conserved prote 35.0 83 0.0018 36.3 6.2 73 157-233 585-677 (786)
58 PLN02909 Endoglucanase 34.9 4.3E+02 0.0094 30.2 12.0 123 112-240 240-397 (486)
59 COG1188 Ribosome-associated he 34.2 75 0.0016 28.6 4.7 37 373-410 33-69 (100)
60 PHA02651 IL-1 receptor antagon 33.9 46 0.00099 32.5 3.6 27 522-550 116-143 (165)
61 PLN02345 endoglucanase 33.9 77 0.0017 35.9 5.9 20 156-175 209-228 (469)
62 PLN02613 endoglucanase 32.1 84 0.0018 35.9 5.8 110 116-233 179-307 (498)
63 PLN00119 endoglucanase 31.0 91 0.002 35.6 5.9 21 157-177 245-265 (489)
64 PHA02811 putative host range p 31.0 51 0.0011 32.8 3.4 47 338-386 24-74 (197)
65 PRK05659 sulfur carrier protei 30.7 61 0.0013 25.9 3.3 29 373-401 31-62 (66)
66 PLN02266 endoglucanase 30.7 1.2E+02 0.0026 34.8 6.8 21 157-177 260-280 (510)
67 TIGR02474 pec_lyase pectate ly 30.6 80 0.0017 33.6 5.0 39 204-243 49-87 (290)
68 cd00100 IL1 Interleukin-1 homo 29.8 70 0.0015 30.6 4.0 27 522-550 104-130 (144)
69 PLN02171 endoglucanase 28.9 98 0.0021 36.4 5.8 51 113-175 180-263 (629)
70 COG1339 Transcriptional regula 28.8 35 0.00076 34.3 1.9 65 337-407 121-199 (214)
71 PF03287 Pox_C7_F8A: Poxvirus 28.2 76 0.0016 30.5 3.9 46 338-385 24-73 (149)
72 PLN02308 endoglucanase 28.2 1.1E+02 0.0023 35.0 5.8 20 157-176 242-261 (492)
73 PF13464 DUF4115: Domain of un 27.7 3.5E+02 0.0076 22.3 9.3 41 356-401 37-77 (77)
74 PF06229 FRG1: FRG1-like famil 27.6 1.1E+02 0.0025 30.4 5.3 50 484-539 47-96 (191)
75 PRK05863 sulfur carrier protei 26.7 79 0.0017 25.6 3.3 28 373-400 31-60 (65)
76 KOG2429 Glycosyl hydrolase, fa 26.2 39 0.00085 38.7 1.9 27 153-179 375-401 (622)
77 TIGR02988 YaaA_near_RecF S4 do 26.2 90 0.0019 24.6 3.5 26 373-398 33-58 (59)
78 PRK07440 hypothetical protein; 26.0 81 0.0017 26.1 3.3 27 373-399 35-64 (70)
79 PLN03009 cellulase 25.8 5.4E+02 0.012 29.5 10.9 157 81-240 183-402 (495)
80 KOG2204 Mannosyl-oligosacchari 25.8 1.6E+02 0.0035 34.1 6.5 111 154-269 222-365 (625)
81 smart00125 IL1 Interleukin-1 h 25.4 74 0.0016 30.5 3.3 27 522-550 107-133 (147)
82 KOG2430 Glycosyl hydrolase, fa 24.5 2.1E+02 0.0045 31.3 6.7 111 61-179 237-389 (587)
83 PLN02266 endoglucanase 23.5 1.3E+02 0.0028 34.6 5.4 52 218-270 215-285 (510)
84 PLN02345 endoglucanase 21.7 1.5E+02 0.0032 33.7 5.4 45 218-262 167-228 (469)
85 PLN02340 endoglucanase 21.0 1.4E+03 0.031 27.0 13.6 160 81-240 186-406 (614)
86 PRK08053 sulfur carrier protei 20.6 1.2E+02 0.0027 24.4 3.4 29 373-401 31-62 (66)
87 cd01763 Sumo Small ubiquitin-r 20.6 5.3E+02 0.011 21.9 7.7 30 373-402 51-84 (87)
88 smart00363 S4 S4 RNA-binding d 20.6 1.1E+02 0.0023 22.6 2.8 27 374-400 26-52 (60)
89 PRK11507 ribosome-associated p 20.3 1.2E+02 0.0026 25.6 3.3 26 374-399 37-62 (70)
90 PLN02909 Endoglucanase 20.3 1.5E+02 0.0034 33.7 5.2 59 205-263 186-264 (486)
91 PLN00119 endoglucanase 20.1 1.6E+02 0.0034 33.7 5.1 60 205-264 183-265 (489)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.1e-91 Score=740.74 Aligned_cols=393 Identities=22% Similarity=0.341 Sum_probs=349.7
Q ss_pred CcccccCCCEEECCCccchHHHHhhhhH---------HHhcCCCCCCCCCCCccCCCcccccchhhHHHHHHHHHHhccC
Q 039586 20 FLKEVSLHDVLLGLDSMHWRAQQMNMEF---------PENSQFANAGKPYGGWEDPICEFRGHFVGHYLGTMALKWATTH 90 (592)
Q Consensus 20 ~l~~~~l~~V~l~~~~f~~~~q~~~~~y---------R~~AGl~~~g~~~gGWe~~d~~lrGh~vgkwLsAaA~~~a~t~ 90 (592)
.++++++++|.+. +||+.++++...+ -.+++++.....++||+.+ .++||++||||||+|++++.++
T Consensus 8 ~~r~v~v~~~~~~--~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q--~f~dsdlgkwlea~A~~l~~~~ 83 (589)
T COG3533 8 VLRPVTVKDVIFG--QFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQ--MFWDSDLGKWLEAAAYSLANKG 83 (589)
T ss_pred ccccCCcCchhcc--ccccccceeEEecCHHHHHhHhhhccCCCccCcccccceee--eeccccHHHHHHHHHHHHhcCC
Confidence 3888999999886 6988887776654 3455677655578999954 5899999999999999999999
Q ss_pred CchHHHHhhh---------------------------hc------CCcccccchHHHHHHHHHHHHHcCChhHHHHHHHh
Q 039586 91 NDSLKGKCRL---------------------------WC------PLCPNARIKWEILAGLLDEYAYADKAEALKITTWM 137 (592)
Q Consensus 91 D~~L~~k~d~---------------------------W~------p~Y~~~~~gHki~aGLld~Y~~tG~~kaL~va~r~ 137 (592)
|++|++++|+ |. ++| |+ |||++|++|+|++||++++|+|++|+
T Consensus 84 dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY---~a-ghLieg~va~~qaTGkr~lldV~~rl 159 (589)
T COG3533 84 DPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELY---CA-GHLIEGGVAAHQATGKRRLLDVVCRL 159 (589)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHH---Hh-HHHHhhhhHHHHhhCcchHHHHHHHH
Confidence 9999999999 54 468 99 77889999999999999999999999
Q ss_pred -------hcccccccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhhhcCCCCCCCcccchhhHHhHHHH
Q 039586 138 -------YIVTRHWDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQM 210 (592)
Q Consensus 138 -------~~~~~~~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~ 210 (592)
|+.+.-+..+.+||++|++||++||++|||+|||+||++|++.+..+|+++..|.+.++||||+||+++|+|+
T Consensus 160 ADhi~tvfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~iyl~~G~A~ 239 (589)
T COG3533 160 ADHIATVFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQIYLYIGAAD 239 (589)
T ss_pred HHhhhhhcCccccccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHHHHHhhhHHH
Confidence 2222224456799999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhccCeEeecHHH-----------------------------HHHHHHhcCCCCchHHHH
Q 039586 211 RYEVTGDQLQTEILKFFMDIVNASHTHASGGTS-----------------------------VSRNLFRWTKEMAYADYY 261 (592)
Q Consensus 211 ~y~~TGD~~yl~A~~~~w~~V~~~~~y~TGG~g-----------------------------ls~~Lf~~tgD~~YaD~~ 261 (592)
+|+++||+.+++++++||++|+++|||||||+| |++|||.+++|++|||+|
T Consensus 240 l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~~yaDvm 319 (589)
T COG3533 240 LAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDSQYADVM 319 (589)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 999999999999999999999999999999997 789999999999999999
Q ss_pred HHHHhhcC-------CCCCCC-----------CCCCCCcccCCCCccchhhhhccceeeeecCCCCcEEEEEeeCcEEEe
Q 039586 262 ERALTNAS-------GSTKDW-----------GTPFDSLWGCYGTGIQSFAKLGDSIYFEEEGLYPGLYIIQYISSSLDW 323 (592)
Q Consensus 262 EraLYN~v-------G~~~~~-----------~~~~~~f~CC~gng~r~~akl~~~iY~~~~~~~~~LyVnLYipS~~~~ 323 (592)
||+|||++ |..++| +.+|++||||+||++|+++|+++|||...+ ++||||||+.|++++
T Consensus 320 ErALYN~iL~g~slDg~~ffY~nPle~~grh~r~~w~~c~CCppn~ar~~as~g~yiY~~~~---d~lyvnLy~~S~~~l 396 (589)
T COG3533 320 ERALYNHILAGQSLDGGMFFYFNPLESGGRHSRQKWFSCWCCPPNGARSVASIGDYIYTRAD---DALYVNLYIASTADL 396 (589)
T ss_pred HHHHHhccccccCCCCCeeEEecchhhCCCccccccccCCCCCCcHhhhhhhccceEEccCC---CEEEEEEeecccccc
Confidence 99999999 322222 567899999999999999999999999987 699999999999999
Q ss_pred ecCcEEEEEEeCCCCCCCCceEEEEEEEeCCCCcceEEEEEeccCCCCCCcEEEECCeecCCCCC--------CCCCCCE
Q 039586 324 KSGHIVLNQKVDPVVSSDPYLHITFTFLPKGAARPLSFGFRISSWTNTNGAKATLNGQDLPLPST--------ARTSDDK 395 (592)
Q Consensus 324 ~~~~V~i~q~T~YP~~~~~~~~V~i~V~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~v~~~~~--------~Wk~GD~ 395 (592)
+..+|.|+|+|+|||++ +|+|+|... .+.+|+|+||||+||. .++++|||+.+..... +|++||+
T Consensus 397 ~~~~v~irqet~yPw~g----~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~~~~~~~GYa~i~R~Wq~GDr 469 (589)
T COG3533 397 PGDDVQIRQETNYPWSG----QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEVIQTRGKGYARISREWQAGDR 469 (589)
T ss_pred cccceEEEeccCCCCcC----eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcchhhccCCCeeeeeehhcCCCe
Confidence 97779999999999999 999999986 8999999999999999 8999999976654431 9999999
Q ss_pred EEEEecceeEEEECCCCCCcccEEEEEeeCCCCcEEEEeCC
Q 039586 396 LTIQLPLILRIEPIDADRPFTTLVTFSKVSRNSTFVLTIYP 436 (592)
Q Consensus 396 I~L~Lpm~lr~~~~~d~~~~~~~Va~~r~~~~GPlVy~le~ 436 (592)
|+|.|||++|+...|+++.+.| |++| ||||||+|.
T Consensus 470 V~L~LpM~vr~y~nP~~r~~~G--Ai~r----GPlVyc~e~ 504 (589)
T COG3533 470 VELMLPMPVRIYANPDVRHDVG--AIMR----GPLVYCAEA 504 (589)
T ss_pred EEEeecceeEeecCCcchhhhh--hhhc----CCeEEEEec
Confidence 9999999999666666675544 8999 999999986
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=6.6e-90 Score=763.54 Aligned_cols=387 Identities=34% Similarity=0.556 Sum_probs=351.8
Q ss_pred CEEECCCccchHHHHhhhhH-------------HHhcCCCCCCCCCCCcc--CCCcccccchhhHHHHHHHHHHhccCCc
Q 039586 28 DVLLGLDSMHWRAQQMNMEF-------------PENSQFANAGKPYGGWE--DPICEFRGHFVGHYLGTMALKWATTHND 92 (592)
Q Consensus 28 ~V~l~~~~f~~~~q~~~~~y-------------R~~AGl~~~g~~~gGWe--~~d~~lrGh~vgkwLsAaA~~~a~t~D~ 92 (592)
+|+|+| +||+++|+++++| |..||+++++.+++||| ++++.|+||++||||||+|++++.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699995 8999999999987 89999999888999999 8899999999999999999999999999
Q ss_pred hHHHHhhh-----------------------------hcC----CcccccchHHHHHHHHHHHHHcCChhHHHHHHHh--
Q 039586 93 SLKGKCRL-----------------------------WCP----LCPNARIKWEILAGLLDEYAYADKAEALKITTWM-- 137 (592)
Q Consensus 93 ~L~~k~d~-----------------------------W~p----~Y~~~~~gHki~aGLld~Y~~tG~~kaL~va~r~-- 137 (592)
+|++|+|+ |+| +| |+ |||++||+|+|++|||+++|++++|+
T Consensus 80 ~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y---~~-~~ll~gl~~~y~~tG~~~~L~v~~k~ad 155 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELY---CL-GKLLEGLIDYYEATGNERALDVATKLAD 155 (520)
T ss_pred HHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCcccee---hH-hHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 99999999 888 99 99 99999999999999999999999999
Q ss_pred hc--------ccccccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccch--hhhcCCCCCCCcccchhhH---
Q 039586 138 YI--------VTRHWDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGL--LAVQADDISGFCAKTKIPI--- 204 (592)
Q Consensus 138 ~~--------~~~~~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~--l~~~~D~l~~~HAn~~ip~--- 204 (592)
+. .+.+..+...|++||+++|++||++|||++||+||++|++.+++++ +..++|.+++.|+|++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~vr 235 (520)
T PF07944_consen 156 WVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAVR 235 (520)
T ss_pred HHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCccccceeeEEEE
Confidence 22 2223345678999999999999999999999999999999999999 8889999887666655554
Q ss_pred ----HhHHHHHHHHhCCHHHHHHHHHHHHHHhccCeEeecHHH-------------------------------HHHHHH
Q 039586 205 ----VIGSQMRYEVTGDQLQTEILKFFMDIVNASHTHASGGTS-------------------------------VSRNLF 249 (592)
Q Consensus 205 ----~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~y~TGG~g-------------------------------ls~~Lf 249 (592)
+.|++++|++|||++|++|++++|++|+++|||+|||+| ++++||
T Consensus 236 ~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~ 315 (520)
T PF07944_consen 236 AMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLF 315 (520)
T ss_pred hhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHH
Confidence 559999999999999999999999999999999999999 789999
Q ss_pred hcCCCCchHHHHHHHHhhcC-------C------------CCC----CCCCCCCCcccCCCCccchhhhhccceeeeecC
Q 039586 250 RWTKEMAYADYYERALTNAS-------G------------STK----DWGTPFDSLWGCYGTGIQSFAKLGDSIYFEEEG 306 (592)
Q Consensus 250 ~~tgD~~YaD~~EraLYN~v-------G------------~~~----~~~~~~~~f~CC~gng~r~~akl~~~iY~~~~~ 306 (592)
++|||++|||+|||+|||++ | ..+ .+++++++||||+||++|+++||+++||++++
T Consensus 316 ~~tgd~~yaD~~Er~lyN~~la~~~~d~~~~~Y~~pl~~~~~~~~~~~~~~~~~~~~CC~~n~~r~~~~~~~~iy~~~~- 394 (520)
T PF07944_consen 316 RLTGDARYADYYERALYNALLAGQSPDGGSFFYFNPLNSGPYKHRWKNYRTPWFSFWCCPGNGARGWAKLPDYIYFRDD- 394 (520)
T ss_pred hcCCCchHHHHHHHHHhcccccccCCCCCeeEEecCCccCcCccccccccCCCCCCCCCcchHHHHHHHHhhhheEecC-
Confidence 99999999999999999999 1 233 56778999999999999999999999999997
Q ss_pred CCCcEEEEEeeCcEEEeecCc--EEEEEEeCCCCCCCCceEEEEEEEeCCCCcceEEEEEeccCCCCCCcEEEECCeec-
Q 039586 307 LYPGLYIIQYISSSLDWKSGH--IVLNQKVDPVVSSDPYLHITFTFLPKGAARPLSFGFRISSWTNTNGAKATLNGQDL- 383 (592)
Q Consensus 307 ~~~~LyVnLYipS~~~~~~~~--V~i~q~T~YP~~~~~~~~V~i~V~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~v- 383 (592)
++||||||+||+++|+.++ |+|+|+|+|||++ +|+|+|+++ ++.+|+|+||||+||+ +++|+|||+++
T Consensus 395 --~~l~v~ly~~s~~~~~~~~~~v~i~q~T~yP~~~----~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~i~vNG~~~~ 465 (520)
T PF07944_consen 395 --DGLYVNLYIPSELTWPVGGGTVTITQETDYPFEG----TVRITVSPD-KPVPFTLRLRIPSWAK--GATIRVNGEPVV 465 (520)
T ss_pred --CEEEEEEEcceEEEEEECCcEEEEEEecCCCCCC----CEEEEEEcC-CCccEEEEEEccCCCC--CcEEEECCEeCC
Confidence 6999999999999999665 9999999999999 999999875 8999999999999999 89999999993
Q ss_pred CCCCC--------CCCCCCEEEEEecceeEEEECCCC-CCcccEEEEEeeCCCCcEEEE
Q 039586 384 PLPST--------ARTSDDKLTIQLPLILRIEPIDAD-RPFTTLVTFSKVSRNSTFVLT 433 (592)
Q Consensus 384 ~~~~~--------~Wk~GD~I~L~Lpm~lr~~~~~d~-~~~~~~Va~~r~~~~GPlVy~ 433 (592)
....+ +|++||+|+|+|||++|++++++. +.+.+.||++| ||||||
T Consensus 466 ~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~r----GPlV~a 520 (520)
T PF07944_consen 466 DTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMR----GPLVYA 520 (520)
T ss_pred CCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEe----CchhcC
Confidence 33322 899999999999999999999654 34468999999 999998
No 3
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.03 E-value=1.3e-05 Score=86.59 Aligned_cols=160 Identities=19% Similarity=0.115 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHhhc--cccccc-ccccCC-CC-ch-------HHHHHHHHhcCCh-----HHH
Q 039586 109 RIKWEILAGLLDEYAYADKAEALKITTWMYI--VTRHWD-SLNEET-GG-MN-------DILYMLFTITQDP-----KHL 171 (592)
Q Consensus 109 ~~gHki~aGLld~Y~~tG~~kaL~va~r~~~--~~~~~~-~l~~e~-gG-m~-------eaL~~LY~iTGd~-----ryL 171 (592)
..|| ++.+++++++.+|+++..+++.+.+. ...... ...... +. -+ .+++++|++||++ +||
T Consensus 37 ~~a~-~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL 115 (370)
T PF03663_consen 37 WQAV-MLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYYDDNAWWALALLRAYELTGDQPSDNPKYL 115 (370)
T ss_dssp HHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BHHHHHHHHHHHHHHHHHH--H-----HHH
T ss_pred hHHH-HHHHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCccChHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence 3334 55788999999999999998887621 111111 111111 10 11 3999999999999 999
Q ss_pred HHHhhcccc--Cccchhh--h----cC----CCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCeE-e
Q 039586 172 VLVHLFDKP--CSLGLLA--V----QA----DDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNASHTH-A 238 (592)
Q Consensus 172 ~LA~~F~~~--~~~~~l~--~----~~----D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~y-~ 238 (592)
++|+...+. ..++... - +. .......+.+.-|.+..++++|++|||+.|++.|++.|+.+.+.+++ .
