Query 039589
Match_columns 296
No_of_seqs 124 out of 297
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 60.9 12 0.00042 24.6 4.0 27 84-110 2-28 (33)
2 2er8_A Regulatory protein Leu3 59.5 16 0.00054 25.7 4.9 17 5-21 3-19 (72)
3 3kin_B Kinesin heavy chain; mo 47.4 67 0.0023 25.7 7.3 54 58-111 54-116 (117)
4 2ke4_A CDC42-interacting prote 33.5 64 0.0022 25.5 5.0 54 54-110 10-81 (98)
5 3r4h_A Coiled coil helix CC-TE 33.5 66 0.0023 21.2 4.2 28 84-111 2-29 (34)
6 2zvf_A Alanyl-tRNA synthetase; 32.6 1.1E+02 0.0038 24.6 6.5 48 64-111 12-59 (171)
7 2wt7_B Transcription factor MA 32.5 56 0.0019 25.7 4.5 53 59-111 28-82 (90)
8 3ra3_B P2F; coiled coil domain 32.4 48 0.0017 21.1 3.3 25 86-110 2-26 (28)
9 1r8i_A TRAC; VIRB5, helical bu 32.0 79 0.0027 27.2 5.8 37 85-121 16-52 (213)
10 1lrv_A LRV, leucine-rich repea 31.7 8 0.00027 34.3 -0.6 59 3-67 9-74 (244)
11 1zme_C Proline utilization tra 31.6 44 0.0015 23.1 3.4 25 84-108 44-68 (70)
12 3nmd_A CGMP dependent protein 30.2 71 0.0024 24.4 4.5 29 84-112 40-68 (72)
13 2yy0_A C-MYC-binding protein; 28.5 56 0.0019 23.2 3.5 25 86-110 28-52 (53)
14 3twe_A Alpha4H; unknown functi 27.1 77 0.0026 20.0 3.5 23 86-108 3-25 (27)
15 3iqt_A Signal transduction his 25.5 85 0.0029 24.9 4.5 39 67-112 85-123 (123)
16 1gk4_A Vimentin; intermediate 22.2 1.1E+02 0.0039 22.9 4.4 38 63-100 12-49 (84)
17 1zxa_A CGMP-dependent protein 22.0 1.2E+02 0.0039 22.8 4.3 28 85-112 26-53 (67)
18 2l5g_B Putative uncharacterize 21.2 1.2E+02 0.0041 21.1 3.9 24 89-112 7-30 (42)
19 2pbi_A Regulator of G-protein 20.4 1.8E+02 0.0061 28.1 6.4 68 34-101 144-236 (424)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.92 E-value=12 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039589 84 GLISILQHRLKQVQSDLYSAKKELATY 110 (296)
Q Consensus 84 GiIs~LQqQL~~lq~EL~~ak~eLa~Y 110 (296)
|.|..|+++|..++.|++.+|-|++..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999888764
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=59.51 E-value=16 Score=25.73 Aligned_cols=17 Identities=24% Similarity=0.731 Sum_probs=13.3
Q ss_pred CCCChhhhHhhhCCCCC
Q 039589 5 NSPCAACKFLRRKCTQE 21 (296)
Q Consensus 5 ~s~CAACK~lRRkC~~d 21 (296)
..+|..||..+-||...
