Query 039589
Match_columns 296
No_of_seqs 124 out of 297
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 19:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039589.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039589hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 50.1 16 0.0012 25.7 5.7 52 61-112 14-65 (114)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 34.1 67 0.0049 22.1 8.0 66 44-109 1-77 (88)
3 d1pyia1 g.38.1.1 (A:30-71) PPR 27.1 15 0.0011 23.0 1.9 18 4-21 1-18 (42)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 24.4 46 0.0033 21.8 4.2 26 83-108 32-57 (61)
5 d1r8ia_ a.8.7.1 (A:) Typo IV s 21.0 79 0.0058 24.2 5.7 36 85-120 9-44 (187)
6 d3coqa1 g.38.1.1 (A:8-48) Gal4 19.2 23 0.0017 21.8 1.6 15 6-20 2-16 (41)
7 d1zmec1 g.38.1.1 (C:31-66) PUT 17.6 28 0.002 21.2 1.7 15 6-20 2-16 (36)
8 d1am9a_ a.38.1.1 (A:) SREBP-1a 15.2 1E+02 0.0075 20.8 4.5 29 82-110 48-76 (80)
9 d1clda_ g.38.1.1 (A:) CD2-Lac9 14.7 30 0.0022 20.5 1.2 16 6-21 1-16 (33)
10 d2dmya1 d.50.1.1 (A:8-91) Sper 13.5 72 0.0052 22.1 3.3 25 178-216 59-83 (84)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.07 E-value=16 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039589 61 EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIG 112 (296)
Q Consensus 61 ~dAv~SLvYEA~aR~RDPVyGCvGiIs~LQqQL~~lq~EL~~ak~eLa~Y~g 112 (296)
.+-+.+=+-|+..-+.+|++|-.+.|-.+..+.+.++.+|..-+..|.....
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~ 65 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEG 65 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888999999999999999999999999999999887654
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.09 E-value=67 Score=22.08 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=38.9
Q ss_pred ccchHHHHHHhhChhhHHHHHHHHHHHHhhhccCCC-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039589 44 GASNVAKLLNELATNLREDAVNSLAYEAEARLRDPV-----------YGCVGLISILQHRLKQVQSDLYSAKKELAT 109 (296)
Q Consensus 44 G~SNV~KmL~~Lpp~qR~dAv~SLvYEA~aR~RDPV-----------yGCvGiIs~LQqQL~~lq~EL~~ak~eLa~ 109 (296)
|..++-+.....-+-.|.+.++..+.+=...+=+-. -..+-.|..|+.++..+..++...+.+...
T Consensus 1 g~~~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 1 GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666777777776655443331100 113556777777777777777766666543
No 3
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.13 E-value=15 Score=23.00 Aligned_cols=18 Identities=39% Similarity=0.929 Sum_probs=14.7
Q ss_pred CCCCChhhhHhhhCCCCC
Q 039589 4 SNSPCAACKFLRRKCTQE 21 (296)
Q Consensus 4 s~s~CAACK~lRRkC~~d 21 (296)
|..+|..||..+.||...
T Consensus 1 Sr~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 1 SRTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCCHHHHHHTCCCCCC
T ss_pred CcHHHHHHHHhCcCCCCc
Confidence 456899999999999754
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.37 E-value=46 Score=21.84 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039589 83 VGLISILQHRLKQVQSDLYSAKKELA 108 (296)
Q Consensus 83 vGiIs~LQqQL~~lq~EL~~ak~eLa 108 (296)
+-.|..|+.++..+++|+...+.++.
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999998888764
No 5
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=21.05 E-value=79 Score=24.19 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccc
Q 039589 85 LISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120 (296)
Q Consensus 85 iIs~LQqQL~~lq~EL~~ak~eLa~Y~gp~a~~~~~ 120 (296)
-|..+..+|+.++.+|..+|.++++..|...+-.+.
T Consensus 9 ql~q~~~ql~~~k~Ql~q~k~~~~s~tG~r~~g~~~ 44 (187)
T d1r8ia_ 9 QLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLL 44 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHh
Confidence 467788999999999999999999999977665554
No 6
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.24 E-value=23 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.959 Sum_probs=12.5
Q ss_pred CCChhhhHhhhCCCC
Q 039589 6 SPCAACKFLRRKCTQ 20 (296)
Q Consensus 6 s~CAACK~lRRkC~~ 20 (296)
.+|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578999999999974
No 7
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.56 E-value=28 Score=21.20 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.8
Q ss_pred CCChhhhHhhhCCCC
Q 039589 6 SPCAACKFLRRKCTQ 20 (296)
Q Consensus 6 s~CAACK~lRRkC~~ 20 (296)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 478888888888864
No 8
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.16 E-value=1e+02 Score=20.81 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039589 82 CVGLISILQHRLKQVQSDLYSAKKELATY 110 (296)
Q Consensus 82 CvGiIs~LQqQL~~lq~EL~~ak~eLa~Y 110 (296)
.+-.|..|+.++..+..+....+.++...
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888888888777653
No 9
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=14.66 E-value=30 Score=20.46 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.3
Q ss_pred CCChhhhHhhhCCCCC
Q 039589 6 SPCAACKFLRRKCTQE 21 (296)
Q Consensus 6 s~CAACK~lRRkC~~d 21 (296)
.+|..||..+.||+.+
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3799999999999754
No 10
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=72 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCCCC
Q 039589 178 MFEAQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAP 216 (296)
Q Consensus 178 ~~~aqq~a~~~~~~~q~~m~r~~e~~q~~~~f~~g~~~~ 216 (296)
.-+|.|.||.. +|+ -|+|-+|||.+
T Consensus 59 KK~Aeq~AA~~-------aL~-------~L~~~~~~d~d 83 (84)
T d2dmya1 59 KKTAKLHVAVK-------VLQ-------AMGYPTGFDAD 83 (84)
T ss_dssp HHHHHHHHHHH-------HHH-------HHTCCCSCCSC
T ss_pred HHHHHHHHHHH-------HHH-------HhCCCCCCcCC
Confidence 45788888844 443 36788888865
Done!