T Consensus 116 ~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~ 195 (370)
T PF03663_consen 116 DLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDP 195 (370)
T ss_dssp HHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--
T ss_pred HHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEEC
Confidence 999975421 1111110 0 00 11112345556677888899999999999999999999999885554 1
Q ss_pred e-cHHH--------------------------HHHHHHhcCCCC-chHHHHHHHHhhcC
Q 039586 239 S-GGTS--------------------------VSRNLFRWTKEM-AYADYYERALTNAS 269 (592)
Q Consensus 239 T-GG~g--------------------------ls~~Lf~~tgD~-~YaD~~EraLYN~v 269 (592)
. |-+- -+-.|++.|++. .|.|..++++--.+
T Consensus 196 ~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~ 254 (370)
T PF03663_consen 196 STGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAI 254 (370)
T ss_dssp TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHH
T ss_pred CCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 1 2111 247899999877 99999988775554
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=97.93 E-value=1.9e-05 Score=74.46 Aligned_cols=70 Identities=29% Similarity=0.339 Sum_probs=48.1
Q ss_pred eEEEeccCCCCcee-eeCCCcceEEeeCCCC---CCCceEEEeeccCCCCCeEEEEecCccceEEEeccccCCCCeeEEe
Q 039586 475 SVMLELFASPGMLV-VRGTDDELVVTDSSSV---HGSSIFRLVTRWDGKAETVSLESVTQKGCFVSTSVNLKSGASMKLS 550 (592)
Q Consensus 475 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~f~~~~gl~g~~~~vs~e~~~~~gc~~~~~~~~~~~~~~~~~ 550 (592)
++.++....|+++| |++....|....+++. ..++-|+|||||.+ +++||||+...||.||.. .+-.|+|.
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh-----~~~~v~l~ 75 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRH-----SNFRVRLE 75 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEE-----ETTEEEEE
T ss_pred eEEEECCCCCCeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEE-----ECCEEEEe
Confidence 46688899999999 8886544443322222 13688999999966 669999999999999963 23445555
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.85 E-value=0.00025 Score=75.70 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhccCCchHHHHhhh---------hcC----Cc---ccc-----------cchHHHHHHHHHHHHHcCC
Q 039586 75 VGHYLGTMALKWATTHNDSLKGKCRL---------WCP----LC---PNA-----------RIKWEILAGLLDEYAYADK 127 (592)
Q Consensus 75 vgkwLsAaA~~~a~t~D~~L~~k~d~---------W~p----~Y---~~~-----------~~gHki~aGLld~Y~~tG~ 127 (592)
.+--|-|.|.++..++|++..+.++. |.+ +| +.+ ...| ++.|+.++|++||+
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~-~l~ala~~~~at~d 133 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAF-ALLAAAQAAKVGGD 133 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHH-HHHHHHHHHHhcCC
Confidence 56788899999988999987776666 111 11 000 2212 45678899999999
Q ss_pred hhHHHHHHHhh--cccccc-------ccccc---CCCCc------hHHHHHHHHhcCChHHHHHHhhccc---cCccch-
Q 039586 128 AEALKITTWMY--IVTRHW-------DSLNE---ETGGM------NDILYMLFTITQDPKHLVLVHLFDK---PCSLGL- 185 (592)
Q Consensus 128 ~kaL~va~r~~--~~~~~~-------~~l~~---e~gGm------~eaL~~LY~iTGd~ryL~LA~~F~~---~~~~~~- 185 (592)
++.|+.|++.+ ..+.++ ..... ...+. .++|.+||++|||++|++.|+...+ ..+.++
T Consensus 134 ~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~ 213 (384)
T cd00249 134 PEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAE 213 (384)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999998872 122221 00000 01111 3689999999999999999976532 112111
Q ss_pred ---hhhc------------CCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCe-------Ee--e--
Q 039586 186 ---LAVQ------------ADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNASHT-------HA--S-- 239 (592)
Q Consensus 186 ---l~~~------------~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~-------y~--T-- 239 (592)
+.+. .+....+|. .-.+..+..+++++||+.|++.++.+|+.+.++-. |- .
T Consensus 214 ~G~~~e~~~~~~~~~~~~~~~~~~Pgh~---~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~ 290 (384)
T cd00249 214 SGVVREHFDEDWNPYNGDKGRHQEPGHQ---FEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDD 290 (384)
T ss_pred cCeEEEEECCCCCCCcCcCCCcCCCchH---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECC
Confidence 1000 011112232 22344667889999999999999999998766331 11 1
Q ss_pred cH-HH--------------HHHHHHhcCCCCchHHHHHHH
Q 039586 240 GG-TS--------------VSRNLFRWTKEMAYADYYERA 264 (592)
Q Consensus 240 GG-~g--------------ls~~Lf~~tgD~~YaD~~Era 264 (592)
+| .. ..-.|+++|||.+|.+.++++
T Consensus 291 ~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~ 330 (384)
T cd00249 291 GGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRA 330 (384)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 00 134567889999999988877
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.77 E-value=0.00031 Score=75.04 Aligned_cols=149 Identities=12% Similarity=0.049 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHh--hccc-----c---cccccc-cCC---CC--c------hHHHHHHHHhcCChHHH
Q 039586 114 ILAGLLDEYAYADKAEALKITTWM--YIVT-----R---HWDSLN-EET---GG--M------NDILYMLFTITQDPKHL 171 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~--~~~~-----~---~~~~l~-~e~---gG--m------~eaL~~LY~iTGd~ryL 171 (592)
++-++..+|+.+|+++.|++|++. |..+ . ....+. ... .+ + ..++.++|++|||++||
T Consensus 58 ~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l 137 (384)
T cd00249 58 QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEAR 137 (384)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHH
Confidence 445667789999999999999877 2111 1 111121 100 11 2 24888999999999999
Q ss_pred HHHhhccc---cCccc-------hhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCe-Eeec
Q 039586 172 VLVHLFDK---PCSLG-------LLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNASHT-HASG 240 (592)
Q Consensus 172 ~LA~~F~~---~~~~~-------~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~-y~TG 240 (592)
++|+...+ ..++. ........++. .|.++-++.++..++++|||+.|++.++.+++.+.++-. ...|
T Consensus 138 ~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G 215 (384)
T cd00249 138 ALAEETIDLLERRFWEDHPGAFDEADPGTPPYRG--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESG 215 (384)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccC
Confidence 99975432 22221 11011112222 466777788899999999999999999999988766321 1123
Q ss_pred HH------------------------H-HH---HHHHhcCCCCchHHHHHHH
Q 039586 241 GT------------------------S-VS---RNLFRWTKEMAYADYYERA 264 (592)
Q Consensus 241 G~------------------------g-ls---~~Lf~~tgD~~YaD~~Era 264 (592)
+. . ++ -+|.++++|.+|.+..++.
T Consensus 216 ~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~ 267 (384)
T cd00249 216 VVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL 267 (384)
T ss_pred eEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 22 1 33 3556789999999988775
No 7
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.74 E-value=0.00026 Score=79.79 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHhhh---hc--------------CCcccccchHH-HHHHHHHHHHHcCChhHHHHHH
Q 039586 74 FVGHYLGTMALKWATTHNDSLKGKCRL---WC--------------PLCPNARIKWE-ILAGLLDEYAYADKAEALKITT 135 (592)
Q Consensus 74 ~vgkwLsAaA~~~a~t~D~~L~~k~d~---W~--------------p~Y~~~~~gHk-i~aGLld~Y~~tG~~kaL~va~ 135 (592)
..+|-|+|+...|..|+|+++.+.+.+ |. .++ + +|. |..+|++-|+.||+++.|++|.
T Consensus 126 ~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~l~~LY~~Tgd~~yL~lA~ 201 (520)
T PF07944_consen 126 CLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGY---P-EHGGINEALVRLYEITGDERYLDLAE 201 (520)
T ss_pred hHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccc---c-ccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 468999999999999999998876666 32 112 2 354 4578999999999999999999
Q ss_pred Hhhc-----c---cccccccc----cCCCCc-------hHHHHHHHHhcCChHHHHHHhhcccc----Ccc--chhhhc-
Q 039586 136 WMYI-----V---TRHWDSLN----EETGGM-------NDILYMLFTITQDPKHLVLVHLFDKP----CSL--GLLAVQ- 189 (592)
Q Consensus 136 r~~~-----~---~~~~~~l~----~e~gGm-------~eaL~~LY~iTGd~ryL~LA~~F~~~----~~~--~~l~~~- 189 (592)
+|.. . ...++.+. .++-|+ ..+++++|++|||++|++.|+.|.+. +.+ +-....
T Consensus 202 ~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~ 281 (520)
T PF07944_consen 202 YFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDH 281 (520)
T ss_pred HHHHHhCCCCCchhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCC
Confidence 9921 1 11111111 122222 24889999999999999999998542 111 111100
Q ss_pred -------CCCCCCCcccc----hhhHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 039586 190 -------ADDISGFCAKT----KIPIVIGSQMRYEVTGDQLQTEILKFFMDIV 231 (592)
Q Consensus 190 -------~D~l~~~HAn~----~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V 231 (592)
...++...+.. .+.++.=...++++|||.+|.+..++..=|-
T Consensus 282 ~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~lyN~ 334 (520)
T PF07944_consen 282 EGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERALYNA 334 (520)
T ss_pred CCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcc
Confidence 11122111111 1222333356789999999999999866653
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.73 E-value=0.00029 Score=76.17 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHhccCCchHHHHhhh------------hcC-------CcccccchHHHHHHHHHHHHHcCCh-----hH
Q 039586 75 VGHYLGTMALKWATTHNDSLKGKCRL------------WCP-------LCPNARIKWEILAGLLDEYAYADKA-----EA 130 (592)
Q Consensus 75 vgkwLsAaA~~~a~t~D~~L~~k~d~------------W~p-------~Y~~~~~gHki~aGLld~Y~~tG~~-----ka 130 (592)
.++.++++...+..++|++..+.+.. |.+ +| |.++. +-.+++++|++||++ +-
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--DD~aw-~~la~l~aye~t~~~~~~~~~y 114 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYY--DDNAW-WALALLRAYELTGDQPSDNPKY 114 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BH--HHHHH-HHHHHHHHHHHH--H-----HH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCcc--ChHHH-HHHHHHHHHHhhCCCcchHHHH
Confidence 58889999999999999998888877 111 22 11112 234678999999999 99
Q ss_pred HHHHHHhhcc-cccccccccCCCCc----------------------hHHHHHHHHhcCChHHHHHHhhccc---c-Ccc
Q 039586 131 LKITTWMYIV-TRHWDSLNEETGGM----------------------NDILYMLFTITQDPKHLVLVHLFDK---P-CSL 183 (592)
Q Consensus 131 L~va~r~~~~-~~~~~~l~~e~gGm----------------------~eaL~~LY~iTGd~ryL~LA~~F~~---~-~~~ 183 (592)
|+.|.+.+.. ...|..-. --||+ -...++||++|||++||+.|++..+ . .++
T Consensus 115 L~~A~~i~~~~~~~wd~~~-cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~ 193 (370)
T PF03663_consen 115 LDLAKEIFDFLISGWDDTS-CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLI 193 (370)
T ss_dssp HHHHHHHHHHHHHTB-SGG--GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB
T ss_pred HHHHHHHHHHHHHhcCCcc-CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeE
Confidence 9999988421 01111000 00221 2488999999999999999997642 2 333
Q ss_pred ch--------hhhcC---CCCCCCcccchhhHHhHHHHHHHHhCCH-HHHHHHHHHHHHHhcc
Q 039586 184 GL--------LAVQA---DDISGFCAKTKIPIVIGSQMRYEVTGDQ-LQTEILKFFMDIVNAS 234 (592)
Q Consensus 184 ~~--------l~~~~---D~l~~~HAn~~ip~~~G~a~~y~~TGD~-~yl~A~~~~w~~V~~~ 234 (592)
++ +.... +.-.....+-+=-++.|++.+|++|+|+ .|++.++++-+.+.++
T Consensus 194 d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 194 DPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp --TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred ECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 22 11010 0001112222233577889999999887 9999999999998775
No 9
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00082 Score=76.75 Aligned_cols=111 Identities=20% Similarity=0.073 Sum_probs=76.1
Q ss_pred chHHHHHHHHhcCChHHHHHHhhc---cccCccch-----hhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHH
Q 039586 154 MNDILYMLFTITQDPKHLVLVHLF---DKPCSLGL-----LAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILK 225 (592)
Q Consensus 154 m~eaL~~LY~iTGd~ryL~LA~~F---~~~~~~~~-----l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~ 225 (592)
|..+|.+.++++||++|+++|++- +...+++. ...+.-... +-.--...++.|+..+|++|+|.+|++.|+
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~-g~leDYA~~i~gll~lye~t~d~~yL~~A~ 494 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVA-GLLEDYAFLILGLLALYEATGDLAYLEKAI 494 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCccccc-ccchhHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 457999999999999999999964 33333322 111111000 111123457889999999999999999999
Q ss_pred HHHHHHhccCeEeecH------HH---------------------HHH---HHHhcCCCCchHHHHHHHH
Q 039586 226 FFMDIVNASHTHASGG------TS---------------------VSR---NLFRWTKEMAYADYYERAL 265 (592)
Q Consensus 226 ~~w~~V~~~~~y~TGG------~g---------------------ls~---~Lf~~tgD~~YaD~~EraL 265 (592)
.+++.+...--=.+|| .+ .+. +|-++|+|.+|.|..|++|
T Consensus 495 ~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L 564 (667)
T COG1331 495 ELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDIL 564 (667)
T ss_pred HHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 9999986643223333 22 233 4556899999999999998
No 10
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.61 E-value=0.00063 Score=70.88 Aligned_cols=148 Identities=15% Similarity=0.025 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHh--hcc-----ccc---c----c---ccccCCCCchHHHHHHHHhcCChHHHHHHhhc
Q 039586 115 LAGLLDEYAYADKAEALKITTWM--YIV-----TRH---W----D---SLNEETGGMNDILYMLFTITQDPKHLVLVHLF 177 (592)
Q Consensus 115 ~aGLld~Y~~tG~~kaL~va~r~--~~~-----~~~---~----~---~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F 177 (592)
+.+|+..|+. |+++.++++++. +.. ... | . -+..+..|+-.+|.+||+.|||++|++.|+..
T Consensus 89 ~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~ 167 (321)
T cd04791 89 GLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEA 167 (321)
T ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3455677888 999999999887 111 111 1 0 01234456778999999999999999999976
Q ss_pred ccc---Cc-------cchhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhc----cCeEeecHHH
Q 039586 178 DKP---CS-------LGLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNA----SHTHASGGTS 243 (592)
Q Consensus 178 ~~~---~~-------~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~----~~~y~TGG~g 243 (592)
.+. .+ ++.-........+.|.+.-| ...+.++++.|+|++|++.++...+.+.+ ...++.|-.|
T Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi--~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~~~lchG~~G 245 (321)
T cd04791 168 LDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGL--GLLMLRLEAITGDKRWRDEADGIAHAALSSCYANPGLFSGTAG 245 (321)
T ss_pred HHHHHHhhccCCCCceEcCCCCccCcccCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccCccccCCcHh
Confidence 532 11 11000011112355665433 34446789999999999998888777654 3477888777
Q ss_pred H---HHHHHhcCCCCchHHHHHHHH
Q 039586 244 V---SRNLFRWTKEMAYADYYERAL 265 (592)
Q Consensus 244 l---s~~Lf~~tgD~~YaD~~EraL 265 (592)
+ ...+.+.++|.+|.+..++..