T Consensus 3 ~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 3 KFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCHHHHHTTCCCCSG
T ss_pred CchhHHHHhcccCCCCC
Confidence 46788898888888754
No 3
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=47.43 E-value=67 Score=25.68 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhhhcc--CCC----ccchH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039589 58 NLREDAVNSLAYEAEARLR--DPV----YGCVG---LISILQHRLKQVQSDLYSAKKELATYI 111 (296)
Q Consensus 58 ~qR~dAv~SLvYEA~aR~R--DPV----yGCvG---iIs~LQqQL~~lq~EL~~ak~eLa~Y~ 111 (296)
..-++++++|-|-+.++.. .|+ ....- .+.....+++.++..+...+.||..|+
T Consensus 54 ~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 54 FNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999988754 111 11122 233344556667777777778887775
No 4
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.52 E-value=64 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhChhhHHHHHHHHHHHHhhhcc------------------CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039589 54 ELATNLREDAVNSLAYEAEARLR------------------DPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110 (296)
Q Consensus 54 ~Lpp~qR~dAv~SLvYEA~aR~R------------------DPVyGCvGiIs~LQqQL~~lq~EL~~ak~eLa~Y 110 (296)
+|||++|...+.+-|-|=+-.+. ||-+|=...+ ..+|..+...|..++.+|..|
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~---~~~L~e~~~kid~L~~el~K~ 81 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL---EPQIAETLSNIERLKLEVQKY 81 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH---HHHHHHHHHHHHHHHHHHHHH
No 5
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=33.48 E-value=66 Score=21.21 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039589 84 GLISILQHRLKQVQSDLYSAKKELATYI 111 (296)
Q Consensus 84 GiIs~LQqQL~~lq~EL~~ak~eLa~Y~ 111 (296)
|.+..++++|..++.||+..|-||+.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888887654
No 6
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.61 E-value=1.1e+02 Score=24.62 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039589 64 VNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYI 111 (296)
Q Consensus 64 v~SLvYEA~aR~RDPVyGCvGiIs~LQqQL~~lq~EL~~ak~eLa~Y~ 111 (296)
...++.+....+.-+..-....|..|..+++.++.+|+.++.+++.+.
T Consensus 12 ~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 12 MERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666655567788899999999999999999999988764
No 7
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.48 E-value=56 Score=25.75 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhhhcc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039589 59 LREDAVNSLAYEAEARLR--DPVYGCVGLISILQHRLKQVQSDLYSAKKELATYI 111 (296)
Q Consensus 59 qR~dAv~SLvYEA~aR~R--DPVyGCvGiIs~LQqQL~~lq~EL~~ak~eLa~Y~ 111 (296)
+|.-..+-=.|.+++|.+ +=+..--.-+..|+.+++.+..|++.++.++..|.
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777899999987 55566667777777788888888888777777664
No 8
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.45 E-value=48 Score=21.07 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039589 86 ISILQHRLKQVQSDLYSAKKELATY 110 (296)
Q Consensus 86 Is~LQqQL~~lq~EL~~ak~eLa~Y 110 (296)
|..|+++...++.|++.++-+++..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888899999999988888753
No 9
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=32.03 E-value=79 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccc
Q 039589 85 LISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQ 121 (296)
Q Consensus 85 iIs~LQqQL~~lq~EL~~ak~eLa~Y~gp~a~~~~~~ 121 (296)
.|..+..+|+.++.+|..+|+++.+.-|..-+..+..
T Consensus 16 q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~~l~ 52 (213)
T 1r8i_A 16 QLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLG 52 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHhc
Confidence 3456788899999999999999999888766655544
No 10
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=31.72 E-value=8 Score=34.29 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCCCCChhhhHhh-----hCCCCC--CccCCCCCCCChhhHhHHHhhhccchHHHHHHhhChhhHHHHHHHH
Q 039589 3 SSNSPCAACKFLR-----RKCTQE--CVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSL 67 (296)
Q Consensus 3 ss~s~CAACK~lR-----RkC~~d--CifAPYFPadq~~~F~~VHKVFG~SNV~KmL~~Lpp~qR~dAv~SL 67 (296)
+..-.|+.|.|.- .+|.++ |+..+|=+ +-.+|.+.+ ..-+.+++++-.++.|..+++.|
T Consensus 9 ~~~~~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~--ri~~~~~~~----p~l~~~ll~d~~~~VR~~AA~~l 74 (244)
T 1lrv_A 9 TPIGDCRVCSFRMSLLLTGRCTPGDACVAVESGR--QIDRFFRNN----PHLAVQYLADPFWERRAIAVRYS 74 (244)
T ss_dssp CCCCCTTTSTTTTTTGGGTSSBTTTBCSSSSCHH--HHHHHHHHC----GGGGGGGTTCSSHHHHHHHHTTS
T ss_pred CCcccccCCCCcccchhcCCCCCCchHhhcCcHH--HHHHHHcCC----HHHHHHHhcCCCHHHHHHHHHhC
Confidence 3446799999988 789975 99998743 445554333 22233444555577787777755
No 11
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.62 E-value=44 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039589 84 GLISILQHRLKQVQSDLYSAKKELA 108 (296)
Q Consensus 84 GiIs~LQqQL~~lq~EL~~ak~eLa 108 (296)
+.|..|+.+|..|+..|..++..|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999988887664
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.23 E-value=71 Score=24.38 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039589 84 GLISILQHRLKQVQSDLYSAKKELATYIG 112 (296)
Q Consensus 84 GiIs~LQqQL~~lq~EL~~ak~eLa~Y~g 112 (296)
..|..|+.+|.....++...+.+|-.|+.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56889999999999999999999998865
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.51 E-value=56 Score=23.15 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039589 86 ISILQHRLKQVQSDLYSAKKELATY 110 (296)
Q Consensus 86 Is~LQqQL~~lq~EL~~ak~eLa~Y 110 (296)
+..|+.+++.|+.++..++++|..|
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666666666543
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.07 E-value=77 Score=20.00 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039589 86 ISILQHRLKQVQSDLYSAKKELA 108 (296)
Q Consensus 86 Is~LQqQL~~lq~EL~~ak~eLa 108 (296)
...|..+++.+++.|.++++.|.