T Consensus 246 ~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (321)
T cd04791 246 LGAHLNDLAAEGDNALYKAAAERLA 270 (321)
T ss_pred HHHHHHhhcccccChHHHHHHHHHH
Confidence 3 345567899999999888764
No 11
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=97.44 E-value=0.00033 Score=66.19 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=53.2
Q ss_pred cceEEEEEeCCCCCCccCCcccccCceEEEeccCCCCcee-eeCCCcceEEeeCCCC---CCCceEEEeeccCCCCCeEE
Q 039586 449 LQATFRFILNDKPSSEFSSLSDVIGRSVMLELFASPGMLV-VRGTDDELVVTDSSSV---HGSSIFRLVTRWDGKAETVS 524 (592)
Q Consensus 449 ~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~f~~~~gl~g~~~~vs 524 (592)
-.++|+|+.+-.++ ..|++|.=+.||.+| |.+-. |.+.....+ ..++-|..++||.+ +|.||
T Consensus 37 ~da~f~vvpGLa~~-----------~~vSfES~~~PG~yLrh~~~~--v~l~~~d~s~~F~~dATF~~~~Gl~~-~g~~s 102 (142)
T PF05270_consen 37 ADATFRVVPGLADS-----------SCVSFESVNYPGYYLRHSNFR--VRLEKNDGSALFREDATFCPRPGLAG-PGYVS 102 (142)
T ss_dssp HGG-EEEEE-SS-T-----------TCEEEEESSSTTEEEEEETTE--EEEEE--SSHHHHHHT-EEEEE-SSS-TTEEE
T ss_pred cCceEEEEEccCCC-----------CEEEEEECCCCCcEEEEECCE--EEEeecCCCccccCCceEEEecCCCC-CCcce
Confidence 35899988553333 379999999999999 86544 555432221 14567999999998 99999
Q ss_pred EEecCccceEEEe
Q 039586 525 LESVTQKGCFVST 537 (592)
Q Consensus 525 ~e~~~~~gc~~~~ 537 (592)
||+...||.||.-
T Consensus 103 feS~n~Pg~ylrh 115 (142)
T PF05270_consen 103 FESYNYPGRYLRH 115 (142)
T ss_dssp EEESSSTTEEEEE
T ss_pred EEEecCCCeEEEE
Confidence 9999999999973
No 12
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.29 E-value=0.00065 Score=67.07 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=79.1
Q ss_pred hHHHHHHHHhcCChHHHHHHhhccccCccchhhhcC------C---------CCCCCcc-cchhhHHhHHHHHHHHhCCH
Q 039586 155 NDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQA------D---------DISGFCA-KTKIPIVIGSQMRYEVTGDQ 218 (592)
Q Consensus 155 ~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~------D---------~l~~~HA-n~~ip~~~G~a~~y~~TGD~ 218 (592)
..+|+|.|++|||++||+.|++..+.- .-|..++. + ..+..|. |-+|+..+|+-+.+..|+++
T Consensus 36 ~s~l~RAy~~t~d~~Yl~aA~~al~~f-~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~ 114 (189)
T PF06662_consen 36 ISVLARAYQLTGDEKYLDAAKKALNSF-KVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDE 114 (189)
T ss_pred HHHHHHHHHhHCCHHHHHHHHHHHHHh-cChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCH
Confidence 459999999999999999999865421 11111110 0 1122232 77899999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-CeEeecHHH--------------------------HHHHHHhcCCCCchHHHHHH
Q 039586 219 LQTEILKFFMDIVNAS-HTHASGGTS--------------------------VSRNLFRWTKEMAYADYYER 263 (592)
Q Consensus 219 ~yl~A~~~~w~~V~~~-~~y~TGG~g--------------------------ls~~Lf~~tgD~~YaD~~Er 263 (592)
+.++.-++..+.+-+. ..|-||+.+ .-..|..+|+|+.+.+++||
T Consensus 115 ~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 115 EAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888887777776443 367788777 34677889999999999987
No 13
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.73 E-value=0.0055 Score=65.01 Aligned_cols=136 Identities=15% Similarity=-0.004 Sum_probs=86.4
Q ss_pred HHHHcCChhHHHHHHHhhcccccccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccch--hhhcCCCCCCCcc
Q 039586 121 EYAYADKAEALKITTWMYIVTRHWDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGL--LAVQADDISGFCA 198 (592)
Q Consensus 121 ~Y~~tG~~kaL~va~r~~~~~~~~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~--l~~~~D~l~~~HA 198 (592)
.++.+.+..+-.+..+.+.....|.+ |.|-....++++|+.|||++||+..+.+.+..+... -..+.|.+..+|.
T Consensus 11 ~~~e~~~~~~~~~~~r~~~~~~~Wdw---e~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~~~~id~i~~g~~ 87 (357)
T COG4225 11 VAEETAATMIDRIIARTGPTKDRWDW---EQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGLPPRNIDHIAAGLT 87 (357)
T ss_pred HHHHHHHHHHHHHHHhhCCCCccccc---cccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCccchhhhccCce
Confidence 34444444443444343333334432 444455799999999999999999987655544332 2334455544554
Q ss_pred cchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCeEeecHHH---------HH----------HHHHhcCCCCchHH
Q 039586 199 KTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNASHTHASGGTS---------VS----------RNLFRWTKEMAYAD 259 (592)
Q Consensus 199 n~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~y~TGG~g---------ls----------~~Lf~~tgD~~YaD 259 (592)
+..+|+.|||++|++++.+.=+.++..-=.--||.= |. -++=+.+++++|.|
T Consensus 88 ---------L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d 158 (357)
T COG4225 88 ---------LLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFD 158 (357)
T ss_pred ---------eeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHH
Confidence 245899999999999999999988775544445444 33 33446789999988
Q ss_pred HHHHHHhhc
Q 039586 260 YYERALTNA 268 (592)
Q Consensus 260 ~~EraLYN~ 268 (592)
.+=+..-=+
T Consensus 159 ~~~~QF~~~ 167 (357)
T COG4225 159 EALYQFSLH 167 (357)
T ss_pred HHHHHHHHH
Confidence 875544433
No 14
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.29 E-value=0.0077 Score=63.85 Aligned_cols=103 Identities=17% Similarity=0.016 Sum_probs=65.0
Q ss_pred chHHHHHHHHhcCChHHHHHHhhccccCccchhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhc
Q 039586 154 MNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNA 233 (592)
Q Consensus 154 m~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~ 233 (592)
+-.+|.++|+.|||++|++.|+.+.+........ ..+.+.+. ....+...|+.|||++|++++.+..+.+..
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~-------~~~~d~~~-~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGS-------DYNLDDHD-IGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT-------TTSCCGTT-HHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCC-------ccCCchhh-hHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999875533211111 11222222 233346699999999999999999995443
Q ss_pred -cCeEeecHHH-------------------HHHHHHhcCCCCchHHHHHHH
Q 039586 234 -SHTHASGGTS-------------------VSRNLFRWTKEMAYADYYERA 264 (592)
Q Consensus 234 -~~~y~TGG~g-------------------ls~~Lf~~tgD~~YaD~~Era 264 (592)
..--..||+. +--++-..|||++|.|...+-
T Consensus 102 ~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q 152 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQ 152 (336)
T ss_dssp TSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHH
T ss_pred hCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHH
Confidence 3332445542 223445689999998877654
No 15
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=96.24 E-value=0.022 Score=59.39 Aligned_cols=115 Identities=13% Similarity=0.016 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhc--ccc------cc-------cc---cccCCCCchHHHHHHHHhcCChHHHHHHh
Q 039586 114 ILAGLLDEYAYADKAEALKITTWMYI--VTR------HW-------DS---LNEETGGMNDILYMLFTITQDPKHLVLVH 175 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~~~--~~~------~~-------~~---l~~e~gGm~eaL~~LY~iTGd~ryL~LA~ 175 (592)
|..+|+..|+.||+++.++.|.+... ... .| .. +-.+..|+-.++.+||++|+|++|++.|+
T Consensus 144 i~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~ 223 (321)
T cd04791 144 IALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEAD 223 (321)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45567889999999999999998721 111 01 00 11234578889999999999999999999
Q ss_pred hccccCccchhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Q 039586 176 LFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS 234 (592)
Q Consensus 176 ~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~ 234 (592)
...+...-. ......-.|...-+ ..-+.++++.++|++|++.++++.+.+..+
T Consensus 224 ~~~~~~~~~----~~~~~~lchG~~G~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 224 GIAHAALSS----CYANPGLFSGTAGL--GAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred HHHHHHhhh----hccCccccCCcHhH--HHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 875532100 01112235653222 223346678999999999999998887643
No 16
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.037 Score=63.60 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHh--hccccccc------ccccCC--CCc-------hHHHHHHHHhcCChHHHHHHh
Q 039586 113 EILAGLLDEYAYADKAEALKITTWM--YIVTRHWD------SLNEET--GGM-------NDILYMLFTITQDPKHLVLVH 175 (592)
Q Consensus 113 ki~aGLld~Y~~tG~~kaL~va~r~--~~~~~~~~------~l~~e~--gGm-------~eaL~~LY~iTGd~ryL~LA~ 175 (592)
.++++|..+++++|+++.+++|++. |..+.++. .+.++- -|. ..+|..||++|+|.+||+.|.
T Consensus 415 lmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~ 494 (667)
T COG1331 415 LMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAI 494 (667)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 4668888999999999999999998 33332221 112221 122 249999999999999999999
Q ss_pred hcccc---Cccchh-------hh-------cCCCCC--CCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 039586 176 LFDKP---CSLGLL-------AV-------QADDIS--GFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIV 231 (592)
Q Consensus 176 ~F~~~---~~~~~l-------~~-------~~D~l~--~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V 231 (592)
.+.+. .|+++. .. ..+... ..-+|.. .+..+.++-.+|||.+|.++|+..-+.+
T Consensus 495 ~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~--~~~~L~~Ls~ltg~~~y~e~A~~~L~a~ 567 (667)
T COG1331 495 ELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAV--AAQALLRLSLLTGDARYLEAAEDILQAF 567 (667)
T ss_pred HHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHH--HHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 88653 233332 00 001100 1112211 2445678899999999999998876654
No 17
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.014 Score=64.61 Aligned_cols=160 Identities=15% Similarity=0.050 Sum_probs=100.3
Q ss_pred ccc-cch---hhHHHHHHHHHHhccCCchHHHHhhhhc--------------CCcccccchHH-HHHHHHHHHHHcCChh
Q 039586 69 EFR-GHF---VGHYLGTMALKWATTHNDSLKGKCRLWC--------------PLCPNARIKWE-ILAGLLDEYAYADKAE 129 (592)
Q Consensus 69 ~lr-Gh~---vgkwLsAaA~~~a~t~D~~L~~k~d~W~--------------p~Y~~~~~gHk-i~aGLld~Y~~tG~~k 129 (592)
+|| +|+ .||-++|+--.+..|+-..|...+-..+ +.| |- |. |..+|++-|+.||++|
T Consensus 123 nlr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~---~g-H~eielAl~~Ly~~Tg~~r 198 (589)
T COG3533 123 NLRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGY---CG-HPEIELALAELYRLTGDQR 198 (589)
T ss_pred ccccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCccccccccc---cC-CCchhHHHHHHHHHhcChH
Confidence 444 555 4799999999999999999888776622 346 65 76 5678999999999999
Q ss_pred HHHHHHHhhcc---cccccccccCCCCch-------HHHHHHHHhcCChHHHHHHhhccccCccchhhhcCCCCCC--Cc
Q 039586 130 ALKITTWMYIV---TRHWDSLNEETGGMN-------DILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQADDISG--FC 197 (592)
Q Consensus 130 aL~va~r~~~~---~~~~~~l~~e~gGm~-------eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~--~H 197 (592)
-|++|++|... +...+...+-.+||- -.+.+||++|||+.+-..+.+|-++- ...+-.+.+ +|
T Consensus 199 YL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~-----t~k~~YitGG~g~ 273 (589)
T COG3533 199 YLDLARRFIHQRGVEPLAQRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNV-----TTRQSYITGGNGS 273 (589)
T ss_pred HHHHHHHHHHHhccChhhcCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHh-----hhhheEEecccCC
Confidence 99999998211 100000111125552 28899999999999999999885431 100000000 12
Q ss_pred ccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCeEeecHHH
Q 039586 198 AKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNASHTHASGGTS 243 (592)
Q Consensus 198 An~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~y~TGG~g 243 (592)
.|.| +.--|.++.+..|-++|...=-.+..+||+--|+-|
T Consensus 274 ~~E~------F~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~ 313 (589)
T COG3533 274 SNEH------FGPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDS 313 (589)
T ss_pred cccc------CCccccCcccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence 1111 122355666666666666554445555666666665
No 18
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.74 E-value=0.037 Score=58.92 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhc--ccc--cccc-cccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhhhc
Q 039586 115 LAGLLDEYAYADKAEALKITTWMYI--VTR--HWDS-LNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQ 189 (592)
Q Consensus 115 ~aGLld~Y~~tG~~kaL~va~r~~~--~~~--~~~~-l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~ 189 (592)
+.|+..+|++|||++.|+.+.+++. +++ .... +..-..| -.|.-||+.|||++||++|...-+.-...| +-.
T Consensus 42 lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~~~~id~i~~g--~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~-Rt~ 118 (357)
T COG4225 42 LYGVARAYEATGDAEYLDYLKTWFDEQIDEGGLPPRNIDHIAAG--LTLLPLYEQTGDPRYLEAAIKLASWLVHEP-RTK 118 (357)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCccchhhhccC--ceeeehhhhhCCHHHHHHHHHHHHHHhhCc-ccC
Confidence 4677789999999999999998732 111 1110 1100111 289999999999999999887643211111 000
Q ss_pred CCCCCCCcccc---hh---hHHhHH---HHHHHHhCCHHHHHH-HHHHHHHH
Q 039586 190 ADDISGFCAKT---KI---PIVIGS---QMRYEVTGDQLQTEI-LKFFMDIV 231 (592)
Q Consensus 190 ~D~l~~~HAn~---~i---p~~~G~---a~~y~~TGD~~yl~A-~~~~w~~V 231 (592)
... -.|-+. ++ -+++|. ++...++|+++|.+- ...||..+
T Consensus 119 eG~--f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~ 168 (357)
T COG4225 119 EGG--FQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHE 168 (357)
T ss_pred CCc--cccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 000 012221 01 034443 677889999999874 45566554
No 19
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.71 E-value=0.038 Score=54.71 Aligned_cols=111 Identities=21% Similarity=0.374 Sum_probs=75.9
Q ss_pred CCccCCCcccccchhhHHHHHHHHHHhccCCchHHHHhhh-----------------------hcCCcccc----cc-hH
Q 039586 61 GGWEDPICEFRGHFVGHYLGTMALKWATTHNDSLKGKCRL-----------------------WCPLCPNA----RI-KW 112 (592)
Q Consensus 61 gGWe~~d~~lrGh~vgkwLsAaA~~~a~t~D~~L~~k~d~-----------------------W~p~Y~~~----~~-gH 112 (592)
.||.+.=++ |+=||..+.+|..|+|++..+.+++ |-+.|... ++ ||
T Consensus 24 ~gW~SamaQ------G~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGf 97 (189)
T PF06662_consen 24 PGWYSAMAQ------GQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGF 97 (189)
T ss_pred CCcHhHHHH------HHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehH
Confidence 457765433 8999999999999999998777766 44444321 22 45
Q ss_pred HHH--HHHHHHHHHcCChhHHHHHHHh----------hcc------c-ccc---c--ccc--cCCCCchHHHHHHHHhcC
Q 039586 113 EIL--AGLLDEYAYADKAEALKITTWM----------YIV------T-RHW---D--SLN--EETGGMNDILYMLFTITQ 166 (592)
Q Consensus 113 ki~--aGLld~Y~~tG~~kaL~va~r~----------~~~------~-~~~---~--~l~--~e~gGm~eaL~~LY~iTG 166 (592)
|+ -||-|++..+++++|.++..+= |.. + +|- . .+. .-|.-|..=|..||.+||
T Consensus 98 -iysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~ 176 (189)
T PF06662_consen 98 -IYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITG 176 (189)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcC
Confidence 43 5899999999999998876643 110 0 110 0 011 122334568999999999
Q ss_pred ChHHHHHHhhcc
Q 039586 167 DPKHLVLVHLFD 178 (592)
Q Consensus 167 d~ryL~LA~~F~ 178 (592)
|+.+.+.|+++.
T Consensus 177 d~~f~~~a~rW~ 188 (189)
T PF06662_consen 177 DPIFKEYAERWK 188 (189)
T ss_pred CHHHHHHHHHhc
Confidence 999999999874
No 20
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.63 E-value=0.053 Score=57.48 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhh---cccccccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhh--h
Q 039586 114 ILAGLLDEYAYADKAEALKITTWMY---IVTRHWDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLA--V 188 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~~---~~~~~~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~--~ 188 (592)
.+.||+.+|++||+++.++.++++. ..+... ......-..-..+..||++|||++|++++....+.-+..+.. .
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~ 108 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGS-DYNLDDHDIGFLLLDLYERTGDEKYKDAAIQAADWLLARRPRTSD 108 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT-TTSCCGTTHHHHHHHHHHHH-THHHHHHHHHHHHHHHHTSCBECT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCC-ccCCchhhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4578889999999999999999872 111111 000011112247788999999999999988765411100000 0
Q ss_pred c----CCCCCCCcccchhhHH-hHHHHHHHHhCCHHHHHHHHHHHHHHhc
Q 039586 189 Q----ADDISGFCAKTKIPIV-IGSQMRYEVTGDQLQTEILKFFMDIVNA 233 (592)
Q Consensus 189 ~----~D~l~~~HAn~~ip~~-~G~a~~y~~TGD~~yl~A~~~~w~~V~~ 233 (592)
+ ...-+..--.-.+++. -=++..++.|||++|++.+.+-++...+
T Consensus 109 G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~ 158 (336)
T PF07470_consen 109 GGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRK 158 (336)
T ss_dssp GCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 0 0000000001123322 2235678999999999988776665543
No 21
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=95.56 E-value=0.017 Score=61.26 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhh--ccccccc--------ccccCCC---Cc------hHHHHHHHHhcCChHHHHHH
Q 039586 114 ILAGLLDEYAYADKAEALKITTWMY--IVTRHWD--------SLNEETG---GM------NDILYMLFTITQDPKHLVLV 174 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~~--~~~~~~~--------~l~~e~g---Gm------~eaL~~LY~iTGd~ryL~LA 174 (592)
++.|+-. +.+||++++++.|.+.+ ..+.++. ....... ++ .|++..||++|||++|++.|
T Consensus 86 ~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a 164 (346)
T PF07221_consen 86 ALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRA 164 (346)
T ss_dssp HHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455544 78999999999999872 1111111 1111110 12 36899999999999999999
Q ss_pred hhccc---cCccch---------------hhhc--CC-----CCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHH
Q 039586 175 HLFDK---PCSLGL---------------LAVQ--AD-----DISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMD 229 (592)
Q Consensus 175 ~~F~~---~~~~~~---------------l~~~--~D-----~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~ 229 (592)
+.+.+ ..|+++ +... .| .+.-+|.-..+.++.-++ .-...+++.+++.++++.+
T Consensus 165 ~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~-~~~~~~~~~~~~~a~~l~~ 243 (346)
T PF07221_consen 165 EELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAA-RLTGRGDPDWLERARRLFD 243 (346)
T ss_dssp HHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHH-HHCHCT-HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHH-HhcccccHHHHHHHHHHHH
Confidence 86643 122221 1111 11 123356655555444333 1135688899998888888
Q ss_pred HHhccCeEeecH-HH----------------H--------HHHHHhcCCCCchHHHHHHHH
Q 039586 230 IVNASHTHASGG-TS----------------V--------SRNLFRWTKEMAYADYYERAL 265 (592)
Q Consensus 230 ~V~~~~~y~TGG-~g----------------l--------s~~Lf~~tgD~~YaD~~EraL 265 (592)
.....-.-..|| +- | .-.+++.|+|.+|.+.++++.
T Consensus 244 ~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~ 304 (346)
T PF07221_consen 244 FALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVW 304 (346)
T ss_dssp HHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 776643323333 22 2 235678899999999888775
No 22
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=95.41 E-value=0.15 Score=60.60 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=93.2
Q ss_pred HHHHHHcCChhHHHHHHHhhc-----ccc-----cccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhhh
Q 039586 119 LDEYAYADKAEALKITTWMYI-----VTR-----HWDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAV 188 (592)
Q Consensus 119 ld~Y~~tG~~kaL~va~r~~~-----~~~-----~~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~ 188 (592)
...|+.|++++..+.+.++.. .+. ....+-.+.+|+--+|..||+.|++++|++.|+...+.- .....
T Consensus 501 ~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l--~~~~~ 578 (825)
T cd04792 501 AYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLI--DELIE 578 (825)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHhhc
Confidence 456889999998888887621 111 111133566778889999999999999999998765431 01111
Q ss_pred cCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc----------------CeEeecHHHHH---HHHH
Q 039586 189 QADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS----------------HTHASGGTSVS---RNLF 249 (592)
Q Consensus 189 ~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~----------------~~y~TGG~gls---~~Lf 249 (592)
........|...- ++..+..+|+.++++.+++++...-+.+... -.++.|-.|+. -++.
T Consensus 579 ~~~~~D~~~G~aG--ii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~ 656 (825)
T cd04792 579 KDEKLDFISGAAG--LILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLY 656 (825)
T ss_pred cccCCCEeeecHH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHH
Confidence 1112222344222 3445567899999999999888776654331 25566666633 4566
Q ss_pred hcCCCCchHHHHHHHH
Q 039586 250 RWTKEMAYADYYERAL 265 (592)
Q Consensus 250 ~~tgD~~YaD~~EraL 265 (592)
..++|.+|.+.+++++
T Consensus 657 ~~~~d~~~~~~a~~~l 672 (825)
T cd04792 657 KVTGDSRYLKLAHKAL 672 (825)
T ss_pred HHcCcHHHHHHHHHHH
Confidence 7899999999887776
No 23
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=94.69 E-value=0.27 Score=58.54 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=95.9
Q ss_pred HHHHHHHHcCChhHHHHHHHhhc--cc-----ccccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhhh-
Q 039586 117 GLLDEYAYADKAEALKITTWMYI--VT-----RHWDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAV- 188 (592)
Q Consensus 117 GLld~Y~~tG~~kaL~va~r~~~--~~-----~~~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~- 188 (592)
.|...|..+++++.++.+.+... .+ ...+ +-.+..|..-+|..||+.|++++++++|....+.-.......
T Consensus 549 ~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D-~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~ 627 (825)
T cd04792 549 ALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLD-FISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNED 627 (825)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCC-EeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhcc
Confidence 44567888999999998887721 11 0111 224556777899999999999999999887654311000000
Q ss_pred -------cCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc-----------------CeEeecHHH-
Q 039586 189 -------QADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS-----------------HTHASGGTS- 243 (592)
Q Consensus 189 -------~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~-----------------~~y~TGG~g- 243 (592)
........|...-| +..+..+|+.|+|+.|+++++.+++..... -.++.|..|
T Consensus 628 ~~~~~~~~~~~~G~aHG~sGi--~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI 705 (825)
T cd04792 628 GGIGPAEQPNLTGFAHGASGI--AWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGI 705 (825)
T ss_pred CCcccccccccccccccHHHH--HHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHH
Confidence 01122345664333 445678899999999999999988753221 257777777
Q ss_pred -HHH-HHHhc--CCCCchHHHHHHHHhhc
Q 039586 244 -VSR-NLFRW--TKEMAYADYYERALTNA 268 (592)
Q Consensus 244 -ls~-~Lf~~--tgD~~YaD~~EraLYN~ 268 (592)
+++ .+.+. ..|..+.+.+++++-..
T Consensus 706 ~lal~~~~~~~~~~d~~~~~~i~~~~~~~ 734 (825)
T cd04792 706 LLARLELLKFNDLDDEELKEEIEIALKTT 734 (825)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 333 33455 57888888888887554
No 24
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=93.77 E-value=0.3 Score=51.89 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhccCCchHHHHhhh---------hcCC---ccc----c---------cchHHHHHHHHHHHHHcCChhH
Q 039586 76 GHYLGTMALKWATTHNDSLKGKCRL---------WCPL---CPN----A---------RIKWEILAGLLDEYAYADKAEA 130 (592)
Q Consensus 76 gkwLsAaA~~~a~t~D~~L~~k~d~---------W~p~---Y~~----~---------~~gHki~aGLld~Y~~tG~~ka 130 (592)
.-.|-|+|. +..++|++.++.+.+ |.|. |.. + .| | ++.++++.|+++|+++.
T Consensus 84 af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~m-h-l~eA~l~l~~~~~~~~~ 160 (346)
T PF07221_consen 84 AFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHM-H-LLEAFLALYEATGDPRY 160 (346)
T ss_dssp HHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHH-H-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhH-H-HHHHHHHHHHhccCHHH
Confidence 345778788 677889887777666 3321 100 0 23 4 44677899999999999
Q ss_pred HHHHHHh-------hcc-------c---ccccccc-cC----------CCCch-H---HHHHHH--HhcCChHHHHHHhh
Q 039586 131 LKITTWM-------YIV-------T---RHWDSLN-EE----------TGGMN-D---ILYMLF--TITQDPKHLVLVHL 176 (592)
Q Consensus 131 L~va~r~-------~~~-------~---~~~~~l~-~e----------~gGm~-e---aL~~LY--~iTGd~ryL~LA~~ 176 (592)
++.+.++ +.. + .-|..+. .+ ..||. | -|.++. ...+++++++.|..
T Consensus 161 ~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~ 240 (346)
T PF07221_consen 161 LDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARR 240 (346)
T ss_dssp HHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 9998877 111 1 1122111 11 12444 5 344444 45589999988866
Q ss_pred ccccC---ccchhhh----cCCCCCC-Cccc-c---hhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhc
Q 039586 177 FDKPC---SLGLLAV----QADDISG-FCAK-T---KIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNA 233 (592)
Q Consensus 177 F~~~~---~~~~l~~----~~D~l~~-~HAn-~---~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~ 233 (592)
+.... .+++... ..|.... .+.. . |.=.+.+++.+|+.|||+.|++.+++.|+.+.+
T Consensus 241 l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~ 309 (346)
T PF07221_consen 241 LFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFR 309 (346)
T ss_dssp HHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 53311 1111100 0011000 0011 1 223456778899999999999999999998765
No 25
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=92.08 E-value=0.57 Score=52.27 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHh-------hcc-ccc---------------cc--ccccCCCCchHHHHHHHHhcC
Q 039586 114 ILAGLLDEYAYA--DKAEALKITTWM-------YIV-TRH---------------WD--SLNEETGGMNDILYMLFTITQ 166 (592)
Q Consensus 114 i~aGLld~Y~~t--G~~kaL~va~r~-------~~~-~~~---------------~~--~l~~e~gGm~eaL~~LY~iTG 166 (592)
++-||+.+|+.+ +++.+|+.|+.+ |.. ..+ .. ..-.|.|.+..-+.+|.++||
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 568999999999 999888887766 210 010 00 111355666678999999999
Q ss_pred ChHHHHHHhhcccc------C--ccchhhhcCCCCCC----Ccc---cchhhHHhHHHHHHHHhC--CHHHHHHHHHHHH
Q 039586 167 DPKHLVLVHLFDKP------C--SLGLLAVQADDISG----FCA---KTKIPIVIGSQMRYEVTG--DQLQTEILKFFMD 229 (592)
Q Consensus 167 d~ryL~LA~~F~~~------~--~~~~l~~~~D~l~~----~HA---n~~ip~~~G~a~~y~~TG--D~~yl~A~~~~w~ 229 (592)
|++|.+.|++..+. + +.+-.....|...+ .+. -..=..|.=+.+.|.++| |+.|++.-+...+
T Consensus 162 d~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~~ 241 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAVD 241 (452)
T ss_dssp -THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHHH
Confidence 99999999986431 1 11100000111000 000 001123555678899999 8888877776666
Q ss_pred HHhc
Q 039586 230 IVNA 233 (592)
Q Consensus 230 ~V~~ 233 (592)
.|.+
T Consensus 242 ~i~~ 245 (452)
T PF01532_consen 242 AIKK 245 (452)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 26
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=91.92 E-value=2.8 Score=43.35 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhc--cccc-----cc--ccccCCCCchHHHHHHHHhcCChHHHHHHhhccccC-----
Q 039586 116 AGLLDEYAYADKAEALKITTWMYI--VTRH-----WD--SLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPC----- 181 (592)
Q Consensus 116 aGLld~Y~~tG~~kaL~va~r~~~--~~~~-----~~--~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~----- 181 (592)
..+...|+.+++++.++.+.++.. .... .. -+..+..|+.-+|..+|+.|+++.+++++....+.-
T Consensus 57 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (343)
T cd04434 57 YALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGK 136 (343)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhh
Confidence 344567888999999998888721 1110 01 122345577789999999999999999988764311
Q ss_pred -----ccchhhh--cCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc--------------------
Q 039586 182 -----SLGLLAV--QADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS-------------------- 234 (592)
Q Consensus 182 -----~~~~l~~--~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~-------------------- 234 (592)
..++... +.......|...- ++..+..+++.+.|+.+.++++...+...+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~HG~~G--i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (343)
T cd04434 137 NGDGKIRWPMYFPEGRVNLGLAHGLAG--ILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFL 214 (343)
T ss_pred hccCCCceeeeccCCccccchhhhhHH--HHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccc
Confidence 0011000 0111223455322 3445567888899998988888776654321
Q ss_pred CeEeecHHHH---HHHHHhcCCCCchHHHHHHHHhhcC
Q 039586 235 HTHASGGTSV---SRNLFRWTKEMAYADYYERALTNAS 269 (592)
Q Consensus 235 ~~y~TGG~gl---s~~Lf~~tgD~~YaD~~EraLYN~v 269 (592)
-.++.|..|+ -..+.+.++|..|.+..++++-+.+
T Consensus 215 ~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (343)
T cd04434 215 VAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAW 252 (343)
T ss_pred ceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 2556666663 2456678899999999998887665
No 27
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=91.57 E-value=1.5 Score=45.27 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=88.8
Q ss_pred HHHHHHHHcCChhHHHHHHHhhc-----cccc---ccccccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhh-
Q 039586 117 GLLDEYAYADKAEALKITTWMYI-----VTRH---WDSLNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLA- 187 (592)
Q Consensus 117 GLld~Y~~tG~~kaL~va~r~~~-----~~~~---~~~l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~- 187 (592)
.+...|+.+++++..+.+.++.. .... ...+-.+.+|+--+|..+|+.++|+++++.+......-......
T Consensus 10 ~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
T cd04434 10 LLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILED 89 (343)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcc
Confidence 34567889999999888887721 1111 11233466678889999999999999999988876543211110
Q ss_pred hcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc--------------------CeEeecHHHHH--
Q 039586 188 VQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS--------------------HTHASGGTSVS-- 245 (592)
Q Consensus 188 ~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~--------------------~~y~TGG~gls-- 245 (592)
.......-.|... -+...+..+|+.++++.+.+.+..+-+.+... -.++.|-.|+.
T Consensus 90 ~~~~~~d~~~G~a--G~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~ 167 (343)
T cd04434 90 LKDLNYDLLSGLA--GLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLA 167 (343)
T ss_pred cCCCCcceeechH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHH
Confidence 0111222334432 23444567888899998888877776665332 13555655532
Q ss_pred -HHHHhcCCCCchHHHHHHHH
Q 039586 246 -RNLFRWTKEMAYADYYERAL 265 (592)
Q Consensus 246 -~~Lf~~tgD~~YaD~~EraL 265 (592)
-++...+.+..+.+..+.++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~ 188 (343)
T cd04434 168 LLLLYKKTVDKSLEALIKALL 188 (343)
T ss_pred HHHHHHhcCChhHHHHHHHHH
Confidence 34445566666666554443
No 28
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=90.84 E-value=1.6 Score=49.69 Aligned_cols=66 Identities=27% Similarity=0.345 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHh-------hc-cccc----------------cc---ccccCCCCchHHHHHHHHhc
Q 039586 113 EILAGLLDEYAYADKAEALKITTWM-------YI-VTRH----------------WD---SLNEETGGMNDILYMLFTIT 165 (592)
Q Consensus 113 ki~aGLld~Y~~tG~~kaL~va~r~-------~~-~~~~----------------~~---~l~~e~gGm~eaL~~LY~iT 165 (592)
.++-||+.+|..||++.+|+.|+.+ |. ...+ |. ..-.|.|.+..-+..|.++|
T Consensus 159 R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lT 238 (522)
T PTZ00470 159 RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEIT 238 (522)
T ss_pred hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhh
Confidence 3678999999999999888887765 21 1111 10 11235566666789999999
Q ss_pred CChHHHHHHhhcc
Q 039586 166 QDPKHLVLVHLFD 178 (592)
Q Consensus 166 Gd~ryL~LA~~F~ 178 (592)
||++|.+.|++..
T Consensus 239 Gd~kY~~~a~~i~ 251 (522)
T PTZ00470 239 GDPKYAEYVDKVM 251 (522)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998764
No 29
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=89.05 E-value=3.3 Score=44.09 Aligned_cols=115 Identities=13% Similarity=-0.047 Sum_probs=75.1
Q ss_pred CchHHHHHHHHhcCChHHHHHHhhcccc-------Cccchhhhc----CCCCCCCcccchhhHHhHHHHHHHHhCCHHHH
Q 039586 153 GMNDILYMLFTITQDPKHLVLVHLFDKP-------CSLGLLAVQ----ADDISGFCAKTKIPIVIGSQMRYEVTGDQLQT 221 (592)
Q Consensus 153 Gm~eaL~~LY~iTGd~ryL~LA~~F~~~-------~~~~~l~~~----~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl 221 (592)
|+.-+|.++|..|+++++++.++...+. ...+|-..+ .....+.|...- ++......+++++|++++
T Consensus 169 GI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~G--i~~~l~~~~~~~~~~~~~ 246 (343)
T cd04794 169 GILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPG--IVYLLAKAYLVFKEEQYL 246 (343)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCch--HHHHHHHHHHHhCCHHHH
Confidence 5667999999999999999998865431 112221111 111235666332 344556788999999999
Q ss_pred HHHHHHHHHHhcc------CeEeecHHH---HHHHHHhcCCCCchHHHHHHHHhhcC
Q 039586 222 EILKFFMDIVNAS------HTHASGGTS---VSRNLFRWTKEMAYADYYERALTNAS 269 (592)
Q Consensus 222 ~A~~~~w~~V~~~------~~y~TGG~g---ls~~Lf~~tgD~~YaD~~EraLYN~v 269 (592)
+++++.-+.+.++ ..+..|-.| .--+|.+.++|.+|.+...+.+=..+
T Consensus 247 ~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~ 303 (343)
T cd04794 247 EAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLI 303 (343)
T ss_pred HHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 9888766655432 355666555 34566788999999888776655554
No 30
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=88.99 E-value=4.3 Score=41.16 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=60.5
Q ss_pred cEEEEEeeCCCCcEEEEeCCCCCCCCCCCccccceEEEEEeCCCCCCccCCcccccCceEE--EeccCCCCcee-eeCCC
Q 039586 417 TLVTFSKVSRNSTFVLTIYPNGKSSKSGTDIALQATFRFILNDKPSSEFSSLSDVIGRSVM--LELFASPGMLV-VRGTD 493 (592)
Q Consensus 417 ~~Va~~r~~~~GPlVy~le~~~~~p~~g~d~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~ 493 (592)
+.|++ ..+||-++-.+|++... ..-..-.||..-....|+ +..-..||..+| +.|-..+--++ -|..+
T Consensus 133 QsitF--vledgsY~I~VeDl~k~-----qEKDKVLlryYeSq~pS~--esgdgvDGk~LMVnlSPtkdkDf~LHAN~ke 203 (268)
T PF15095_consen 133 QSITF--VLEDGSYEIYVEDLGKD-----QEKDKVLLRYYESQCPSS--ESGDGVDGKKLMVNLSPTKDKDFLLHANNKE 203 (268)
T ss_dssp EEEEE--EE-SS-EEEEEEE--S-----------EEEEEEE----TT--TS----S---EEEEEESS--SSEEEEEETTT
T ss_pred ceEEE--EEeCCcEEEEehhcccc-----cccceEEEEeccCCCCcc--cCCCCccceEEEEEcCCccchheEEecCCcc
Confidence 45777 56889999999985551 122356788665444442 234558999999 89999999988 56777
Q ss_pred cceEEeeCCCCCCCceEEEeeccCCCCCeEEEEecCccceEEEe
Q 039586 494 DELVVTDSSSVHGSSIFRLVTRWDGKAETVSLESVTQKGCFVST 537 (592)
Q Consensus 494 ~~~~~~~~~~~~~~~~f~~~~gl~g~~~~vs~e~~~~~gc~~~~ 537 (592)
-++-++.--..-|.-.|.+.-- -....||||-.++||-|+-.
T Consensus 204 HSVeLqKcE~~lpdQaff~lh~--~ss~~vsfeck~~pg~~igv 245 (268)
T PF15095_consen 204 HSVELQKCENPLPDQAFFVLHK--KSSECVSFECKNNPGVFIGV 245 (268)
T ss_dssp TEEEEEE--SS--TTT-EEEEE---SSS-EEEEESSSTTEEEEE
T ss_pred ceeeeeecCCCCCcceeEEEec--CCCceeEEEecCCCceEEee
Confidence 7787775444446656666543 26789999999999999964
No 31
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=86.84 E-value=1.7 Score=49.22 Aligned_cols=66 Identities=27% Similarity=0.324 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHh--hccccccc----------------ccccCCCCch--------HHHHHHHHhcCC
Q 039586 114 ILAGLLDEYAYADKAEALKITTWM--YIVTRHWD----------------SLNEETGGMN--------DILYMLFTITQD 167 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~--~~~~~~~~----------------~l~~e~gGm~--------eaL~~LY~iTGd 167 (592)
++.||+|+|+++|+-..|+-|.++ -.+..+|+ .+.+.+.|-+ -.|++||.+++.
T Consensus 582 lI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~ 661 (786)
T KOG2244|consen 582 LISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAA 661 (786)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhH
Confidence 679999999999999999999988 11111111 1222333321 379999999999
Q ss_pred hHHHHHHhhccc
Q 039586 168 PKHLVLVHLFDK 179 (592)
Q Consensus 168 ~ryL~LA~~F~~ 179 (592)
+.||+-|.+...