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999999998874
No 15
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=25.52 E-value=85 Score=24.88 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039589 67 LAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIG 112 (296)
Q Consensus 67 LvYEA~aR~RDPVyGCvGiIs~LQqQL~~lq~EL~~ak~eLa~Y~g 112 (296)
...|..+|..+++. .+...+..|..++..+..++..|+|
T Consensus 85 ~~LE~~~r~g~~~~-------~l~~~l~~L~del~~v~~~~~~~~~ 123 (123)
T 3iqt_A 85 QLIEQQLRSGTKEE-------DLEPELLELLDEMDNVAREASKILG 123 (123)
T ss_dssp HHHHHHHHTTCCGG-------GGHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566677777754 4555666677777777777777765
No 16
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.23 E-value=1.1e+02 Score=22.89 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHH
Q 039589 63 AVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDL 100 (296)
Q Consensus 63 Av~SLvYEA~aR~RDPVyGCvGiIs~LQqQL~~lq~EL 100 (296)
....-+-|++.|...-+-..-..|..|+.+|..++.++
T Consensus 12 sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 12 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666654444444445555555555554444
No 17
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.01 E-value=1.2e+02 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039589 85 LISILQHRLKQVQSDLYSAKKELATYIG 112 (296)
Q Consensus 85 iIs~LQqQL~~lq~EL~~ak~eLa~Y~g 112 (296)
.|..|+..|..-..++..++.+|.+|+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888999999999988865
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.22 E-value=1.2e+02 Score=21.13 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 039589 89 LQHRLKQVQSDLYSAKKELATYIG 112 (296)
Q Consensus 89 LQqQL~~lq~EL~~ak~eLa~Y~g 112 (296)
|-++|..+-.|+++++++|..|..
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888888877654
No 19
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=20.38 E-value=1.8e+02 Score=28.08 Aligned_cols=68 Identities=9% Similarity=0.141 Sum_probs=47.5
Q ss_pred hhHhHHHhhhccchHHHHHH---hhChhhHHHHHHHHHHHHh----hhccCCCccchHH------------------HHH
Q 039589 34 QKFANVHKVFGASNVAKLLN---ELATNLREDAVNSLAYEAE----ARLRDPVYGCVGL------------------ISI 88 (296)
Q Consensus 34 ~~F~~VHKVFG~SNV~KmL~---~Lpp~qR~dAv~SLvYEA~----aR~RDPVyGCvGi------------------Is~ 88 (296)
+.+..++|.|...+-.=+++ .+.++++.+-..-+|++.+ +++.-|+.||+-+ +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 55677778777666655555 3445666667777887766 6677899998744 456
Q ss_pred HHHHHHHHHHHHH
Q 039589 89 LQHRLKQVQSDLY 101 (296)
Q Consensus 89 LQqQL~~lq~EL~ 101 (296)
++.+|+.++.+|.
T Consensus 224 ~r~~veqLk~~l~ 236 (424)
T 2pbi_A 224 VRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777887777763
Done!