T Consensus 662 e~yl~ka~~ll~ 673 (786)
T KOG2244|consen 662 ESYLNKAHRLLA 673 (786)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 32
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=85.85 E-value=4.3 Score=43.20 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHh--hcc-----cccccc------------cccCCCCchHHHHHHHHhcCChHHHHHH
Q 039586 114 ILAGLLDEYAYADKAEALKITTWM--YIV-----TRHWDS------------LNEETGGMNDILYMLFTITQDPKHLVLV 174 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~--~~~-----~~~~~~------------l~~e~gGm~eaL~~LY~iTGd~ryL~LA 174 (592)
|+..|+..+..+++++.++.+.+. +.. +..|.. .=.+..|+..++.++|++++|+++++.|
T Consensus 170 I~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~ 249 (343)
T cd04794 170 ILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAA 249 (343)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 344567788888999988888765 111 111210 0012347788999999999999999998
Q ss_pred hhccccCccchhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Q 039586 175 HLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS 234 (592)
Q Consensus 175 ~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~ 234 (592)
+.-.+.-+...+. .....-.|...- ...++.++|+.|+|+++++.|..+.+.+.++
T Consensus 250 ~~~~~~~~~~g~~--~~~~~lCHG~~G--~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 250 IKCGELIWKRGLL--KKGPGLCHGIAG--NAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred HHHHHHHHHhCCc--cCCCccccCccc--hHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 8765421100000 011223576433 2455678899999999999999999887764
No 33
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=85.12 E-value=3.3 Score=47.26 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=65.6
Q ss_pred HHHHHHHhcCChHHHHHHhhccc---cCccchh---------hhcCCCCCCCc-c-cc-hhh----HHhHHHHHHHHhCC
Q 039586 157 ILYMLFTITQDPKHLVLVHLFDK---PCSLGLL---------AVQADDISGFC-A-KT-KIP----IVIGSQMRYEVTGD 217 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F~~---~~~~~~l---------~~~~D~l~~~H-A-n~-~ip----~~~G~a~~y~~TGD 217 (592)
.|.-.|.+|||+.||+.|+-+-+ +.|..|- ..+... ..+ + .. .+. +..=+..+.++|||
T Consensus 163 GLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~--~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd 240 (522)
T PTZ00470 163 GLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKS--YPGWAGGCSILSEVGTLQLEFNYLSEITGD 240 (522)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCC--CcccCCCccchhhhhhHHHHHHHHHHhhCC
Confidence 78888999999999999986532 2332111 000000 000 0 11 111 22223668999999
Q ss_pred HHHHHHHHHHHHHHhccCeEeecHHH-----------------------HHHHHHh---cC--CCCchHHHHHHHHhhc
Q 039586 218 QLQTEILKFFMDIVNASHTHASGGTS-----------------------VSRNLFR---WT--KEMAYADYYERALTNA 268 (592)
Q Consensus 218 ~~yl~A~~~~w~~V~~~~~y~TGG~g-----------------------ls~~Lf~---~t--gD~~YaD~~EraLYN~ 268 (592)
++|.+++++.++.+.+.+.-..|-.+ +-++|+. ++ .|..|.|.++.++-..
T Consensus 241 ~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~~~a~~~i 319 (522)
T PTZ00470 241 PKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLFVESAKGI 319 (522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999999888655432222221 4455543 45 4778988888765544
No 34
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=83.72 E-value=4.5 Score=48.31 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhccCCchHHHHhhhhc------------CCcccccch-HHHHHHHHHHHHHcCChhHHHHHHHh----
Q 039586 75 VGHYLGTMALKWATTHNDSLKGKCRLWC------------PLCPNARIK-WEILAGLLDEYAYADKAEALKITTWM---- 137 (592)
Q Consensus 75 vgkwLsAaA~~~a~t~D~~L~~k~d~W~------------p~Y~~~~~g-Hki~aGLld~Y~~tG~~kaL~va~r~---- 137 (592)
.+-++=|+...+..+.|..|++.+..-. |-| .-| --++.-|+..|..|..+|.|++|.-.
T Consensus 698 ~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~---i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l 774 (963)
T COG4403 698 LSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDF---INGLAGVICVLVSIYKLTDEPKFLELAISLGRIL 774 (963)
T ss_pred cchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcch---hhccHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 5667788888999999999999988732 333 221 11345578999999999999999876
Q ss_pred h----ccccccc-cc-ccCCC--CchHHHHHHHHhcCChHHHHHHhhc
Q 039586 138 Y----IVTRHWD-SL-NEETG--GMNDILYMLFTITQDPKHLVLVHLF 177 (592)
Q Consensus 138 ~----~~~~~~~-~l-~~e~g--Gm~eaL~~LY~iTGd~ryL~LA~~F 177 (592)
+ ..+. ++ ++ +-.|| |+--+|.+||+.|||+++++.++..
T Consensus 775 ~~~~v~~d~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 775 MEKIVGNDS-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred HHHhhcccc-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1122 32 22 22333 6678999999999999999999854
No 35
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=82.99 E-value=9.6 Score=41.09 Aligned_cols=115 Identities=13% Similarity=-0.032 Sum_probs=75.9
Q ss_pred CchHHHHHHHHhc-CChHHHHHHhhcc---------ccC-ccchhh----h-------c--CCCCCCCcccchhhHHhHH
Q 039586 153 GMNDILYMLFTIT-QDPKHLVLVHLFD---------KPC-SLGLLA----V-------Q--ADDISGFCAKTKIPIVIGS 208 (592)
Q Consensus 153 Gm~eaL~~LY~iT-Gd~ryL~LA~~F~---------~~~-~~~~l~----~-------~--~D~l~~~HAn~~ip~~~G~ 208 (592)
|+.-+|..+|+.+ +++++++.++... +.. .+.+.. . . .....+.|...- +...+
T Consensus 176 Gi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~G--i~~~l 253 (382)
T cd04793 176 GPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPG--IARAL 253 (382)
T ss_pred HHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHH--HHHHH
Confidence 5667999999999 9999999866532 111 111111 0 0 011235565322 23344
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHh---------ccCeEeecHHH---HHHHHHhcCCCCchHHHHHHHHhhcC
Q 039586 209 QMRYEVTGDQLQTEILKFFMDIVN---------ASHTHASGGTS---VSRNLFRWTKEMAYADYYERALTNAS 269 (592)
Q Consensus 209 a~~y~~TGD~~yl~A~~~~w~~V~---------~~~~y~TGG~g---ls~~Lf~~tgD~~YaD~~EraLYN~v 269 (592)
...++.++|+.+++.+....+.+. ...+++.|-.| +..+|.+.|+|.+|.+..++.+=+.+
T Consensus 254 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l 326 (382)
T cd04793 254 QLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQII 326 (382)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 567889999999998777766543 35578888777 44677788999999998887766555
No 36
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=82.72 E-value=2.4 Score=44.43 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=88.8
Q ss_pred HHHHHHHcCChhHHHHHHHhh--ccc---c----------cc-c-c--cccCCC--CchHHHHHHH-HhcCChHHHHHHh
Q 039586 118 LLDEYAYADKAEALKITTWMY--IVT---R----------HW-D-S--LNEETG--GMNDILYMLF-TITQDPKHLVLVH 175 (592)
Q Consensus 118 Lld~Y~~tG~~kaL~va~r~~--~~~---~----------~~-~-~--l~~e~g--Gm~eaL~~LY-~iTGd~ryL~LA~ 175 (592)
++..|+.+++++.++.+.++. ..+ . .| . . +.--|| |+.-+|.++| +.|++++++++++
T Consensus 115 ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~ 194 (355)
T PF05147_consen 115 LLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIE 194 (355)
T ss_dssp HCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHH
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHH
Confidence 445678889999888888771 100 0 01 1 1 122233 6678999999 6999999999999
Q ss_pred hcccc---Cc-----cchhhhcCC----CCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc------CeE
Q 039586 176 LFDKP---CS-----LGLLAVQAD----DISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS------HTH 237 (592)
Q Consensus 176 ~F~~~---~~-----~~~l~~~~D----~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~------~~y 237 (592)
...+. .. .++-....+ ...+.|.. .-+.......++..+|+.+++.++.+-+.+.++ -.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~--~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 272 (355)
T PF05147_consen 195 QILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGS--PGILLALLKAYKILDDEEYDEEAEQALESILQKGLFLNNPSL 272 (355)
T ss_dssp HHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSH--HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-S
T ss_pred HHHHHHHHhcCcccCCCCCCCCccccccccccccCc--HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccccCCCCce
Confidence 76531 10 011100001 33455653 233445567889999999998888777666553 245
Q ss_pred eecHHH---HHHHHHhcCCCCchHHHHHHHHhhcC
Q 039586 238 ASGGTS---VSRNLFRWTKEMAYADYYERALTNAS 269 (592)
Q Consensus 238 ~TGG~g---ls~~Lf~~tgD~~YaD~~EraLYN~v 269 (592)
+-|=.| +...|.+.+++..|.+.+++.+-..+
T Consensus 273 CHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T PF05147_consen 273 CHGTAGILEILLDLYKYTGDEEYKELANKLIQKLL 307 (355)
T ss_dssp TTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHC
T ss_pred eCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 556666 56778889999999998888865554
No 37
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=82.25 E-value=6.5 Score=43.08 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHhhh------------------------hcCC-------cccccchHHHHHH--HHH
Q 039586 74 FVGHYLGTMALKWATTHNDSLKGKCRL------------------------WCPL-------CPNARIKWEILAG--LLD 120 (592)
Q Consensus 74 ~vgkwLsAaA~~~a~t~D~~L~~k~d~------------------------W~p~-------Y~~~~~gHki~aG--Lld 120 (592)
-.=|-+||.--.+..+++...++++++ |.|. + +=||.+.-+ |++
T Consensus 175 p~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~---ePGH~fEW~~Lll~ 251 (388)
T COG2942 175 PHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGI---EPGHQFEWAWLLLD 251 (388)
T ss_pred cchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCC---CCchHHHHHHHHHH
Confidence 367999999999999999888888877 6442 3 668988766 678
Q ss_pred HHHHcCChhHHHHHHHhhcc--ccccc--------ccccCCCCc------------hHHHHHHHHhcC-ChHHHHHHhhc
Q 039586 121 EYAYADKAEALKITTWMYIV--TRHWD--------SLNEETGGM------------NDILYMLFTITQ-DPKHLVLVHLF 177 (592)
Q Consensus 121 ~Y~~tG~~kaL~va~r~~~~--~~~~~--------~l~~e~gGm------------~eaL~~LY~iTG-d~ryL~LA~~F 177 (592)
..+..|+.++++.|+++|.. ..-|. ++.-....+ ..+++.|+..|| +++|.+-++++
T Consensus 252 ~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~ 331 (388)
T COG2942 252 IARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARA 331 (388)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 88999999999999999421 11010 000000010 359999999999 99999998887
Q ss_pred cc
Q 039586 178 DK 179 (592)
Q Consensus 178 ~~ 179 (592)
.+
T Consensus 332 ~~ 333 (388)
T COG2942 332 WD 333 (388)
T ss_pred HH
Confidence 54
No 38
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=80.60 E-value=5.3 Score=47.73 Aligned_cols=110 Identities=14% Similarity=0.170 Sum_probs=68.4
Q ss_pred HHHHHHHHcCChhHHHHHHHhh--cc--cccccc--cccCCCCchHHHHHHHHhcCChHHHHHHhhccccCccchhh---
Q 039586 117 GLLDEYAYADKAEALKITTWMY--IV--TRHWDS--LNEETGGMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLA--- 187 (592)
Q Consensus 117 GLld~Y~~tG~~kaL~va~r~~--~~--~~~~~~--l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~--- 187 (592)
||.--|.++++..+..=+.+.. .. ..+.+. +.++-.|..-+|+++|+.|.+||.|++|.-..+..+-+...
T Consensus 704 al~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~ 783 (963)
T COG4403 704 ALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS 783 (963)
T ss_pred hhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc
Confidence 4445567788887777666651 10 111111 22344556679999999999999999998765433211110
Q ss_pred hcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHH
Q 039586 188 VQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFM 228 (592)
Q Consensus 188 ~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w 228 (592)
...--+.-.|.+..| +..++.+|++|||+.++++.+.+.
T Consensus 784 s~~~l~gfshg~sgi--~~tL~~ly~~T~e~~l~~~i~e~~ 822 (963)
T COG4403 784 SETVLLGFSHGASGI--ILTLLKLYEATGEESLLKKIKELL 822 (963)
T ss_pred ccceecccccchHHH--HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 011112345776554 556688999999999999887654
No 39
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=78.90 E-value=32 Score=37.92 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHh-------hccc------cc----cc---ccc--cCCCCch-H---HHHHHH
Q 039586 109 RIKWEILAGLLDEYAYADKAEALKITTWM-------YIVT------RH----WD---SLN--EETGGMN-D---ILYMLF 162 (592)
Q Consensus 109 ~~gHki~aGLld~Y~~tG~~kaL~va~r~-------~~~~------~~----~~---~l~--~e~gGm~-e---aL~~LY 162 (592)
+| | |++++++.|+++|.++.++.|.+. |... ++ |+ .+. .-.+||- | -|+++-
T Consensus 176 ~M-H-l~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a 253 (388)
T COG2942 176 HM-H-LLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIA 253 (388)
T ss_pred ch-H-HHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHH
Confidence 67 7 668999999999999888877765 2111 11 21 011 1123443 4 788999
Q ss_pred HhcCChHHHHHHhhccccC---ccchhhhc------CCCCC----CCcccchhhHHhHHHHHHHHhC-CHHHHHHHHHHH
Q 039586 163 TITQDPKHLVLVHLFDKPC---SLGLLAVQ------ADDIS----GFCAKTKIPIVIGSQMRYEVTG-DQLQTEILKFFM 228 (592)
Q Consensus 163 ~iTGd~ryL~LA~~F~~~~---~~~~l~~~------~D~l~----~~HAn~~ip~~~G~a~~y~~TG-D~~yl~A~~~~w 228 (592)
+.-|+...+..|++..+.. ..++...+ .|... -.+-.+.-. +..+..+++.|| ++.|.+...++|
T Consensus 254 ~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~-l~AA~ala~~~~~~~~y~~~~~R~~ 332 (388)
T COG2942 254 RRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEA-LKAAVALAETTGARERYWQWYARAW 332 (388)
T ss_pred HHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHH-HHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999999999999876432 11211100 11100 011111111 334456788899 999999999999
Q ss_pred HHHhc
Q 039586 229 DIVNA 233 (592)
Q Consensus 229 ~~V~~ 233 (592)
+-...
T Consensus 333 ~~~~~ 337 (388)
T COG2942 333 DYLWW 337 (388)
T ss_pred HHHHH
Confidence 87655
No 40
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=77.47 E-value=2.8 Score=46.86 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHHHHHhc--CChHHHHHHhhccc---cCccchhh--hcCCCCCC----Ccccc--hhh----HHhHHHHHHHHhCCHH
Q 039586 157 ILYMLFTIT--QDPKHLVLVHLFDK---PCSLGLLA--VQADDISG----FCAKT--KIP----IVIGSQMRYEVTGDQL 219 (592)
Q Consensus 157 aL~~LY~iT--Gd~ryL~LA~~F~~---~~~~~~l~--~~~D~l~~----~HAn~--~ip----~~~G~a~~y~~TGD~~ 219 (592)
+|.-.|.+| +|+.+|+.|+.+-+ +.|..|-. ...-.+.. .+.+. .+- +..=+..+.++|||++
T Consensus 85 gLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~k 164 (452)
T PF01532_consen 85 GLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPK 164 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-TH
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccH
Confidence 788899999 99999999987643 33322110 00000000 11111 111 1223367899999999
Q ss_pred HHHHHHHHHHHHhc--cCeEeecHHH-----------------------HHHHHH---hcCC--CCchHHHHHHHHh
Q 039586 220 QTEILKFFMDIVNA--SHTHASGGTS-----------------------VSRNLF---RWTK--EMAYADYYERALT 266 (592)
Q Consensus 220 yl~A~~~~w~~V~~--~~~y~TGG~g-----------------------ls~~Lf---~~tg--D~~YaD~~EraLY 266 (592)
|.+++++.++.+.+ .+.-..|-.+ +-++|+ .+++ |..|.+.++.++-
T Consensus 165 Y~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~~ 241 (452)
T PF01532_consen 165 YFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAVD 241 (452)
T ss_dssp HHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHHH
Confidence 99999999999988 4443444333 445555 4566 8889888887753
No 41
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=77.26 E-value=13 Score=40.92 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=60.5
Q ss_pred HHHHHHHhcCChHHHHHHhhccccCccchhhhcCCCCCCCcccchhhHHhHHHHHHHHh--------CCHHHHHHHHHHH
Q 039586 157 ILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYEVT--------GDQLQTEILKFFM 228 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~T--------GD~~yl~A~~~~w 228 (592)
+-++||+.|||++|++-|+.+............ ....+ .+... .+...++..+ -.+.+++.++.+.
T Consensus 223 AA~~Ly~aTg~~~Y~~~a~~~~~~~~~~~~~~~-~~~~W--~~~~~---~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 296 (444)
T PF00759_consen 223 AAAELYRATGDESYLDYAKEYYDDLEASQWSNE-WSFSW--DNKAA---GAQLLLAKLTNDDPSRDAAREQYKSAADKFL 296 (444)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHCCTSSBSTTSSS-SSSCT--TBSHH---HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHhHHhhcccccccc-cccch--hhhhh---hhhHHHHhcccchhhhHHHHHHHHHHHHHHH
Confidence 889999999999999999988754311110000 11111 11111 1112223333 1356778888888
Q ss_pred HHHhcc----CeEeecHH--------H-------HHHHHHh---cCCCCchHHHHHHHHhhcCC
Q 039586 229 DIVNAS----HTHASGGT--------S-------VSRNLFR---WTKEMAYADYYERALTNASG 270 (592)
Q Consensus 229 ~~V~~~----~~y~TGG~--------g-------ls~~Lf~---~tgD~~YaD~~EraLYN~vG 270 (592)
+..... -.+..||. . +.-.++. ++++.+|.+..++.|-=.+|
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~WGs~~~~~~~a~l~~~~~~~~~~~~~~y~~~a~~qldyiLG 360 (444)
T PF00759_consen 297 NKWLNDGYGSVPYTPGGLAWIYEWGSNRYAANAAFLALAYAKYDLTGDQEYRDFAQSQLDYILG 360 (444)
T ss_dssp HHHHHSTTTBSEBCTTSSBESESTTHHHHHHHHHHHHHHHHHTCHCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCCcccCccccccccCCCccHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhhhcC
Confidence 777663 23333432 1 2233444 88899999998888765554
No 42
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=71.69 E-value=7.8 Score=43.67 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCChHHHHHHhhccccCccchhhh---cCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 039586 156 DILYMLFTITQDPKHLVLVHLFDKPCSLGLLAV---QADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVN 232 (592)
Q Consensus 156 eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~---~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~ 232 (592)
.++++-|++++|+...++|..+.+.-.++.+-. ..-.+..-+-|..-+++.++.++|+.|++++|++.|+.+=+++.
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~l~ 470 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGENLF 470 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 389999999999999999998876554443321 11112233456667788999999999999999999999988887
Q ss_pred ccC
Q 039586 233 ASH 235 (592)
Q Consensus 233 ~~~ 235 (592)
++|
T Consensus 471 ~~~ 473 (557)
T PF06917_consen 471 EQH 473 (557)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
No 43
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=71.34 E-value=9.3 Score=43.12 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHh---hccccccc------ccccCCC----CchHHHHHHHHhcCChHHHHHHhhc
Q 039586 114 ILAGLLDEYAYADKAEALKITTWM---YIVTRHWD------SLNEETG----GMNDILYMLFTITQDPKHLVLVHLF 177 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~---~~~~~~~~------~l~~e~g----Gm~eaL~~LY~iTGd~ryL~LA~~F 177 (592)
.+-.++-+|+.++|+.+.++++.| ++...... .+..... =+.-++.+||+.|++++||+||...
T Consensus 389 yll~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~ 465 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQV 465 (557)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445677899999999999999999 33221110 0110000 0123999999999999999999876
No 44
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=69.65 E-value=41 Score=37.03 Aligned_cols=126 Identities=11% Similarity=0.015 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhcccccccccc---cCCCC-chHHHHHHHHhc-C-------ChHHHHHHhhccccC
Q 039586 114 ILAGLLDEYAYADKAEALKITTWMYIVTRHWDSLN---EETGG-MNDILYMLFTIT-Q-------DPKHLVLVHLFDKPC 181 (592)
Q Consensus 114 i~aGLld~Y~~tG~~kaL~va~r~~~~~~~~~~l~---~e~gG-m~eaL~~LY~iT-G-------d~ryL~LA~~F~~~~ 181 (592)
++-+.+.-|++||+++-++.+.+.+.......... -.+.- ...+.+.|...+ . .++++..++.+.+..
T Consensus 220 ~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (444)
T PF00759_consen 220 LAWAAAELYRATGDESYLDYAKEYYDDLEASQWSNEWSFSWDNKAAGAQLLLAKLTNDDPSRDAAREQYKSAADKFLNKW 299 (444)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHCCTSSBSTTSSSSSSCTTBSHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHhHHhhcccccccccccchhhhhhhhhHHHHhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 44455788999999999999999853211110000 01111 123555556665 1 345666666554321
Q ss_pred ccc---hhhhcCCCC----CCCcccchhhHHhHHHHHHH---HhCCHHHHHHHHHHHHHHhccC----eEeec
Q 039586 182 SLG---LLAVQADDI----SGFCAKTKIPIVIGSQMRYE---VTGDQLQTEILKFFMDIVNASH----THASG 240 (592)
Q Consensus 182 ~~~---~l~~~~D~l----~~~HAn~~ip~~~G~a~~y~---~TGD~~yl~A~~~~w~~V~~~~----~y~TG 240 (592)
... ........+ .++- ++......-++.+|+ .+++++|++.+....+-|.... +|+||
T Consensus 300 ~~~~~~~~~~~~~g~~~~~~WGs-~~~~~~~a~l~~~~~~~~~~~~~~y~~~a~~qldyiLG~Np~~~SyV~G 371 (444)
T PF00759_consen 300 LNDGYGSVPYTPGGLAWIYEWGS-NRYAANAAFLALAYAKYDLTGDQEYRDFAQSQLDYILGRNPFGQSYVTG 371 (444)
T ss_dssp HHSTTTBSEBCTTSSBESESTTH-HHHHHHHHHHHHHHHHTCHCHHHHHHHHHHHHHHHHHTTSTT--BSBTT
T ss_pred hhccCCCcccCccccccccCCCc-cHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhhhcCcCCCCceeeec
Confidence 110 000000100 1222 555555555677887 9999999999999999987654 66665
No 45
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=67.61 E-value=12 Score=40.26 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=53.7
Q ss_pred CchHHHHHHHHhcCChHHHHHHhhccccCccchhhh-cCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 039586 153 GMNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAV-QADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIV 231 (592)
Q Consensus 153 Gm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~-~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V 231 (592)
|+-.++..+++.++|+++++.|....+......... ......-.|...-+ ...+..+|+.|+|++++++++++.+.+
T Consensus 248 Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~--~~~l~~~~~~~~~~~~~~~a~~~~~~~ 325 (382)
T cd04793 248 GIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGL--LFIFYLLYKDTNTNEFKSALEYLLNQI 325 (382)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 667899999999999999999988755322111111 01122345763322 344567899999999999999988876
Q ss_pred hc
Q 039586 232 NA 233 (592)
Q Consensus 232 ~~ 233 (592)
..
T Consensus 326 l~ 327 (382)
T cd04793 326 IS 327 (382)
T ss_pred HH
Confidence 54
No 46
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=66.97 E-value=9.7 Score=40.86 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=43.1
Q ss_pred HHHHHHHcCChhHHHHHHHhhcccccccc--ccc------CCCCchHHHHHHHHhcCChHHHHHHhhccc
Q 039586 118 LLDEYAYADKAEALKITTWMYIVTRHWDS--LNE------ETGGMNDILYMLFTITQDPKHLVLVHLFDK 179 (592)
Q Consensus 118 Lld~Y~~tG~~kaL~va~r~~~~~~~~~~--l~~------e~gGm~eaL~~LY~iTGd~ryL~LA~~F~~ 179 (592)
|..+|+.-+.++.|+.+...- +-.|+. |.. +..|--.++.-||++|||.+||-=|+.|-.
T Consensus 289 L~kAy~VF~Eekyl~aa~eca--dvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 289 LAKAYQVFKEEKYLEAAMECA--DVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 467889889999998887751 112321 211 222445699999999999999999999965
No 47
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=60.44 E-value=18 Score=38.84 Aligned_cols=79 Identities=18% Similarity=0.086 Sum_probs=52.3
Q ss_pred CCCchHHHHHHHHhcCChHHHHHHhhccccCcc-chhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHH
Q 039586 151 TGGMNDILYMLFTITQDPKHLVLVHLFDKPCSL-GLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMD 229 (592)
Q Consensus 151 ~gGm~eaL~~LY~iTGd~ryL~LA~~F~~~~~~-~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~ 229 (592)
-.|+...|++-|++-++++||+-|..--+--+. +-+..+...-.+.-.|.. .+.-+|++|||.+|+--|+.|.+
T Consensus 282 ApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaY-----vFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 282 APGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAY-----VFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchh-----hhHhHHHHcCcHHHHHHHHHHHH
Confidence 457888999999999999999988754321110 112222222111122322 23468999999999999999999
Q ss_pred HHhcc
Q 039586 230 IVNAS 234 (592)
Q Consensus 230 ~V~~~ 234 (592)
.+.++
T Consensus 357 ~lld~ 361 (403)
T KOG2787|consen 357 WLLDY 361 (403)
T ss_pred HHHhh
Confidence 88774
No 48
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=57.54 E-value=20 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.5
Q ss_pred eEEEEEeccCCCCCCcEEEECCeecCCC
Q 039586 359 LSFGFRISSWTNTNGAKATLNGQDLPLP 386 (592)
Q Consensus 359 ftL~LRIP~Wa~~~~~~v~VNG~~v~~~ 386 (592)
.+|.|.+|+ +++|+|||++....
T Consensus 3 a~itv~vPa-----dAkl~v~G~~t~~~ 25 (75)
T TIGR03000 3 ATITVTLPA-----DAKLKVDGKETNGT 25 (75)
T ss_pred eEEEEEeCC-----CCEEEECCeEcccC
Confidence 578888893 78999999987753
No 49
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=54.08 E-value=72 Score=33.95 Aligned_cols=106 Identities=6% Similarity=-0.057 Sum_probs=65.2
Q ss_pred HHHHHHHhcCChHHHHHHhhccc-------cCccchhhhcCCCCC-CCcc------cchhhHHhHHHHHHHHhCC-----
Q 039586 157 ILYMLFTITQDPKHLVLVHLFDK-------PCSLGLLAVQADDIS-GFCA------KTKIPIVIGSQMRYEVTGD----- 217 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F~~-------~~~~~~l~~~~D~l~-~~HA------n~~ip~~~G~a~~y~~TGD----- 217 (592)
-|+++|+.|+|++|.+-+.+=++ +..=+|.. +.+. +.|. +-.+.++.-+.++++..++
T Consensus 52 fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf---~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~ 128 (290)
T TIGR02474 52 YLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQF---YPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFP 128 (290)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcc---cCCcCCcccccccCcHHHHHHHHHHHHHHhccCCccccc
Confidence 78999999999999998876332 11111110 0110 1111 1133445555566654432
Q ss_pred ----HHHHHHHHHHHHHHhccCeEeec---HHH----------------------------HHHHHHhcC-CCCchHHHH
Q 039586 218 ----QLQTEILKFFMDIVNASHTHASG---GTS----------------------------VSRNLFRWT-KEMAYADYY 261 (592)
Q Consensus 218 ----~~yl~A~~~~w~~V~~~~~y~TG---G~g----------------------------ls~~Lf~~t-gD~~YaD~~ 261 (592)
++.+.|+++..+.|.+.+.-..| +.+ +.+.|+.+. +++++.+-+
T Consensus 129 ~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai 208 (290)
T TIGR02474 129 DSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAI 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHH
Confidence 68999999999999987755433 444 567777776 788888877
Q ss_pred HHHH
Q 039586 262 ERAL 265 (592)
Q Consensus 262 EraL 265 (592)
|-++
T Consensus 209 ~~A~ 212 (290)
T TIGR02474 209 RAGV 212 (290)
T ss_pred HHHH
Confidence 7653
No 50
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=52.75 E-value=36 Score=34.64 Aligned_cols=43 Identities=7% Similarity=-0.130 Sum_probs=33.1
Q ss_pred ccchhhHHhHHHHHHHHhCCHHHHHHHHH-HHHHHhccCeEeec
Q 039586 198 AKTKIPIVIGSQMRYEVTGDQLQTEILKF-FMDIVNASHTHASG 240 (592)
Q Consensus 198 An~~ip~~~G~a~~y~~TGD~~yl~A~~~-~w~~V~~~~~y~TG 240 (592)
.|..+....+++.+..+++|+++.+-+.+ |++.+....+...|
T Consensus 165 nNh~~~~~~~~~~~ai~l~d~~~~~~a~~~~~~~~~~~qi~~dG 208 (272)
T PF05426_consen 165 NNHGTWANAAVMAIAIFLDDDELYDRAVNRFKKGIINKQIDPDG 208 (272)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHCHHCCC-TTS
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhcccccc
Confidence 67778888888999999999887765555 58888788888888
No 51
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=49.93 E-value=22 Score=37.76 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCeEeecHHH
Q 039586 204 IVIGSQMRYEVTGDQLQTEILKFFMDIVNASHTHASGGTS 243 (592)
Q Consensus 204 ~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~y~TGG~g 243 (592)
.+.=++++|..|+|++|++|+.+..+.|.+ -.|..||.-
T Consensus 44 ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 44 EIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp HHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 344568999999999999999999999986 568899987
No 52
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=47.11 E-value=48 Score=30.47 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=22.5
Q ss_pred eEEEEecCccceEEEeccccCCCCeeEEeec
Q 039586 522 TVSLESVTQKGCFVSTSVNLKSGASMKLSCN 552 (592)
Q Consensus 522 ~vs~e~~~~~gc~~~~~~~~~~~~~~~~~~~ 552 (592)
+-+|||+..||||+.++. ...+.|.|.++
T Consensus 80 ~~~FESaa~PgwFIaT~~--~~~~pv~l~~~ 108 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATSP--EDNQPVELTKK 108 (120)
T ss_dssp EEEEEESSSTTEEEEBES--SSTEEEEEESS
T ss_pred ceEEEEccCCCeEEEecc--cCCceEEEEec
Confidence 555999999999999765 34667878764
No 53
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=45.86 E-value=48 Score=35.20 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChHHHHHHhhccc-------cCccc----hhhhc-CCCCCCCcccchhhHHhHHHHHHHHhCCH------
Q 039586 157 ILYMLFTITQDPKHLVLVHLFDK-------PCSLG----LLAVQ-ADDISGFCAKTKIPIVIGSQMRYEVTGDQ------ 218 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F~~-------~~~~~----~l~~~-~D~l~~~HAn~~ip~~~G~a~~y~~TGD~------ 218 (592)
-|+++|+.|+|++|++-+.+=++ +..=+ |+..+ .+.+. .-=+-++.++.=+.++++-.++-
T Consensus 47 fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~IT-fNDdam~~vl~lL~~v~~~~~~~~~v~~~ 125 (289)
T PF09492_consen 47 FLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHIT-FNDDAMVNVLELLRDVAEGKGDFAFVDES 125 (289)
T ss_dssp HHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE--GGGHHHHHHHHHHHHHCT-TTSTTS-HH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceE-EccHHHHHHHHHHHHHHhhcCCccccCHH
Confidence 79999999999999998876332 11111 22111 00000 00012233333345667777776
Q ss_pred ---HHHHHHHHHHHHHhccCeEeecHHH-------------------------------HHHHHHhcC-CCCchHHHHHH
Q 039586 219 ---LQTEILKFFMDIVNASHTHASGGTS-------------------------------VSRNLFRWT-KEMAYADYYER 263 (592)
Q Consensus 219 ---~yl~A~~~~w~~V~~~~~y~TGG~g-------------------------------ls~~Lf~~t-gD~~YaD~~Er 263 (592)
++++|.++..+.|.+.++-+.|=.. +.+.|+.+. +.+++.+-+|-
T Consensus 126 ~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~ 205 (289)
T PF09492_consen 126 LRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEA 205 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 8999999999999999987765332 667777776 56777777766
Q ss_pred H
Q 039586 264 A 264 (592)
Q Consensus 264 a 264 (592)
+
T Consensus 206 A 206 (289)
T PF09492_consen 206 A 206 (289)
T ss_dssp H
T ss_pred H
Confidence 5
No 54
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=43.75 E-value=29 Score=38.61 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHh-------hcc-c----------------cccc--ccccCCCCchHHHHHHHHhc
Q 039586 112 WEILAGLLDEYAYADKAEALKITTWM-------YIV-T----------------RHWD--SLNEETGGMNDILYMLFTIT 165 (592)
Q Consensus 112 Hki~aGLld~Y~~tG~~kaL~va~r~-------~~~-~----------------~~~~--~l~~e~gGm~eaL~~LY~iT 165 (592)
=.++-||+.+|..+|++-.|+.|+.+ |.- . ..|. +-..|.--+..-+-.|-++|
T Consensus 178 IRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~lt 257 (546)
T KOG2431|consen 178 IRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLT 257 (546)
T ss_pred HHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhc
Confidence 34778999999999999888877765 210 0 0111 11123333334677899999
Q ss_pred CChHHHHHHhhccc
Q 039586 166 QDPKHLVLVHLFDK 179 (592)
Q Consensus 166 Gd~ryL~LA~~F~~ 179 (592)
||++|-++|.+..+
T Consensus 258 gd~kY~~~a~kv~e 271 (546)
T KOG2431|consen 258 GDPKYEELAEKVTE 271 (546)
T ss_pred CCchHHHHHHHHHH
Confidence 99999999998753
No 55
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=41.59 E-value=40 Score=35.19 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=68.3
Q ss_pred HHHHHHH-HHcCChhHHHHHHHhhc--------ccccccc-cc-----------cCCCCchHHHHHHHHhcCChHHHHHH
Q 039586 116 AGLLDEY-AYADKAEALKITTWMYI--------VTRHWDS-LN-----------EETGGMNDILYMLFTITQDPKHLVLV 174 (592)
Q Consensus 116 aGLld~Y-~~tG~~kaL~va~r~~~--------~~~~~~~-l~-----------~e~gGm~eaL~~LY~iTGd~ryL~LA 174 (592)
..|...| +.+++++.++++.+... .+..|.. .. .+..|+.-++.++++.++|+.+.+.+
T Consensus 174 ~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~ 253 (355)
T PF05147_consen 174 YALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEA 253 (355)
T ss_dssp HHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHH
Confidence 4444566 58888998888887711 1111210 00 12236778999999999999999999
Q ss_pred hhccccCccchhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Q 039586 175 HLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVNAS 234 (592)
Q Consensus 175 ~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~ 234 (592)
..+......... ......-.|...-+ +.-+..+|+.++++.|++.++.+++.+++.
T Consensus 254 ~~~~~~~~~~~~--~~~~~~lCHG~aG~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T PF05147_consen 254 EQALESILQKGL--FLNNPSLCHGTAGI--LEILLDLYKYTGDEEYKELANKLIQKLLSY 309 (355)
T ss_dssp HHHHHHHHHH-T--CTTSS-STTSHHHH--HHHHHHHHHHH--HCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccc--cCCCCceeCchHHh--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 877654221110 11222346764332 333567899999999999999999988654
No 56
>PLN02175 endoglucanase
Probab=40.59 E-value=58 Score=37.07 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=39.0
Q ss_pred HHHHHHHhcCChHHHHHHhhccccCccchhhhcCCCCCCCcccchhhHHhHHHH-HHH------HhCCHHHHHHHHHHHH
Q 039586 157 ILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQM-RYE------VTGDQLQTEILKFFMD 229 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~-~y~------~TGD~~yl~A~~~~w~ 229 (592)
+-+|||+.|||++||+.++.+.... ......+ .+ +..|+.. +++ .++.+.|++.+++++.
T Consensus 239 AAawLY~ATgd~~Yl~~~~~~~~~~-------~~~~~~W--d~----k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~ 305 (484)
T PLN02175 239 GASWLLRATNDPYYANFIKSLGGGD-------QPDIFSW--DN----KYAGAYVLLSRRALLNKDSNFEQYKQAAENFIC 305 (484)
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCC-------CCCccCC--cC----HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Confidence 8889999999999999877642211 0011111 11 2223322 222 2445689999999999
Q ss_pred HHhcc
Q 039586 230 IVNAS 234 (592)
Q Consensus 230 ~V~~~ 234 (592)
.....
T Consensus 306 ~~~~~ 310 (484)
T PLN02175 306 KILPD 310 (484)
T ss_pred hccCC
Confidence 87653
No 57
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=35.01 E-value=83 Score=36.29 Aligned_cols=73 Identities=7% Similarity=-0.068 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChHHHHHHhhcccc--C-ccch----------------hhhcCC-CCCCCcccchhhHHhHHHHHHHHhC
Q 039586 157 ILYMLFTITQDPKHLVLVHLFDKP--C-SLGL----------------LAVQAD-DISGFCAKTKIPIVIGSQMRYEVTG 216 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F~~~--~-~~~~----------------l~~~~D-~l~~~HAn~~ip~~~G~a~~y~~TG 216 (592)
+|.+||+.+|+-.||+.|..+.+. . |++. +.+.+| ..+.+-.+.+.++ .++|-+++
T Consensus 585 gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNL----vrL~~~~~ 660 (786)
T KOG2244|consen 585 GLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNL----VRLASIVA 660 (786)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhH----HHHHHHhh
Confidence 899999999999999999987542 2 2221 111111 1122334444443 47888999
Q ss_pred CHHHHHHHHHHHHHHhc
Q 039586 217 DQLQTEILKFFMDIVNA 233 (592)
Q Consensus 217 D~~yl~A~~~~w~~V~~ 233 (592)
.+.|++.|..+..-...
T Consensus 661 ~e~yl~ka~~ll~~fse 677 (786)
T KOG2244|consen 661 AESYLNKAHRLLAVFSE 677 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888765443
No 58
>PLN02909 Endoglucanase
Probab=34.90 E-value=4.3e+02 Score=30.21 Aligned_cols=123 Identities=13% Similarity=0.019 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhhccc----ccccccccCCCCchHHHHHHHHhc-----CChHHHHHHhhccccCc
Q 039586 112 WEILAGLLDEYAYADKAEALKITTWMYIVT----RHWDSLNEETGGMNDILYMLFTIT-----QDPKHLVLVHLFDKPCS 182 (592)
Q Consensus 112 Hki~aGLld~Y~~tG~~kaL~va~r~~~~~----~~~~~l~~e~gGm~eaL~~LY~iT-----Gd~ryL~LA~~F~~~~~ 182 (592)
-+++=|...-|++||+++-|+.+...-... --|+ .-+.|. .+.|.+++ +.++|.+.|..|.....
T Consensus 240 DEl~WAAawLy~aTgd~~Yl~~~~~~~~~~~~~~~sWD---~k~~g~---~~lLa~~~~~~~~~~~~y~~~ad~~~~~~~ 313 (486)
T PLN02909 240 DELLWAATWLYKATKKQMYLKYIKHEAISASVAEFSWD---LKYAGA---QVLLSKLNFEGEKGLQSYKQQADSFVCSVL 313 (486)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHhcccccCCCccCCc---ccccHH---HHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 445555568899999999999777531100 0122 112232 33334333 33678888887764211
Q ss_pred cc----hhhhcCC---CCCC----CcccchhhHHhHHHHHHH-----------HhCCHHHHHHHHHHHHHHhcc----Ce
Q 039586 183 LG----LLAVQAD---DISG----FCAKTKIPIVIGSQMRYE-----------VTGDQLQTEILKFFMDIVNAS----HT 236 (592)
Q Consensus 183 ~~----~l~~~~D---~l~~----~HAn~~ip~~~G~a~~y~-----------~TGD~~yl~A~~~~w~~V~~~----~~ 236 (592)
-. ....... .+.+ .|++...-++.-.++... .++.++|++.++..++-|..+ ++
T Consensus 314 ~~~~~~~~~~TpgGl~~~~~wgn~rya~~aafLa~~ya~~l~~~~~~~~c~~~~~~~~~y~~fA~~QidYiLG~NP~~~S 393 (486)
T PLN02909 314 PGSPFHQVFITPGGMIHLRDGANSQYVTSTAFLFSVYSDILRRHNQKVMCGNQQFDSTRLMAFAKQQIDYLLGANPQGRS 393 (486)
T ss_pred cCCCCcccccCCCceeEecCCChHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 10 0000000 1111 233333222222222211 146789999999999998665 48
Q ss_pred Eeec
Q 039586 237 HASG 240 (592)
Q Consensus 237 y~TG 240 (592)
|++|
T Consensus 394 YVVG 397 (486)
T PLN02909 394 YMVG 397 (486)
T ss_pred eEec
Confidence 8887
No 59
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=34.20 E-value=75 Score=28.63 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=28.3
Q ss_pred CcEEEECCeecCCCCCCCCCCCEEEEEecceeEEEECC
Q 039586 373 GAKATLNGQDLPLPSTARTSDDKLTIQLPLILRIEPID 410 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~~~Wk~GD~I~L~Lpm~lr~~~~~ 410 (592)
+-.|.|||+.+.. ...=+.||+|+|.|.-....+...
T Consensus 33 ~GrV~vNG~~aKp-S~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 33 GGRVKVNGQRAKP-SKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred CCeEEECCEEccc-ccccCCCCEEEEEeCCcEEEEEEE
Confidence 5589999998852 225689999999998877766553
No 60
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=33.94 E-value=46 Score=32.53 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=21.4
Q ss_pred eEEEEecCccceEEEeccccCCC-CeeEEe
Q 039586 522 TVSLESVTQKGCFVSTSVNLKSG-ASMKLS 550 (592)
Q Consensus 522 ~vs~e~~~~~gc~~~~~~~~~~~-~~~~~~ 550 (592)
+.+|||+.-||||+.++.. .. +.|+|.
T Consensus 116 tstFESaafPgWfIsTs~~--e~~~PV~Lt 143 (165)
T PHA02651 116 TSTFESVAFPGWFLCTSSG--DGIEPVGLT 143 (165)
T ss_pred ceEEEecCCCCcEEEeccc--cCCcceEee
Confidence 9999999999999997641 12 578876
No 61
>PLN02345 endoglucanase
Probab=33.86 E-value=77 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCChHHHHHHh
Q 039586 156 DILYMLFTITQDPKHLVLVH 175 (592)
Q Consensus 156 eaL~~LY~iTGd~ryL~LA~ 175 (592)
-+-+|||+.|||++||+.+.
T Consensus 209 WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 209 WAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 38899999999999999884
No 62
>PLN02613 endoglucanase
Probab=32.11 E-value=84 Score=35.90 Aligned_cols=110 Identities=10% Similarity=-0.037 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCC------hhHHHHHHHhhccc-ccccc------cccCCCCch----HHHHHHHHhcCChHHHHHHhhcc
Q 039586 116 AGLLDEYAYADK------AEALKITTWMYIVT-RHWDS------LNEETGGMN----DILYMLFTITQDPKHLVLVHLFD 178 (592)
Q Consensus 116 aGLld~Y~~tG~------~kaL~va~r~~~~~-~~~~~------l~~e~gGm~----eaL~~LY~iTGd~ryL~LA~~F~ 178 (592)
++|-.+++.-.+ +++|+.|+++|... ..... .....+|.. -+-+|||+.|||++||+.++...
T Consensus 179 AALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y~~~~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~~ 258 (498)
T PLN02613 179 AALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGSYQASCPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISNK 258 (498)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 444444554433 46788888874321 11111 111123333 38889999999999999876542
Q ss_pred ccCccchhhhcCCCCCCCcccchhhHHhHHHHHHH--HhCCHHHHHHHHHHHHHHhc
Q 039586 179 KPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYE--VTGDQLQTEILKFFMDIVNA 233 (592)
Q Consensus 179 ~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~--~TGD~~yl~A~~~~w~~V~~ 233 (592)
... ... ... ...+...-..+-++..+. .++.+.|+..++.+......
T Consensus 259 ~~~--~~~----~~~--~Wd~~~~G~~vLla~~~~~~~~~~~~yk~~~e~~~~~~~~ 307 (498)
T PLN02613 259 GWS--QAV----NEF--SWDNKFAGAQALLASEFYGGANDLAKFKTDVESFVCALMP 307 (498)
T ss_pred ccc--cCC----Ccc--CccchHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcc
Confidence 110 000 001 111111111111122211 14557899999988877654
No 63
>PLN00119 endoglucanase
Probab=31.00 E-value=91 Score=35.56 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=18.8
Q ss_pred HHHHHHHhcCChHHHHHHhhc
Q 039586 157 ILYMLFTITQDPKHLVLVHLF 177 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F 177 (592)
+-+|||+.|||+.||+.++..
T Consensus 245 AAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 245 AAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 888999999999999987754
No 64
>PHA02811 putative host range protein; Provisional
Probab=31.00 E-value=51 Score=32.78 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCCCce-EEEEEEEeCCCCcceEEEEEeccCCC--C-CCcEEEECCeecCCC
Q 039586 338 VSSDPYL-HITFTFLPKGAARPLSFGFRISSWTN--T-NGAKATLNGQDLPLP 386 (592)
Q Consensus 338 ~~~~~~~-~V~i~V~~~~~~~~ftL~LRIP~Wa~--~-~~~~v~VNG~~v~~~ 386 (592)
..|+++| .+.|.++.. +...|-+-|| |.|.. . ....+++||..+..+
T Consensus 24 ~kGdSYGC~I~Lk~~~~-Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 24 LKGDSYGCTINIKVNQQ-KKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred ccCCccCeEEEEEeCCc-cEEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 3455553 566666653 6677888889 99954 1 267899999988753
No 65
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=30.71 E-value=61 Score=25.94 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=19.1
Q ss_pred CcEEEECCeecCCCC-C--CCCCCCEEEEEec
Q 039586 373 GAKATLNGQDLPLPS-T--ARTSDDKLTIQLP 401 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~-~--~Wk~GD~I~L~Lp 401 (592)
...|.+||+-+.... + .-++||+|+|-=+
T Consensus 31 ~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 31 RVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred eEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 567888987665321 1 4578999887533
No 66
>PLN02266 endoglucanase
Probab=30.69 E-value=1.2e+02 Score=34.77 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHhcCChHHHHHHhhc
Q 039586 157 ILYMLFTITQDPKHLVLVHLF 177 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~F 177 (592)
+-+|||+.|||++||+.++..
T Consensus 260 AAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 260 GAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 778999999999999987654
No 67
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=30.61 E-value=80 Score=33.61 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHHHHhccCeEeecHHH
Q 039586 204 IVIGSQMRYEVTGDQLQTEILKFFMDIVNASHTHASGGTS 243 (592)
Q Consensus 204 ~~~G~a~~y~~TGD~~yl~A~~~~w~~V~~~~~y~TGG~g 243 (592)
.+.=++++|..|+|+.|++|+.+..+.|.. =.|..||..
T Consensus 49 e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 49 EIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 344557899999999999999999999988 568899988
No 68
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=29.76 E-value=70 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.7
Q ss_pred eEEEEecCccceEEEeccccCCCCeeEEe
Q 039586 522 TVSLESVTQKGCFVSTSVNLKSGASMKLS 550 (592)
Q Consensus 522 ~vs~e~~~~~gc~~~~~~~~~~~~~~~~~ 550 (592)
+.+|||+.-||||+.++. ...+.|.|.
T Consensus 104 ~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 130 (144)
T cd00100 104 KNYFESAAFPNWFIATKQ--EEDKPVFLA 130 (144)
T ss_pred ceEEEEccCCCcEEEecc--cCCeEEEee
Confidence 899999999999999764 234667775
No 69
>PLN02171 endoglucanase
Probab=28.92 E-value=98 Score=36.42 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCC------hhHHHHHHHh---------------------------hcccccccccccCCCCchHHHH
Q 039586 113 EILAGLLDEYAYADK------AEALKITTWM---------------------------YIVTRHWDSLNEETGGMNDILY 159 (592)
Q Consensus 113 ki~aGLld~Y~~tG~------~kaL~va~r~---------------------------~~~~~~~~~l~~e~gGm~eaL~ 159 (592)
+.-|+|-++++.-.+ +++|+.|+++ |.+|..| +-+
T Consensus 180 e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DEl~W------------AAa 247 (629)
T PLN02171 180 ETAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDELLW------------AAA 247 (629)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHHHHH------------HHH
Q ss_pred HHHHhcCChHHHHHHh
Q 039586 160 MLFTITQDPKHLVLVH 175 (592)
Q Consensus 160 ~LY~iTGd~ryL~LA~ 175 (592)
|||+.|||++||+.++
T Consensus 248 wLy~ATgd~~Yl~~~~ 263 (629)
T PLN02171 248 WLYQATNNQYYLDYLG 263 (629)
T ss_pred HHHHHhCCHHHHHHHH
No 70
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=28.78 E-value=35 Score=34.34 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=40.2
Q ss_pred CCCCCCceEEEEEEEeCCCCcce-----EEEEEeccCCCC-------CCcEEEECCeecCCCCC--CCCCCCEEEEEecc
Q 039586 337 VVSSDPYLHITFTFLPKGAARPL-----SFGFRISSWTNT-------NGAKATLNGQDLPLPST--ARTSDDKLTIQLPL 402 (592)
Q Consensus 337 P~~~~~~~~V~i~V~~~~~~~~f-----tL~LRIP~Wa~~-------~~~~v~VNG~~v~~~~~--~Wk~GD~I~L~Lpm 402 (592)
||.| +..++|..+ ...+ .=-+|||+|-.+ .-+.++|||.+-....| +-.+.|.|++-=|+
T Consensus 121 PyPG----TLNv~v~~~--~~~~r~l~~~~gi~Iegf~~~~RtfG~v~~yp~~Ingi~gaiV~P~rT~h~~dviEIIapv 194 (214)
T COG1339 121 PYPG----TLNVKVDPE--SLIERRLRESRGIRIEGFKTEDRTFGGVKAYPCKINGIEGAIVIPERTHHPTDVIEIIAPV 194 (214)
T ss_pred CCCC----ceEEeeChh--hhHHHhhccCCCEeeCCCCCCCceeccEEEEEEEEcCcceEEEeeccccCCcceEEEEccH
Confidence 5556 677777432 1111 224899999853 12678899943332234 66678888888888
Q ss_pred eeEEE
Q 039586 403 ILRIE 407 (592)
Q Consensus 403 ~lr~~ 407 (592)
.+|-.
T Consensus 195 ~LR~~ 199 (214)
T COG1339 195 KLRDE 199 (214)
T ss_pred hHHHH
Confidence 87754
No 71
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=28.21 E-value=76 Score=30.51 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=31.2
Q ss_pred CCCCCce-EEEEEEEeCCCCcceEEEEEeccCCC---CCCcEEEECCeecCC
Q 039586 338 VSSDPYL-HITFTFLPKGAARPLSFGFRISSWTN---TNGAKATLNGQDLPL 385 (592)
Q Consensus 338 ~~~~~~~-~V~i~V~~~~~~~~ftL~LRIP~Wa~---~~~~~v~VNG~~v~~ 385 (592)
..||++| .+.|.++.. +...|-+-|| |.|.. -....+++||..++.
T Consensus 24 ~kGdsYGC~I~lk~~~~-K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~ 73 (149)
T PF03287_consen 24 HKGDSYGCTIKLKSKET-KKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDL 73 (149)
T ss_pred ccCcccCEEEEEEeCCc-cEEEEEEEEc-cChhhcccccceEEEECCeEeeE
Confidence 3455554 456666543 5667888889 99965 125789999988764
No 72
>PLN02308 endoglucanase
Probab=28.18 E-value=1.1e+02 Score=35.05 Aligned_cols=20 Identities=5% Similarity=-0.164 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHhh
Q 039586 157 ILYMLFTITQDPKHLVLVHL 176 (592)
Q Consensus 157 aL~~LY~iTGd~ryL~LA~~ 176 (592)
+-+|||+.|||++||+.+..
T Consensus 242 AAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 242 GAAWLHKASRRREYREYIVK 261 (492)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 88899999999999997765
No 73
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=27.68 E-value=3.5e+02 Score=22.34 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=25.2
Q ss_pred CcceEEEEEeccCCCCCCcEEEECCeecCCCCCCCCCCCEEEEEec
Q 039586 356 ARPLSFGFRISSWTNTNGAKATLNGQDLPLPSTARTSDDKLTIQLP 401 (592)
Q Consensus 356 ~~~ftL~LRIP~Wa~~~~~~v~VNG~~v~~~~~~Wk~GD~I~L~Lp 401 (592)
..++.|.+--|+ ..+|++||+++....+.=+...++.|++|
T Consensus 37 ~~~~~i~iGna~-----~v~v~~nG~~~~~~~~~~~v~~~~~~~~~ 77 (77)
T PF13464_consen 37 KEPFRIRIGNAG-----AVEVTVNGKPVDLLGPPGQVVKVARFTLD 77 (77)
T ss_pred CCCEEEEEeCCC-----cEEEEECCEECCCCCCCCccceEEEEcCC
Confidence 445666665555 68999999999863221112456666654
No 74
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=27.59 E-value=1.1e+02 Score=30.42 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=27.8
Q ss_pred CCceeeeCCCcceEEeeCCCCCCCceEEEeeccCCCCCeEEEEecCccceEEEecc
Q 039586 484 PGMLVVRGTDDELVVTDSSSVHGSSIFRLVTRWDGKAETVSLESVTQKGCFVSTSV 539 (592)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~gl~g~~~~vs~e~~~~~gc~~~~~~ 539 (592)
=|.+|.-..+ .+++.++.+.|+--.|.+|+. ||+++..++ -.+|||....
T Consensus 47 ~GkYLs~Dk~-G~v~a~sdAiGp~E~f~~V~~-~~~~a~~~~----~~~~FLs~~~ 96 (191)
T PF06229_consen 47 HGKYLSCDKD-GIVSARSDAIGPQEQFEPVFQ-DGKPALFSS----SNNKFLSVDE 96 (191)
T ss_dssp TS-BEEE-SS-SBEEE--SS--TTTBEEEE-S-TT--EEEE-----TTS-BEEE-S
T ss_pred CccEEEEcCC-CcEEEEeecCCCceEEEEEEC-CCCeEEEec----CCCeEEEEec
Confidence 3777722222 266677888899999999995 788888887 7899997543
No 75
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=26.68 E-value=79 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=18.0
Q ss_pred CcEEEECCeecCCCC--CCCCCCCEEEEEe
Q 039586 373 GAKATLNGQDLPLPS--TARTSDDKLTIQL 400 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~--~~Wk~GD~I~L~L 400 (592)
...|.+||+-+.... ..-++||+|++-=
T Consensus 31 ~vav~~N~~iv~r~~~~~~L~~gD~ieIv~ 60 (65)
T PRK05863 31 GIAVAVDWSVLPRSDWATKLRDGARLEVVT 60 (65)
T ss_pred cEEEEECCcCcChhHhhhhcCCCCEEEEEe
Confidence 677888888554321 1347888888743
No 76
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=26.22 E-value=39 Score=38.73 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.7
Q ss_pred CchHHHHHHHHhcCChHHHHHHhhccc
Q 039586 153 GMNDILYMLFTITQDPKHLVLVHLFDK 179 (592)
Q Consensus 153 Gm~eaL~~LY~iTGd~ryL~LA~~F~~ 179 (592)
.+.|+.+.||+.|+|+.||++-..+.+
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456899999999999999999888764
No 77
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=26.16 E-value=90 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=18.6
Q ss_pred CcEEEECCeecCCCCCCCCCCCEEEE
Q 039586 373 GAKATLNGQDLPLPSTARTSDDKLTI 398 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~~~Wk~GD~I~L 398 (592)
+=.|+|||+.+....-.-+.||+|++
T Consensus 33 ~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 33 ENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred cCCEEECCEEccCCCCCCCCCCEEEe
Confidence 45799999987532224578999986
No 78
>PRK07440 hypothetical protein; Provisional
Probab=26.04 E-value=81 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=18.7
Q ss_pred CcEEEECCeecCCCC-C--CCCCCCEEEEE
Q 039586 373 GAKATLNGQDLPLPS-T--ARTSDDKLTIQ 399 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~-~--~Wk~GD~I~L~ 399 (592)
+..|.+||+-+.-.. + .-++||+|++-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 678888998776321 1 34789998874
No 79
>PLN03009 cellulase
Probab=25.85 E-value=5.4e+02 Score=29.49 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHhccCCchHHHHhhh-------------------------hcCCcccccc----hHHHHHHHHHHHHHcCChhHH
Q 039586 81 TMALKWATTHNDSLKGKCRL-------------------------WCPLCPNARI----KWEILAGLLDEYAYADKAEAL 131 (592)
Q Consensus 81 AaA~~~a~t~D~~L~~k~d~-------------------------W~p~Y~~~~~----gHki~aGLld~Y~~tG~~kaL 131 (592)
|+|......-|++..+++-+ ..++| +- .-+++=|...-|++||+++-|
T Consensus 183 A~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y---~~~s~~~DE~~WAAawLy~aTgd~~Yl 259 (495)
T PLN03009 183 AASSMAFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFY---CDFDGYQDELLWGAAWLRRASGDDSYL 259 (495)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCc---CCcccccHHHHHHHHHHHHHhCCHHHH
Q ss_pred HHHHHh---hccccccccc--ccCCCCchHHHHHHHH---hcCChHHHHHHhhccccCccchhhhcCCCCCCC-------
Q 039586 132 KITTWM---YIVTRHWDSL--NEETGGMNDILYMLFT---ITQDPKHLVLVHLFDKPCSLGLLAVQADDISGF------- 196 (592)
Q Consensus 132 ~va~r~---~~~~~~~~~l--~~e~gGm~eaL~~LY~---iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~~------- 196 (592)
+-+... +........+ ..-.+|+...|.++-. .+..++|.+.|..|........-..+....+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~~~~v~~t~~g~~~~~~~ 339 (495)
T PLN03009 260 NYIENNGETLGANDNINEFGWDNKHAGLNVLVSKEVLEGNMYSLQSYKASADSFMCTLIPESSSSHVEYTPGGLIYKPGG 339 (495)
T ss_pred HHHHHhhhhhcCCCCCCCCCCccHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcccCCCCccccCCCCeEEeCCC
Q ss_pred ----cccchhhHHhHHHHHHH-----------HhCCHHHHHHHHHHHHHHhc----cCeEeec
Q 039586 197 ----CAKTKIPIVIGSQMRYE-----------VTGDQLQTEILKFFMDIVNA----SHTHASG 240 (592)
Q Consensus 197 ----HAn~~ip~~~G~a~~y~-----------~TGD~~yl~A~~~~w~~V~~----~~~y~TG 240 (592)
|+++..-++...++.-. ..++++|++.++.-++-|.. .+.|+||
T Consensus 340 sn~~~a~~aafl~l~yA~~l~~~~~~~~~~~~~~~~~~y~~~A~~Q~dYiLG~Np~~~SYVvG 402 (495)
T PLN03009 340 SNLQHATTISFLLLVYANYLSRSSQSVNCGNLTIGPDSLRQQAKRQVDYILGDNPMGLSYMVG 402 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhcccccccccCcCCHHHHHHHHHHHHHHhcCCCCCCCceEec
No 80
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=25.83 E-value=1.6e+02 Score=34.06 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=72.9
Q ss_pred chHHHHHHHHhcCChHHHHHHhhccccCccchhhhcCCCCCCCcccchhhHHhHHHHHHHHhCCHHHHHHHHHHHHHHh-
Q 039586 154 MNDILYMLFTITQDPKHLVLVHLFDKPCSLGLLAVQADDISGFCAKTKIPIVIGSQMRYEVTGDQLQTEILKFFMDIVN- 232 (592)
Q Consensus 154 m~eaL~~LY~iTGd~ryL~LA~~F~~~~~~~~l~~~~D~l~~~HAn~~ip~~~G~a~~y~~TGD~~yl~A~~~~w~~V~- 232 (592)
|.++|-.||-.--+++|.+.-++.-+.-.++... -.++.+-. .|-.+-|+.-+|.+|||+-+++-+..+=+.+.
T Consensus 222 IvDslDTlyim~l~~e~qEar~wi~~~~~~~~v~---~~~SvFE~--NirF~GGllsay~lsge~~f~~kA~~igdkLLp 296 (625)
T KOG2204|consen 222 IVDSLDTLYIMGLKEEFQEARDWIAYNLDFKTVP---IELSVFET--NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLP 296 (625)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhccccccc---chhheeee--eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhh
Confidence 4589999999988888876544432221111110 00111221 24456788889999999999988877755542
Q ss_pred --------------------ccCeEeecHHH-H---------HHHHHhcCCCCchHHHHH--HHHhhcC
Q 039586 233 --------------------ASHTHASGGTS-V---------SRNLFRWTKEMAYADYYE--RALTNAS 269 (592)
Q Consensus 233 --------------------~~~~y~TGG~g-l---------s~~Lf~~tgD~~YaD~~E--raLYN~v 269 (592)
+...+++||.| + .-.|-.+||++.|+...+ |-.+|.+
T Consensus 297 AfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P~~~ekv~~IRk~l~k~ 365 (625)
T KOG2204|consen 297 AFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNPTFAEKVVKIRKVLNKS 365 (625)
T ss_pred cccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCchHHHHHHHHHHHHHhh
Confidence 24577888888 3 346778999999987776 4567766
No 81
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=25.36 E-value=74 Score=30.53 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=21.2
Q ss_pred eEEEEecCccceEEEeccccCCCCeeEEe
Q 039586 522 TVSLESVTQKGCFVSTSVNLKSGASMKLS 550 (592)
Q Consensus 522 ~vs~e~~~~~gc~~~~~~~~~~~~~~~~~ 550 (592)
+.+|||+.-||||+.++. ...+.|.|-
T Consensus 107 ~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 107 KVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred ceEEEEccCCCcEEEecc--ccCceEEee
Confidence 889999999999999764 234557764
No 82
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=24.49 E-value=2.1e+02 Score=31.32 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCccCCCcccccchhhHHHHHHHHHHhccCCchHHHHhhh--------------------hcCCcccccchHHHHHHHHH
Q 039586 61 GGWEDPICEFRGHFVGHYLGTMALKWATTHNDSLKGKCRL--------------------WCPLCPNARIKWEILAGLLD 120 (592)
Q Consensus 61 gGWe~~d~~lrGh~vgkwLsAaA~~~a~t~D~~L~~k~d~--------------------W~p~Y~~~~~gHki~aGLld 120 (592)
|.|..-|+. -|-.+--|-|=.-.+|...+|+.+.++.+. -.|.- +. --.|.+|++
T Consensus 237 gdw~rkdsg-igagidsyyey~lkayillgddsfldrfn~hydai~ryi~k~pi~ldvhihkp~l---~a-r~~mdalla 311 (587)
T KOG2430|consen 237 GDWTRKDSG-IGAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYINKGPIFLDVHIHKPML---AA-RGFMDALLA 311 (587)
T ss_pred CcceecccC-cCcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhcCCCeEEEEecccchh---hH-hhHHHHHHH
Q ss_pred -----HHHHcCChhHHHHHHHh---------------hcccccccc--cccCCCCchHHHHHHHHhcCChHHHHHHhhcc
Q 039586 121 -----EYAYADKAEALKITTWM---------------YIVTRHWDS--LNEETGGMNDILYMLFTITQDPKHLVLVHLFD 178 (592)
Q Consensus 121 -----~Y~~tG~~kaL~va~r~---------------~~~~~~~~~--l~~e~gGm~eaL~~LY~iTGd~ryL~LA~~F~ 178 (592)
+-.-..-+.|.++-+-+ +...-||.. ++.|+ .|+-+-||+.||||-||+.|+.++
T Consensus 312 f~pglqvlkgdik~aie~heml~qvikkh~flpeaft~df~vhwaehpirpef---aestyflykat~dp~yl~v~k~ii 388 (587)
T KOG2430|consen 312 FFPGLQVLKGDIKEAIEMHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPEF---AESTYFLYKATGDPHYLEVAKQII 388 (587)
T ss_pred hCcchhhhccccHHHHHHHHHHHHHHHHcccChHhhcccceeecccCCCChhh---hhhheeeecccCCchHHHHHHHHH
Q ss_pred c
Q 039586 179 K 179 (592)
Q Consensus 179 ~ 179 (592)
+
T Consensus 389 d 389 (587)
T KOG2430|consen 389 D 389 (587)
T ss_pred H
No 83
>PLN02266 endoglucanase
Probab=23.50 E-value=1.3e+02 Score=34.58 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhccCe-Eeec-------------HHH----H-HHHHHhcCCCCchHHHHHHHHhhcCC
Q 039586 218 QLQTEILKFFMDIVNASHT-HASG-------------GTS----V-SRNLFRWTKEMAYADYYERALTNASG 270 (592)
Q Consensus 218 ~~yl~A~~~~w~~V~~~~~-y~TG-------------G~g----l-s~~Lf~~tgD~~YaD~~EraLYN~vG 270 (592)
++++++|+.+|+...+++. |..+ |.. | +-.|++.|||.+|.|+++.. ++.+|
T Consensus 215 ~~~L~~Ak~ly~fa~~~~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~-~~~~g 285 (510)
T PLN02266 215 KLLVRRAIRVFQFADKYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN-GQILG 285 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH-Hhhcc
Confidence 3679999999999887763 4332 111 2 46899999999999999763 34333
No 84
>PLN02345 endoglucanase
Probab=21.74 E-value=1.5e+02 Score=33.67 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhccC-eEeec---HHH------------H-HHHHHhcCCCCchHHHHH
Q 039586 218 QLQTEILKFFMDIVNASH-THASG---GTS------------V-SRNLFRWTKEMAYADYYE 262 (592)
Q Consensus 218 ~~yl~A~~~~w~~V~~~~-~y~TG---G~g------------l-s~~Lf~~tgD~~YaD~~E 262 (592)
.+++++|+.+|+...+++ .|... +.+ | +-.|++.|||.+|.++++
T Consensus 167 ~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DEl~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 167 DTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDELLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 367999999999988875 33211 111 3 469999999999999985
No 85
>PLN02340 endoglucanase
Probab=21.05 E-value=1.4e+03 Score=26.98 Aligned_cols=160 Identities=12% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHhccCCchHHHHhhh----------------------hcCCcccccchHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 039586 81 TMALKWATTHNDSLKGKCRL----------------------WCPLCPNARIKWEILAGLLDEYAYADKAEALKITTWMY 138 (592)
Q Consensus 81 AaA~~~a~t~D~~L~~k~d~----------------------W~p~Y~~~~~gHki~aGLld~Y~~tG~~kaL~va~r~~ 138 (592)
|+|......-|++..+++-. -..+|......-+++=|...-|++||+++-|+.+.+..
T Consensus 186 Aaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~Y~ss~~~DEl~WAAawLy~ATgd~~Yl~~~~~~~ 265 (614)
T PLN02340 186 AAASKAFKPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTSSGYSDELLWAAAWLYRATGDEYYLKYVVDNA 265 (614)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccccCCCCCCcchHHHHHHHHHHHHhCCHHHHHHHHHHH
Q ss_pred cccccccccccCCC---CchHHHHHHHHhcCC----------hHHHHHHhhccccCccchhhhcCCCCCCC---------
Q 039586 139 IVTRHWDSLNEETG---GMNDILYMLFTITQD----------PKHLVLVHLFDKPCSLGLLAVQADDISGF--------- 196 (592)
Q Consensus 139 ~~~~~~~~l~~e~g---Gm~eaL~~LY~iTGd----------~ryL~LA~~F~~~~~~~~l~~~~D~l~~~--------- 196 (592)
....--..-..+++ -..-+.+.|++++.+ ++|..-|.+|...+....-..+....+++
T Consensus 266 ~~~~~~~~~~~~f~WD~k~~g~~~lla~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~g~~v~~TpgGl~~~~~Wgn 345 (614)
T PLN02340 266 VYMGGTGWAVKEFSWDNKYAGVQILLSKILLEGRGGAYTSTLKQYQAKADYFACACLQKNGGYNIQLTPGGLMYVREWNN 345 (614)
T ss_pred HhcccccccCCcCCccchhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhccCCCCccccCCCceEEeCCCCh
Q ss_pred --cccchhhHHhHHHHHHHHhC-----------CHHHHHHHHHHHHHHhccC----eEeec
Q 039586 197 --CAKTKIPIVIGSQMRYEVTG-----------DQLQTEILKFFMDIVNASH----THASG 240 (592)
Q Consensus 197 --HAn~~ip~~~G~a~~y~~TG-----------D~~yl~A~~~~w~~V~~~~----~y~TG 240 (592)
|++...-++.-.++...-++ .++|++.++.-.|-|..+. +|++|
T Consensus 346 ~rya~~aafl~~vyad~l~~~~~~~~c~~~~~~~~~y~~fA~sQidYiLG~NP~~~SYVVG 406 (614)
T PLN02340 346 LQYASSAAFLLAVYSDYLSAANAKLRCPDGLVQPQELLDFARSQADYILGKNPKGMSYMVG 406 (614)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCccccCHHHHHHHHHHhhHhhcCCCCCCCceEec
No 86
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=20.63 E-value=1.2e+02 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=19.6
Q ss_pred CcEEEECCeecCCCC-C--CCCCCCEEEEEec
Q 039586 373 GAKATLNGQDLPLPS-T--ARTSDDKLTIQLP 401 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~-~--~Wk~GD~I~L~Lp 401 (592)
+..|.||++-+.-.. + .-++||+|+|-=|
T Consensus 31 ~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 31 GAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred cEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 678889998776321 1 3478999887544
No 87
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=20.62 E-value=5.3e+02 Score=21.88 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=23.8
Q ss_pred CcEEEECCeecCCCC-C---CCCCCCEEEEEecc
Q 039586 373 GAKATLNGQDLPLPS-T---ARTSDDKLTIQLPL 402 (592)
Q Consensus 373 ~~~v~VNG~~v~~~~-~---~Wk~GD~I~L~Lpm 402 (592)
..++.-||+.+.... + ..++||+|.+.+..
T Consensus 51 ~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 51 SVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred ceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 688999999988643 2 78899999887653
No 88
>smart00363 S4 S4 RNA-binding domain.
Probab=20.59 E-value=1.1e+02 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=18.5
Q ss_pred cEEEECCeecCCCCCCCCCCCEEEEEe
Q 039586 374 AKATLNGQDLPLPSTARTSDDKLTIQL 400 (592)
Q Consensus 374 ~~v~VNG~~v~~~~~~Wk~GD~I~L~L 400 (592)
-.|.|||+.+......-+.||+|++.+
T Consensus 26 g~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCEEecCCCeEeCCCCEEEEcc
Confidence 368899998743222336889988766
No 89
>PRK11507 ribosome-associated protein; Provisional
Probab=20.32 E-value=1.2e+02 Score=25.56 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=19.3
Q ss_pred cEEEECCeecCCCCCCCCCCCEEEEE
Q 039586 374 AKATLNGQDLPLPSTARTSDDKLTIQ 399 (592)
Q Consensus 374 ~~v~VNG~~v~~~~~~Wk~GD~I~L~ 399 (592)
-.|+|||+...-.-.+-.+||+|++.
T Consensus 37 g~V~VNGeve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 37 GQVKVDGAVETRKRCKIVAGQTVSFA 62 (70)
T ss_pred CceEECCEEecccCCCCCCCCEEEEC
Confidence 47999999665433467899999873
No 90
>PLN02909 Endoglucanase
Probab=20.31 E-value=1.5e+02 Score=33.72 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=40.2
Q ss_pred HhHHHHHHHHhC--CH----HHHHHHHHHHHHHhccCeEeec---------HHH----H-HHHHHhcCCCCchHHHHHH
Q 039586 205 VIGSQMRYEVTG--DQ----LQTEILKFFMDIVNASHTHASG---------GTS----V-SRNLFRWTKEMAYADYYER 263 (592)
Q Consensus 205 ~~G~a~~y~~TG--D~----~yl~A~~~~w~~V~~~~~y~TG---------G~g----l-s~~Lf~~tgD~~YaD~~Er 263 (592)
.+.+|..+++-. |+ +++++++.+|+...+++..-.+ |.. | +-.|++.|||.+|.|++..
T Consensus 186 AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 186 AAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGTYDGECPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 344444444433 43 5799999999998887743222 111 3 4689999999999998875
No 91
>PLN00119 endoglucanase
Probab=20.06 E-value=1.6e+02 Score=33.72 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=40.5
Q ss_pred HhHHHHHHHHhC--CH----HHHHHHHHHHHHHhccCe-Eee---cHHH------------H-HHHHHhcCCCCchHHHH
Q 039586 205 VIGSQMRYEVTG--DQ----LQTEILKFFMDIVNASHT-HAS---GGTS------------V-SRNLFRWTKEMAYADYY 261 (592)
Q Consensus 205 ~~G~a~~y~~TG--D~----~yl~A~~~~w~~V~~~~~-y~T---GG~g------------l-s~~Lf~~tgD~~YaD~~ 261 (592)
...+|..+++-. |+ +++++|+.+|+...+++. |.. ++.+ | +-.|++.|||.+|.|++
T Consensus 183 AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~ 262 (489)
T PLN00119 183 AAAMAAASIAFAPSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASSGYEDELLWAAAWLHRATNDQTYLDYL 262 (489)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHH
Confidence 344455555443 44 579999999999877663 321 1111 3 46999999999999998
Q ss_pred HHH
Q 039586 262 ERA 264 (592)
Q Consensus 262 Era 264 (592)
+..
T Consensus 263 ~~~ 265 (489)
T PLN00119 263 TQA 265 (489)
T ss_pred Hhc
Confidence 754
Done!